Query psy13826
Match_columns 173
No_of_seqs 311 out of 2335
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 21:27:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13826.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13826hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 1.2E-25 4.2E-30 164.2 9.0 90 84-173 11-100 (216)
2 2ew1_A RAS-related protein RAB 99.9 1E-21 3.6E-26 141.7 11.0 95 78-172 18-112 (201)
3 2hup_A RAS-related protein RAB 99.9 1.1E-21 3.8E-26 141.3 9.5 94 79-172 22-115 (201)
4 3q3j_B RHO-related GTP-binding 99.9 2.9E-21 1E-25 140.5 10.6 91 82-173 23-113 (214)
5 2oil_A CATX-8, RAS-related pro 99.9 5.2E-21 1.8E-25 136.5 11.2 95 78-172 17-111 (193)
6 2a5j_A RAS-related protein RAB 99.9 5.1E-21 1.7E-25 136.5 11.0 94 79-172 14-107 (191)
7 2y8e_A RAB-protein 6, GH09086P 99.8 6.9E-21 2.3E-25 133.7 11.2 90 83-172 11-100 (179)
8 2hjg_A GTP-binding protein ENG 99.8 2.3E-21 7.7E-26 155.0 9.6 86 85-173 174-272 (436)
9 2bme_A RAB4A, RAS-related prot 99.8 8E-21 2.7E-25 134.5 11.2 91 82-172 6-96 (186)
10 1zbd_A Rabphilin-3A; G protein 99.8 6.8E-21 2.3E-25 136.9 10.9 92 81-172 3-94 (203)
11 1ek0_A Protein (GTP-binding pr 99.8 9.4E-21 3.2E-25 131.8 11.3 88 85-172 2-89 (170)
12 2fg5_A RAB-22B, RAS-related pr 99.8 9.5E-21 3.2E-25 135.3 11.5 92 81-172 18-109 (192)
13 2gf9_A RAS-related protein RAB 99.8 1.3E-20 4.6E-25 134.0 12.0 92 81-172 17-108 (189)
14 3reg_A RHO-like small GTPase; 99.8 9.5E-21 3.2E-25 135.3 11.1 91 81-172 18-108 (194)
15 3tw8_B RAS-related protein RAB 99.8 8E-21 2.7E-25 133.6 10.4 91 82-172 5-95 (181)
16 1z0f_A RAB14, member RAS oncog 99.8 9.4E-21 3.2E-25 133.0 10.7 92 81-172 10-101 (179)
17 2p5s_A RAS and EF-hand domain 99.8 2.9E-21 1E-25 138.7 8.2 94 79-172 21-114 (199)
18 1m7b_A RND3/RHOE small GTP-bin 99.8 8.2E-21 2.8E-25 134.7 10.4 88 84-172 5-92 (184)
19 2bcg_Y Protein YP2, GTP-bindin 99.8 1.1E-20 3.7E-25 136.2 11.2 90 83-172 5-94 (206)
20 2fu5_C RAS-related protein RAB 99.8 1.3E-21 4.5E-26 138.3 6.3 90 83-172 5-94 (183)
21 3tkl_A RAS-related protein RAB 99.8 1.4E-20 4.8E-25 134.3 11.6 92 81-172 11-102 (196)
22 1z06_A RAS-related protein RAB 99.8 7.3E-21 2.5E-25 135.4 10.0 92 81-172 15-107 (189)
23 1r2q_A RAS-related protein RAB 99.8 1.4E-20 4.7E-25 131.0 11.2 89 84-172 4-92 (170)
24 3t5g_A GTP-binding protein RHE 99.8 1.4E-20 4.6E-25 132.8 11.3 88 84-172 4-91 (181)
25 1z08_A RAS-related protein RAB 99.8 5.8E-21 2E-25 133.1 9.2 89 84-172 4-92 (170)
26 1z2a_A RAS-related protein RAB 99.8 1E-20 3.5E-25 131.5 10.5 89 84-172 3-91 (168)
27 3kkq_A RAS-related protein M-R 99.8 1.1E-20 3.6E-25 133.6 10.6 91 81-172 13-103 (183)
28 1wms_A RAB-9, RAB9, RAS-relate 99.8 1.3E-20 4.5E-25 132.3 10.9 90 83-172 4-93 (177)
29 2o52_A RAS-related protein RAB 99.8 5.1E-21 1.7E-25 137.7 9.0 94 79-172 18-111 (200)
30 1z0j_A RAB-22, RAS-related pro 99.8 1.8E-20 6E-25 130.6 11.5 89 84-172 4-92 (170)
31 1gwn_A RHO-related GTP-binding 99.8 8.6E-21 2.9E-25 137.2 10.2 89 83-172 25-113 (205)
32 1x3s_A RAS-related protein RAB 99.8 1.5E-20 5.1E-25 133.9 11.3 91 82-172 11-101 (195)
33 3c5c_A RAS-like protein 12; GD 99.8 1.4E-20 4.9E-25 133.9 10.9 89 83-173 18-106 (187)
34 2efe_B Small GTP-binding prote 99.8 1.8E-20 6.2E-25 132.0 11.1 91 82-172 8-98 (181)
35 2hxs_A RAB-26, RAS-related pro 99.8 3.2E-21 1.1E-25 135.5 6.8 89 84-172 4-93 (178)
36 3cpj_B GTP-binding protein YPT 99.8 1.1E-20 3.6E-25 138.1 9.6 91 82-172 9-99 (223)
37 2il1_A RAB12; G-protein, GDP, 99.8 6.4E-21 2.2E-25 136.2 8.1 93 80-172 20-112 (192)
38 1g16_A RAS-related protein SEC 99.8 9.3E-21 3.2E-25 132.0 8.7 88 85-172 2-89 (170)
39 2g6b_A RAS-related protein RAB 99.8 2.2E-20 7.4E-25 131.5 10.4 92 81-172 5-97 (180)
40 2atx_A Small GTP binding prote 99.8 2E-20 6.8E-25 133.6 10.3 89 83-172 15-103 (194)
41 2q3h_A RAS homolog gene family 99.8 1.8E-20 6.1E-25 134.5 9.8 91 81-172 15-105 (201)
42 2j1l_A RHO-related GTP-binding 99.8 9.4E-21 3.2E-25 137.7 8.4 99 73-172 21-119 (214)
43 2j0v_A RAC-like GTP-binding pr 99.8 2.1E-20 7.2E-25 135.3 10.1 88 84-172 7-94 (212)
44 2fn4_A P23, RAS-related protei 99.8 3.5E-20 1.2E-24 130.3 10.6 89 83-172 6-94 (181)
45 3bc1_A RAS-related protein RAB 99.8 2.8E-20 9.7E-25 132.1 10.2 92 81-172 6-107 (195)
46 3cph_A RAS-related protein SEC 99.8 3.3E-20 1.1E-24 134.1 10.5 92 81-172 15-106 (213)
47 1vg8_A RAS-related protein RAB 99.8 3.2E-20 1.1E-24 133.6 9.9 90 83-172 5-94 (207)
48 2g3y_A GTP-binding protein GEM 99.8 1.7E-20 5.9E-25 136.4 8.4 112 61-173 12-126 (211)
49 3dz8_A RAS-related protein RAB 99.8 2.3E-21 7.8E-26 138.3 3.6 94 79-172 16-109 (191)
50 1mh1_A RAC1; GTP-binding, GTPa 99.8 6E-20 2.1E-24 129.7 10.9 87 85-172 4-90 (186)
51 3clv_A RAB5 protein, putative; 99.8 4.3E-20 1.5E-24 132.0 10.0 89 84-172 5-130 (208)
52 2f7s_A C25KG, RAS-related prot 99.8 1.6E-20 5.4E-25 136.4 7.6 94 79-172 18-121 (217)
53 1c1y_A RAS-related protein RAP 99.8 3.3E-20 1.1E-24 128.8 8.9 86 86-172 3-88 (167)
54 3cbq_A GTP-binding protein REM 99.8 1E-20 3.5E-25 135.7 6.3 93 81-173 18-111 (195)
55 3gj0_A GTP-binding nuclear pro 99.8 1.1E-20 3.9E-25 137.6 6.6 94 79-172 8-101 (221)
56 4dcu_A GTP-binding protein ENG 99.8 4E-20 1.4E-24 148.5 10.1 85 84-171 193-290 (456)
57 3oes_A GTPase rhebl1; small GT 99.8 3.8E-20 1.3E-24 133.0 9.0 89 83-172 21-109 (201)
58 2gco_A H9, RHO-related GTP-bin 99.8 1E-19 3.5E-24 130.9 10.8 88 84-172 23-110 (201)
59 3ihw_A Centg3; RAS, centaurin, 99.8 7E-20 2.4E-24 130.2 9.8 86 81-173 15-100 (184)
60 4bas_A ADP-ribosylation factor 99.8 4.1E-20 1.4E-24 132.1 8.5 92 78-173 9-101 (199)
61 2yc2_C IFT27, small RAB-relate 99.8 5.5E-21 1.9E-25 137.5 3.9 89 84-172 18-110 (208)
62 2iwr_A Centaurin gamma 1; ANK 99.8 4.5E-20 1.5E-24 129.8 8.5 82 85-173 6-87 (178)
63 1ky3_A GTP-binding protein YPT 99.8 2.4E-20 8.1E-25 131.3 6.9 90 83-172 5-95 (182)
64 4gzl_A RAS-related C3 botulinu 99.8 1.1E-19 3.8E-24 131.1 10.1 88 84-172 28-115 (204)
65 1kao_A RAP2A; GTP-binding prot 99.8 1.1E-19 3.7E-24 126.0 9.5 86 86-172 3-88 (167)
66 1u8z_A RAS-related protein RAL 99.8 1.1E-19 3.6E-24 126.1 9.5 86 86-172 4-89 (168)
67 2bov_A RAla, RAS-related prote 99.8 1.2E-19 4.1E-24 130.3 9.7 90 82-172 10-99 (206)
68 2fv8_A H6, RHO-related GTP-bin 99.8 1.6E-19 5.3E-24 130.4 10.2 87 85-172 24-110 (207)
69 3t1o_A Gliding protein MGLA; G 99.8 2E-20 6.7E-25 133.4 5.2 93 78-171 6-110 (198)
70 4dsu_A GTPase KRAS, isoform 2B 99.8 1.9E-19 6.4E-24 127.5 10.3 87 85-172 3-89 (189)
71 3bwd_D RAC-like GTP-binding pr 99.8 1.7E-20 5.9E-25 132.2 4.6 87 85-172 7-93 (182)
72 2a9k_A RAS-related protein RAL 99.8 1.7E-19 5.9E-24 127.3 9.5 89 83-172 15-103 (187)
73 2f9l_A RAB11B, member RAS onco 99.8 3E-19 1E-23 128.2 10.8 89 84-172 3-91 (199)
74 3l0i_B RAS-related protein RAB 99.8 9.4E-21 3.2E-25 136.0 2.8 93 81-173 28-120 (199)
75 3q85_A GTP-binding protein REM 99.8 1.1E-19 3.7E-24 126.6 8.0 88 86-173 2-90 (169)
76 2erx_A GTP-binding protein DI- 99.8 2.2E-19 7.4E-24 125.1 9.5 87 85-172 2-88 (172)
77 1zd9_A ADP-ribosylation factor 99.8 1.6E-19 5.6E-24 128.4 8.7 87 83-173 19-105 (188)
78 2gf0_A GTP-binding protein DI- 99.8 2.3E-19 8E-24 128.2 9.5 88 84-172 6-93 (199)
79 1oix_A RAS-related protein RAB 99.8 5.3E-19 1.8E-23 126.3 11.3 91 82-172 25-115 (191)
80 2atv_A RERG, RAS-like estrogen 99.8 3.1E-19 1.1E-23 127.7 9.6 86 85-172 27-112 (196)
81 2nzj_A GTP-binding protein REM 99.8 2.6E-19 9E-24 125.2 8.8 87 85-172 3-91 (175)
82 3con_A GTPase NRAS; structural 99.8 7.7E-19 2.6E-23 124.8 10.4 88 84-172 19-106 (190)
83 2h17_A ADP-ribosylation factor 99.8 3.6E-19 1.2E-23 125.8 8.5 90 79-173 14-103 (181)
84 3q72_A GTP-binding protein RAD 99.8 3E-19 1E-23 124.0 7.8 86 86-173 2-87 (166)
85 1upt_A ARL1, ADP-ribosylation 99.8 1.1E-18 3.9E-23 121.5 10.6 85 84-173 5-89 (171)
86 2ce2_X GTPase HRAS; signaling 99.8 8.5E-19 2.9E-23 121.2 9.9 86 86-172 3-88 (166)
87 1zj6_A ADP-ribosylation factor 99.8 5.7E-19 1.9E-23 125.3 9.0 84 85-173 15-98 (187)
88 1r8s_A ADP-ribosylation factor 99.8 3.2E-19 1.1E-23 123.6 7.4 82 87-173 1-82 (164)
89 1m2o_B GTP-binding protein SAR 99.8 1.6E-18 5.6E-23 123.6 11.1 84 85-173 22-105 (190)
90 1mky_A Probable GTP-binding pr 99.8 2E-18 6.7E-23 138.1 12.5 85 85-172 179-277 (439)
91 1f6b_A SAR1; gtpases, N-termin 99.8 4.8E-19 1.6E-23 127.2 8.0 84 85-173 24-107 (198)
92 1ksh_A ARF-like protein 2; sma 99.8 7.5E-19 2.6E-23 124.4 8.7 85 84-173 16-100 (186)
93 2zej_A Dardarin, leucine-rich 99.8 1.7E-19 5.8E-24 128.0 5.2 86 86-171 2-92 (184)
94 2h57_A ADP-ribosylation factor 99.8 5.9E-19 2E-23 125.5 7.5 87 82-172 17-104 (190)
95 2cjw_A GTP-binding protein GEM 99.8 8.4E-19 2.9E-23 125.4 8.3 88 85-173 5-95 (192)
96 4djt_A GTP-binding nuclear pro 99.8 2.5E-19 8.7E-24 130.1 5.7 91 82-172 7-98 (218)
97 1fzq_A ADP-ribosylation factor 99.8 7.9E-19 2.7E-23 124.3 7.1 85 84-173 14-98 (181)
98 2b6h_A ADP-ribosylation factor 99.8 1.5E-18 5.2E-23 124.0 8.0 85 84-173 27-111 (192)
99 2wkq_A NPH1-1, RAS-related C3 99.7 6.5E-18 2.2E-22 129.7 10.9 88 84-172 153-240 (332)
100 3th5_A RAS-related C3 botulinu 99.6 8.6E-20 3E-24 131.4 0.0 89 84-173 28-116 (204)
101 2x77_A ADP-ribosylation factor 99.7 1.5E-18 5.1E-23 123.3 6.4 85 84-173 20-104 (189)
102 3r7w_B Gtpase2, GTP-binding pr 99.7 1.3E-18 4.4E-23 133.3 5.8 79 88-171 1-85 (331)
103 3llu_A RAS-related GTP-binding 99.7 1.4E-18 4.8E-23 124.4 5.3 90 79-171 13-108 (196)
104 1moz_A ARL1, ADP-ribosylation 99.7 2.3E-18 7.8E-23 121.4 6.2 85 84-173 16-100 (183)
105 2fh5_B SR-beta, signal recogni 99.7 4.7E-18 1.6E-22 123.0 7.7 85 84-171 5-91 (214)
106 2lkc_A Translation initiation 99.7 8.8E-18 3E-22 117.8 8.3 86 84-171 6-91 (178)
107 3r7w_A Gtpase1, GTP-binding pr 99.7 1.6E-17 5.6E-22 127.0 8.6 86 85-173 2-95 (307)
108 1svi_A GTP-binding protein YSX 99.7 3.6E-17 1.2E-21 116.5 6.9 88 83-173 20-120 (195)
109 2wji_A Ferrous iron transport 99.7 1.9E-16 6.4E-21 110.3 10.2 84 86-171 3-94 (165)
110 3o47_A ADP-ribosylation factor 99.7 1.7E-17 5.9E-22 128.0 5.3 84 85-173 164-247 (329)
111 3c5h_A Glucocorticoid receptor 99.7 5.2E-18 1.8E-22 126.5 1.6 93 79-171 12-175 (255)
112 3lvq_E ARF-GAP with SH3 domain 99.7 1.4E-16 4.7E-21 129.1 9.6 85 84-173 320-404 (497)
113 2gj8_A MNME, tRNA modification 99.7 1.3E-15 4.3E-20 106.9 11.4 86 85-173 3-98 (172)
114 2ged_A SR-beta, signal recogni 99.7 6.8E-17 2.3E-21 114.9 4.5 97 66-171 28-132 (193)
115 2dyk_A GTP-binding protein; GT 99.6 9.2E-16 3.1E-20 105.7 9.7 84 87-172 2-93 (161)
116 1nrj_B SR-beta, signal recogni 99.6 1E-16 3.5E-21 116.3 4.7 82 83-173 9-98 (218)
117 2wjg_A FEOB, ferrous iron tran 99.6 1.8E-15 6.1E-20 107.0 7.9 84 85-170 6-97 (188)
118 3dpu_A RAB family protein; roc 99.6 5.7E-16 1.9E-20 126.6 5.1 90 82-171 37-134 (535)
119 2qu8_A Putative nucleolar GTP- 99.6 3.4E-15 1.2E-19 109.2 8.7 87 84-173 27-123 (228)
120 3lxx_A GTPase IMAP family memb 99.6 3.1E-15 1.1E-19 110.3 7.6 91 80-172 23-126 (239)
121 3a1s_A Iron(II) transport prot 99.6 5.5E-15 1.9E-19 110.4 8.8 86 85-172 4-97 (258)
122 3pqc_A Probable GTP-binding pr 99.6 5.8E-15 2E-19 104.7 8.4 88 81-172 18-118 (195)
123 3b1v_A Ferrous iron uptake tra 99.6 1.4E-15 5E-20 114.3 4.4 84 86-172 3-94 (272)
124 2cxx_A Probable GTP-binding pr 99.6 4.8E-16 1.6E-20 110.0 1.7 80 87-172 2-93 (190)
125 3iby_A Ferrous iron transport 99.6 3.8E-15 1.3E-19 111.1 6.4 84 87-172 2-97 (256)
126 3k53_A Ferrous iron transport 99.5 1.4E-14 4.8E-19 108.8 8.3 84 86-171 3-94 (271)
127 4dhe_A Probable GTP-binding pr 99.5 2.6E-15 8.8E-20 109.1 3.9 89 83-171 26-128 (223)
128 3lxw_A GTPase IMAP family memb 99.5 1.8E-14 6.3E-19 106.8 7.5 85 84-170 19-117 (247)
129 1wf3_A GTP-binding protein; GT 99.5 2.9E-14 1E-18 108.7 8.8 85 85-172 6-100 (301)
130 2xtp_A GTPase IMAP family memb 99.5 9.6E-14 3.3E-18 103.4 11.2 86 83-170 19-117 (260)
131 1mky_A Probable GTP-binding pr 99.5 6.7E-14 2.3E-18 111.8 9.1 83 87-171 2-94 (439)
132 3def_A T7I23.11 protein; chlor 99.5 1.5E-13 5.2E-18 102.7 10.4 84 85-171 35-129 (262)
133 3iev_A GTP-binding protein ERA 99.5 1.1E-13 3.8E-18 105.8 9.2 90 81-172 5-106 (308)
134 3i8s_A Ferrous iron transport 99.5 1.1E-13 3.7E-18 104.2 7.5 84 86-171 3-98 (274)
135 2hjg_A GTP-binding protein ENG 99.5 2E-14 6.9E-19 114.8 3.6 85 87-172 4-96 (436)
136 3gee_A MNME, tRNA modification 99.5 1.1E-13 3.9E-18 111.4 7.4 86 85-173 232-327 (476)
137 1h65_A Chloroplast outer envel 99.4 2.3E-13 8E-18 102.0 7.3 85 85-170 38-131 (270)
138 3p26_A Elongation factor 1 alp 99.4 1.7E-13 5.7E-18 110.8 5.4 87 85-171 32-147 (483)
139 3j2k_7 ERF3, eukaryotic polype 99.4 1.1E-12 3.8E-17 104.7 10.1 87 83-171 14-131 (439)
140 4dcu_A GTP-binding protein ENG 99.4 7.8E-14 2.7E-18 111.9 3.1 86 85-171 22-115 (456)
141 1xzp_A Probable tRNA modificat 99.4 2.6E-13 9E-18 109.4 5.3 85 86-173 243-338 (482)
142 3t5d_A Septin-7; GTP-binding p 99.4 7.6E-13 2.6E-17 99.5 7.3 87 84-170 6-127 (274)
143 1pui_A ENGB, probable GTP-bind 99.4 6.6E-13 2.3E-17 95.4 5.7 86 84-172 24-122 (210)
144 1zun_B Sulfate adenylate trans 99.4 1.9E-12 6.4E-17 103.3 8.6 88 84-171 22-140 (434)
145 2aka_B Dynamin-1; fusion prote 99.3 2.1E-12 7E-17 97.8 8.0 34 79-112 19-52 (299)
146 3geh_A MNME, tRNA modification 99.3 5.2E-13 1.8E-17 107.2 4.8 85 85-172 223-317 (462)
147 3sjy_A Translation initiation 99.3 1.1E-11 3.6E-16 98.1 11.8 87 82-172 4-112 (403)
148 3izy_P Translation initiation 99.3 2.8E-14 9.7E-19 116.1 -3.4 86 85-171 3-88 (537)
149 1jal_A YCHF protein; nucleotid 99.3 1.1E-12 3.8E-17 102.0 5.6 83 87-171 3-109 (363)
150 2qag_A Septin-2, protein NEDD5 99.3 1.1E-12 3.6E-17 102.4 5.4 87 84-170 35-155 (361)
151 1wb1_A Translation elongation 99.3 3.2E-12 1.1E-16 103.2 8.3 86 83-170 16-108 (482)
152 2ohf_A Protein OLA1, GTP-bindi 99.3 1.3E-12 4.3E-17 102.7 5.7 88 85-172 21-130 (396)
153 2c78_A Elongation factor TU-A; 99.3 1.1E-12 3.6E-17 103.9 5.3 88 84-171 9-111 (405)
154 1s0u_A EIF-2-gamma, translatio 99.3 1E-11 3.5E-16 98.3 10.3 88 84-171 6-117 (408)
155 3qq5_A Small GTP-binding prote 99.3 1.1E-12 3.9E-17 104.0 4.7 87 82-169 30-124 (423)
156 2h5e_A Peptide chain release f 99.3 2.2E-12 7.4E-17 105.2 6.1 87 85-171 12-118 (529)
157 1jny_A EF-1-alpha, elongation 99.3 1.3E-12 4.3E-17 104.3 4.2 86 85-170 5-119 (435)
158 1d2e_A Elongation factor TU (E 99.3 2.1E-12 7.3E-17 101.9 5.4 86 86-171 3-102 (397)
159 3izq_1 HBS1P, elongation facto 99.3 8.4E-13 2.9E-17 109.3 3.1 87 84-170 165-280 (611)
160 3cb4_D GTP-binding protein LEP 99.3 4E-12 1.4E-16 104.8 6.9 88 85-172 3-108 (599)
161 1kk1_A EIF2gamma; initiation o 99.3 1.6E-11 5.4E-16 97.3 9.9 89 83-171 7-119 (410)
162 2qtf_A Protein HFLX, GTP-bindi 99.3 1.1E-11 3.7E-16 96.8 8.7 84 86-172 178-271 (364)
163 1n0u_A EF-2, elongation factor 99.3 1E-11 3.5E-16 106.2 9.0 89 84-172 17-135 (842)
164 1jwy_B Dynamin A GTPase domain 99.3 1.5E-11 5E-16 93.8 8.9 29 83-111 21-49 (315)
165 1wxq_A GTP-binding protein; st 99.3 1.3E-11 4.4E-16 97.4 8.5 85 87-171 1-114 (397)
166 3tr5_A RF-3, peptide chain rel 99.3 9.4E-13 3.2E-17 107.3 1.9 87 85-171 12-118 (528)
167 1zo1_I IF2, translation initia 99.3 5.5E-13 1.9E-17 107.7 0.3 84 85-170 3-86 (501)
168 4fid_A G protein alpha subunit 99.2 9.5E-12 3.3E-16 96.0 6.8 37 133-169 159-195 (340)
169 1dar_A EF-G, elongation factor 99.2 7.5E-12 2.6E-16 105.0 6.6 88 81-172 7-114 (691)
170 1ega_A Protein (GTP-binding pr 99.2 5.3E-12 1.8E-16 96.2 5.1 82 86-170 8-100 (301)
171 1g7s_A Translation initiation 99.2 4.6E-12 1.6E-16 104.5 4.2 86 85-170 4-105 (594)
172 1f60_A Elongation factor EEF1A 99.2 4.2E-12 1.4E-16 101.9 3.5 82 85-170 6-120 (458)
173 1r5b_A Eukaryotic peptide chai 99.2 1.9E-11 6.4E-16 98.4 7.0 84 84-171 41-157 (467)
174 2ywe_A GTP-binding protein LEP 99.2 5.2E-11 1.8E-15 98.2 9.7 89 84-172 4-110 (600)
175 3avx_A Elongation factor TS, e 99.2 1.2E-11 4.2E-16 107.5 6.2 90 82-171 292-395 (1289)
176 3ohm_A Guanine nucleotide-bind 99.2 3.8E-11 1.3E-15 92.3 8.2 37 133-169 165-201 (327)
177 2elf_A Protein translation elo 99.2 1.3E-11 4.5E-16 96.5 5.5 70 88-167 23-92 (370)
178 2e87_A Hypothetical protein PH 99.2 4.4E-11 1.5E-15 93.1 8.2 85 84-172 165-260 (357)
179 1lnz_A SPO0B-associated GTP-bi 99.2 6.3E-12 2.1E-16 97.3 3.2 81 87-170 159-248 (342)
180 2dy1_A Elongation factor G; tr 99.2 3.6E-11 1.2E-15 100.5 6.7 88 84-171 7-110 (665)
181 3mca_A HBS1, elongation factor 99.2 4.5E-12 1.6E-16 104.6 0.9 86 83-170 174-290 (592)
182 3t34_A Dynamin-related protein 99.1 8.5E-11 2.9E-15 91.5 7.7 87 85-171 33-185 (360)
183 2rdo_7 EF-G, elongation factor 99.1 1.2E-10 4E-15 98.0 8.8 88 84-171 8-118 (704)
184 2xex_A Elongation factor G; GT 99.1 3.4E-11 1.2E-15 101.0 5.1 87 83-171 7-111 (693)
185 2x2e_A Dynamin-1; nitration, h 99.1 5.3E-11 1.8E-15 92.5 5.4 34 79-112 24-57 (353)
186 2qpt_A EH domain-containing pr 99.1 8.7E-11 3E-15 96.2 6.8 87 82-171 61-201 (550)
187 2dby_A GTP-binding protein; GD 99.1 9.5E-11 3.2E-15 91.5 6.6 82 87-170 2-111 (368)
188 4dkx_A RAS-related protein RAB 99.1 3.4E-11 1.2E-15 87.5 3.8 43 11-53 9-51 (216)
189 2j69_A Bacterial dynamin-like 99.1 1.5E-10 5.2E-15 97.2 7.1 88 85-172 68-214 (695)
190 2qnr_A Septin-2, protein NEDD5 99.0 1.3E-10 4.5E-15 88.5 3.0 71 83-153 15-101 (301)
191 2qag_C Septin-7; cell cycle, c 98.9 1.4E-09 4.6E-14 86.3 6.9 66 83-148 28-101 (418)
192 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.8E-09 9.5E-14 83.8 8.2 86 85-170 19-127 (392)
193 1cip_A Protein (guanine nucleo 98.8 6.9E-09 2.3E-13 80.6 6.2 54 115-172 177-230 (353)
194 1azs_C GS-alpha; complex (lyas 98.8 1.6E-08 5.3E-13 79.7 8.2 49 118-170 204-252 (402)
195 4a9a_A Ribosome-interacting GT 98.8 8.9E-09 3E-13 80.5 6.5 84 85-171 71-162 (376)
196 2xtz_A Guanine nucleotide-bind 98.7 1.4E-08 4.9E-13 78.8 4.6 37 133-169 181-217 (354)
197 1u0l_A Probable GTPase ENGC; p 98.7 1.7E-09 5.8E-14 82.3 -1.3 66 101-172 32-98 (301)
198 2ew1_A RAS-related protein RAB 98.6 6.3E-08 2.1E-12 69.2 6.4 46 7-52 18-63 (201)
199 1udx_A The GTP-binding protein 98.6 5.3E-08 1.8E-12 77.1 6.5 79 88-169 159-246 (416)
200 1zcb_A G alpha I/13; GTP-bindi 98.6 1.1E-07 3.6E-12 74.2 7.5 65 103-171 166-237 (362)
201 3cnl_A YLQF, putative uncharac 98.6 2.6E-08 8.8E-13 74.3 3.8 57 87-147 100-156 (262)
202 2y8e_A RAB-protein 6, GH09086P 98.6 9.7E-08 3.3E-12 66.0 6.2 48 3-50 2-49 (179)
203 2hf9_A Probable hydrogenase ni 98.5 1E-08 3.5E-13 74.2 0.1 40 85-124 37-76 (226)
204 3vqt_A RF-3, peptide chain rel 98.5 4E-08 1.4E-12 80.5 3.0 86 85-170 30-135 (548)
205 2hup_A RAS-related protein RAB 98.5 8.4E-08 2.9E-12 68.3 4.1 41 10-50 24-64 (201)
206 2wsm_A Hydrogenase expression/ 98.5 6.8E-08 2.3E-12 69.6 3.6 26 85-110 29-54 (221)
207 3c5c_A RAS-like protein 12; GD 98.5 1.8E-07 6.2E-12 65.8 5.7 41 12-52 18-58 (187)
208 3ihw_A Centg3; RAS, centaurin, 98.5 2E-07 6.9E-12 65.4 5.7 40 12-51 17-56 (184)
209 1z08_A RAS-related protein RAB 98.5 2E-07 6.9E-12 63.9 5.4 41 12-52 3-43 (170)
210 1wms_A RAB-9, RAB9, RAS-relate 98.5 3E-07 1E-11 63.5 6.2 41 12-52 4-44 (177)
211 1gwn_A RHO-related GTP-binding 98.5 2.7E-07 9.3E-12 66.0 6.1 41 12-52 25-65 (205)
212 4bas_A ADP-ribosylation factor 98.5 1.7E-07 5.9E-12 66.1 5.0 44 10-53 12-56 (199)
213 1oix_A RAS-related protein RAB 98.5 3.6E-07 1.2E-11 64.6 6.6 42 11-52 25-66 (191)
214 1m7b_A RND3/RHOE small GTP-bin 98.5 3E-07 1E-11 64.3 6.1 40 13-52 5-44 (184)
215 2oil_A CATX-8, RAS-related pro 98.5 2.3E-07 7.9E-12 65.3 5.5 43 10-52 20-62 (193)
216 2iwr_A Centaurin gamma 1; ANK 98.5 1.8E-07 6.3E-12 64.8 4.9 38 14-52 6-43 (178)
217 3bc1_A RAS-related protein RAB 98.5 2.3E-07 8E-12 64.9 5.5 43 11-53 7-49 (195)
218 2j1l_A RHO-related GTP-binding 98.5 1.9E-07 6.4E-12 67.1 5.0 40 13-52 32-71 (214)
219 2g3y_A GTP-binding protein GEM 98.5 2E-07 6.8E-12 67.2 5.2 36 11-46 33-70 (211)
220 2atx_A Small GTP binding prote 98.4 2.7E-07 9.4E-12 64.9 5.7 41 12-52 15-55 (194)
221 2atv_A RERG, RAS-like estrogen 98.4 2.5E-07 8.5E-12 65.4 5.4 39 14-52 27-65 (196)
222 3reg_A RHO-like small GTPase; 98.4 3.7E-07 1.3E-11 64.3 6.2 43 11-53 19-61 (194)
223 2a5j_A RAS-related protein RAB 98.4 2.7E-07 9.3E-12 64.9 5.4 42 9-50 15-56 (191)
224 2gf9_A RAS-related protein RAB 98.4 3.3E-07 1.1E-11 64.3 5.8 42 11-52 18-59 (189)
225 1z2a_A RAS-related protein RAB 98.4 3.1E-07 1.1E-11 62.8 5.4 39 13-51 3-41 (168)
226 2fg5_A RAB-22B, RAS-related pr 98.4 3.1E-07 1.1E-11 64.7 5.4 42 11-52 19-60 (192)
227 2bme_A RAB4A, RAS-related prot 98.4 5.4E-07 1.9E-11 62.8 6.6 40 12-51 7-46 (186)
228 1puj_A YLQF, conserved hypothe 98.4 2.6E-07 8.9E-12 69.6 5.2 59 84-146 118-176 (282)
229 3q3j_B RHO-related GTP-binding 98.4 3.5E-07 1.2E-11 65.8 5.6 41 13-53 25-65 (214)
230 2fu5_C RAS-related protein RAB 98.4 1.7E-07 5.7E-12 65.3 3.8 41 12-52 5-45 (183)
231 1zbd_A Rabphilin-3A; G protein 98.4 3.7E-07 1.3E-11 64.7 5.6 41 12-52 5-45 (203)
232 3dz8_A RAS-related protein RAB 98.4 1.4E-07 4.7E-12 66.4 3.3 40 11-50 19-58 (191)
233 1z0j_A RAB-22, RAS-related pro 98.4 3.7E-07 1.3E-11 62.5 5.3 41 12-52 3-43 (170)
234 2o52_A RAS-related protein RAB 98.4 3E-07 1E-11 65.4 4.9 40 11-50 21-60 (200)
235 3cpj_B GTP-binding protein YPT 98.4 2.3E-07 7.7E-12 67.1 4.3 40 11-50 9-48 (223)
236 3tkl_A RAS-related protein RAB 98.4 4E-07 1.4E-11 64.0 5.5 42 11-52 12-53 (196)
237 3clv_A RAB5 protein, putative; 98.4 5E-07 1.7E-11 63.6 6.0 41 13-53 5-45 (208)
238 3tw8_B RAS-related protein RAB 98.4 4.8E-07 1.6E-11 62.6 5.7 41 12-52 6-46 (181)
239 3gj0_A GTP-binding nuclear pro 98.4 1.8E-07 6.1E-12 67.4 3.7 42 11-52 11-52 (221)
240 2f9l_A RAB11B, member RAS onco 98.4 5.1E-07 1.7E-11 64.0 5.9 38 13-50 3-40 (199)
241 3kkq_A RAS-related protein M-R 98.4 6.5E-07 2.2E-11 62.3 6.4 41 12-52 15-55 (183)
242 1c1y_A RAS-related protein RAP 98.4 6.2E-07 2.1E-11 61.2 6.1 38 15-52 3-40 (167)
243 1z0f_A RAB14, member RAS oncog 98.4 6.2E-07 2.1E-11 61.9 6.1 41 11-51 11-51 (179)
244 2bcg_Y Protein YP2, GTP-bindin 98.4 3.8E-07 1.3E-11 64.9 5.0 41 12-52 5-45 (206)
245 2fn4_A P23, RAS-related protei 98.4 8.2E-07 2.8E-11 61.4 6.5 41 13-53 7-47 (181)
246 3t5g_A GTP-binding protein RHE 98.4 8.1E-07 2.8E-11 61.7 6.5 39 14-52 5-43 (181)
247 1g16_A RAS-related protein SEC 98.4 3.3E-07 1.1E-11 62.7 4.4 38 14-51 2-39 (170)
248 1r2q_A RAS-related protein RAB 98.4 4.6E-07 1.6E-11 62.0 5.1 40 13-52 4-43 (170)
249 1zd9_A ADP-ribosylation factor 98.4 6.5E-07 2.2E-11 62.8 5.9 41 13-53 20-60 (188)
250 2zej_A Dardarin, leucine-rich 98.4 2.9E-07 1E-11 64.5 4.0 39 15-53 2-42 (184)
251 2gf0_A GTP-binding protein DI- 98.4 5.7E-07 2E-11 63.3 5.5 39 14-52 7-45 (199)
252 2hxs_A RAB-26, RAS-related pro 98.4 3.2E-07 1.1E-11 63.4 4.2 38 13-50 4-41 (178)
253 2j0v_A RAC-like GTP-binding pr 98.4 7.3E-07 2.5E-11 63.7 6.1 39 14-52 8-46 (212)
254 2f7s_A C25KG, RAS-related prot 98.3 5.4E-07 1.8E-11 64.6 5.3 42 11-52 21-62 (217)
255 2erx_A GTP-binding protein DI- 98.3 7.2E-07 2.5E-11 61.1 5.7 38 15-52 3-40 (172)
256 1x3s_A RAS-related protein RAB 98.3 6.5E-07 2.2E-11 62.8 5.3 42 11-52 11-52 (195)
257 1kao_A RAP2A; GTP-binding prot 98.3 1E-06 3.4E-11 60.0 6.1 38 15-52 3-40 (167)
258 1vg8_A RAS-related protein RAB 98.3 6.8E-07 2.3E-11 63.4 5.3 40 13-52 6-45 (207)
259 3zvr_A Dynamin-1; hydrolase, D 98.3 5.1E-06 1.8E-10 70.2 11.1 35 77-111 42-76 (772)
260 1ek0_A Protein (GTP-binding pr 98.3 1.2E-06 4E-11 59.9 6.1 37 15-51 3-39 (170)
261 2bov_A RAla, RAS-related prote 98.3 1.1E-06 3.9E-11 62.1 6.2 41 12-52 11-51 (206)
262 2q3h_A RAS homolog gene family 98.3 7.1E-07 2.4E-11 63.1 5.1 41 12-52 17-57 (201)
263 1mh1_A RAC1; GTP-binding, GTPa 98.3 9.9E-07 3.4E-11 61.3 5.8 39 14-52 4-42 (186)
264 1z06_A RAS-related protein RAB 98.3 6.4E-07 2.2E-11 62.8 4.5 39 12-50 17-55 (189)
265 1u8z_A RAS-related protein RAL 98.3 1.4E-06 4.8E-11 59.3 6.1 38 15-52 4-41 (168)
266 3t1o_A Gliding protein MGLA; G 98.3 4.2E-07 1.4E-11 63.8 3.5 35 11-46 10-44 (198)
267 2il1_A RAB12; G-protein, GDP, 98.3 6.5E-07 2.2E-11 63.1 4.4 40 12-51 23-62 (192)
268 4dsu_A GTPase KRAS, isoform 2B 98.3 1.6E-06 5.5E-11 60.4 6.3 39 14-52 3-41 (189)
269 3oes_A GTPase rhebl1; small GT 98.3 1.1E-06 3.9E-11 62.2 5.6 40 13-52 22-61 (201)
270 3bwd_D RAC-like GTP-binding pr 98.3 4E-07 1.4E-11 63.2 3.0 37 14-50 7-43 (182)
271 2cjw_A GTP-binding protein GEM 98.3 1E-06 3.5E-11 62.3 5.1 33 14-46 5-39 (192)
272 2g6b_A RAS-related protein RAB 98.3 1.9E-06 6.6E-11 59.6 6.5 42 11-52 6-48 (180)
273 2h57_A ADP-ribosylation factor 98.3 8.9E-07 3E-11 62.1 4.6 42 12-53 18-60 (190)
274 2gco_A H9, RHO-related GTP-bin 98.3 1.5E-06 5E-11 61.7 5.7 40 13-52 23-62 (201)
275 1ky3_A GTP-binding protein YPT 98.3 1.2E-06 4E-11 60.6 5.1 38 13-50 6-43 (182)
276 2fh5_B SR-beta, signal recogni 98.2 8E-07 2.7E-11 63.6 4.3 36 14-49 6-41 (214)
277 1r8s_A ADP-ribosylation factor 98.2 8E-07 2.7E-11 60.6 4.1 36 16-52 1-36 (164)
278 2p5s_A RAS and EF-hand domain 98.2 5.4E-07 1.9E-11 63.8 3.3 39 12-50 25-63 (199)
279 2efe_B Small GTP-binding prote 98.2 1E-06 3.4E-11 61.1 4.6 39 12-50 9-47 (181)
280 3p32_A Probable GTPase RV1496/ 98.2 1.4E-06 4.7E-11 67.7 5.8 24 85-108 78-101 (355)
281 4gzl_A RAS-related C3 botulinu 98.2 1.5E-06 5.2E-11 61.9 5.6 40 13-52 28-67 (204)
282 2a9k_A RAS-related protein RAL 98.2 2.1E-06 7.3E-11 59.6 6.1 40 13-52 16-55 (187)
283 3j25_A Tetracycline resistance 98.2 1.2E-07 4.2E-12 78.9 -0.4 84 87-170 3-102 (638)
284 2ce2_X GTPase HRAS; signaling 98.2 2.3E-06 8E-11 58.0 6.1 38 15-52 3-40 (166)
285 4djt_A GTP-binding nuclear pro 98.2 1E-06 3.5E-11 63.2 4.4 42 12-53 8-49 (218)
286 2h17_A ADP-ribosylation factor 98.2 7E-07 2.4E-11 62.2 3.3 40 12-52 18-57 (181)
287 3l0i_B RAS-related protein RAB 98.2 3.7E-07 1.2E-11 64.7 1.7 40 11-50 29-68 (199)
288 3cph_A RAS-related protein SEC 98.2 1.9E-06 6.3E-11 61.4 5.3 41 11-51 16-56 (213)
289 3cbq_A GTP-binding protein REM 98.2 6.8E-07 2.3E-11 63.3 3.0 30 12-41 20-49 (195)
290 2fv8_A H6, RHO-related GTP-bin 98.2 2.1E-06 7.3E-11 61.1 5.5 39 14-52 24-62 (207)
291 1ksh_A ARF-like protein 2; sma 98.2 1.9E-06 6.5E-11 60.1 5.1 40 13-53 16-55 (186)
292 1zj6_A ADP-ribosylation factor 98.2 1.1E-06 3.7E-11 61.5 3.8 38 14-52 15-52 (187)
293 3con_A GTPase NRAS; structural 98.2 3.4E-06 1.1E-10 59.0 6.3 39 14-52 20-58 (190)
294 2nzj_A GTP-binding protein REM 98.2 2.1E-06 7.1E-11 59.0 5.1 32 14-45 3-34 (175)
295 1fzq_A ADP-ribosylation factor 98.2 1.3E-06 4.6E-11 60.9 4.0 39 13-52 14-52 (181)
296 2www_A Methylmalonic aciduria 98.2 1.3E-06 4.4E-11 67.7 4.1 24 85-108 73-96 (349)
297 1moz_A ARL1, ADP-ribosylation 98.2 9.7E-07 3.3E-11 61.3 3.1 39 13-52 16-54 (183)
298 1upt_A ARL1, ADP-ribosylation 98.2 2.6E-06 8.9E-11 58.3 5.2 37 15-52 7-43 (171)
299 2b6h_A ADP-ribosylation factor 98.1 1.8E-06 6.1E-11 60.9 4.1 38 14-52 28-65 (192)
300 4fn5_A EF-G 1, elongation fact 98.1 7.9E-06 2.7E-10 68.9 8.5 88 83-170 10-120 (709)
301 2cxx_A Probable GTP-binding pr 98.1 1.9E-06 6.5E-11 60.1 3.9 34 16-49 2-35 (190)
302 3q85_A GTP-binding protein REM 98.1 1.8E-06 6.1E-11 59.1 3.6 33 15-47 2-34 (169)
303 1m2o_B GTP-binding protein SAR 98.1 3.6E-06 1.2E-10 59.2 5.3 38 14-52 22-59 (190)
304 3c5h_A Glucocorticoid receptor 98.1 2.2E-06 7.7E-11 63.4 4.2 38 11-48 15-64 (255)
305 2x77_A ADP-ribosylation factor 98.1 2E-06 7E-11 60.1 3.5 39 13-52 20-58 (189)
306 2lkc_A Translation initiation 98.1 3.6E-06 1.2E-10 58.1 4.3 34 14-47 7-40 (178)
307 3h2y_A GTPase family protein; 98.1 6.2E-06 2.1E-10 64.3 6.0 102 55-168 138-254 (368)
308 2wji_A Ferrous iron transport 98.1 3.1E-06 1.1E-10 58.1 3.8 31 16-46 4-34 (165)
309 1f6b_A SAR1; gtpases, N-termin 98.0 3.1E-06 1E-10 60.0 3.7 37 14-51 24-60 (198)
310 3ec1_A YQEH GTPase; atnos1, at 98.0 6.6E-06 2.3E-10 64.2 5.8 101 55-168 140-255 (369)
311 1svi_A GTP-binding protein YSX 98.0 1.5E-06 5.1E-11 61.0 2.0 36 13-48 21-56 (195)
312 2yc2_C IFT27, small RAB-relate 98.0 1.1E-06 3.7E-11 62.3 1.2 37 13-49 18-56 (208)
313 2p67_A LAO/AO transport system 98.0 1.6E-06 5.5E-11 66.9 1.8 34 135-171 149-182 (341)
314 2wjg_A FEOB, ferrous iron tran 98.0 7.4E-06 2.5E-10 57.1 5.1 34 14-47 6-39 (188)
315 1bif_A 6-phosphofructo-2-kinas 98.0 1.3E-07 4.4E-12 76.1 -5.3 87 85-172 38-134 (469)
316 3th5_A RAS-related C3 botulinu 97.2 1.1E-06 3.7E-11 62.5 0.0 40 13-52 28-67 (204)
317 3q72_A GTP-binding protein RAD 97.9 6.8E-06 2.3E-10 56.0 3.8 27 15-41 2-28 (166)
318 1yrb_A ATP(GTP)binding protein 97.9 1.3E-05 4.5E-10 59.0 5.4 26 82-107 10-35 (262)
319 1f5n_A Interferon-induced guan 97.9 1.4E-05 4.7E-10 65.9 5.9 62 84-147 36-103 (592)
320 2wkq_A NPH1-1, RAS-related C3 97.9 1.6E-05 5.3E-10 60.4 5.8 39 14-52 154-192 (332)
321 3r7w_B Gtpase2, GTP-binding pr 97.9 6.5E-06 2.2E-10 63.1 3.4 37 17-53 1-40 (331)
322 3r7w_A Gtpase1, GTP-binding pr 97.9 1.5E-05 5E-10 60.6 5.3 40 15-54 3-45 (307)
323 3pqc_A Probable GTP-binding pr 97.8 1.6E-05 5.4E-10 55.5 4.3 28 13-40 21-48 (195)
324 3dpu_A RAB family protein; roc 97.8 1E-05 3.4E-10 66.1 3.7 42 12-53 38-79 (535)
325 1nrj_B SR-beta, signal recogni 97.8 1.2E-05 4E-10 57.5 3.3 30 13-42 10-39 (218)
326 2hf9_A Probable hydrogenase ni 97.8 8.9E-06 3E-10 58.6 2.6 36 14-49 37-72 (226)
327 2ged_A SR-beta, signal recogni 97.8 1.1E-05 3.6E-10 56.6 2.9 30 13-42 46-75 (193)
328 3llu_A RAS-related GTP-binding 97.8 1.4E-05 4.7E-10 56.4 3.4 32 11-43 16-47 (196)
329 3o47_A ADP-ribosylation factor 97.8 1.5E-05 5E-10 61.2 3.8 39 14-53 164-202 (329)
330 2gj8_A MNME, tRNA modification 97.8 4.1E-05 1.4E-09 52.9 5.7 26 15-40 4-29 (172)
331 3a1s_A Iron(II) transport prot 97.8 3.6E-05 1.2E-09 57.0 5.3 30 13-42 3-32 (258)
332 2dyk_A GTP-binding protein; GT 97.7 2E-05 6.7E-10 53.3 3.4 25 16-40 2-26 (161)
333 2qu8_A Putative nucleolar GTP- 97.7 1.9E-05 6.5E-10 57.0 3.3 28 14-41 28-55 (228)
334 3lxx_A GTPase IMAP family memb 97.7 4.1E-05 1.4E-09 55.8 4.8 33 12-44 26-58 (239)
335 3sop_A Neuronal-specific septi 97.7 2.5E-05 8.6E-10 58.3 3.6 25 86-110 2-26 (270)
336 2qm8_A GTPase/ATPase; G protei 97.6 5.4E-05 1.8E-09 58.3 4.9 23 86-108 55-77 (337)
337 3t5d_A Septin-7; GTP-binding p 97.6 5.5E-05 1.9E-09 56.4 4.6 31 14-44 7-38 (274)
338 3b1v_A Ferrous iron uptake tra 97.6 3.8E-05 1.3E-09 57.4 3.6 26 15-40 3-28 (272)
339 3k53_A Ferrous iron transport 97.6 6E-05 2.1E-09 56.0 4.7 33 15-47 3-35 (271)
340 3lvq_E ARF-GAP with SH3 domain 97.6 8.3E-05 2.8E-09 60.0 5.5 41 13-54 320-360 (497)
341 1pui_A ENGB, probable GTP-bind 97.6 2.6E-05 8.9E-10 55.3 2.2 36 14-49 25-60 (210)
342 2xtp_A GTPase IMAP family memb 97.5 6.7E-05 2.3E-09 55.3 3.8 32 14-45 21-53 (260)
343 2qag_B Septin-6, protein NEDD5 97.5 0.00027 9.2E-09 56.0 7.2 27 85-111 41-67 (427)
344 1wf3_A GTP-binding protein; GT 97.5 8.4E-05 2.9E-09 56.3 4.1 28 14-41 6-33 (301)
345 3i8s_A Ferrous iron transport 97.5 0.00014 4.6E-09 54.3 5.0 28 16-43 4-31 (274)
346 4dhe_A Probable GTP-binding pr 97.5 4.4E-05 1.5E-09 54.7 2.1 28 13-40 27-54 (223)
347 3lxw_A GTPase IMAP family memb 97.4 8.7E-05 3E-09 54.5 3.6 30 12-41 18-47 (247)
348 2j37_W Signal recognition part 97.4 0.00084 2.9E-08 54.4 9.2 24 84-107 99-122 (504)
349 3iby_A Ferrous iron transport 97.4 0.00018 6E-09 53.2 4.6 26 17-42 3-28 (256)
350 3def_A T7I23.11 protein; chlor 97.4 0.00015 5.2E-09 53.6 4.0 27 14-40 35-61 (262)
351 2aka_B Dynamin-1; fusion prote 97.3 0.00011 3.7E-09 55.1 3.1 29 13-41 24-52 (299)
352 1h65_A Chloroplast outer envel 97.3 0.00016 5.3E-09 53.7 3.6 27 14-40 38-64 (270)
353 2qnr_A Septin-2, protein NEDD5 97.2 0.00014 4.9E-09 55.0 2.6 32 12-43 15-47 (301)
354 3q5d_A Atlastin-1; G protein, 97.2 0.00044 1.5E-08 55.1 5.3 25 84-108 65-89 (447)
355 3l82_B F-box only protein 4; T 97.1 0.00018 6.1E-09 51.7 2.3 32 141-172 108-139 (227)
356 2qag_A Septin-2, protein NEDD5 97.1 0.00018 6E-09 55.9 2.4 32 13-44 35-67 (361)
357 2qag_C Septin-7; cell cycle, c 97.1 0.00026 9E-09 56.0 3.3 29 12-40 28-56 (418)
358 1ye8_A Protein THEP1, hypothet 97.1 0.00033 1.1E-08 48.9 3.2 22 88-109 2-23 (178)
359 3iev_A GTP-binding protein ERA 97.0 0.00046 1.6E-08 52.3 3.9 30 12-41 7-36 (308)
360 1kgd_A CASK, peripheral plasma 97.0 0.00036 1.2E-08 48.6 3.0 22 88-109 7-28 (180)
361 1lvg_A Guanylate kinase, GMP k 96.9 0.00051 1.7E-08 48.6 3.0 21 88-108 6-26 (198)
362 1ega_A Protein (GTP-binding pr 96.9 0.00069 2.4E-08 51.2 3.7 28 14-41 7-34 (301)
363 2x2e_A Dynamin-1; nitration, h 96.9 0.00045 1.5E-08 53.4 2.5 29 14-42 30-58 (353)
364 3t34_A Dynamin-related protein 96.9 0.00076 2.6E-08 52.2 3.7 29 15-43 34-62 (360)
365 1zp6_A Hypothetical protein AT 96.8 0.00068 2.3E-08 47.3 3.1 22 88-109 11-32 (191)
366 1jal_A YCHF protein; nucleotid 96.8 0.00069 2.4E-08 52.6 3.3 25 16-40 3-27 (363)
367 3c8u_A Fructokinase; YP_612366 96.8 0.0014 4.7E-08 46.6 4.7 24 85-108 21-44 (208)
368 3ney_A 55 kDa erythrocyte memb 96.8 0.00071 2.4E-08 48.1 3.0 22 88-109 21-42 (197)
369 1ex7_A Guanylate kinase; subst 96.8 0.00072 2.5E-08 47.6 3.0 21 89-109 4-24 (186)
370 3tr0_A Guanylate kinase, GMP k 96.8 0.00074 2.5E-08 47.5 3.0 22 88-109 9-30 (205)
371 3gee_A MNME, tRNA modification 96.8 0.00054 1.8E-08 55.1 2.5 25 15-39 233-257 (476)
372 3a00_A Guanylate kinase, GMP k 96.8 0.00072 2.5E-08 47.2 2.9 21 89-109 4-24 (186)
373 1s96_A Guanylate kinase, GMP k 96.8 0.00077 2.6E-08 48.6 3.0 23 88-110 18-40 (219)
374 3cnl_A YLQF, putative uncharac 96.8 0.0008 2.7E-08 49.9 3.1 25 16-40 100-124 (262)
375 3geh_A MNME, tRNA modification 96.8 0.00064 2.2E-08 54.5 2.6 27 14-40 223-249 (462)
376 1znw_A Guanylate kinase, GMP k 96.7 0.00084 2.9E-08 47.7 3.0 22 88-109 22-43 (207)
377 1z6g_A Guanylate kinase; struc 96.7 0.0009 3.1E-08 48.1 3.0 22 88-109 25-46 (218)
378 3tau_A Guanylate kinase, GMP k 96.7 0.00094 3.2E-08 47.6 3.0 22 88-109 10-31 (208)
379 1jwy_B Dynamin A GTPase domain 96.7 0.00088 3E-08 50.5 3.0 29 13-41 22-50 (315)
380 2wsm_A Hydrogenase expression/ 96.7 0.00095 3.3E-08 47.6 2.8 26 15-40 30-55 (221)
381 4gp7_A Metallophosphoesterase; 96.7 0.00079 2.7E-08 46.5 2.3 18 88-105 11-28 (171)
382 2qtf_A Protein HFLX, GTP-bindi 96.7 0.0017 5.8E-08 50.5 4.3 25 16-40 179-204 (364)
383 1wxq_A GTP-binding protein; st 96.6 0.00093 3.2E-08 52.5 2.7 25 16-40 1-25 (397)
384 1xzp_A Probable tRNA modificat 96.6 0.0007 2.4E-08 54.6 2.0 25 16-40 244-268 (482)
385 2e87_A Hypothetical protein PH 96.6 0.00098 3.3E-08 51.5 2.8 27 14-40 166-192 (357)
386 3l2o_B F-box only protein 4; s 96.6 0.00044 1.5E-08 52.0 0.8 32 142-173 194-225 (312)
387 1kag_A SKI, shikimate kinase I 96.6 0.0013 4.3E-08 45.1 3.0 22 88-109 6-27 (173)
388 2qor_A Guanylate kinase; phosp 96.6 0.0012 4.2E-08 46.7 3.0 23 87-109 13-35 (204)
389 1ex7_A Guanylate kinase; subst 96.6 0.0011 3.8E-08 46.6 2.7 21 18-38 4-24 (186)
390 3ney_A 55 kDa erythrocyte memb 96.6 0.0017 5.8E-08 46.1 3.5 22 17-38 21-42 (197)
391 3sop_A Neuronal-specific septi 96.6 0.0014 4.8E-08 48.8 3.2 26 14-39 1-26 (270)
392 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.5E-08 44.8 2.9 22 88-109 3-24 (173)
393 2cdn_A Adenylate kinase; phosp 96.5 0.0017 5.9E-08 45.7 3.5 28 81-108 15-42 (201)
394 1htw_A HI0065; nucleotide-bind 96.5 0.0015 5.1E-08 44.7 3.0 23 88-110 35-57 (158)
395 1puj_A YLQF, conserved hypothe 96.5 0.0016 5.6E-08 48.7 3.3 26 14-39 119-144 (282)
396 2j41_A Guanylate kinase; GMP, 96.5 0.0016 5.3E-08 45.9 3.0 24 87-110 7-30 (207)
397 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.7E-08 45.3 3.0 21 88-108 4-24 (189)
398 1ly1_A Polynucleotide kinase; 96.5 0.0017 5.7E-08 44.6 3.0 21 88-108 4-24 (181)
399 4eun_A Thermoresistant glucoki 96.5 0.0017 5.8E-08 45.8 3.0 22 87-108 30-51 (200)
400 1kgd_A CASK, peripheral plasma 96.5 0.0015 5.2E-08 45.3 2.7 22 17-38 7-28 (180)
401 3vaa_A Shikimate kinase, SK; s 96.5 0.0019 6.6E-08 45.5 3.2 21 88-108 27-47 (199)
402 3ec2_A DNA replication protein 96.4 0.0014 4.7E-08 45.4 2.3 23 87-109 39-61 (180)
403 2rcn_A Probable GTPase ENGC; Y 96.4 0.0016 5.5E-08 50.5 2.9 24 88-111 217-240 (358)
404 1lvg_A Guanylate kinase, GMP k 96.4 0.0014 4.9E-08 46.3 2.4 21 17-37 6-26 (198)
405 3lw7_A Adenylate kinase relate 96.4 0.0018 6E-08 44.1 2.8 19 88-106 3-21 (179)
406 3qq5_A Small GTP-binding prote 96.4 0.0013 4.5E-08 52.1 2.3 28 13-40 32-59 (423)
407 3tif_A Uncharacterized ABC tra 96.4 0.0016 5.6E-08 47.4 2.7 22 88-109 33-54 (235)
408 3fb4_A Adenylate kinase; psych 96.4 0.0022 7.4E-08 45.6 3.2 21 88-108 2-22 (216)
409 3dl0_A Adenylate kinase; phosp 96.4 0.0022 7.5E-08 45.6 3.2 21 88-108 2-22 (216)
410 2bbw_A Adenylate kinase 4, AK4 96.4 0.0021 7.2E-08 46.8 3.1 21 87-107 28-48 (246)
411 1qhx_A CPT, protein (chloramph 96.4 0.0021 7E-08 44.2 3.0 22 88-109 5-26 (178)
412 2pcj_A ABC transporter, lipopr 96.4 0.0018 6.3E-08 46.8 2.8 22 88-109 32-53 (224)
413 2i3b_A HCR-ntpase, human cance 96.4 0.0019 6.4E-08 45.5 2.8 22 88-109 3-24 (189)
414 3t61_A Gluconokinase; PSI-biol 96.4 0.0021 7.3E-08 45.2 3.0 23 87-109 19-41 (202)
415 3izy_P Translation initiation 96.4 0.00089 3E-08 54.6 1.1 31 15-45 4-34 (537)
416 1nks_A Adenylate kinase; therm 96.3 0.0026 8.8E-08 44.1 3.3 21 88-108 3-23 (194)
417 1knq_A Gluconate kinase; ALFA/ 96.3 0.0024 8E-08 43.9 3.0 22 87-108 9-30 (175)
418 1jbk_A CLPB protein; beta barr 96.3 0.0023 8E-08 43.9 3.0 23 87-109 44-66 (195)
419 2onk_A Molybdate/tungstate ABC 96.3 0.0023 7.8E-08 46.8 3.0 22 88-109 26-47 (240)
420 3tau_A Guanylate kinase, GMP k 96.3 0.003 1E-07 44.9 3.6 22 17-38 10-31 (208)
421 4a74_A DNA repair and recombin 96.3 0.0024 8.3E-08 45.6 3.1 22 88-109 27-48 (231)
422 3trf_A Shikimate kinase, SK; a 96.3 0.0027 9.4E-08 43.9 3.2 22 87-108 6-27 (185)
423 2if2_A Dephospho-COA kinase; a 96.3 0.0028 9.5E-08 44.6 3.3 22 87-108 2-23 (204)
424 3uie_A Adenylyl-sulfate kinase 96.3 0.0025 8.4E-08 45.0 3.0 23 87-109 26-48 (200)
425 2jaq_A Deoxyguanosine kinase; 96.3 0.0028 9.5E-08 44.4 3.2 21 88-108 2-22 (205)
426 3sr0_A Adenylate kinase; phosp 96.3 0.0028 9.5E-08 45.3 3.2 22 88-109 2-23 (206)
427 3sjy_A Translation initiation 96.3 0.0029 9.8E-08 49.7 3.6 25 14-38 7-31 (403)
428 2ohf_A Protein OLA1, GTP-bindi 96.3 0.0016 5.6E-08 51.1 2.1 27 14-40 21-47 (396)
429 3asz_A Uridine kinase; cytidin 96.3 0.0032 1.1E-07 44.5 3.5 23 87-109 7-29 (211)
430 1u0l_A Probable GTPase ENGC; p 96.3 0.0027 9.1E-08 47.9 3.2 24 88-111 171-194 (301)
431 1b0u_A Histidine permease; ABC 96.2 0.0023 7.8E-08 47.4 2.6 22 88-109 34-55 (262)
432 3fvq_A Fe(3+) IONS import ATP- 96.2 0.0091 3.1E-07 46.3 6.0 23 88-110 32-54 (359)
433 3b85_A Phosphate starvation-in 96.2 0.0026 8.7E-08 45.5 2.7 22 88-109 24-45 (208)
434 2rhm_A Putative kinase; P-loop 96.2 0.003 1E-07 43.8 3.1 22 87-108 6-27 (193)
435 1tq4_A IIGP1, interferon-induc 96.2 0.0044 1.5E-07 48.9 4.3 25 86-110 69-93 (413)
436 2kjq_A DNAA-related protein; s 96.2 0.0026 8.7E-08 43.0 2.5 22 88-109 38-59 (149)
437 1kht_A Adenylate kinase; phosp 96.2 0.003 1E-07 43.7 3.0 22 87-108 4-25 (192)
438 1sgw_A Putative ABC transporte 96.2 0.0025 8.6E-08 45.8 2.6 22 88-109 37-58 (214)
439 2cbz_A Multidrug resistance-as 96.2 0.0028 9.4E-08 46.2 2.9 22 88-109 33-54 (237)
440 2ehv_A Hypothetical protein PH 96.2 0.0028 9.6E-08 45.8 2.9 20 88-107 32-51 (251)
441 2v9p_A Replication protein E1; 96.2 0.003 1E-07 47.9 3.1 21 88-108 128-148 (305)
442 3gfo_A Cobalt import ATP-bindi 96.2 0.0025 8.6E-08 47.6 2.6 22 88-109 36-57 (275)
443 1cke_A CK, MSSA, protein (cyti 96.2 0.0033 1.1E-07 44.9 3.2 22 87-108 6-27 (227)
444 1g6h_A High-affinity branched- 96.2 0.0026 8.8E-08 46.9 2.7 22 88-109 35-56 (257)
445 2ff7_A Alpha-hemolysin translo 96.2 0.0029 9.9E-08 46.4 2.9 22 88-109 37-58 (247)
446 1zp6_A Hypothetical protein AT 96.2 0.0034 1.1E-07 43.6 3.1 22 17-38 11-32 (191)
447 1ye8_A Protein THEP1, hypothet 96.2 0.0031 1.1E-07 43.9 2.9 21 17-37 2-22 (178)
448 1e4v_A Adenylate kinase; trans 96.1 0.0036 1.2E-07 44.5 3.3 21 88-108 2-22 (214)
449 1np6_A Molybdopterin-guanine d 96.1 0.0034 1.2E-07 43.6 3.0 22 88-109 8-29 (174)
450 1mv5_A LMRA, multidrug resista 96.1 0.003 1E-07 46.2 2.9 22 88-109 30-51 (243)
451 2d2e_A SUFC protein; ABC-ATPas 96.1 0.0031 1.1E-07 46.3 3.0 22 88-109 31-52 (250)
452 2x8a_A Nuclear valosin-contain 96.1 0.0031 1.1E-07 46.9 3.0 21 89-109 47-67 (274)
453 3cm0_A Adenylate kinase; ATP-b 96.1 0.0044 1.5E-07 42.8 3.6 22 87-108 5-26 (186)
454 1via_A Shikimate kinase; struc 96.1 0.0032 1.1E-07 43.3 2.8 21 88-108 6-26 (175)
455 2yv5_A YJEQ protein; hydrolase 96.1 0.0031 1E-07 47.7 2.9 19 89-107 168-186 (302)
456 1ji0_A ABC transporter; ATP bi 96.1 0.0028 9.7E-08 46.2 2.7 22 88-109 34-55 (240)
457 2olj_A Amino acid ABC transpor 96.1 0.0028 9.5E-08 47.0 2.6 22 88-109 52-73 (263)
458 4g1u_C Hemin import ATP-bindin 96.1 0.0028 9.4E-08 47.1 2.6 22 88-109 39-60 (266)
459 2zu0_C Probable ATP-dependent 96.1 0.0032 1.1E-07 46.7 3.0 22 88-109 48-69 (267)
460 1s96_A Guanylate kinase, GMP k 96.1 0.0039 1.3E-07 44.9 3.3 22 17-38 18-39 (219)
461 2dby_A GTP-binding protein; GD 96.1 0.0021 7E-08 50.1 2.0 24 16-39 2-25 (368)
462 3lnc_A Guanylate kinase, GMP k 96.1 0.002 6.9E-08 46.4 1.8 22 88-109 29-51 (231)
463 2qpt_A EH domain-containing pr 96.1 0.0036 1.2E-07 51.2 3.5 29 13-41 63-91 (550)
464 1jjv_A Dephospho-COA kinase; P 96.1 0.0042 1.5E-07 43.8 3.4 22 87-108 3-24 (206)
465 2pze_A Cystic fibrosis transme 96.1 0.003 1E-07 45.8 2.6 22 88-109 36-57 (229)
466 1ixz_A ATP-dependent metallopr 96.1 0.0033 1.1E-07 45.9 3.0 21 89-109 52-72 (254)
467 2eyu_A Twitching motility prot 96.1 0.0035 1.2E-07 46.4 3.0 21 88-108 27-47 (261)
468 3tlx_A Adenylate kinase 2; str 96.1 0.0043 1.5E-07 45.2 3.5 23 86-108 29-51 (243)
469 1lnz_A SPO0B-associated GTP-bi 96.1 0.0019 6.6E-08 49.7 1.6 24 17-40 160-183 (342)
470 2ixe_A Antigen peptide transpo 96.1 0.0031 1.1E-07 46.9 2.7 22 88-109 47-68 (271)
471 2qi9_C Vitamin B12 import ATP- 96.1 0.0031 1.1E-07 46.3 2.6 22 88-109 28-49 (249)
472 2qt1_A Nicotinamide riboside k 96.1 0.0058 2E-07 43.1 4.0 25 85-109 20-44 (207)
473 3a00_A Guanylate kinase, GMP k 96.0 0.0033 1.1E-07 43.8 2.6 21 18-38 4-24 (186)
474 1vpl_A ABC transporter, ATP-bi 96.0 0.0032 1.1E-07 46.5 2.6 22 88-109 43-64 (256)
475 2ghi_A Transport protein; mult 96.0 0.0036 1.2E-07 46.3 2.9 22 88-109 48-69 (260)
476 3foz_A TRNA delta(2)-isopenten 96.0 0.005 1.7E-07 46.8 3.7 33 1-38 1-33 (316)
477 1t9h_A YLOQ, probable GTPase E 96.0 0.0011 3.6E-08 50.4 -0.1 24 87-110 174-197 (307)
478 2ihy_A ABC transporter, ATP-bi 96.0 0.0037 1.3E-07 46.8 2.9 22 88-109 49-70 (279)
479 1lw7_A Transcriptional regulat 96.0 0.0031 1E-07 48.8 2.5 24 86-109 170-193 (365)
480 3p26_A Elongation factor 1 alp 96.0 0.0026 9E-08 51.2 2.2 25 14-38 32-56 (483)
481 1y63_A LMAJ004144AAA protein; 96.0 0.0048 1.6E-07 42.9 3.2 23 87-109 11-33 (184)
482 1kk1_A EIF2gamma; initiation o 96.0 0.01 3.6E-07 46.6 5.5 24 13-36 8-31 (410)
483 1aky_A Adenylate kinase; ATP:A 96.0 0.0046 1.6E-07 44.1 3.2 22 87-108 5-26 (220)
484 3aez_A Pantothenate kinase; tr 96.0 0.0041 1.4E-07 47.2 3.0 25 84-108 88-112 (312)
485 1zd8_A GTP:AMP phosphotransfer 96.0 0.0049 1.7E-07 44.2 3.3 22 87-108 8-29 (227)
486 2p65_A Hypothetical protein PF 96.0 0.0033 1.1E-07 43.0 2.3 23 87-109 44-66 (187)
487 2nq2_C Hypothetical ABC transp 95.9 0.0037 1.3E-07 46.1 2.6 22 88-109 33-54 (253)
488 2plr_A DTMP kinase, probable t 95.9 0.0053 1.8E-07 43.2 3.4 22 87-108 5-26 (213)
489 2yz2_A Putative ABC transporte 95.9 0.0038 1.3E-07 46.3 2.7 22 88-109 35-56 (266)
490 3izq_1 HBS1P, elongation facto 95.9 0.0036 1.2E-07 51.9 2.8 25 14-38 166-190 (611)
491 1gvn_B Zeta; postsegregational 95.9 0.0072 2.5E-07 45.3 4.2 24 85-108 32-55 (287)
492 3bos_A Putative DNA replicatio 95.9 0.0046 1.6E-07 44.2 3.0 23 87-109 53-75 (242)
493 3trf_A Shikimate kinase, SK; a 95.9 0.0052 1.8E-07 42.4 3.2 21 17-37 7-27 (185)
494 1tev_A UMP-CMP kinase; ploop, 95.9 0.0056 1.9E-07 42.4 3.4 22 87-108 4-25 (196)
495 1in4_A RUVB, holliday junction 95.9 0.0043 1.5E-07 47.4 2.9 22 88-109 53-74 (334)
496 3iij_A Coilin-interacting nucl 95.9 0.0048 1.7E-07 42.5 3.0 22 87-108 12-33 (180)
497 1zun_B Sulfate adenylate trans 95.9 0.0058 2E-07 48.4 3.7 27 13-39 22-48 (434)
498 2j69_A Bacterial dynamin-like 95.9 0.0048 1.7E-07 51.9 3.4 27 14-40 68-94 (695)
499 2www_A Methylmalonic aciduria 95.9 0.0048 1.6E-07 47.6 3.1 24 15-38 74-97 (349)
500 3umf_A Adenylate kinase; rossm 95.9 0.0051 1.8E-07 44.3 3.1 21 89-109 32-52 (217)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=1.2e-25 Score=164.19 Aligned_cols=90 Identities=37% Similarity=0.684 Sum_probs=75.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...|||+++|++|||||||++||+.+.|...+.||++.++....+.+++..+.++||||+|+++|..+++.|++.+++++
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~i 90 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAV 90 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEE
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEE
Confidence 35689999999999999999999999999999999999998888999999999999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 91 lv~di~~~~S 100 (216)
T 4dkx_A 91 VVYDITNVNS 100 (216)
T ss_dssp EEEETTCHHH
T ss_pred EEeecchhHH
Confidence 9999999764
No 2
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1e-21 Score=141.68 Aligned_cols=95 Identities=47% Similarity=0.915 Sum_probs=85.3
Q ss_pred CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157 (173)
Q Consensus 78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 157 (173)
..+..++..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+++|||+|+++|..++..+++
T Consensus 18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 97 (201)
T 2ew1_A 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYR 97 (201)
T ss_dssp ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGST
T ss_pred CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHh
Confidence 34455678899999999999999999999999999889999999888888889999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.+|++|+|||+++++
T Consensus 98 ~~d~~i~v~D~~~~~ 112 (201)
T 2ew1_A 98 SANALILTYDITCEE 112 (201)
T ss_dssp TCSEEEEEEETTCHH
T ss_pred cCCEEEEEEECCCHH
Confidence 999999999999864
No 3
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=141.32 Aligned_cols=94 Identities=44% Similarity=0.902 Sum_probs=75.1
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
.++..+..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..+.+.+||++|+++|..++..+++.
T Consensus 22 ~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 101 (201)
T 2hup_A 22 PDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRS 101 (201)
T ss_dssp ----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTT
T ss_pred cccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhh
Confidence 34556778999999999999999999999999988888999988878888889999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 102 ~d~iilv~D~~~~~ 115 (201)
T 2hup_A 102 ANGAILAYDITKRS 115 (201)
T ss_dssp CSEEEEEEETTBHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999999864
No 4
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.85 E-value=2.9e-21 Score=140.49 Aligned_cols=91 Identities=21% Similarity=0.444 Sum_probs=79.1
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.|||++|+++|..+++.+++.+|+
T Consensus 23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ 101 (214)
T 3q3j_B 23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDA 101 (214)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSE
T ss_pred CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeE
Confidence 345679999999999999999999999999999999999887 4566778889999999999999999999999999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
+|+|||+++++|
T Consensus 102 ~i~v~d~~~~~s 113 (214)
T 3q3j_B 102 VLLCFDISRPET 113 (214)
T ss_dssp EEEEEETTCTHH
T ss_pred EEEEEECcCHHH
Confidence 999999999764
No 5
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.85 E-value=5.2e-21 Score=136.47 Aligned_cols=95 Identities=49% Similarity=0.899 Sum_probs=85.5
Q ss_pred CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc
Q psy13826 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR 157 (173)
Q Consensus 78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 157 (173)
...+..+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++
T Consensus 17 ~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 96 (193)
T 2oil_A 17 RGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYR 96 (193)
T ss_dssp ---CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHT
T ss_pred ccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhc
Confidence 34455678899999999999999999999999998888999998888888888999999999999999999999999999
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.+|++|+|||+++++
T Consensus 97 ~~d~vi~v~D~~~~~ 111 (193)
T 2oil_A 97 GAVGALLVFDLTKHQ 111 (193)
T ss_dssp TCCEEEEEEETTCHH
T ss_pred cCCEEEEEEECCCHH
Confidence 999999999999864
No 6
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.85 E-value=5.1e-21 Score=136.49 Aligned_cols=94 Identities=64% Similarity=1.074 Sum_probs=81.6
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
........+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 14 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 93 (191)
T 2a5j_A 14 LVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRG 93 (191)
T ss_dssp CCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhcc
Confidence 44556778999999999999999999999999988888899988888888889999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 94 ~d~ii~v~d~~~~~ 107 (191)
T 2a5j_A 94 AAGALLVYDITRRE 107 (191)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999999864
No 7
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.85 E-value=6.9e-21 Score=133.70 Aligned_cols=90 Identities=34% Similarity=0.651 Sum_probs=82.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 11 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 90 (179)
T 2y8e_A 11 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVA 90 (179)
T ss_dssp -CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEE
Confidence 34569999999999999999999999999988999999888888888999999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|||+++++
T Consensus 91 i~v~d~~~~~ 100 (179)
T 2y8e_A 91 VVVYDITNTN 100 (179)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999864
No 8
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=2.3e-21 Score=154.96 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=60.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc----------cccccch
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ----------ERFRAVT 152 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~ 152 (173)
..+||+++|++|||||||++++++.++. ..+..|. .+.....+..++. .+.+|||+|+ +.|..++
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT-~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~ 250 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTT-RDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLR 250 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCce-eeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHH
Confidence 4689999999999999999999998763 3333332 2333345556665 4789999998 5555444
Q ss_pred h-hhhcCCCEEEEEEeCCCCCC
Q psy13826 153 R-SYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 153 ~-~~~~~~~~~ilv~d~t~~~S 173 (173)
. .+++.+|++|+|||+++..+
T Consensus 251 ~~~~~~~ad~~llv~D~~~~~s 272 (436)
T 2hjg_A 251 ALKAIDRSEVVAVVLDGEEGII 272 (436)
T ss_dssp HHHHHHHCSEEEEEEETTTCCC
T ss_pred HHHHHHhCCEEEEEEcCCcCCc
Confidence 4 47889999999999998653
No 9
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.85 E-value=8e-21 Score=134.49 Aligned_cols=91 Identities=66% Similarity=1.186 Sum_probs=84.3
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
..+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 85 (186)
T 2bme_A 6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAG 85 (186)
T ss_dssp CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSE
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCE
Confidence 34678999999999999999999999999998899999988888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 86 ~i~v~d~~~~~ 96 (186)
T 2bme_A 86 ALLVYDITSRE 96 (186)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999999864
No 10
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.85 E-value=6.8e-21 Score=136.91 Aligned_cols=92 Identities=40% Similarity=0.849 Sum_probs=84.7
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
..++..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 34567899999999999999999999999998888999998888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 83 ~ii~v~d~~~~~ 94 (203)
T 1zbd_A 83 GFILMYDITNEE 94 (203)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECcCHH
Confidence 999999999864
No 11
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.85 E-value=9.4e-21 Score=131.85 Aligned_cols=88 Identities=38% Similarity=0.695 Sum_probs=82.1
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 35899999999999999999999999988899999988888888889999999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 82 v~d~~~~~ 89 (170)
T 1ek0_A 82 VYDVTKPQ 89 (170)
T ss_dssp EEETTCHH
T ss_pred EEecCChH
Confidence 99999864
No 12
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.85 E-value=9.5e-21 Score=135.28 Aligned_cols=92 Identities=39% Similarity=0.648 Sum_probs=83.7
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
+.++..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 97 (192)
T 2fg5_A 18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSA 97 (192)
T ss_dssp ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCS
T ss_pred cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCC
Confidence 44567899999999999999999999999998889999999888888888888999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 98 ~iilV~d~~~~~ 109 (192)
T 2fg5_A 98 AAVIVYDITKQD 109 (192)
T ss_dssp EEEEEEETTCTH
T ss_pred EEEEEEeCCCHH
Confidence 999999999875
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=1.3e-20 Score=134.00 Aligned_cols=92 Identities=41% Similarity=0.864 Sum_probs=84.5
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+..++..+.+.+||++|++++..++..+++.+|
T Consensus 17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 96 (189)
T 2gf9_A 17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAM 96 (189)
T ss_dssp TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCS
T ss_pred cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCC
Confidence 34567899999999999999999999999998888899998888788888899999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 97 ~ii~v~d~~~~~ 108 (189)
T 2gf9_A 97 GFLLMYDIANQE 108 (189)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999864
No 14
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.85 E-value=9.5e-21 Score=135.31 Aligned_cols=91 Identities=26% Similarity=0.478 Sum_probs=81.6
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......+||+++|++|||||||+++|+++.+...+.+|++.++. ..+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 96 (194)
T 3reg_A 18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSD 96 (194)
T ss_dssp ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCS
T ss_pred cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCc
Confidence 34567899999999999999999999999999999999998775 46678999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 97 ~~i~v~d~~~~~ 108 (194)
T 3reg_A 97 VVLLCFAVNNRT 108 (194)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999865
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=8e-21 Score=133.58 Aligned_cols=91 Identities=54% Similarity=0.966 Sum_probs=81.6
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
..+..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 84 (181)
T 3tw8_B 5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHG 84 (181)
T ss_dssp -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSE
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCE
Confidence 45678999999999999999999999999988899999988888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 85 ~i~v~d~~~~~ 95 (181)
T 3tw8_B 85 VIVVYDVTSAE 95 (181)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999999864
No 16
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=9.4e-21 Score=133.01 Aligned_cols=92 Identities=88% Similarity=1.442 Sum_probs=84.3
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
...+..+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|
T Consensus 10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 89 (179)
T 1z0f_A 10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAA 89 (179)
T ss_dssp -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCS
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCC
Confidence 34567899999999999999999999999998889999998888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 90 ~~i~v~d~~~~~ 101 (179)
T 1z0f_A 90 GALMVYDITRRS 101 (179)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEeCcCHH
Confidence 999999999864
No 17
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.84 E-value=2.9e-21 Score=138.66 Aligned_cols=94 Identities=40% Similarity=0.753 Sum_probs=72.9
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
++......+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 21 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 100 (199)
T 2p5s_A 21 KSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRK 100 (199)
T ss_dssp -------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHH
T ss_pred CCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhh
Confidence 44455668999999999999999999999999988888999988888888899999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 101 ~d~iilv~d~~~~~ 114 (199)
T 2p5s_A 101 ADGVLLLYDVTCEK 114 (199)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECCChH
Confidence 99999999999864
No 18
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.84 E-value=8.2e-21 Score=134.66 Aligned_cols=88 Identities=27% Similarity=0.514 Sum_probs=79.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+||++|++.|..+++.+++.+|++|
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 83 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVL 83 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEE
Confidence 4579999999999999999999999999888999998776 456677888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 84 ~v~d~~~~~ 92 (184)
T 1m7b_A 84 ICFDISRPE 92 (184)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999865
No 19
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.84 E-value=1.1e-20 Score=136.24 Aligned_cols=90 Identities=52% Similarity=1.024 Sum_probs=84.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
.+..+||+++|++|||||||+++|.++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~v 84 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGI 84 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEE
Confidence 46789999999999999999999999999988999999888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 85 ilv~d~~~~~ 94 (206)
T 2bcg_Y 85 IIVYDVTDQE 94 (206)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999999864
No 20
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.84 E-value=1.3e-21 Score=138.28 Aligned_cols=90 Identities=54% Similarity=1.051 Sum_probs=59.4
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
.+..+||+++|++|||||||+++|+++.+...+.||++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGI 84 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEE
Confidence 46789999999999999999999999998888889999888878888899999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 85 i~v~d~~~~~ 94 (183)
T 2fu5_C 85 MLVYDITNEK 94 (183)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999999864
No 21
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=134.26 Aligned_cols=92 Identities=55% Similarity=0.999 Sum_probs=85.4
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 34467899999999999999999999999999999999999888888889999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 91 ~~i~v~d~~~~~ 102 (196)
T 3tkl_A 91 GIIVVYDVTDQE 102 (196)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECcCHH
Confidence 999999999864
No 22
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.84 E-value=7.3e-21 Score=135.39 Aligned_cols=92 Identities=46% Similarity=0.835 Sum_probs=82.2
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc-cchhhhhcCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR-AVTRSYYRGA 159 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~ 159 (173)
......+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++. .++..+++.+
T Consensus 15 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~ 94 (189)
T 1z06_A 15 GSRSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNV 94 (189)
T ss_dssp ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTC
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCC
Confidence 334567999999999999999999999999998899999988888888889999999999999999998 8899999999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
|++|+|||+++++
T Consensus 95 d~iilv~D~~~~~ 107 (189)
T 1z06_A 95 HAVVFVYDMTNMA 107 (189)
T ss_dssp CEEEEEEETTCHH
T ss_pred CEEEEEEECcCHH
Confidence 9999999999864
No 23
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.84 E-value=1.4e-20 Score=131.00 Aligned_cols=89 Identities=37% Similarity=0.686 Sum_probs=82.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 45789999999999999999999999998888899998888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 84 ~v~d~~~~~ 92 (170)
T 1r2q_A 84 VVYDITNEE 92 (170)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999864
No 24
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.84 E-value=1.4e-20 Score=132.84 Aligned_cols=88 Identities=36% Similarity=0.536 Sum_probs=81.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i 82 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYI 82 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEE
Confidence 3578999999999999999999999999999999999887 667788999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 83 ~v~d~~~~~ 91 (181)
T 3t5g_A 83 LVYSVTSIK 91 (181)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999865
No 25
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=5.8e-21 Score=133.15 Aligned_cols=89 Identities=39% Similarity=0.761 Sum_probs=76.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1z08_A 4 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAI 83 (170)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEE
Confidence 46799999999999999999999999998888999998888788888899999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 84 ~v~d~~~~~ 92 (170)
T 1z08_A 84 LVYDITDED 92 (170)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999864
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.84 E-value=1e-20 Score=131.50 Aligned_cols=89 Identities=38% Similarity=0.752 Sum_probs=82.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+||+++|++|||||||+++++++.+...+.+|++.++....+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 82 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACV 82 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEE
Confidence 35789999999999999999999999998889999998888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 83 ~v~d~~~~~ 91 (168)
T 1z2a_A 83 LVFSTTDRE 91 (168)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999864
No 27
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=1.1e-20 Score=133.61 Aligned_cols=91 Identities=34% Similarity=0.506 Sum_probs=83.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d 91 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGD 91 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCS
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCC
Confidence 3455689999999999999999999999999999999999877 667788999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++++|||+++++
T Consensus 92 ~~i~v~d~~~~~ 103 (183)
T 3kkq_A 92 GFLIVYSVTDKA 103 (183)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999864
No 28
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.84 E-value=1.3e-20 Score=132.27 Aligned_cols=90 Identities=46% Similarity=0.796 Sum_probs=80.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 83 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCC 83 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEE
Confidence 45679999999999999999999999999888899999888888888899999999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|||+++++
T Consensus 84 i~v~d~~~~~ 93 (177)
T 1wms_A 84 LLTFSVDDSQ 93 (177)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999999864
No 29
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.84 E-value=5.1e-21 Score=137.66 Aligned_cols=94 Identities=63% Similarity=1.120 Sum_probs=73.2
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
....++..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~ 97 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRG 97 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTT
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhcc
Confidence 34456778999999999999999999999999988888999988888888889999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 98 ~d~~i~v~d~~~~~ 111 (200)
T 2o52_A 98 AAGALLVYDITSRE 111 (200)
T ss_dssp CSEEEEEEETTCHH
T ss_pred CCEEEEEEECcCHH
Confidence 99999999999864
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.84 E-value=1.8e-20 Score=130.56 Aligned_cols=89 Identities=43% Similarity=0.745 Sum_probs=83.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+...+.++.+.++....+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 4 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i 83 (170)
T 1z0j_A 4 LRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAI 83 (170)
T ss_dssp EEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEE
Confidence 45799999999999999999999999998889999999888888888999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 84 ~v~d~~~~~ 92 (170)
T 1z0j_A 84 IVYDITKEE 92 (170)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999864
No 31
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.84 E-value=8.6e-21 Score=137.22 Aligned_cols=89 Identities=27% Similarity=0.502 Sum_probs=80.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+||++|+++|..++..+++.+|++
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 103 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAV 103 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEE
Confidence 45679999999999999999999999999988899998776 45667788899999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 104 ilv~D~~~~~ 113 (205)
T 1gwn_A 104 LICFDISRPE 113 (205)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999865
No 32
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.84 E-value=1.5e-20 Score=133.91 Aligned_cols=91 Identities=53% Similarity=0.884 Sum_probs=84.2
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.....+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 90 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQG 90 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999998899999988888888899999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 91 ii~v~d~~~~~ 101 (195)
T 1x3s_A 91 VILVYDVTRRD 101 (195)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999999864
No 33
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=133.93 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=75.6
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+++||++|++++..+ ..+++.+|++
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ 95 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAF 95 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEE
Confidence 34679999999999999999999999999999999999877 455678899999999999999998875 6799999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 96 ilv~d~~~~~s 106 (187)
T 3c5c_A 96 LVVYSVDSRQS 106 (187)
T ss_dssp EEEEETTCHHH
T ss_pred EEEEECCCHHH
Confidence 99999998653
No 34
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.84 E-value=1.8e-20 Score=131.98 Aligned_cols=91 Identities=40% Similarity=0.717 Sum_probs=82.9
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.....+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|+
T Consensus 8 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 87 (181)
T 2efe_B 8 NKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAA 87 (181)
T ss_dssp --CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSE
T ss_pred CCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCE
Confidence 34567999999999999999999999999988888999988888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 88 ~i~v~d~~~~~ 98 (181)
T 2efe_B 88 AIIVFDVTNQA 98 (181)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999999864
No 35
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.84 E-value=3.2e-21 Score=135.53 Aligned_cols=89 Identities=33% Similarity=0.547 Sum_probs=80.6
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECC-eEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHG-EKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
...+||+++|++|||||||+++|+++.+...+.||++.++....+.+++ ..+.+.+||++|++++..++..+++.+|++
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 83 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGV 83 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEE
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEE
Confidence 3569999999999999999999999998877888988777777788876 678999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 84 i~v~d~~~~~ 93 (178)
T 2hxs_A 84 LLVYDITNYQ 93 (178)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999864
No 36
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.1e-20 Score=138.14 Aligned_cols=91 Identities=58% Similarity=1.003 Sum_probs=77.6
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
..+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|+++|..++..+++.+|+
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ 88 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVG 88 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCE
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCE
Confidence 35678999999999999999999999999988888999988888888889999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 89 vilV~D~~~~~ 99 (223)
T 3cpj_B 89 ALIVYDISKSS 99 (223)
T ss_dssp EEEEEC-CCHH
T ss_pred EEEEEeCCCHH
Confidence 99999999864
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.84 E-value=6.4e-21 Score=136.22 Aligned_cols=93 Identities=44% Similarity=0.876 Sum_probs=77.2
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
....+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 34566789999999999999999999999999888889999888888888899999999999999999999999999999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
|++|+|||+++++
T Consensus 100 d~iilV~D~~~~~ 112 (192)
T 2il1_A 100 KGIILVYDITKKE 112 (192)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECcCHH
Confidence 9999999999864
No 38
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=9.3e-21 Score=131.97 Aligned_cols=88 Identities=53% Similarity=1.016 Sum_probs=75.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIIL 81 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEE
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEE
Confidence 46899999999999999999999999988888999988877788888889999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 82 v~d~~~~~ 89 (170)
T 1g16_A 82 VYDITDER 89 (170)
T ss_dssp EEETTCHH
T ss_pred EEECCCHH
Confidence 99999864
No 39
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2.2e-20 Score=131.46 Aligned_cols=92 Identities=46% Similarity=0.884 Sum_probs=75.4
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
+..+..+||+++|++|||||||+++|+++.+. ..+.+|++.++....+.+++..+.+.+||++|++++..++..+++.+
T Consensus 5 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~ 84 (180)
T 2g6b_A 5 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDA 84 (180)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGC
T ss_pred ccCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCC
Confidence 44567899999999999999999999999885 46788999888777778899999999999999999999999999999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
|++|+|||+++++
T Consensus 85 d~ii~v~d~~~~~ 97 (180)
T 2g6b_A 85 HALLLLYDVTNKA 97 (180)
T ss_dssp SEEEEEEETTCHH
T ss_pred CEEEEEEECCCHH
Confidence 9999999999864
No 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=2e-20 Score=133.57 Aligned_cols=89 Identities=26% Similarity=0.440 Sum_probs=80.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~ 93 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVF 93 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEE
Confidence 45679999999999999999999999999988999998776 45667788889999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 94 i~v~d~~~~~ 103 (194)
T 2atx_A 94 LICFSVVNPA 103 (194)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999875
No 41
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=134.50 Aligned_cols=91 Identities=25% Similarity=0.389 Sum_probs=72.0
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+||++|+++|..++..+++++|
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTD 93 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCc
Confidence 3445679999999999999999999999999888999998766 456678899999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 94 ~~i~v~d~~~~~ 105 (201)
T 2q3h_A 94 IFLLCFSVVSPS 105 (201)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999865
No 42
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.83 E-value=9.4e-21 Score=137.68 Aligned_cols=99 Identities=27% Similarity=0.476 Sum_probs=59.1
Q ss_pred hccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch
Q psy13826 73 SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT 152 (173)
Q Consensus 73 ~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~ 152 (173)
+.|...........+||+++|++|||||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||+|++++..++
T Consensus 21 ~~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 99 (214)
T 2j1l_A 21 QSMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLR 99 (214)
T ss_dssp -----------CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE-EEEEEETTEEEEEEEEEC----------
T ss_pred cccccccCCCCcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 334333333344579999999999999999999999999888888887665 4566788999999999999999999999
Q ss_pred hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~~~ 172 (173)
+.+++.+|++|+|||+++++
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~ 119 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPN 119 (214)
T ss_dssp -----CEEEEEEEEETTCHH
T ss_pred HHHhccCCEEEEEEECcCHH
Confidence 99999999999999999864
No 43
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.83 E-value=2.1e-20 Score=135.26 Aligned_cols=88 Identities=33% Similarity=0.554 Sum_probs=78.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.||++..+ ...+.+++..+.+.+||++|+++|..+++.+++.+|++|
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 85 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFV 85 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEE
Confidence 3569999999999999999999999999888999998766 445677888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 86 lv~d~~~~~ 94 (212)
T 2j0v_A 86 LAFSLISKA 94 (212)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999865
No 44
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.83 E-value=3.5e-20 Score=130.31 Aligned_cols=89 Identities=37% Similarity=0.561 Sum_probs=81.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~ 84 (181)
T 2fn4_A 6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGF 84 (181)
T ss_dssp SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEE
Confidence 345789999999999999999999999999999999998775 6677888889999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|||+++++
T Consensus 85 i~v~d~~~~~ 94 (181)
T 2fn4_A 85 LLVFAINDRQ 94 (181)
T ss_dssp EEEEETTCHH
T ss_pred EEEEeCCCHH
Confidence 9999999864
No 45
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.83 E-value=2.8e-20 Score=132.11 Aligned_cols=92 Identities=39% Similarity=0.804 Sum_probs=82.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeE-EEEEEECCe---------EEEEEEEeCCCcccccc
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG-TRIIEVHGE---------KIKLQIWDTAGQERFRA 150 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~---------~~~l~i~D~~g~~~~~~ 150 (173)
+..+..+||+++|++|||||||+++|+++.+...+.+|++.++. ...+.+++. .+.+.+||++|++++..
T Consensus 6 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 85 (195)
T 3bc1_A 6 GDYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRS 85 (195)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHH
T ss_pred cccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHH
Confidence 34667899999999999999999999999998888999998876 556666665 78999999999999999
Q ss_pred chhhhhcCCCEEEEEEeCCCCC
Q psy13826 151 VTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 151 ~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
++..+++.+|++|+|||+++++
T Consensus 86 ~~~~~~~~~d~~i~v~d~~~~~ 107 (195)
T 3bc1_A 86 LTTAFFRDAMGFLLLFDLTNEQ 107 (195)
T ss_dssp HHHHTTTTCSEEEEEEETTCHH
T ss_pred HHHHHHcCCCEEEEEEECCCHH
Confidence 9999999999999999999864
No 46
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.83 E-value=3.3e-20 Score=134.05 Aligned_cols=92 Identities=53% Similarity=0.999 Sum_probs=81.7
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
...+..+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 15 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 94 (213)
T 3cph_A 15 KSYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAM 94 (213)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCS
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCC
Confidence 34566799999999999999999999999998888999998888888888999999999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 95 ~ii~v~d~~~~~ 106 (213)
T 3cph_A 95 GIILVYDVTDER 106 (213)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999864
No 47
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.82 E-value=3.2e-20 Score=133.58 Aligned_cols=90 Identities=41% Similarity=0.742 Sum_probs=82.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.++++.++....+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 84 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCC 84 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEE
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEE
Confidence 34679999999999999999999999999988999999888888888888899999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 85 i~v~d~~~~~ 94 (207)
T 1vg8_A 85 VLVFDVTAPN 94 (207)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999864
No 48
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=1.7e-20 Score=136.41 Aligned_cols=112 Identities=21% Similarity=0.311 Sum_probs=73.2
Q ss_pred cccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEE
Q psy13826 61 PITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQ 138 (173)
Q Consensus 61 ~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~ 138 (173)
+..+.+.-|...+..+..........+||+++|++|||||||+++|++.. +...+. +++.++....+.+++..+.+.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d~~~~~i~~~~~~~~l~ 90 (211)
T 2g3y_A 12 DLGTENLYFQSMSTDSVISSESGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGEDTYERTLMVDGESATII 90 (211)
T ss_dssp -----------------------CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTTEEEEEEEETTEEEEEE
T ss_pred ccccCCccccccccCCCcccccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-ccceeeEEEEEEECCeeeEEE
Confidence 34455555555555555555566778999999999999999999999644 344444 566666677778899999999
Q ss_pred EEeCCCccc-cccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826 139 IWDTAGQER-FRAVTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 139 i~D~~g~~~-~~~~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
+|||+|++. +..+.+.+++.++++|+|||++|++|
T Consensus 91 ~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~s 126 (211)
T 2g3y_A 91 LLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRAS 126 (211)
T ss_dssp EECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHH
T ss_pred EeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHH
Confidence 999999887 55677788999999999999998753
No 49
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=2.3e-21 Score=138.30 Aligned_cols=94 Identities=40% Similarity=0.849 Sum_probs=86.0
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
.+...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.
T Consensus 16 ~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 95 (191)
T 3dz8_A 16 FQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRG 95 (191)
T ss_dssp ETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTT
T ss_pred cccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHcc
Confidence 34556788999999999999999999999999988888999988888888888888999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 96 ~d~~i~v~d~~~~~ 109 (191)
T 3dz8_A 96 AMGFILMYDITNEE 109 (191)
T ss_dssp CCEEEEEEETTCHH
T ss_pred CCEEEEEEECcCHH
Confidence 99999999999864
No 50
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.82 E-value=6e-20 Score=129.71 Aligned_cols=87 Identities=28% Similarity=0.504 Sum_probs=79.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 82 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLI 82 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEE
Confidence 468999999999999999999999999888889988766 4556788999999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 83 v~d~~~~~ 90 (186)
T 1mh1_A 83 CFSLVSPA 90 (186)
T ss_dssp EEETTCHH
T ss_pred EEECCChh
Confidence 99999864
No 51
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.82 E-value=4.3e-20 Score=132.02 Aligned_cols=89 Identities=37% Similarity=0.714 Sum_probs=79.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeE-----------------------------
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK----------------------------- 134 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~----------------------------- 134 (173)
+..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++..
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 457999999999999999999999999998899999988877777777655
Q ss_pred --------EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 135 --------IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 135 --------~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+.+.+||++|++.+..++..+++.+|++|+|||+++++
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~ 130 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSN 130 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHH
T ss_pred cccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHH
Confidence 89999999999999999999999999999999999864
No 52
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=1.6e-20 Score=136.36 Aligned_cols=94 Identities=39% Similarity=0.823 Sum_probs=81.9
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe----------EEEEEEEeCCCcccc
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE----------KIKLQIWDTAGQERF 148 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~----------~~~l~i~D~~g~~~~ 148 (173)
....++..+||+++|++|||||||+++|+++.+...+.+|++.++....+.+++. .+.+.+||++|++++
T Consensus 18 ~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~ 97 (217)
T 2f7s_A 18 GSGDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERF 97 (217)
T ss_dssp ---CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHH
T ss_pred cCCCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhH
Confidence 3345677899999999999999999999999998888889998887777777766 789999999999999
Q ss_pred ccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
..++..+++.+|++|+|||+++++
T Consensus 98 ~~~~~~~~~~~d~iilV~D~~~~~ 121 (217)
T 2f7s_A 98 RSLTTAFFRDAMGFLLMFDLTSQQ 121 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEETTCHH
T ss_pred HhHHHHHhcCCCEEEEEEECcCHH
Confidence 999999999999999999999864
No 53
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.82 E-value=3.3e-20 Score=128.84 Aligned_cols=86 Identities=31% Similarity=0.521 Sum_probs=78.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.+|.+..+. ..+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 589999999999999999999999998889999987763 5567788899999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 82 ~d~~~~~ 88 (167)
T 1c1y_A 82 YSITAQS 88 (167)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999864
No 54
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.82 E-value=1e-20 Score=135.72 Aligned_cols=93 Identities=23% Similarity=0.242 Sum_probs=75.0
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGA 159 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~ 159 (173)
......+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+||++|++.+.. +++.+++.+
T Consensus 18 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~ 97 (195)
T 3cbq_A 18 GQKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTG 97 (195)
T ss_dssp ----CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHC
T ss_pred CCCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccC
Confidence 3455679999999999999999999986555444455666666666778899999999999999998765 788899999
Q ss_pred CEEEEEEeCCCCCC
Q psy13826 160 AGALMVIDVSHVKE 173 (173)
Q Consensus 160 ~~~ilv~d~t~~~S 173 (173)
|++|+|||+++++|
T Consensus 98 d~~ilv~d~~~~~s 111 (195)
T 3cbq_A 98 DAFLIVFSVTDRRS 111 (195)
T ss_dssp SEEEEEEETTCHHH
T ss_pred CEEEEEEECCCHHH
Confidence 99999999998753
No 55
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.82 E-value=1.1e-20 Score=137.64 Aligned_cols=94 Identities=31% Similarity=0.540 Sum_probs=85.7
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
.+......+||+++|++|||||||+++|+.+.+...+.++.+.++....+.+++..+.+.+|||+|++.+..++..+++.
T Consensus 8 ~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 87 (221)
T 3gj0_A 8 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQ 87 (221)
T ss_dssp STTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTT
T ss_pred cCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhc
Confidence 44455678999999999999999999999888888888999988888888899999999999999999999999999999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++|+|||+++++
T Consensus 88 ~~~~i~v~d~~~~~ 101 (221)
T 3gj0_A 88 AQCAIIMFDVTSRV 101 (221)
T ss_dssp CCEEEEEEETTCHH
T ss_pred CCEEEEEEECCCHH
Confidence 99999999999864
No 56
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.82 E-value=4e-20 Score=148.52 Aligned_cols=85 Identities=18% Similarity=0.255 Sum_probs=61.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------ccccccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAV 151 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~ 151 (173)
...+||+++|++|||||||++++++.+. ...+. +...+.....+..++. .+.+|||+| +++|..+
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~-gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~ 269 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVA-GTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVL 269 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEECC-------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccCCCC-CeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHH
Confidence 4578999999999999999999997652 22333 2233332344556665 688999999 6777766
Q ss_pred hhh-hhcCCCEEEEEEeCCCC
Q psy13826 152 TRS-YYRGAAGALMVIDVSHV 171 (173)
Q Consensus 152 ~~~-~~~~~~~~ilv~d~t~~ 171 (173)
+.. +++.+|++|+|+|+++.
T Consensus 270 ~~~~~~~~ad~~llviD~~~~ 290 (456)
T 4dcu_A 270 RALKAIDRSEVVAVVLDGEEG 290 (456)
T ss_dssp HHHHHHHHCSEEEEEEETTTC
T ss_pred HHHHHHhhCCEEEEEEeCCCC
Confidence 654 78999999999999874
No 57
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=133.02 Aligned_cols=89 Identities=28% Similarity=0.488 Sum_probs=77.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 99 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGY 99 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEE
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEE
Confidence 34689999999999999999999999999999999998877 56666778889999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
|+|||+++++
T Consensus 100 i~v~d~~~~~ 109 (201)
T 3oes_A 100 VLVYSVTSLH 109 (201)
T ss_dssp EEEEETTCHH
T ss_pred EEEEeCCCHH
Confidence 9999999864
No 58
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.82 E-value=1e-19 Score=130.85 Aligned_cols=88 Identities=31% Similarity=0.505 Sum_probs=80.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+...+.+|++.++. ..+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 101 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVIL 101 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEE
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEE
Confidence 46789999999999999999999999999889999988774 34678888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 102 ~v~d~~~~~ 110 (201)
T 2gco_A 102 MCFSIDSPD 110 (201)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999864
No 59
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.82 E-value=7e-20 Score=130.18 Aligned_cols=86 Identities=22% Similarity=0.373 Sum_probs=74.5
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
......+||+++|++|||||||+++|+++.+...+.+|.+ .+ ...+.+++..+.+.+|||+|++++. +++.+|
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~ 87 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVD 87 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCS
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCC
Confidence 3455689999999999999999999999999988888844 44 4677889999999999999998876 788999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++++|||+++++|
T Consensus 88 ~~i~v~d~~~~~s 100 (184)
T 3ihw_A 88 AVVFVFSLEDEIS 100 (184)
T ss_dssp EEEEEEETTCHHH
T ss_pred EEEEEEECcCHHH
Confidence 9999999998753
No 60
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.81 E-value=4.1e-20 Score=132.10 Aligned_cols=92 Identities=16% Similarity=0.325 Sum_probs=72.8
Q ss_pred CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhh
Q psy13826 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYY 156 (173)
Q Consensus 78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~ 156 (173)
.........+||+++|++|||||||+++|+++.+.. .+.+|++.... . ++...+.+.+|||+|++++..++..++
T Consensus 9 ~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~--~--~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 84 (199)
T 4bas_A 9 HHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE--T--FEKGRVAFTVFDMGGAKKFRGLWETYY 84 (199)
T ss_dssp -------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE--E--EEETTEEEEEEEECCSGGGGGGGGGGC
T ss_pred ccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE--E--EEeCCEEEEEEECCCCHhHHHHHHHHH
Confidence 345566778999999999999999999999999988 88999985443 2 334567899999999999999999999
Q ss_pred cCCCEEEEEEeCCCCCC
Q psy13826 157 RGAAGALMVIDVSHVKE 173 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~S 173 (173)
+.+|++|+|||+++++|
T Consensus 85 ~~~d~ii~v~D~~~~~s 101 (199)
T 4bas_A 85 DNIDAVIFVVDSSDHLR 101 (199)
T ss_dssp TTCSEEEEEEETTCGGG
T ss_pred hcCCEEEEEEECCcHHH
Confidence 99999999999999764
No 61
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.81 E-value=5.5e-21 Score=137.45 Aligned_cols=89 Identities=31% Similarity=0.536 Sum_probs=51.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEECCe--EEEEEEEeCCCccccccchhhhhcCC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEVHGE--KIKLQIWDTAGQERFRAVTRSYYRGA 159 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~--~~~l~i~D~~g~~~~~~~~~~~~~~~ 159 (173)
...+||+++|++|||||||+++|+++ .+...+.+|++.++....+.+++. .+.+.+||++|++.+..++..+++.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 97 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGV 97 (208)
T ss_dssp EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhC
Confidence 46799999999999999999999999 888888999987777777888877 89999999999999999999999999
Q ss_pred CEEEEEEeCCCCC
Q psy13826 160 AGALMVIDVSHVK 172 (173)
Q Consensus 160 ~~~ilv~d~t~~~ 172 (173)
|++|+|||+++++
T Consensus 98 d~~i~v~d~~~~~ 110 (208)
T 2yc2_C 98 YYAILVFDVSSME 110 (208)
T ss_dssp CEEEEEEETTCHH
T ss_pred cEEEEEEECCCHH
Confidence 9999999999864
No 62
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.81 E-value=4.5e-20 Score=129.80 Aligned_cols=82 Identities=20% Similarity=0.319 Sum_probs=72.5
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|+++.+.. +.||++..+ ...+.+++..+.+++||++|+++ ..+++++|++|+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~il 78 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIF 78 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEE
Confidence 46899999999999999999999999876 788888665 56777899999999999999986 568899999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 79 v~D~~~~~s 87 (178)
T 2iwr_A 79 VFSLEDENS 87 (178)
T ss_dssp EEETTCHHH
T ss_pred EEECcCHHH
Confidence 999998753
No 63
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.81 E-value=2.4e-20 Score=131.27 Aligned_cols=90 Identities=40% Similarity=0.752 Sum_probs=68.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
....+||+++|++|||||||+++++++.+...+.++++.++....+.++ +..+.+.+||++|++.+..++..+++.+|+
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ 84 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADC 84 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCE
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCE
Confidence 3457999999999999999999999999988899999888877777776 667899999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+|+|||+++++
T Consensus 85 ~i~v~d~~~~~ 95 (182)
T 1ky3_A 85 CVLVYDVTNAS 95 (182)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCChH
Confidence 99999999864
No 64
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.81 E-value=1.1e-19 Score=131.06 Aligned_cols=88 Identities=26% Similarity=0.471 Sum_probs=77.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i 106 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 106 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEE
Confidence 4579999999999999999999999999988999887655 556678888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 107 ~v~d~~~~~ 115 (204)
T 4gzl_A 107 ICFSLVSPA 115 (204)
T ss_dssp EEEETTCHH
T ss_pred EEEECCCHH
Confidence 999999865
No 65
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.81 E-value=1.1e-19 Score=125.96 Aligned_cols=86 Identities=31% Similarity=0.506 Sum_probs=78.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.++++++|
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 58999999999999999999999999888888888655 56677889999999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 82 ~d~~~~~ 88 (167)
T 1kao_A 82 YSLVNQQ 88 (167)
T ss_dssp EETTCHH
T ss_pred EeCCCHH
Confidence 9999864
No 66
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.81 E-value=1.1e-19 Score=126.12 Aligned_cols=86 Identities=34% Similarity=0.627 Sum_probs=75.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 58999999999999999999999999888888888766 34567888899999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 83 ~d~~~~~ 89 (168)
T 1u8z_A 83 FSITEME 89 (168)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999864
No 67
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.81 E-value=1.2e-19 Score=130.33 Aligned_cols=90 Identities=32% Similarity=0.580 Sum_probs=80.5
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
.....+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+
T Consensus 10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 88 (206)
T 2bov_A 10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEG 88 (206)
T ss_dssp -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSE
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCE
Confidence 344579999999999999999999999999888999988766 4566788889999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+++|||+++++
T Consensus 89 ~i~v~d~~~~~ 99 (206)
T 2bov_A 89 FLCVFSITEME 99 (206)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECCCHH
Confidence 99999999864
No 68
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=1.6e-19 Score=130.45 Aligned_cols=87 Identities=31% Similarity=0.512 Sum_probs=72.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|+++.+...+.+|.+..+.. .+.+++..+.+.+|||+|++++..++..+++.+|++|+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEE
Confidence 56899999999999999999999999988888998877644 46788889999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 103 v~d~~~~~ 110 (207)
T 2fv8_A 103 CFSVDSPD 110 (207)
T ss_dssp EEETTCHH
T ss_pred EEECCCHH
Confidence 99999864
No 69
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=2e-20 Score=133.36 Aligned_cols=93 Identities=24% Similarity=0.263 Sum_probs=75.8
Q ss_pred CCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC-----------CCCceeeeeEEEEE-EECCeEEEEEEEeCCCc
Q psy13826 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD-----------CPHTIGVEFGTRII-EVHGEKIKLQIWDTAGQ 145 (173)
Q Consensus 78 ~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~-----------~~~t~~~~~~~~~~-~~~~~~~~l~i~D~~g~ 145 (173)
.........+||+++|++|||||||++ ++.+.+... +.+|++.++....+ .+++..+.+++|||+|+
T Consensus 6 ~~~~~~~~~~ki~vvG~~~~GKssL~~-~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~ 84 (198)
T 3t1o_A 6 INFANREINFKIVYYGPGLSGKTTNLK-WIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQ 84 (198)
T ss_dssp EETTTTEEEEEEEEECSTTSSHHHHHH-HHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSC
T ss_pred cchhccccccEEEEECCCCCCHHHHHH-HHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCCh
Confidence 344556778999999999999999995 455556555 34577766655544 56788899999999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
++|..+++.+++.+|++|+|||++++
T Consensus 85 ~~~~~~~~~~~~~~d~~i~v~D~~~~ 110 (198)
T 3t1o_A 85 VFYNASRKLILRGVDGIVFVADSAPN 110 (198)
T ss_dssp CSCSHHHHHHTTTCCEEEEEEECCGG
T ss_pred HHHHHHHHHHHhcCCEEEEEEECCcc
Confidence 99999999999999999999999843
No 70
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.81 E-value=1.9e-19 Score=127.46 Aligned_cols=87 Identities=33% Similarity=0.562 Sum_probs=76.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+..+++.+++.+|++++
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE-EEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE-EEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 468999999999999999999999999888888886554 4566789999999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 82 v~d~~~~~ 89 (189)
T 4dsu_A 82 VFAINNTK 89 (189)
T ss_dssp EEETTCHH
T ss_pred EEECCCHH
Confidence 99999864
No 71
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.80 E-value=1.7e-20 Score=132.18 Aligned_cols=87 Identities=32% Similarity=0.562 Sum_probs=62.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+...+.+|++..+. ..+.+++..+.+++||++|++++..++..+++.+|++++
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 4689999999999999999999999998888888886653 234567778889999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 86 v~d~~~~~ 93 (182)
T 3bwd_D 86 AFSLISKA 93 (182)
T ss_dssp EEETTCHH
T ss_pred EEECCCHH
Confidence 99999865
No 72
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.80 E-value=1.7e-19 Score=127.33 Aligned_cols=89 Identities=33% Similarity=0.583 Sum_probs=79.2
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 93 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGF 93 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEE
Confidence 34579999999999999999999999999888888888766 44567888889999999999999999999999999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|||+++++
T Consensus 94 i~v~d~~~~~ 103 (187)
T 2a9k_A 94 LCVFSITEME 103 (187)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECcCHH
Confidence 9999999864
No 73
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.80 E-value=3e-19 Score=128.16 Aligned_cols=89 Identities=57% Similarity=0.970 Sum_probs=79.6
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
+..+|++++|++|||||||++++++..+...+.||++.++....+.+++..+.+.+||++|++++..++..+++.+++++
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 82 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGAL 82 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEE
Confidence 45799999999999999999999999998888899988888888889999999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||++++.
T Consensus 83 ~v~d~~~~~ 91 (199)
T 2f9l_A 83 LVYDIAKHL 91 (199)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999998753
No 74
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=9.4e-21 Score=136.02 Aligned_cols=93 Identities=55% Similarity=0.989 Sum_probs=82.1
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
...+..+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++..+.+.+||++|++.+..++..+++.+|
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 34567899999999999999999999999988888888888888888889999999999999999999999999999999
Q ss_pred EEEEEEeCCCCCC
Q psy13826 161 GALMVIDVSHVKE 173 (173)
Q Consensus 161 ~~ilv~d~t~~~S 173 (173)
++|+|||+++++|
T Consensus 108 ~~i~v~d~~~~~s 120 (199)
T 3l0i_B 108 GIIVVYDVTDQES 120 (199)
T ss_dssp EEEECC-CCCSHH
T ss_pred EEEEEEECCCHHH
Confidence 9999999998753
No 75
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.80 E-value=1.1e-19 Score=126.61 Aligned_cols=88 Identities=23% Similarity=0.288 Sum_probs=63.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc-chhhhhcCCCEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA-VTRSYYRGAAGALM 164 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~-~~~~~~~~~~~~il 164 (173)
.+||+++|++|||||||+++|++..+...+.++.+.+.....+.+++..+.+.+||++|++++.. +++.+++.+|++++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~ 81 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLI 81 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEE
Confidence 58999999999999999999998877766666666677777888899999999999999998875 77888999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 82 v~d~~~~~s 90 (169)
T 3q85_A 82 VFSVTDRRS 90 (169)
T ss_dssp EEETTCHHH
T ss_pred EEECCChHH
Confidence 999998653
No 76
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.2e-19 Score=125.11 Aligned_cols=87 Identities=24% Similarity=0.376 Sum_probs=77.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+...+.++.+..+. ..+..++..+.+.+||++|++++..++..+++.+|++++
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 3589999999999999999999999988888888887663 455678888999999999999999999999999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 81 v~d~~~~~ 88 (172)
T 2erx_A 81 VYSITSRQ 88 (172)
T ss_dssp EEETTCHH
T ss_pred EEECcCHH
Confidence 99999864
No 77
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.80 E-value=1.6e-19 Score=128.42 Aligned_cols=87 Identities=22% Similarity=0.467 Sum_probs=75.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGA 162 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ 162 (173)
....+||+++|++|||||||+++|+++.+...+.+|++.++.. + +...+.+.+||++|++++..++..+++.+|++
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 94 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK--I--TKGNVTIKLWDIGGQPRFRSMWERYCRGVSAI 94 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE--E--EETTEEEEEEEECCSHHHHTTHHHHHTTCSEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE--E--EeCCEEEEEEECCCCHhHHHHHHHHHccCCEE
Confidence 3457999999999999999999999999988888999877643 2 23457889999999999999999999999999
Q ss_pred EEEEeCCCCCC
Q psy13826 163 LMVIDVSHVKE 173 (173)
Q Consensus 163 ilv~d~t~~~S 173 (173)
|+|||+++++|
T Consensus 95 i~v~D~~~~~s 105 (188)
T 1zd9_A 95 VYMVDAADQEK 105 (188)
T ss_dssp EEEEETTCGGG
T ss_pred EEEEECCCHHH
Confidence 99999998764
No 78
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=2.3e-19 Score=128.16 Aligned_cols=88 Identities=27% Similarity=0.405 Sum_probs=78.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.++++..+. ..+..++..+.+.+|||+|++++..++..+++.+|+++
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 84 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFI 84 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEE
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEE
Confidence 34689999999999999999999999998888888886653 45667888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 85 ~v~d~~~~~ 93 (199)
T 2gf0_A 85 LVFSVTSKQ 93 (199)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999864
No 79
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.80 E-value=5.3e-19 Score=126.30 Aligned_cols=91 Identities=57% Similarity=0.974 Sum_probs=84.0
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAG 161 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~ 161 (173)
..+..+|++++|++|||||||++++++..+...+.+|++.++....+.+++..+.+++||++|++++..++..+++.+++
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~ 104 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVG 104 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCE
Confidence 45678999999999999999999999999998999999999888888999999999999999999999999999999999
Q ss_pred EEEEEeCCCCC
Q psy13826 162 ALMVIDVSHVK 172 (173)
Q Consensus 162 ~ilv~d~t~~~ 172 (173)
+++|||++++.
T Consensus 105 ~i~v~d~~~~~ 115 (191)
T 1oix_A 105 ALLVYDIAKHL 115 (191)
T ss_dssp EEEEEETTCHH
T ss_pred EEEEEECcCHH
Confidence 99999998753
No 80
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=3.1e-19 Score=127.67 Aligned_cols=86 Identities=28% Similarity=0.430 Sum_probs=77.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++. ..++..+++.+|++++
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iil 104 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVL 104 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEE
Confidence 468999999999999999999999999988999998766 45567888999999999999988 7788899999999999
Q ss_pred EEeCCCCC
Q psy13826 165 VIDVSHVK 172 (173)
Q Consensus 165 v~d~t~~~ 172 (173)
|||+++++
T Consensus 105 v~D~~~~~ 112 (196)
T 2atv_A 105 VYDITDRG 112 (196)
T ss_dssp EEETTCHH
T ss_pred EEECcCHH
Confidence 99999864
No 81
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=125.22 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=67.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccchhhhhcCCCEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVTRSYYRGAAGA 162 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~~~~~~~~~~~~ 162 (173)
..+||+++|++|||||||+++|+++.+...+ ++.+.++....+.+++..+.+.+||++|++. +..+...+++.+|++
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~ 81 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAY 81 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEE
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-CccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEE
Confidence 4689999999999999999999998876544 3567677677788899999999999999988 567778899999999
Q ss_pred EEEEeCCCCC
Q psy13826 163 LMVIDVSHVK 172 (173)
Q Consensus 163 ilv~d~t~~~ 172 (173)
++|||+++++
T Consensus 82 i~v~d~~~~~ 91 (175)
T 2nzj_A 82 VIVYSIADRG 91 (175)
T ss_dssp EEEEETTCHH
T ss_pred EEEEECCCHH
Confidence 9999999865
No 82
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.79 E-value=7.7e-19 Score=124.78 Aligned_cols=88 Identities=33% Similarity=0.545 Sum_probs=68.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|+++
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 97 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL 97 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEE
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEE
Confidence 4579999999999999999999999999888888887665 456678888999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 98 ~v~d~~~~~ 106 (190)
T 3con_A 98 CVFAINNSK 106 (190)
T ss_dssp EEEETTCHH
T ss_pred EEEECcCHH
Confidence 999999864
No 83
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=3.6e-19 Score=125.83 Aligned_cols=90 Identities=27% Similarity=0.398 Sum_probs=72.3
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG 158 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~ 158 (173)
........+||+++|++|||||||+++|+++++ ..+.+|.+.... .+.+++ +.+.+||++|++++..++..+++.
T Consensus 14 ~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~ 88 (181)
T 2h17_A 14 LVPRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTN 88 (181)
T ss_dssp -------CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTT
T ss_pred ccCCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhcc
Confidence 344455689999999999999999999999988 566778875543 344544 788999999999999999999999
Q ss_pred CCEEEEEEeCCCCCC
Q psy13826 159 AAGALMVIDVSHVKE 173 (173)
Q Consensus 159 ~~~~ilv~d~t~~~S 173 (173)
+|++|+|||+++++|
T Consensus 89 ~d~ii~v~D~~~~~s 103 (181)
T 2h17_A 89 TEFVIVVVDSTDRER 103 (181)
T ss_dssp CCEEEEEEETTCTTT
T ss_pred CCEEEEEEECCCHHH
Confidence 999999999999865
No 84
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.78 E-value=3e-19 Score=124.02 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=54.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||++++++..+. ...++.+.++ ...+.+++..+.+.+||++|++.+..+++.+++.+|++++|
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-PEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-CCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 589999999999999999999876654 3455666665 45667899999999999999999999999999999999999
Q ss_pred EeCCCCCC
Q psy13826 166 IDVSHVKE 173 (173)
Q Consensus 166 ~d~t~~~S 173 (173)
||+++++|
T Consensus 80 ~d~~~~~s 87 (166)
T 3q72_A 80 YSVTDKGS 87 (166)
T ss_dssp EETTCHHH
T ss_pred EECCCHHH
Confidence 99998753
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.78 E-value=1.1e-18 Score=121.52 Aligned_cols=85 Identities=24% Similarity=0.472 Sum_probs=72.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+. .+.||++... ..+.++ .+.+.+||++|++.+..++..+++.+|+++
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 79 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVGEVV-TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVI 79 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHSSCC-CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCCC-CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEE
Confidence 34689999999999999999999999875 4677877543 344454 567899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 80 ~v~d~~~~~s 89 (171)
T 1upt_A 80 YVVDSCDRDR 89 (171)
T ss_dssp EEEETTCCTT
T ss_pred EEEECCCHHH
Confidence 9999999865
No 86
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.78 E-value=8.5e-19 Score=121.17 Aligned_cols=86 Identities=35% Similarity=0.620 Sum_probs=77.5
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEE
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 165 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv 165 (173)
.+||+++|++|||||||+++++++.+...+.++.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++++|
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 47999999999999999999999999888888887665 45667888899999999999999999999999999999999
Q ss_pred EeCCCCC
Q psy13826 166 IDVSHVK 172 (173)
Q Consensus 166 ~d~t~~~ 172 (173)
||+++++
T Consensus 82 ~d~~~~~ 88 (166)
T 2ce2_X 82 FAINNTK 88 (166)
T ss_dssp EETTCHH
T ss_pred EECCCHH
Confidence 9999864
No 87
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=5.7e-19 Score=125.34 Aligned_cols=84 Identities=27% Similarity=0.488 Sum_probs=68.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++++. .+.||++... ..+.+++ +.+.+||++|++++..++..+++.+|++|+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 4689999999999999999999998887 6677887543 3444544 788999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 90 v~d~~~~~s 98 (187)
T 1zj6_A 90 VVDSTDRER 98 (187)
T ss_dssp EEETTCTTT
T ss_pred EEeCCCHHH
Confidence 999999865
No 88
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=3.2e-19 Score=123.64 Aligned_cols=82 Identities=23% Similarity=0.557 Sum_probs=69.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEE
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVI 166 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~ 166 (173)
+||+++|++|||||||+++++++.+.. +.||++... ..+.. ..+.+.+||++|++++..++..+++.+|++++||
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~--~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV--ETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE--EEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE--EEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 589999999999999999999988764 577887433 33333 4578999999999999999999999999999999
Q ss_pred eCCCCCC
Q psy13826 167 DVSHVKE 173 (173)
Q Consensus 167 d~t~~~S 173 (173)
|+++++|
T Consensus 76 d~~~~~s 82 (164)
T 1r8s_A 76 DSNDRER 82 (164)
T ss_dssp ETTCGGG
T ss_pred ECCCHHH
Confidence 9999764
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.78 E-value=1.6e-18 Score=123.59 Aligned_cols=84 Identities=19% Similarity=0.351 Sum_probs=71.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++++++.+. .+.||++.. ...+.+++ +.+.+|||+|++.+..+++.+++.+|++++
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~--~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 96 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPT--SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVF 96 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCE--EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCC--eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEE
Confidence 4579999999999999999999998875 567788764 34555665 789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 97 v~d~~~~~s 105 (190)
T 1m2o_B 97 LVDAADPER 105 (190)
T ss_dssp EEETTCGGG
T ss_pred EEECCChHH
Confidence 999999864
No 90
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=2e-18 Score=138.09 Aligned_cols=85 Identities=25% Similarity=0.262 Sum_probs=56.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-----------
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV----------- 151 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~----------- 151 (173)
..+|++++|++|||||||++++++... ...++.+. .+.....+.+++. .+.+|||+|+.++...
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT-~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~ 255 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTT-RDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNY 255 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC-------CCEEEEETTE--EEEESSCSCC-----------CCSCCH
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCc-CCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHH
Confidence 458999999999999999999998864 23333322 2222345566776 4689999997543221
Q ss_pred h-hhhhcCCCEEEEEEeCCCCC
Q psy13826 152 T-RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 152 ~-~~~~~~~~~~ilv~d~t~~~ 172 (173)
. ..+++.+|++++|+|+++..
T Consensus 256 ~~~~~i~~ad~vllv~d~~~~~ 277 (439)
T 1mky_A 256 RVVDSIEKADVVVIVLDATQGI 277 (439)
T ss_dssp HHHHHHHHCSEEEEEEETTTCC
T ss_pred HHHHHHhhCCEEEEEEeCCCCC
Confidence 1 24678899999999998753
No 91
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.78 E-value=4.8e-19 Score=127.20 Aligned_cols=84 Identities=19% Similarity=0.350 Sum_probs=64.5
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||++++.++.+. .+.||++.+. ..+.+++ +.+.+|||+|+++++.+++.+++.+|++++
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 98 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVF 98 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEE
Confidence 3579999999999999999999998874 5677887654 3455666 789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 99 v~D~~~~~s 107 (198)
T 1f6b_A 99 LVDCADHER 107 (198)
T ss_dssp EEETTCGGG
T ss_pred EEECCCHHH
Confidence 999999764
No 92
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.78 E-value=7.5e-19 Score=124.44 Aligned_cols=85 Identities=25% Similarity=0.551 Sum_probs=72.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||++++++++ ...+.||++... ..+.++ .+.+.+|||+|++++..++..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 90 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLI 90 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEE
Confidence 456899999999999999999999988 677888888544 344454 467899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 91 ~v~d~~~~~s 100 (186)
T 1ksh_A 91 WVVDSADRQR 100 (186)
T ss_dssp EEEETTCGGG
T ss_pred EEEECcCHHH
Confidence 9999999764
No 93
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.77 E-value=1.7e-19 Score=128.00 Aligned_cols=86 Identities=28% Similarity=0.466 Sum_probs=64.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhC--CCCCCCCCceeeeeEEEEEEE---CCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDCPHTIGVEFGTRIIEV---HGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~~~t~~~~~~~~~~~~---~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
.+||+++|++|||||||+++|++. .+...+.+|++.++....+.+ ++..+.+.+||++|+++|..+++.+++.++
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~ 81 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRA 81 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCc
Confidence 479999999999999999999985 566678889988876655443 346778999999999999999999999999
Q ss_pred EEEEEEeCCCC
Q psy13826 161 GALMVIDVSHV 171 (173)
Q Consensus 161 ~~ilv~d~t~~ 171 (173)
++++|||++++
T Consensus 82 ~~i~v~d~~~~ 92 (184)
T 2zej_A 82 LYLAVYDLSKG 92 (184)
T ss_dssp EEEEEEEGGGC
T ss_pred EEEEEEeCCcc
Confidence 99999999986
No 94
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=5.9e-19 Score=125.54 Aligned_cols=87 Identities=21% Similarity=0.360 Sum_probs=72.2
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
.....+||+++|++|||||||+++|+++. +...+.+|++.. ...+.+++ +.+.+||++|++++..++..+++.+|
T Consensus 17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d 92 (190)
T 2h57_A 17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQ 92 (190)
T ss_dssp ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCS
T ss_pred CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCC
Confidence 34567999999999999999999999988 677788888743 34445554 68899999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 93 ~ii~v~d~~~~~ 104 (190)
T 2h57_A 93 AIIFVIDSSDRL 104 (190)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEECCCHH
Confidence 999999999864
No 95
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.77 E-value=8.4e-19 Score=125.41 Aligned_cols=88 Identities=20% Similarity=0.319 Sum_probs=69.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc-cccchhhhhcCCCE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-FRAVTRSYYRGAAG 161 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-~~~~~~~~~~~~~~ 161 (173)
..+||+++|++|||||||+++|++.. +...+. +++.++....+.+++..+.+.+|||+|++. +..+++.+++.+++
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~ 83 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE-VLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 83 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G-GGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc-ccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCE
Confidence 46899999999999999999999643 444443 466666667778899999999999999876 55677889999999
Q ss_pred EEEEEeCCCCCC
Q psy13826 162 ALMVIDVSHVKE 173 (173)
Q Consensus 162 ~ilv~d~t~~~S 173 (173)
+++|||++|++|
T Consensus 84 ~i~v~dv~~~~s 95 (192)
T 2cjw_A 84 YLIVYSITDRAS 95 (192)
T ss_dssp EEEEEETTCHHH
T ss_pred EEEEEECCCHHH
Confidence 999999998754
No 96
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.77 E-value=2.5e-19 Score=130.08 Aligned_cols=91 Identities=32% Similarity=0.554 Sum_probs=77.3
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCCccccccchhhhhcCCC
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERFRAVTRSYYRGAA 160 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g~~~~~~~~~~~~~~~~ 160 (173)
.....+||+++|++|||||||+++|+++.+...+.++.+.......+... +..+.+.+|||+|++.+..++..+++.+|
T Consensus 7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 86 (218)
T 4djt_A 7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGAS 86 (218)
T ss_dssp ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCS
T ss_pred cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCC
Confidence 34567999999999999999999999999888888888877766555444 34489999999999999999999999999
Q ss_pred EEEEEEeCCCCC
Q psy13826 161 GALMVIDVSHVK 172 (173)
Q Consensus 161 ~~ilv~d~t~~~ 172 (173)
++|+|||+++++
T Consensus 87 ~~i~v~d~~~~~ 98 (218)
T 4djt_A 87 GAILFFDVTSRI 98 (218)
T ss_dssp EEEEEEETTCHH
T ss_pred EEEEEEeCCCHH
Confidence 999999999864
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=7.9e-19 Score=124.27 Aligned_cols=85 Identities=26% Similarity=0.488 Sum_probs=70.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+ ..+.||+|... ..+.++ .+.+.+||++|++.+..++..+++.+|+++
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 88 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILI 88 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEE
Confidence 3468999999999999999999998764 44667777443 344455 467899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 89 ~v~d~~~~~s 98 (181)
T 1fzq_A 89 YVIDSADRKR 98 (181)
T ss_dssp EEEETTCGGG
T ss_pred EEEECcCHHH
Confidence 9999998764
No 98
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=1.5e-18 Score=123.97 Aligned_cols=85 Identities=22% Similarity=0.510 Sum_probs=66.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++++. .+.||++.. ...+.. ..+.+.+||++|++++..+++.+++.+|++|
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 101 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEY--KNICFTVWDVGGQDKIRPLWRHYFQNTQGLI 101 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEE--TTEEEEEEECC-----CTTHHHHHHTCCEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEE--CCEEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 34689999999999999999999988876 356677633 333344 3478999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 102 lv~D~~~~~s 111 (192)
T 2b6h_A 102 FVVDSNDRER 111 (192)
T ss_dssp EEEETTCGGG
T ss_pred EEEECCCHHH
Confidence 9999999764
No 99
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.75 E-value=6.5e-18 Score=129.68 Aligned_cols=88 Identities=26% Similarity=0.480 Sum_probs=80.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++.+...+.+|++..+ ...+.+++..+.+.+||++|++.+..++..+++.+|+++
T Consensus 153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 231 (332)
T 2wkq_A 153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFL 231 (332)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEE
T ss_pred cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEE
Confidence 3468999999999999999999999999989999998766 456678899999999999999999999999999999999
Q ss_pred EEEeCCCCC
Q psy13826 164 MVIDVSHVK 172 (173)
Q Consensus 164 lv~d~t~~~ 172 (173)
+|||+++++
T Consensus 232 ~v~d~~~~~ 240 (332)
T 2wkq_A 232 ICFSLVSPA 240 (332)
T ss_dssp EEEETTCHH
T ss_pred EEEeCCCHH
Confidence 999999865
No 100
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.60 E-value=8.6e-20 Score=131.36 Aligned_cols=89 Identities=27% Similarity=0.483 Sum_probs=79.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+||++|++++..++..+++.+|++|
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 106 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFL 106 (204)
Confidence 4579999999999999999999999999888888887665 445567788889999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 107 lv~D~~~~~s 116 (204)
T 3th5_A 107 ICFSLVSPAS 116 (204)
Confidence 9999998764
No 101
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.75 E-value=1.5e-18 Score=123.27 Aligned_cols=85 Identities=20% Similarity=0.450 Sum_probs=71.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++++.. +.||++... ..+..+ .+.+.+|||+|++++..+++.+++.+|++|
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii 94 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVI 94 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEE
Confidence 356899999999999999999999888754 567777443 334444 467899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 95 ~v~d~~~~~s 104 (189)
T 2x77_A 95 YVVDSTDRDR 104 (189)
T ss_dssp EEEETTCCTT
T ss_pred EEEeCCCHHH
Confidence 9999999865
No 102
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.74 E-value=1.3e-18 Score=133.34 Aligned_cols=79 Identities=15% Similarity=0.177 Sum_probs=65.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc---chhhhhcCCCE
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA---VTRSYYRGAAG 161 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~---~~~~~~~~~~~ 161 (173)
||+++|++|||||||++++.++.++. .+.||+|.++.. ++ ..++++||||+||++|.. +++.||+++++
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999999999988764433 367889887753 22 458899999999999964 46899999999
Q ss_pred EEEEEeCCCC
Q psy13826 162 ALMVIDVSHV 171 (173)
Q Consensus 162 ~ilv~d~t~~ 171 (173)
+|+|||++++
T Consensus 76 ~IlV~Ditd~ 85 (331)
T 3r7w_B 76 LVYVIDSQDE 85 (331)
T ss_dssp EEEECCCSSC
T ss_pred EEEEEECCch
Confidence 9999999986
No 103
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.74 E-value=1.4e-18 Score=124.39 Aligned_cols=90 Identities=24% Similarity=0.398 Sum_probs=65.5
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEE--EE-CCeEEEEEEEeCCCccccccch---
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII--EV-HGEKIKLQIWDTAGQERFRAVT--- 152 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~--~~-~~~~~~l~i~D~~g~~~~~~~~--- 152 (173)
........+||+++|++|||||||++++.+. +... ++.+.++....+ .+ ++..+.+++||++|+++|....
T Consensus 13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (196)
T 3llu_A 13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDY 89 (196)
T ss_dssp -------CCEEEEEESTTSSHHHHHHHHHSC-CCGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCH
T ss_pred CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhc
Confidence 3455667899999999999999999987764 3332 444444332222 23 3667899999999999988776
Q ss_pred hhhhcCCCEEEEEEeCCCC
Q psy13826 153 RSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~~ 171 (173)
+.+++.+|++|+|||++++
T Consensus 90 ~~~~~~~~~~i~v~d~~~~ 108 (196)
T 3llu_A 90 EMIFRGTGALIYVIDAQDD 108 (196)
T ss_dssp HHHHHTCSEEEEEEETTSC
T ss_pred ccccccCCEEEEEEECCCc
Confidence 8999999999999999986
No 104
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=2.3e-18 Score=121.44 Aligned_cols=85 Identities=26% Similarity=0.499 Sum_probs=68.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++++++++ ..+.+|++... ..+.+++ ..+.+||++|++++..++..+++.+|+++
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 90 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVI 90 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEE
Confidence 3568999999999999999999998887 55677887443 3444544 78899999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 91 ~v~d~~~~~s 100 (183)
T 1moz_A 91 FVVDSTDKDR 100 (183)
T ss_dssp EEEETTCTTT
T ss_pred EEEECCCHHH
Confidence 9999999864
No 105
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.74 E-value=4.7e-18 Score=123.03 Aligned_cols=85 Identities=16% Similarity=0.228 Sum_probs=69.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe-EEEEEEEeCCCcccccc-chhhhhcCCCE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE-KIKLQIWDTAGQERFRA-VTRSYYRGAAG 161 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~l~i~D~~g~~~~~~-~~~~~~~~~~~ 161 (173)
...+||+++|++|||||||+++|+++.+...+.++. .++.. +.+++. .+.+.+|||+|++++.. +++.+++.+|+
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 81 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT-DSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARA 81 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS-CEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc-eeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCE
Confidence 346899999999999999999999999888776544 33332 556544 68899999999999987 88899999999
Q ss_pred EEEEEeCCCC
Q psy13826 162 ALMVIDVSHV 171 (173)
Q Consensus 162 ~ilv~d~t~~ 171 (173)
+|+|||+++.
T Consensus 82 ~i~v~d~~~~ 91 (214)
T 2fh5_B 82 VVFVVDSAAF 91 (214)
T ss_dssp EEEEEETTTH
T ss_pred EEEEEECCCc
Confidence 9999999874
No 106
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.73 E-value=8.8e-18 Score=117.82 Aligned_cols=86 Identities=20% Similarity=0.255 Sum_probs=73.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|+++.+...+.++.+.++....+.+++. .+.+|||+|++++..++..+++.+|++|
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 45689999999999999999999999988777776665555555666665 4679999999999999999999999999
Q ss_pred EEEeCCCC
Q psy13826 164 MVIDVSHV 171 (173)
Q Consensus 164 lv~d~t~~ 171 (173)
+|||++++
T Consensus 84 ~v~d~~~~ 91 (178)
T 2lkc_A 84 LVVAADDG 91 (178)
T ss_dssp EEEETTCC
T ss_pred EEEECCCC
Confidence 99999884
No 107
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.72 E-value=1.6e-17 Score=127.01 Aligned_cols=86 Identities=24% Similarity=0.383 Sum_probs=70.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-----ccchhhhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-----RAVTRSYY 156 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----~~~~~~~~ 156 (173)
..+||+++|++|||||||+++++++. +. ..+.+|++..+.. +.+++ .+.+.+||++|++++ ..+++.++
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~--~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~ 78 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH--LRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIF 78 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE--EEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE--EEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHh
Confidence 35899999999999999999999873 32 2466788776643 33444 678999999999998 78889999
Q ss_pred cCCCEEEEEEeCCCCCC
Q psy13826 157 RGAAGALMVIDVSHVKE 173 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~S 173 (173)
+++|++|+|||+++++|
T Consensus 79 ~~ad~vi~V~D~t~~~s 95 (307)
T 3r7w_A 79 QMVQVLIHVFDVESTEV 95 (307)
T ss_dssp TTCSEEEEEEETTCSCH
T ss_pred ccCCEEEEEEECCChhh
Confidence 99999999999999864
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.69 E-value=3.6e-17 Score=116.46 Aligned_cols=88 Identities=16% Similarity=0.295 Sum_probs=62.8
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------ccccccch
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRAVT 152 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~~ 152 (173)
....++|+++|++|||||||+++++++.+...+.++.+.+.......++. .+.+|||+| ++.+..++
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 20 EGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp CSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHH
Confidence 34578999999999999999999999987777777777665555555544 588999999 78888888
Q ss_pred hhhhcCC---CEEEEEEeCCCCCC
Q psy13826 153 RSYYRGA---AGALMVIDVSHVKE 173 (173)
Q Consensus 153 ~~~~~~~---~~~ilv~d~t~~~S 173 (173)
..+++.+ |++++|||++++.+
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~ 120 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPS 120 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCC
T ss_pred HHHHhhhhcCCEEEEEEECCCCCC
Confidence 8888887 99999999998653
No 109
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=1.9e-16 Score=110.33 Aligned_cols=84 Identities=20% Similarity=0.306 Sum_probs=62.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-- 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~-- 157 (173)
.+||+++|++|||||||++++++..+...+.|+...+.....+.+++ ..+.+|||+|++++. .+.+.+++
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINE 80 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcC
Confidence 47999999999999999999999876555555555444455555555 478999999998875 34466775
Q ss_pred CCCEEEEEEeCCCC
Q psy13826 158 GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ~~~~~ilv~d~t~~ 171 (173)
+++++++|||+++.
T Consensus 81 ~~~~~i~v~D~~~~ 94 (165)
T 2wji_A 81 KPDLVVNIVDATAL 94 (165)
T ss_dssp CCSEEEEEEETTCH
T ss_pred CCCEEEEEecCCch
Confidence 89999999999874
No 110
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=128.04 Aligned_cols=84 Identities=23% Similarity=0.511 Sum_probs=65.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
..+||+++|++|||||||+++|.++.+... .||++..+. .+. ...+.+.||||+|++.|..++..+++.+|++|+
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~~~--~~~--~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vil 238 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFNVE--TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 238 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEEEE--EEE--ETTEEEEEEECC-----CCSHHHHHTTEEEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceEEE--EEe--cCcEEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 467999999999999999999999887654 357665543 223 345789999999999999999999999999999
Q ss_pred EEeCCCCCC
Q psy13826 165 VIDVSHVKE 173 (173)
Q Consensus 165 v~d~t~~~S 173 (173)
|||+++++|
T Consensus 239 V~D~~~~~s 247 (329)
T 3o47_A 239 VVDSNDRER 247 (329)
T ss_dssp EEETTCSSS
T ss_pred EEECCchHH
Confidence 999999865
No 111
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.68 E-value=5.2e-18 Score=126.54 Aligned_cols=93 Identities=25% Similarity=0.437 Sum_probs=68.8
Q ss_pred CCCCcceeeEEEEEeCC---------CCChHHHHHHHHh---CCCCCCCCCce-eeeeEEEEE--------------EEC
Q psy13826 79 GQYSYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKFMPDCPHTI-GVEFGTRII--------------EVH 131 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~---------~vGKssl~~~~~~---~~~~~~~~~t~-~~~~~~~~~--------------~~~ 131 (173)
........+||+++|++ |||||||+++|++ +.+...+.+|+ +.++....+ .++
T Consensus 12 ~~~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 91 (255)
T 3c5h_A 12 ENLYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLED 91 (255)
T ss_dssp TTSSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC-----
T ss_pred CCCCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccC
Confidence 33446678999999999 9999999999999 66777777775 444322211 246
Q ss_pred CeEEEEEEEe-----------------------CCCccccccchhhhhc---------------------CCCEEEEEEe
Q psy13826 132 GEKIKLQIWD-----------------------TAGQERFRAVTRSYYR---------------------GAAGALMVID 167 (173)
Q Consensus 132 ~~~~~l~i~D-----------------------~~g~~~~~~~~~~~~~---------------------~~~~~ilv~d 167 (173)
+..+.++||| ++|+++|..+++.+++ +||++|+|||
T Consensus 92 ~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D 171 (255)
T 3c5h_A 92 CVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGID 171 (255)
T ss_dssp ----CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEE
T ss_pred CcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEE
Confidence 7788999999 7888888888888887 7999999999
Q ss_pred CCCC
Q psy13826 168 VSHV 171 (173)
Q Consensus 168 ~t~~ 171 (173)
++++
T Consensus 172 ~t~~ 175 (255)
T 3c5h_A 172 VSRG 175 (255)
T ss_dssp CBC-
T ss_pred CCCC
Confidence 9997
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.4e-16 Score=129.13 Aligned_cols=85 Identities=25% Similarity=0.527 Sum_probs=72.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 163 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i 163 (173)
...+||+++|++|||||||+++|.++++.. +.||++.++.. ++...+.+.+|||+|++.+..++..+++.+|++|
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i 394 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET----VTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLI 394 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE----EESSSCEEEEEEECCCGGGSGGGGGGGTTCCEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE----EEeCCEEEEEEECCCcHHHHHHHHHHhccCCEEE
Confidence 457999999999999999999999998654 56788866543 3334568999999999999999999999999999
Q ss_pred EEEeCCCCCC
Q psy13826 164 MVIDVSHVKE 173 (173)
Q Consensus 164 lv~d~t~~~S 173 (173)
+|||+++++|
T Consensus 395 ~V~D~~~~~s 404 (497)
T 3lvq_E 395 FVVDCADRDR 404 (497)
T ss_dssp EEEETTCGGG
T ss_pred EEEECcchhH
Confidence 9999999764
No 113
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.65 E-value=1.3e-15 Score=106.92 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=63.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCC--CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc--------hhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFM--PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV--------TRS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~--------~~~ 154 (173)
..+||+++|++|||||||++++++..+. ..+. +...++....+.+++. .+.+|||+|++++... ...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~-~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 79 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIA-GTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQ 79 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSST-TCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCC-CceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHH
Confidence 3479999999999999999999987642 2233 3333444556667765 4789999998754311 124
Q ss_pred hhcCCCEEEEEEeCCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~S 173 (173)
+++.+|++++|||+++++|
T Consensus 80 ~~~~ad~~i~v~D~~~~~s 98 (172)
T 2gj8_A 80 EIEQADRVLFMVDGTTTDA 98 (172)
T ss_dssp HHHTCSEEEEEEETTTCCC
T ss_pred HHHhCCEEEEEEECCCCCC
Confidence 6899999999999999865
No 114
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.65 E-value=6.8e-17 Score=114.92 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=64.2
Q ss_pred hhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeC
Q psy13826 66 NLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142 (173)
Q Consensus 66 ~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~ 142 (173)
.+.....+.............++|+++|++|||||||++++++..+.. .+.++.+. +...+.+.+||+
T Consensus 28 ~l~~~l~~~~~~~~~~~~~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~---------~~~~~~~~l~Dt 98 (193)
T 2ged_A 28 QWREWIDEKLGGGSGGGGSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA---------DYDGSGVTLVDF 98 (193)
T ss_dssp HHHHHHHHHC--------CCCCEEEEECCTTSSHHHHHHHHHHSSCC---------------------CCCCTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceee---------eecCCeEEEEEC
Confidence 333333333333333344567999999999999999999999987654 22233222 124457889999
Q ss_pred CCccccccchhhhhcC----CCEEEEEEeCC-CC
Q psy13826 143 AGQERFRAVTRSYYRG----AAGALMVIDVS-HV 171 (173)
Q Consensus 143 ~g~~~~~~~~~~~~~~----~~~~ilv~d~t-~~ 171 (173)
+|++.+...+..+++. +|++|+|||++ ++
T Consensus 99 ~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~ 132 (193)
T 2ged_A 99 PGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDP 132 (193)
T ss_dssp TTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCH
T ss_pred CCCchHHHHHHHHHHhhcccCCEEEEEEECCCCc
Confidence 9999998888888876 89999999998 54
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.65 E-value=9.2e-16 Score=105.65 Aligned_cols=84 Identities=18% Similarity=0.213 Sum_probs=59.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc-------ccchhhhhcC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF-------RAVTRSYYRG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~-------~~~~~~~~~~ 158 (173)
.||+++|++|||||||+++++++.+.. ...+....+.....+..++. .+.+||++|++.+ ...+..+++.
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 79 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALED 79 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHh
Confidence 689999999999999999999987531 22223333344445555554 6789999999873 3445668899
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
+|++++|||++++.
T Consensus 80 ~~~~i~v~d~~~~~ 93 (161)
T 2dyk_A 80 AEVVLFAVDGRAEL 93 (161)
T ss_dssp CSEEEEEEESSSCC
T ss_pred CCEEEEEEECCCcc
Confidence 99999999999853
No 116
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.64 E-value=1e-16 Score=116.26 Aligned_cols=82 Identities=22% Similarity=0.365 Sum_probs=66.7
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCC---CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcC-
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP---DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRG- 158 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~- 158 (173)
....++|+++|++|||||||+++++++.+.. .+.++++.++ ..+.+.+||++|++.+...+..+++.
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~Dt~G~~~~~~~~~~~~~~~ 79 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY---------DGSGVTLVDFPGHVKLRYKLSDYLKTR 79 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG---------GGSSCEEEECCCCGGGTHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe---------eCceEEEEECCCcHHHHHHHHHHHHhc
Confidence 3457899999999999999999999988754 3455554333 44578999999999999888888887
Q ss_pred ---CCEEEEEEeCC-CCCC
Q psy13826 159 ---AAGALMVIDVS-HVKE 173 (173)
Q Consensus 159 ---~~~~ilv~d~t-~~~S 173 (173)
++++|+|||++ ++++
T Consensus 80 ~~~~~~~i~v~D~~~~~~~ 98 (218)
T 1nrj_B 80 AKFVKGLIFMVDSTVDPKK 98 (218)
T ss_dssp GGGEEEEEEEEETTSCTTC
T ss_pred cccCCEEEEEEECCCChHH
Confidence 89999999999 6653
No 117
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.60 E-value=1.8e-15 Score=107.00 Aligned_cols=84 Identities=20% Similarity=0.290 Sum_probs=65.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc-
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR- 157 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~- 157 (173)
..+||+++|++|||||||++++++..+...+.|+...+.....+..++ ..+.+|||+|++.+. .++..+++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 468999999999999999999998765544445555555555555554 678999999998875 34566665
Q ss_pred -CCCEEEEEEeCCC
Q psy13826 158 -GAAGALMVIDVSH 170 (173)
Q Consensus 158 -~~~~~ilv~d~t~ 170 (173)
.++++++|+|.++
T Consensus 84 ~~~~~~i~v~d~~~ 97 (188)
T 2wjg_A 84 EKPDLVVNIVDATA 97 (188)
T ss_dssp HCCSEEEEEEEGGG
T ss_pred cCCCEEEEEecchh
Confidence 5999999999875
No 118
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.59 E-value=5.7e-16 Score=126.61 Aligned_cols=90 Identities=24% Similarity=0.342 Sum_probs=67.1
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEE------EEE--CCeEEEEEEEeCCCccccccchh
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI------IEV--HGEKIKLQIWDTAGQERFRAVTR 153 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~------~~~--~~~~~~l~i~D~~g~~~~~~~~~ 153 (173)
.....+||+++|++|||||||+++++++.+...+.+|++.++.... +.+ ++..+.+.+||++|++.+..+.+
T Consensus 37 ~~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~ 116 (535)
T 3dpu_A 37 VHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ 116 (535)
T ss_dssp BCCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH
Confidence 4556799999999999999999999999998889999998876542 111 33467899999999999999999
Q ss_pred hhhcCCCEEEEEEeCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~ 171 (173)
.+++.++++|+|||+++.
T Consensus 117 ~~l~~~d~ii~V~D~s~~ 134 (535)
T 3dpu_A 117 FFMTRSSVYMLLLDSRTD 134 (535)
T ss_dssp HHHHSSEEEEEEECGGGG
T ss_pred HHccCCcEEEEEEeCCCc
Confidence 999999999999999864
No 119
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.59 E-value=3.4e-15 Score=109.18 Aligned_cols=87 Identities=20% Similarity=0.158 Sum_probs=59.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCc------cc----cccchh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ------ER----FRAVTR 153 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~------~~----~~~~~~ 153 (173)
...+||+++|++|||||||+++|+++.+.....+....+.....+..+ ...+.+|||+|+ ++ +.. +.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK--LNKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET--TEEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC--CCeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 456899999999999999999999987642222211112222222233 367899999998 33 222 23
Q ss_pred hhhcCCCEEEEEEeCCCCCC
Q psy13826 154 SYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t~~~S 173 (173)
.++..+|++|+|||++++.|
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s 123 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCG 123 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTS
T ss_pred HhhccccEEEEEEecccccC
Confidence 45788999999999999754
No 120
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=3.1e-15 Score=110.26 Aligned_cols=91 Identities=18% Similarity=0.218 Sum_probs=61.2
Q ss_pred CCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC--ceeeeeEEEEEEECCeEEEEEEEeCCCc-----------c
Q psy13826 80 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH--TIGVEFGTRIIEVHGEKIKLQIWDTAGQ-----------E 146 (173)
Q Consensus 80 ~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~--t~~~~~~~~~~~~~~~~~~l~i~D~~g~-----------~ 146 (173)
+......+||+++|++|||||||++++++..+.....+ ++........+.+++. .+.||||||. +
T Consensus 23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~ 100 (239)
T 3lxx_A 23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSK 100 (239)
T ss_dssp -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTE--EEEEEECCSCC-----CHHHHH
T ss_pred CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHH
Confidence 33445689999999999999999999999887665544 2333333444455554 6789999993 3
Q ss_pred ccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
.+......+++.+|++|+|+|+++..
T Consensus 101 ~~~~~~~~~~~~~~~~l~v~d~~~~~ 126 (239)
T 3lxx_A 101 EIIRCILLTSPGPHALLLVVPLGRYT 126 (239)
T ss_dssp HHHHHHHHTTTCCSEEEEEEETTCCS
T ss_pred HHHHHHHhcCCCCcEEEEEeeCCCCC
Confidence 34444455667899999999997643
No 121
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.58 E-value=5.5e-15 Score=110.39 Aligned_cols=86 Identities=20% Similarity=0.238 Sum_probs=63.6
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY-- 156 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~-- 156 (173)
..+||+++|++|||||||+++|++..+.....|....+.....+... ...+.+|||||+..+.. +...++
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~--~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK--GYTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET--TEEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC--CeEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 46899999999999999999999877543333333333333333333 36789999999988764 335566
Q ss_pred cCCCEEEEEEeCCCCC
Q psy13826 157 RGAAGALMVIDVSHVK 172 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~~ 172 (173)
..+|++++|+|+++.+
T Consensus 82 ~~~d~ii~V~D~t~~~ 97 (258)
T 3a1s_A 82 GDADLVILVADSVNPE 97 (258)
T ss_dssp SCCSEEEEEEETTSCH
T ss_pred cCCCEEEEEeCCCchh
Confidence 5899999999999864
No 122
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.58 E-value=5.8e-15 Score=104.68 Aligned_cols=88 Identities=19% Similarity=0.277 Sum_probs=67.5
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC----------cccccc
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG----------QERFRA 150 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~ 150 (173)
.+....+||+++|++|||||||+++++++.+ ..+.++.+.+........+. .+.+|||+| ++.+..
T Consensus 18 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~ 93 (195)
T 3pqc_A 18 YPPPLKGEVAFVGRSNVGKSSLLNALFNRKI-AFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKR 93 (195)
T ss_dssp CCCCTTCEEEEEEBTTSSHHHHHHHHHTSCC-SCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHcCcc-ccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHH
Confidence 3445678999999999999999999999873 44555666555444433433 477999999 777888
Q ss_pred chhhhhcCC---CEEEEEEeCCCCC
Q psy13826 151 VTRSYYRGA---AGALMVIDVSHVK 172 (173)
Q Consensus 151 ~~~~~~~~~---~~~ilv~d~t~~~ 172 (173)
+++.+++.+ +++++|+|.++..
T Consensus 94 ~~~~~~~~~~~~~~vi~v~d~~~~~ 118 (195)
T 3pqc_A 94 LVEDYFKNRWSLQMVFLLVDGRIPP 118 (195)
T ss_dssp HHHHHHHHCTTEEEEEEEEETTSCC
T ss_pred HHHHHHhcCcCceEEEEEecCCCCC
Confidence 888888876 9999999998753
No 123
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.56 E-value=1.4e-15 Score=114.35 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=62.3
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc------cchhhhhc--
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR------AVTRSYYR-- 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~------~~~~~~~~-- 157 (173)
.+||+++|++|||||||+++|++..+.....| |.++......++. ...+.+|||||++.+. .+.+.|+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~v~~~p--g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~ 79 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQRVGNWP--GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQ 79 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCCCCSSS--CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCcccCCC--CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcC
Confidence 57999999999999999999998763332223 3333333334454 5678999999998875 45566776
Q ss_pred CCCEEEEEEeCCCCC
Q psy13826 158 GAAGALMVIDVSHVK 172 (173)
Q Consensus 158 ~~~~~ilv~d~t~~~ 172 (173)
.+|++++|||+++.+
T Consensus 80 ~~d~vi~V~D~t~~e 94 (272)
T 3b1v_A 80 RADSILNVVDATNLE 94 (272)
T ss_dssp CCSEEEEEEEGGGHH
T ss_pred CCCEEEEEecCCchH
Confidence 599999999998753
No 124
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.56 E-value=4.8e-16 Score=109.98 Aligned_cols=80 Identities=25% Similarity=0.250 Sum_probs=62.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC-----------ccccccchhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG-----------QERFRAVTRSY 155 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g-----------~~~~~~~~~~~ 155 (173)
+||+++|++|||||||+++++++.+...+.|+..... ..+... .+.+|||+| ++.+..++..+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t~~~--~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 75 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVTRKI--IEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVHF 75 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCTTSC--EEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcccee--EEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHHH
Confidence 6999999999999999999999988777766554332 233333 688999999 77788888888
Q ss_pred hcC-CCEEEEEEeCCCCC
Q psy13826 156 YRG-AAGALMVIDVSHVK 172 (173)
Q Consensus 156 ~~~-~~~~ilv~d~t~~~ 172 (173)
++. ++++++|||++|++
T Consensus 76 ~~~~~~~~~~v~~v~d~~ 93 (190)
T 2cxx_A 76 IEDNAKNIDVAVLVVDGK 93 (190)
T ss_dssp HHHHGGGCCEEEEEEETT
T ss_pred HHhhhccCCEEEEEEcch
Confidence 887 88777777777654
No 125
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.56 E-value=3.8e-15 Score=111.14 Aligned_cols=84 Identities=20% Similarity=0.193 Sum_probs=65.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSYY 156 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~~~~~ 156 (173)
.+|+++|.+|||||||++++.+..+.....|++..+.....+..++. .+.+|||||+..+.. +...++
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~ 79 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSV 79 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence 48999999999999999999988654444455555555556666665 788999999987753 556677
Q ss_pred --cCCCEEEEEEeCCCCC
Q psy13826 157 --RGAAGALMVIDVSHVK 172 (173)
Q Consensus 157 --~~~~~~ilv~d~t~~~ 172 (173)
+.+|++|+|+|+++++
T Consensus 80 ~~~~~d~vi~VvDas~~~ 97 (256)
T 3iby_A 80 IDLEYDCIINVIDACHLE 97 (256)
T ss_dssp HHSCCSEEEEEEEGGGHH
T ss_pred hhCCCCEEEEEeeCCCch
Confidence 8999999999998753
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.54 E-value=1.4e-14 Score=108.75 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=66.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc------chhhhh--c
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA------VTRSYY--R 157 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~------~~~~~~--~ 157 (173)
.+||+++|++|||||||++++++..+.....++.+.+.....+..++. .+.+|||||+..+.. +...|+ .
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 80 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDG 80 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhcc
Confidence 579999999999999999999998765445555665665556666655 488999999988765 566666 6
Q ss_pred CCCEEEEEEeCCCC
Q psy13826 158 GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ~~~~~ilv~d~t~~ 171 (173)
.+|++++|+|.++.
T Consensus 81 ~~d~vi~v~D~~~~ 94 (271)
T 3k53_A 81 NADVIVDIVDSTCL 94 (271)
T ss_dssp CCSEEEEEEEGGGH
T ss_pred CCcEEEEEecCCcc
Confidence 89999999999874
No 127
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.54 E-value=2.6e-15 Score=109.10 Aligned_cols=89 Identities=17% Similarity=0.228 Sum_probs=63.9
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEEC-CeEEEEEEEeCCC----------ccccccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAG----------QERFRAV 151 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-~~~~~l~i~D~~g----------~~~~~~~ 151 (173)
....++|+++|++|||||||+++++++.+.....++.+.+.......+. .....+.||||+| ++.+..+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3457899999999999999999999987433333333333333334444 4446788999999 4555666
Q ss_pred hhhhhcC---CCEEEEEEeCCCC
Q psy13826 152 TRSYYRG---AAGALMVIDVSHV 171 (173)
Q Consensus 152 ~~~~~~~---~~~~ilv~d~t~~ 171 (173)
...+++. +|++++|+|.++.
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~ 128 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRP 128 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSC
T ss_pred HHHHHhcCcCcCEEEEEEeCCCC
Confidence 6677766 7789999999875
No 128
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.53 E-value=1.8e-14 Score=106.83 Aligned_cols=85 Identities=18% Similarity=0.160 Sum_probs=55.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeee--EEEEEEECCeEEEEEEEeCCCc--------cccccchh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEF--GTRIIEVHGEKIKLQIWDTAGQ--------ERFRAVTR 153 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~l~i~D~~g~--------~~~~~~~~ 153 (173)
...++|+++|.+|||||||++++++..+.....++.+.+. ....+..++ ..+.+|||||. +.+.....
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHH
Confidence 4579999999999999999999999876544333322222 222333444 46789999996 33332222
Q ss_pred hhh----cCCCEEEEEEeCCC
Q psy13826 154 SYY----RGAAGALMVIDVSH 170 (173)
Q Consensus 154 ~~~----~~~~~~ilv~d~t~ 170 (173)
.++ +.+|++|+|+|+++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~ 117 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLGR 117 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETTB
T ss_pred HHHHhcCCCCCEEEEEEeCCC
Confidence 333 89999999999975
No 129
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.53 E-value=2.9e-14 Score=108.69 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=61.1
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--------cccchhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--------FRAVTRS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--------~~~~~~~ 154 (173)
...+|+++|.+|||||||++++++..+... ...|..... ...+. ....++.+|||||+.. +......
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i-~~i~~--~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~ 82 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRL-RGILT--EGRRQIVFVDTPGLHKPMDALGEFMDQEVYE 82 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCE-EEEEE--ETTEEEEEEECCCCCCCCSHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEE-EEEEE--eCCcEEEEecCccccchhhHHHHHHHHHHHH
Confidence 456899999999999999999999886431 222322211 11222 2346789999999876 3445567
Q ss_pred hhcCCCEEEEEEeCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~ 172 (173)
+++.+|++++|||++++.
T Consensus 83 ~l~~ad~il~VvD~~~~~ 100 (301)
T 1wf3_A 83 ALADVNAVVWVVDLRHPP 100 (301)
T ss_dssp HTSSCSEEEEEEETTSCC
T ss_pred HHhcCCEEEEEEECCCCC
Confidence 889999999999998753
No 130
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.52 E-value=9.6e-14 Score=103.40 Aligned_cols=86 Identities=15% Similarity=0.149 Sum_probs=61.3
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCCCCc-eeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDCPHT-IGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT-------- 152 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~~~t-~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~-------- 152 (173)
....++|+++|++|||||||++++++.. +...+.++ +........+..++ ..+.||||||+..+....
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHH
Confidence 4456899999999999999999999887 55444443 33333333444444 468899999987653221
Q ss_pred ---hhhhcCCCEEEEEEeCCC
Q psy13826 153 ---RSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 153 ---~~~~~~~~~~ilv~d~t~ 170 (173)
..+++.+|++|+|||+++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETTC
T ss_pred HHHHhcCCCCcEEEEEEeCCC
Confidence 236789999999999985
No 131
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.50 E-value=6.7e-14 Score=111.81 Aligned_cols=83 Identities=24% Similarity=0.273 Sum_probs=56.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc---------ccchhhhh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF---------RAVTRSYY 156 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~---------~~~~~~~~ 156 (173)
.+|+++|.+|||||||+++|+++... ....|.+..+.....+.+++. .+.+|||+|++.. ......++
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 79 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMI 79 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHH
Confidence 47999999999999999999987642 122223333344455566665 4689999997642 33456789
Q ss_pred cCCCEEEEEEeCCCC
Q psy13826 157 RGAAGALMVIDVSHV 171 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~ 171 (173)
+.||++|+|||+++.
T Consensus 80 ~~ad~il~V~D~~~~ 94 (439)
T 1mky_A 80 READLVLFVVDGKRG 94 (439)
T ss_dssp TTCSEEEEEEETTTC
T ss_pred HhCCEEEEEEECCCC
Confidence 999999999999875
No 132
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.50 E-value=1.5e-13 Score=102.67 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=61.1
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhc-----
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYR----- 157 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~----- 157 (173)
..++|+++|++|||||||++++++..+ ...+.++.. ......+..++ ..+.+|||||++.+....+.+++
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~-~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGL-RPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CC-CCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcce-eeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 469999999999999999999999874 233333221 22233334444 37899999999988766655554
Q ss_pred ----CCCEEEEEEeCCCC
Q psy13826 158 ----GAAGALMVIDVSHV 171 (173)
Q Consensus 158 ----~~~~~ilv~d~t~~ 171 (173)
.+|++++|+|+++.
T Consensus 112 l~~~~~~~il~V~~~d~~ 129 (262)
T 3def_A 112 LVNRTIDVLLYVDRLDVY 129 (262)
T ss_dssp TTTCEECEEEEEEESSCS
T ss_pred HhcCCCCEEEEEEcCCCC
Confidence 78999999998764
No 133
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.49 E-value=1.1e-13 Score=105.79 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=62.7
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCCCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR--------- 149 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~--------- 149 (173)
......-.|+++|.+|||||||++++++..+... ...+.. .........+ ....+.+|||||+..+.
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~-~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~ 82 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTR-MRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSM 82 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCC-SCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCcee-eEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHH
Confidence 3445677999999999999999999999876532 121221 1112222222 15678899999986544
Q ss_pred -cchhhhhcCCCEEEEEEeCCCCC
Q psy13826 150 -AVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 150 -~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
.....+++.+|++++|+|+++..
T Consensus 83 ~~~~~~~l~~aD~il~VvD~~~~~ 106 (308)
T 3iev_A 83 VEIAKQSLEEADVILFMIDATEGW 106 (308)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTBS
T ss_pred HHHHHHHhhcCCEEEEEEeCCCCC
Confidence 45567889999999999999864
No 134
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.46 E-value=1.1e-13 Score=104.20 Aligned_cols=84 Identities=19% Similarity=0.230 Sum_probs=62.1
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcccccc----------chhhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA----------VTRSY 155 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~----------~~~~~ 155 (173)
.++|+++|.+|||||||++++++..+.....|++..+.....+..++. .+.+|||||+..+.. +...|
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~~--~~~liDtpG~~~~~~~~~~~~~~e~i~~~~ 80 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTDH--QVTLVDLPGTYSLTTISSQTSLDEQIACHY 80 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSSC--EEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCCC--ceEEEECcCCCccccccccCCHHHHHHHHH
Confidence 589999999999999999999988754444444444444555555554 567899999987662 23333
Q ss_pred h--cCCCEEEEEEeCCCC
Q psy13826 156 Y--RGAAGALMVIDVSHV 171 (173)
Q Consensus 156 ~--~~~~~~ilv~d~t~~ 171 (173)
+ +.+|++|+|+|.++.
T Consensus 81 ~~~~~~d~ii~VvD~~~~ 98 (274)
T 3i8s_A 81 ILSGDADLLINVVDASNL 98 (274)
T ss_dssp HHHTCCSEEEEEEEGGGH
T ss_pred HhhcCCCEEEEEecCCCh
Confidence 3 799999999999874
No 135
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.46 E-value=2e-14 Score=114.77 Aligned_cols=85 Identities=16% Similarity=0.177 Sum_probs=55.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc--------ccccchhhhhcC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE--------RFRAVTRSYYRG 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~--------~~~~~~~~~~~~ 158 (173)
.+|+++|++|||||||++++++..+. ...++.|.+.......+......+.+|||+|++ .+...+..+++.
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ 82 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDE 82 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHh
Confidence 68999999999999999999987653 233455554443333444444578999999985 556667788999
Q ss_pred CCEEEEEEeCCCCC
Q psy13826 159 AAGALMVIDVSHVK 172 (173)
Q Consensus 159 ~~~~ilv~d~t~~~ 172 (173)
||++|+|+|+++..
T Consensus 83 ad~il~vvD~~~~~ 96 (436)
T 2hjg_A 83 ADVIIFMVNGREGV 96 (436)
T ss_dssp CSEEEEEEETTTCS
T ss_pred CCEEEEEEeCCCCC
Confidence 99999999998753
No 136
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.45 E-value=1.1e-13 Score=111.39 Aligned_cols=86 Identities=20% Similarity=0.181 Sum_probs=49.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~ 154 (173)
..+||+++|++|||||||+++|++.+. ...+. ....+.....+.+++ +.+.+|||+|++.+...+ ..
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~-gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMP-GTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRM 308 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETT--EEEEEEC--------------------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCC-CceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHh
Confidence 468999999999999999999998753 23333 222333344555655 468999999997765433 34
Q ss_pred hhcCCCEEEEEEeCCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~S 173 (173)
+++.+|++|+|||++++.+
T Consensus 309 ~~~~aD~vl~VvD~s~~~s 327 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERL 327 (476)
T ss_dssp CCSSCSEEEEEEETTTCSS
T ss_pred hcccCCEEEEEEECCCCcc
Confidence 6889999999999998764
No 137
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.43 E-value=2.3e-13 Score=102.03 Aligned_cols=85 Identities=15% Similarity=0.154 Sum_probs=58.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhh-------h--
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRS-------Y-- 155 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~-------~-- 155 (173)
..++|+++|++|||||||++++++..+... .++.+.+.......+......+.+|||||++.+..+... +
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~ 116 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSI-SPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLL 116 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCC-CSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccc-cCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhh
Confidence 468999999999999999999998875321 112222222222333334567899999999877544332 1
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
.+.+|++|+|||++.
T Consensus 117 ~~~~d~il~v~~~d~ 131 (270)
T 1h65_A 117 DKTIDVLLYVDRLDA 131 (270)
T ss_dssp TCEECEEEEEEESSC
T ss_pred cCCCCEEEEEEeCCC
Confidence 346999999999875
No 138
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.41 E-value=1.7e-13 Score=110.78 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=63.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CCCC---------------------------CCCceeeeeEEEEEEECCeEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD---------------------------CPHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~---------------------------~~~t~~~~~~~~~~~~~~~~~ 135 (173)
..+||+++|.+++|||||+++|++.. +... .....|.++......++....
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 57999999999999999999998651 1100 001113333223333444556
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
.+.||||+|+++|......+++.+|++|+|+|+++.
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCC
Confidence 889999999999998889999999999999999885
No 139
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.40 E-value=1.1e-12 Score=104.75 Aligned_cols=87 Identities=22% Similarity=0.171 Sum_probs=63.8
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCC-------------------------------CCCCCCceeeeeEEEEEEEC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF-------------------------------MPDCPHTIGVEFGTRIIEVH 131 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~-------------------------------~~~~~~t~~~~~~~~~~~~~ 131 (173)
....++|+++|.+++|||||+++|+...- ..+..+.+..+.... .+.
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~--~~~ 91 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRA--YFE 91 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEE--EEe
Confidence 34578999999999999999999965421 111112233333333 333
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
.....+.||||||+++|......+++.+|++|+|+|+++.
T Consensus 92 ~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g 131 (439)
T 3j2k_7 92 TEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKG 131 (439)
T ss_pred cCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCC
Confidence 3445889999999999988888899999999999999874
No 140
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.40 E-value=7.8e-14 Score=111.94 Aligned_cols=86 Identities=16% Similarity=0.149 Sum_probs=62.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCC--------ccccccchhhhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG--------QERFRAVTRSYY 156 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g--------~~~~~~~~~~~~ 156 (173)
...+|+++|++|||||||++++++..+. ...++.|.+.......+......+.+|||+| ++.+......++
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 4579999999999999999999987653 2333555555554555555556899999999 777777888899
Q ss_pred cCCCEEEEEEeCCCC
Q psy13826 157 RGAAGALMVIDVSHV 171 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~ 171 (173)
+.+|++|+|+|.++.
T Consensus 101 ~~ad~il~VvD~~~~ 115 (456)
T 4dcu_A 101 DEADVIIFMVNGREG 115 (456)
T ss_dssp HHCSEEEEEEESSSC
T ss_pred hhCCEEEEEEeCCCC
Confidence 999999999998763
No 141
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.38 E-value=2.6e-13 Score=109.38 Aligned_cols=85 Identities=28% Similarity=0.337 Sum_probs=63.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-cccc--------chhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-RFRA--------VTRS 154 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-~~~~--------~~~~ 154 (173)
.++|+++|.+|||||||++++++.++ ..++..|. .+.....+.+++. .+.+|||+|+. .+.. ....
T Consensus 243 ~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT-~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~ 319 (482)
T 1xzp_A 243 GLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTT-RDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQ 319 (482)
T ss_dssp CEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCS-SCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHH
T ss_pred CCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCee-eeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHH
Confidence 48999999999999999999998863 34444333 3333445566654 57899999987 5542 2346
Q ss_pred hhcCCCEEEEEEeCCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~S 173 (173)
+++.+|++|+|||++++.+
T Consensus 320 ~~~~aD~vl~VvD~s~~~s 338 (482)
T 1xzp_A 320 EIEKADIVLFVLDASSPLD 338 (482)
T ss_dssp HHHHCSEEEEEEETTSCCC
T ss_pred HhhcccEEEEEecCCCCCC
Confidence 7899999999999998753
No 142
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.38 E-value=7.6e-13 Score=99.47 Aligned_cols=87 Identities=26% Similarity=0.473 Sum_probs=56.3
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC-------CCceeeeeEEEEEEECCeEEEEEEEeCCCccc-------c
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC-------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER-------F 148 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~-------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~-------~ 148 (173)
...++|+++|.+|+|||||++++++.. +...+ .+|++.+.....+..++..+.+.+|||||... +
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 457999999999999999999977654 44444 56777666555555566668999999999732 3
Q ss_pred ccch-------hhhhcC-------------CCEEEEEEeCCC
Q psy13826 149 RAVT-------RSYYRG-------------AAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~-------~~~~~~-------------~~~~ilv~d~t~ 170 (173)
..+. ..|++. +|+++++++.++
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~ 127 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCC
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCC
Confidence 3332 333433 779999987665
No 143
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.36 E-value=6.6e-13 Score=95.40 Aligned_cols=86 Identities=21% Similarity=0.285 Sum_probs=53.5
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc----------cccchh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----------FRAVTR 153 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----------~~~~~~ 153 (173)
....+++++|++|||||||++++++..+...+.++.|.......+.+++ .+.+||++|... +.....
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 3457999999999999999999998876666667777655444444443 467999999742 222233
Q ss_pred hhh---cCCCEEEEEEeCCCCC
Q psy13826 154 SYY---RGAAGALMVIDVSHVK 172 (173)
Q Consensus 154 ~~~---~~~~~~ilv~d~t~~~ 172 (173)
.++ +.++++++++|++++.
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~ 122 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPL 122 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCC
T ss_pred HHHHhhhcccEEEEEEECCCCC
Confidence 344 5789999999998754
No 144
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.36 E-value=1.9e-12 Score=103.33 Aligned_cols=88 Identities=19% Similarity=0.276 Sum_probs=61.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC--CCCC----------CCCce-------------------eeeeEEEEEEECC
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMPD----------CPHTI-------------------GVEFGTRIIEVHG 132 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~~----------~~~t~-------------------~~~~~~~~~~~~~ 132 (173)
...+||+++|..++|||||+++|+++. +... ..++. |.+.......+..
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 456899999999999999999998764 1111 11221 1111111222333
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
....+.||||||+++|...+..+++.+|++|+|+|+++.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g 140 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYG 140 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTC
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCC
Confidence 445789999999999988888889999999999999875
No 145
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.35 E-value=2.1e-12 Score=97.81 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=28.8
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM 112 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~ 112 (173)
+.......++|+++|++|||||||++++++..+.
T Consensus 19 ~~~~~~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 19 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCTTCCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCCCCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 3344556789999999999999999999998874
No 146
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.35 E-value=5.2e-13 Score=107.17 Aligned_cols=85 Identities=27% Similarity=0.289 Sum_probs=53.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC--CCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccch--------hh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF--MPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVT--------RS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~--------~~ 154 (173)
..+||+++|++|||||||++++++.++ ..... +...++....+.+++. .+.+|||+|...+.... ..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~-gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~ 299 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLP-GTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQ 299 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCT-TCCHHHHHHEEEETTE--EEEECC--------------------C
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCC-CeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhh
Confidence 468999999999999999999998754 33333 3333333334456664 56899999986654332 23
Q ss_pred hhcCCCEEEEEEeCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~ 172 (173)
+++.+|++|+|||.+++.
T Consensus 300 ~~~~aD~vl~VvD~s~~~ 317 (462)
T 3geh_A 300 AANTADLVLLTIDAATGW 317 (462)
T ss_dssp CCCSCSEEEEEEETTTCS
T ss_pred hhhcCCEEEEEeccCCCC
Confidence 678899999999999864
No 147
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.34 E-value=1.1e-11 Score=98.09 Aligned_cols=87 Identities=16% Similarity=0.108 Sum_probs=63.0
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEE-------------------EE---CCeEEEEEE
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRII-------------------EV---HGEKIKLQI 139 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~-------------------~~---~~~~~~l~i 139 (173)
.....++|+++|++++|||||++++++...... .+........ .. ......+.+
T Consensus 4 ~~~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (403)
T 3sjy_A 4 KVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKK----LGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISF 79 (403)
T ss_dssp CCCCCCEEEEECSTTSSHHHHHHHHHSCCCCSS----SEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEE
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhCcccccc----cCccccceeeccccccccceecccccccccccccccccceEEE
Confidence 345678999999999999999999998543221 1110000000 00 112368999
Q ss_pred EeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
|||||++.|......+++.+|++|+|+|+++..
T Consensus 80 iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~ 112 (403)
T 3sjy_A 80 IDAPGHEVLMATMLSGAALMDGAILVVAANEPF 112 (403)
T ss_dssp EECCCCGGGHHHHHHHHTTCSEEEEEEETTSCS
T ss_pred EECCCcHHHHHHHHHHHhhCCEEEEEEECCCCC
Confidence 999999999988889999999999999999853
No 148
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.33 E-value=2.8e-14 Score=116.12 Aligned_cols=86 Identities=17% Similarity=0.226 Sum_probs=67.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
...+|+++|++++|||||+++|.+..+.....+++..++....+..++ ...+.||||||++.|..++..+++.+|++|+
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vIL 81 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVIL 81 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEEE
Confidence 357899999999999999999998776555555554444333333321 2268899999999999999999999999999
Q ss_pred EEeCCCC
Q psy13826 165 VIDVSHV 171 (173)
Q Consensus 165 v~d~t~~ 171 (173)
|||+++.
T Consensus 82 VVDa~dg 88 (537)
T 3izy_P 82 VVAADDG 88 (537)
T ss_dssp ECBSSSC
T ss_pred EEECCCC
Confidence 9999874
No 149
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=1.1e-12 Score=102.01 Aligned_cols=83 Identities=23% Similarity=0.270 Sum_probs=56.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCC-CCC-CceeeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMP-DCP-HTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFR 149 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~-~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~ 149 (173)
++|+++|.+|||||||++++++..+.. +++ .|+..+.. .+.+.+. ...+++||++|+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g--~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTG--VVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSS--EEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEE--EEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 689999999999999999999877432 222 13333222 2334432 1578999999987653
Q ss_pred ----cchh---hhhcCCCEEEEEEeCCCC
Q psy13826 150 ----AVTR---SYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 150 ----~~~~---~~~~~~~~~ilv~d~t~~ 171 (173)
.+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~~ 109 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFEN 109 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSCC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCCC
Confidence 2332 357999999999999874
No 150
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=1.1e-12 Score=102.44 Aligned_cols=87 Identities=25% Similarity=0.470 Sum_probs=51.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC-CCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCc-------cc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK-FMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------ER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~-~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~-------~~ 147 (173)
...++|+++|++|+|||||++++++.. +...+ .+|++.......+..++..+.+.+|||+|+ +.
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 456899999999999999999976643 33332 256665554444455677789999999999 77
Q ss_pred cccchh-------hhhcCCCEE-----------EEEEeCCC
Q psy13826 148 FRAVTR-------SYYRGAAGA-----------LMVIDVSH 170 (173)
Q Consensus 148 ~~~~~~-------~~~~~~~~~-----------ilv~d~t~ 170 (173)
+..++. .|++.++++ +++|++++
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~ 155 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP 155 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence 777776 677655443 47777765
No 151
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.33 E-value=3.2e-12 Score=103.24 Aligned_cols=86 Identities=19% Similarity=0.213 Sum_probs=61.1
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCC-------CCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhh
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-------FMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSY 155 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~ 155 (173)
....++|+++|..++|||||++++.+.. +..+..+.+..+.....+.+++ ..+.+|||||+++|......+
T Consensus 16 ~m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 16 DFKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp CCEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHH
Confidence 3457999999999999999999999876 2222222222222222233444 578999999999998888889
Q ss_pred hcCCCEEEEEEeCCC
Q psy13826 156 YRGAAGALMVIDVSH 170 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~ 170 (173)
++.+|++|+|+|+++
T Consensus 94 ~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 94 ADIIDLALIVVDAKE 108 (482)
T ss_dssp TTSCCEEEEEEETTT
T ss_pred HhhCCEEEEEEecCC
Confidence 999999999999987
No 152
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.32 E-value=1.3e-12 Score=102.66 Aligned_cols=88 Identities=18% Similarity=0.118 Sum_probs=50.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCe---------------EEEEEEEeCCCccccc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE---------------KIKLQIWDTAGQERFR 149 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~l~i~D~~g~~~~~ 149 (173)
..+++.++|.+|||||||++++.+..+.....|....+.....+.+.+. ...+++||++|..+..
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 3578999999999999999999988653333332222233334444432 2358999999987654
Q ss_pred c-------chhhhhcCCCEEEEEEeCCCCC
Q psy13826 150 A-------VTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 150 ~-------~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
. ....+++.+|++++|+|+++.+
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~ 130 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDD 130 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC----
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCc
Confidence 3 3456789999999999998754
No 153
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.32 E-value=1.1e-12 Score=103.87 Aligned_cols=88 Identities=17% Similarity=0.149 Sum_probs=65.1
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC--------CCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ--------KFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~--------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
...++|+++|.+++|||||++++++. .+... ...+.|.++......++.....+.+|||||+++|
T Consensus 9 ~~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f 88 (405)
T 2c78_A 9 KPHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADY 88 (405)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGG
T ss_pred CCeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHH
Confidence 34689999999999999999999873 22110 0012333333333444444567899999999999
Q ss_pred ccchhhhhcCCCEEEEEEeCCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
......+++.+|++|+|+|+++.
T Consensus 89 ~~~~~~~~~~aD~~ilVvda~~g 111 (405)
T 2c78_A 89 IKNMITGAAQMDGAILVVSAADG 111 (405)
T ss_dssp HHHHHHHHTTCSSEEEEEETTTC
T ss_pred HHHHHHHHHHCCEEEEEEECCCC
Confidence 88888899999999999999875
No 154
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.31 E-value=1e-11 Score=98.32 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhC---CCCCCCCC--ceeeeeEEEEEEE-------------C--C----eEEEEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQ---KFMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKLQI 139 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~---~~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~i 139 (173)
...++|+++|..++|||||++++.+. .+..+..+ |+...+....+.. + + ....+.+
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i 85 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSF 85 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEE
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEE
Confidence 35689999999999999999999854 33334444 5554443333321 1 1 1368999
Q ss_pred EeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|||||++.|.......+..+|++|+|+|+++.
T Consensus 86 iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 117 (408)
T 1s0u_A 86 VDSPGHETLMATMLSGASLMDGAILVIAANEP 117 (408)
T ss_dssp EECSSHHHHHHHHHTTCSCCSEEEEEEETTSC
T ss_pred EECCCHHHHHHHHHHhHhhCCEEEEEEECCCC
Confidence 99999999887666677788999999999864
No 155
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.31 E-value=1.1e-12 Score=104.04 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=58.3
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc-------hh
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV-------TR 153 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~-------~~ 153 (173)
.....++|+++|+.|+|||||++++++..+. ....+....+.....+.+.+.. .+.+|||+|++.+..+ ..
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHH
Confidence 4456789999999999999999999988763 2222222233334455555442 7889999999887654 34
Q ss_pred hhhcCCCEEEEEEeCC
Q psy13826 154 SYYRGAAGALMVIDVS 169 (173)
Q Consensus 154 ~~~~~~~~~ilv~d~t 169 (173)
.+++.+|++|+|||++
T Consensus 109 ~~l~~aD~vllVvD~~ 124 (423)
T 3qq5_A 109 RVFYRADCGILVTDSA 124 (423)
T ss_dssp HHHTSCSEEEEECSSS
T ss_pred HHHhcCCEEEEEEeCC
Confidence 5889999999999983
No 156
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.30 E-value=2.2e-12 Score=105.21 Aligned_cols=87 Identities=20% Similarity=0.250 Sum_probs=60.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CCC------------------CCCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FMP------------------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~~------------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
...+|+++|.+|+|||||+++++... +.. ....+.|.++......+......+.||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 46899999999999999999999632 100 0011223322222223333456789999999
Q ss_pred ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 145 QERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+++|......+++.+|++|+|+|.++.
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g 118 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKG 118 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCcc
Confidence 999988888899999999999999874
No 157
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.29 E-value=1.3e-12 Score=104.33 Aligned_cols=86 Identities=20% Similarity=0.262 Sum_probs=60.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhC--CCCCCC---------------------------CCceeeeeEEEEEEECCeEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPDC---------------------------PHTIGVEFGTRIIEVHGEKI 135 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~~---------------------------~~t~~~~~~~~~~~~~~~~~ 135 (173)
..++|+++|..++|||||+++|+.. .+.... ....|.+.......++....
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~ 84 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY 84 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence 4689999999999999999999875 332110 00011222222223444456
Q ss_pred EEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 136 KLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 136 ~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.+.||||||+++|......+++.+|++|+|||+++
T Consensus 85 ~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 85 FFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp EEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST
T ss_pred EEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC
Confidence 79999999999999888889999999999999987
No 158
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.29 E-value=2.1e-12 Score=101.88 Aligned_cols=86 Identities=16% Similarity=0.167 Sum_probs=62.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhC-------CCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccc
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQ-------KFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAV 151 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~-------~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~ 151 (173)
.+||+++|..++|||||++++++. .+... .....|.+.......+......+.||||||+++|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 589999999999999999999874 11110 0011223332233344444567889999999999887
Q ss_pred hhhhhcCCCEEEEEEeCCCC
Q psy13826 152 TRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 152 ~~~~~~~~~~~ilv~d~t~~ 171 (173)
...+++.+|++|+|+|+++.
T Consensus 83 ~~~~~~~aD~~ilVvda~~g 102 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDG 102 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTC
T ss_pred HHhhHhhCCEEEEEEECCCC
Confidence 88889999999999999874
No 159
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.29 E-value=8.4e-13 Score=109.31 Aligned_cols=87 Identities=17% Similarity=0.245 Sum_probs=62.8
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC-----------------------------CceeeeeEEEEEEECCeE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----------------------------HTIGVEFGTRIIEVHGEK 134 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-----------------------------~t~~~~~~~~~~~~~~~~ 134 (173)
...+||+++|.+++|||||+++|++........ ...|.++......+....
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 357899999999999999999999763221110 001222222222233344
Q ss_pred EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
..+.||||||+++|......+++.+|++|+|+|+++
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~ 280 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCST 280 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCC
Confidence 578999999999998888889999999999999986
No 160
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.29 E-value=4e-12 Score=104.84 Aligned_cols=88 Identities=23% Similarity=0.342 Sum_probs=57.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC--CC---------CC--CCCceeeeeEEEEEEE-----CCeEEEEEEEeCCCcc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK--FM---------PD--CPHTIGVEFGTRIIEV-----HGEKIKLQIWDTAGQE 146 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~--~~---------~~--~~~t~~~~~~~~~~~~-----~~~~~~l~i~D~~g~~ 146 (173)
...+|+++|+.++|||||+++++... +. +. ...+.|.++......+ ++..+.+.+|||||++
T Consensus 3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~ 82 (599)
T 3cb4_D 3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV 82 (599)
T ss_dssp TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence 35799999999999999999998632 11 00 1112344443322222 4567899999999999
Q ss_pred ccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 147 ~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+|...+..+++.+|++|+|+|+++..
T Consensus 83 dF~~ev~~~l~~aD~aILVVDa~~gv 108 (599)
T 3cb4_D 83 DFSYEVSRSLAACEGALLVVDAGQGV 108 (599)
T ss_dssp GGHHHHHHHHHHCSEEEEEEETTTCC
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCC
Confidence 99988889999999999999998753
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.28 E-value=1.6e-11 Score=97.30 Aligned_cols=89 Identities=19% Similarity=0.203 Sum_probs=64.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCC---CCCCCCC--ceeeeeEEEEEEE-------------C--C----eEEEEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK---FMPDCPH--TIGVEFGTRIIEV-------------H--G----EKIKLQ 138 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~---~~~~~~~--t~~~~~~~~~~~~-------------~--~----~~~~l~ 138 (173)
....++|+++|..++|||||++++.+.. +..+..+ |+...+....+.. . + ....+.
T Consensus 7 ~~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ 86 (410)
T 1kk1_A 7 RQAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVS 86 (410)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEE
Confidence 4567999999999999999999998542 3333333 5544443333221 0 1 136899
Q ss_pred EEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 139 i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+|||||++.|.......+..+|++|+|+|+++.
T Consensus 87 iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g 119 (410)
T 1kk1_A 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANEP 119 (410)
T ss_dssp EEECSSHHHHHHHHHHCGGGCSEEEEEEETTSC
T ss_pred EEECCChHHHHHHHHhhhhhCCEEEEEEECCCC
Confidence 999999999877666677789999999999864
No 162
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.28 E-value=1.1e-11 Score=96.79 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=54.8
Q ss_pred eeE-EEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc---------ccccchhhh
Q psy13826 86 IFK-YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE---------RFRAVTRSY 155 (173)
Q Consensus 86 ~~k-i~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~---------~~~~~~~~~ 155 (173)
.++ |+++|.+|||||||++++++..+.....+....+.....+.+++. .+.+|||+|.- .|...++ .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~--~v~l~DT~G~i~~lp~~lve~f~~tl~-~ 254 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR--KIMLVDTVGFIRGIPPQIVDAFFVTLS-E 254 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE--EEEEEECCCBCSSCCGGGHHHHHHHHH-G
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE--EEEEEeCCCchhcCCHHHHHHHHHHHH-H
Confidence 455 999999999999999999988753322222222334456667774 57899999962 2222222 4
Q ss_pred hcCCCEEEEEEeCCCCC
Q psy13826 156 YRGAAGALMVIDVSHVK 172 (173)
Q Consensus 156 ~~~~~~~ilv~d~t~~~ 172 (173)
++.+|++++|+|++++.
T Consensus 255 ~~~aD~il~VvD~s~~~ 271 (364)
T 2qtf_A 255 AKYSDALILVIDSTFSE 271 (364)
T ss_dssp GGGSSEEEEEEETTSCH
T ss_pred HHhCCEEEEEEECCCCc
Confidence 78899999999998763
No 163
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.27 E-value=1e-11 Score=106.21 Aligned_cols=89 Identities=21% Similarity=0.288 Sum_probs=64.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC------------CCC----CCC--CceeeeeEEEEEE------------ECCe
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK------------FMP----DCP--HTIGVEFGTRIIE------------VHGE 133 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~------------~~~----~~~--~t~~~~~~~~~~~------------~~~~ 133 (173)
....||+++|+.++|||||+++++... +.+ +.. .|+........+. .++.
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 456899999999999999999998641 111 011 1332222222222 2345
Q ss_pred EEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 134 KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 134 ~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
.+.+.||||+|+.+|...+..+++.+|++|+|||+++..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~ 135 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGV 135 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC
Confidence 789999999999999999999999999999999998753
No 164
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.27 E-value=1.5e-11 Score=93.84 Aligned_cols=29 Identities=21% Similarity=0.401 Sum_probs=26.0
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKF 111 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~ 111 (173)
.....+|+++|++|||||||++++++..+
T Consensus 21 ~~~~~~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 21 PLDLPQIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp TTCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence 44567999999999999999999999876
No 165
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.27 E-value=1.3e-11 Score=97.40 Aligned_cols=85 Identities=22% Similarity=0.289 Sum_probs=48.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-----CceeeeeEEEE---------------EEECC-eEEEEEEEeCCC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-----HTIGVEFGTRI---------------IEVHG-EKIKLQIWDTAG 144 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-----~t~~~~~~~~~---------------~~~~~-~~~~l~i~D~~g 144 (173)
+||+++|.+|||||||++++++.... ..++ ++.+..+.... ..+++ +.+.+++|||||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG 80 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAG 80 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCC
Confidence 58999999999999999999987632 1221 22332111000 01222 257899999999
Q ss_pred ccc----cccchh---hhhcCCCEEEEEEeCCCC
Q psy13826 145 QER----FRAVTR---SYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 145 ~~~----~~~~~~---~~~~~~~~~ilv~d~t~~ 171 (173)
... ...+.. .+++.+|++++|+|+++.
T Consensus 81 ~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 81 LVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp --------------CCCSSTTCSEEEEEEETTCC
T ss_pred cccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 854 223333 346899999999999874
No 166
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.26 E-value=9.4e-13 Score=107.30 Aligned_cols=87 Identities=22% Similarity=0.255 Sum_probs=61.3
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC-----------------CCCCC---CceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-----------------MPDCP---HTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~-----------------~~~~~---~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
...+|+++|.+|+|||||+++++...- ..++. ...|.++......+....+.+.||||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG 91 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG 91 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence 467999999999999999999972110 00000 0012222222222333456789999999
Q ss_pred ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 145 QERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+++|......+++.+|++|+|+|.++.
T Consensus 92 ~~df~~~~~~~l~~aD~allVvDa~~g 118 (528)
T 3tr5_A 92 HADFTEDTYRTLTAVDSALMVIDAAKG 118 (528)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTC
T ss_pred chhHHHHHHHHHHhCCEEEEEEeCCCC
Confidence 999999899999999999999999875
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.26 E-value=5.5e-13 Score=107.74 Aligned_cols=84 Identities=18% Similarity=0.231 Sum_probs=63.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 164 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~il 164 (173)
...+|+++|+.++|||||++++.+..+.....+.+..+.....+..++ ..+.+|||||++.|..++..+++.+|++|+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aIL 80 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVVL 80 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEEE
Confidence 457899999999999999999997655433332222222121222333 357899999999999998889999999999
Q ss_pred EEeCCC
Q psy13826 165 VIDVSH 170 (173)
Q Consensus 165 v~d~t~ 170 (173)
|||+++
T Consensus 81 VVda~~ 86 (501)
T 1zo1_I 81 VVAADD 86 (501)
T ss_dssp EEETTT
T ss_pred Eeeccc
Confidence 999987
No 168
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.25 E-value=9.5e-12 Score=95.96 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=35.2
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
+.+.+++||++||++++.+|..||++++++|+|||++
T Consensus 159 ~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS 195 (340)
T 4fid_A 159 KDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLA 195 (340)
T ss_dssp SSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGG
T ss_pred eeeeeccccCCCcccccccHHHHhccCCEEEEEEECC
Confidence 4578999999999999999999999999999999998
No 169
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.25 E-value=7.5e-12 Score=105.00 Aligned_cols=88 Identities=19% Similarity=0.192 Sum_probs=62.0
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHhCC--CC------C------------CCCCceeeeeEEEEEEECCeEEEEEEE
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQK--FM------P------------DCPHTIGVEFGTRIIEVHGEKIKLQIW 140 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~~~--~~------~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~ 140 (173)
.......+|+++|.+|+|||||+++++... +. . ....|+... ...+.. ..+.+.+|
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~--~~~~~~--~~~~i~li 82 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA--VTTCFW--KDHRINII 82 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CC--EEEEEE--TTEEEEEE
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc--eEEEEE--CCeEEEEE
Confidence 334567899999999999999999998421 10 0 111222221 112222 34678999
Q ss_pred eCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
||+|+.+|...+..+++.+|++|+|+|.++..
T Consensus 83 DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~ 114 (691)
T 1dar_A 83 DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV 114 (691)
T ss_dssp CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS
T ss_pred ECcCccchHHHHHHHHHHCCEEEEEEECCCCc
Confidence 99999999888899999999999999998754
No 170
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.25 E-value=5.3e-12 Score=96.16 Aligned_cols=82 Identities=21% Similarity=0.134 Sum_probs=56.6
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCCCCC--CCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc-c--------cccchhh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMP--DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE-R--------FRAVTRS 154 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~-~--------~~~~~~~ 154 (173)
..+|+++|++|||||||++++++..+.. ....+... .....+.. ....+.+|||+|.. . +......
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~-~~~gi~~~--~~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRH-RIVGIHTE--GAYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSS-CEEEEEEE--TTEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccCCCCCccee-eEEEEEEE--CCeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 4589999999999999999999987531 11212211 11112222 24578899999987 2 3344456
Q ss_pred hhcCCCEEEEEEeCCC
Q psy13826 155 YYRGAAGALMVIDVSH 170 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~ 170 (173)
+++.+|++++|+|.++
T Consensus 85 ~l~~~D~vl~Vvd~~~ 100 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR 100 (301)
T ss_dssp CCCCEEEEEEEEETTC
T ss_pred HHhcCCEEEEEEeCCC
Confidence 7889999999999875
No 171
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.23 E-value=4.6e-12 Score=104.47 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=62.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCC----CCCceeeeeEEEEE------------EECCeEEEEEEEeCCCcccc
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPD----CPHTIGVEFGTRII------------EVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~----~~~t~~~~~~~~~~------------~~~~~~~~l~i~D~~g~~~~ 148 (173)
..++|+++|++++|||||++++.+..+... ..++++..+..... .++.....+.+|||||++.|
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 357999999999999999999997654332 12244432211000 00011125899999999999
Q ss_pred ccchhhhhcCCCEEEEEEeCCC
Q psy13826 149 RAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 149 ~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
..++..+++.+|++|+|||+++
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINE 105 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTT
T ss_pred HHHHHHHHhhCCEEEEEEECCC
Confidence 9999989999999999999998
No 172
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.22 E-value=4.2e-12 Score=101.94 Aligned_cols=82 Identities=17% Similarity=0.195 Sum_probs=61.2
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhC--CCCCC-------------------------------CCCceeeeeEEEEEEEC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQ--KFMPD-------------------------------CPHTIGVEFGTRIIEVH 131 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~ 131 (173)
..++|+++|.+++|||||+++|++. .+... .-.|+...+ ..++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~----~~~~ 81 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL----WKFE 81 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC----EEEE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE----EEEe
Confidence 4689999999999999999999864 22110 111222222 1233
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.....+.||||||+++|......+++.+|++|+|+|+++
T Consensus 82 ~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~ 120 (458)
T 1f60_A 82 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGV 120 (458)
T ss_dssp CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSH
T ss_pred cCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCc
Confidence 344679999999999998888888999999999999985
No 173
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.21 E-value=1.9e-11 Score=98.39 Aligned_cols=84 Identities=17% Similarity=0.153 Sum_probs=49.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHh--CCCCC-------------------------------CCCCceeeeeEEEEEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-------------------------------DCPHTIGVEFGTRIIEV 130 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~ 130 (173)
...++|+++|..++|||||+++|+. +.+.. +.-.|+...+ ..+..
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~--~~~~~ 118 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR--AYFET 118 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C--CEEEC
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee--EEEec
Confidence 3568999999999999999999975 22210 0111222111 12223
Q ss_pred CCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 131 HGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 131 ~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+ ...+.||||||+++|......+++.+|++|+|+|+++.
T Consensus 119 ~--~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g 157 (467)
T 1r5b_A 119 E--HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRG 157 (467)
T ss_dssp S--SEEEEECCCCC-----------TTSCSEEEEEEECSTT
T ss_pred C--CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcC
Confidence 3 35789999999999988888889999999999999874
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.21 E-value=5.2e-11 Score=98.17 Aligned_cols=89 Identities=24% Similarity=0.325 Sum_probs=60.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC--CCC-----CC------CCceeeeeEEE--EEEE---CCeEEEEEEEeCCCc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----DC------PHTIGVEFGTR--IIEV---HGEKIKLQIWDTAGQ 145 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~-----~~------~~t~~~~~~~~--~~~~---~~~~~~l~i~D~~g~ 145 (173)
....+++++|..++|||||+++++... +.. .. ....|.++... .+.+ ++..+.+.+|||||+
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 346799999999999999999998631 111 00 01122222111 1112 456789999999999
Q ss_pred cccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 146 ~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
++|...+..+++.+|++|+|+|+++..
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv 110 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGI 110 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBC
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCc
Confidence 999988888999999999999998753
No 175
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.21 E-value=1.2e-11 Score=107.47 Aligned_cols=90 Identities=16% Similarity=0.126 Sum_probs=63.0
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhC-------CCCC-------CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ-------KFMP-------DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~-------~~~~-------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
.....++|+++|+.++|||||++++++. .+.. ....+.|.++....+.++.....+.||||||+++
T Consensus 292 ~~k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHed 371 (1289)
T 3avx_A 292 RTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHAD 371 (1289)
T ss_dssp CCCCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHH
T ss_pred ccCCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHH
Confidence 3445799999999999999999999874 1110 1122344444333334445556789999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|......+++.+|++|+|+|+++.
T Consensus 372 F~~~mi~gas~AD~aILVVDAtdG 395 (1289)
T 3avx_A 372 YVKNMITGAAQMDGAILVVAATDG 395 (1289)
T ss_dssp HHHHHHHTSCCCSEEEEEEETTTC
T ss_pred HHHHHHHHHhhCCEEEEEEcCCcc
Confidence 988888889999999999999875
No 176
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.21 E-value=3.8e-11 Score=92.26 Aligned_cols=37 Identities=14% Similarity=0.290 Sum_probs=34.6
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
+.+.+++||++||++++.+|..||++++++|+|||++
T Consensus 165 ~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls 201 (327)
T 3ohm_A 165 QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALS 201 (327)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGG
T ss_pred eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECc
Confidence 3478999999999999999999999999999999887
No 177
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.20 E-value=1.3e-11 Score=96.54 Aligned_cols=70 Identities=13% Similarity=0.096 Sum_probs=54.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEe
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVID 167 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d 167 (173)
+|+++|.+++|||||+++++ +...|+...+ ..+......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~------~~giTi~~~~----~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG------KKGTSSDITM----YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS------EEEEESSSEE----EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHH------hCCEEEEeeE----EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999999999998 1112222222 2233334468999999999998777778899999999999
No 178
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.20 E-value=4.4e-11 Score=93.12 Aligned_cols=85 Identities=25% Similarity=0.145 Sum_probs=57.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC--CceeeeeEEEEEEECCeEEEEEEEeCCCccccc---------cch
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP--HTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR---------AVT 152 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~---------~~~ 152 (173)
...++++++|.+|||||||++++++..+..... .|... ....+... ...+.+|||+|..... ...
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~~~~~~~~~~~t~~~--~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 240 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGI--NVGQFEDG--YFRYQIIDTPGLLDRPISERNEIEKQAI 240 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSSCCEEECCTTCSSCE--EEEEEEET--TEEEEEEECTTTSSSCSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccCCCCCeeece--eEEEEEec--CceEEEEeCCCccccchhhhhHHHHHHH
Confidence 356899999999999999999999876432211 12222 22222223 3568999999985432 111
Q ss_pred hhhhcCCCEEEEEEeCCCCC
Q psy13826 153 RSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 153 ~~~~~~~~~~ilv~d~t~~~ 172 (173)
..+...+|++++|+|++++.
T Consensus 241 ~~~~~~ad~illV~D~s~~~ 260 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHC 260 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTT
T ss_pred HHHHhcCCEEEEEEeCCccc
Confidence 23456799999999998764
No 179
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.19 E-value=6.3e-12 Score=97.32 Aligned_cols=81 Identities=22% Similarity=0.197 Sum_probs=56.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCC-CCCC-CceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhhhcC--
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFM-PDCP-HTIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSYYRG-- 158 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~~~~-- 158 (173)
.+|+++|.+|||||||++++++.... ..+. .|...+ ...+.+++ ...+.+||++|+.. +..+...|++.
T Consensus 159 a~V~lvG~~nvGKSTLln~L~~~~~~i~~~~ftTl~p~--~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPN--LGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSEEECCEESSTTSSCCCCC--EEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CeeeeeCCCCCCHHHHHHHHHcCCCccccCCccccCce--EEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 46889999999999999999987532 2222 232222 22344443 13688999999643 44455666554
Q ss_pred -CCEEEEEEeCCC
Q psy13826 159 -AAGALMVIDVSH 170 (173)
Q Consensus 159 -~~~~ilv~d~t~ 170 (173)
++++|+|||+++
T Consensus 236 ~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 236 RTRVIVHVIDMSG 248 (342)
T ss_dssp HCCEEEEEEESSC
T ss_pred hccEEEEEEECCc
Confidence 999999999998
No 180
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.16 E-value=3.6e-11 Score=100.53 Aligned_cols=88 Identities=16% Similarity=0.165 Sum_probs=64.2
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCC----------------ceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH----------------TIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~----------------t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
....+++++|+.|+|||||++++++......... ..+.++......+....+.+++|||+|+++
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 3467899999999999999999995433211111 112233333333444457889999999999
Q ss_pred cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 148 FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 148 ~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
|......+++.+|++++|+|.++.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcc
Confidence 988888999999999999998764
No 181
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.16 E-value=4.5e-12 Score=104.62 Aligned_cols=86 Identities=20% Similarity=0.237 Sum_probs=46.7
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCC--C-----------------------------CCCCCCceeeeeEEEEEEEC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQK--F-----------------------------MPDCPHTIGVEFGTRIIEVH 131 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~--~-----------------------------~~~~~~t~~~~~~~~~~~~~ 131 (173)
....++|+++|.+++|||||+++|+... + ..+.. .|.+.......+.
T Consensus 174 ~k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~--~GiTid~~~~~~~ 251 (592)
T 3mca_A 174 PKPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERA--RGVTMDVASTTFE 251 (592)
T ss_dssp CCCEEEEEEECCSSSTHHHHHHHHHHHHHCC-------------------------------------------------
T ss_pred CCCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhc--CCeeEEeeEEEEE
Confidence 3457899999999999999999996421 0 00111 1222222222333
Q ss_pred CeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 132 GEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 132 ~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.....+.||||||+++|......+++.+|++|+|+|+++
T Consensus 252 ~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 252 SDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp -------CCEEESSSEEEEECCC-------CCSEEEEEE
T ss_pred eCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 345678999999999998888888999999999999985
No 182
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.15 E-value=8.5e-11 Score=91.52 Aligned_cols=87 Identities=16% Similarity=0.316 Sum_probs=58.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCcee---eee--------------------------------------
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIG---VEF-------------------------------------- 123 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~---~~~-------------------------------------- 123 (173)
...+|+++|++|||||||++++++..+......++. ...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 345999999999999999999999887433222110 000
Q ss_pred -----------EEEEEEE-CCeEEEEEEEeCCCcccc-------------ccchhhhhcCCCEEEEEEeCCCC
Q psy13826 124 -----------GTRIIEV-HGEKIKLQIWDTAGQERF-------------RAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 124 -----------~~~~~~~-~~~~~~l~i~D~~g~~~~-------------~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
....+.+ ......+.+|||||..++ ..+...|++.+|++|+|+|.++.
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~ 185 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQ 185 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTS
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccC
Confidence 0000111 111235889999998776 45667899999999999987653
No 183
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.14 E-value=1.2e-10 Score=97.99 Aligned_cols=88 Identities=18% Similarity=0.110 Sum_probs=62.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCC--CCC-----------CCCC---ceeeeeEEE--EEEE-----CCeEEEEEEE
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQK--FMP-----------DCPH---TIGVEFGTR--IIEV-----HGEKIKLQIW 140 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~--~~~-----------~~~~---t~~~~~~~~--~~~~-----~~~~~~l~i~ 140 (173)
....+|+++|..++|||||+++++... +.. ++.+ ..+.+.... .+.. ++..+.+.||
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li 87 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII 87 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence 456899999999999999999997531 111 0000 112222111 1222 2234889999
Q ss_pred eCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
||+|+.+|...+..+++.+|++|+|+|.++.
T Consensus 88 DTPG~~df~~~~~~~l~~aD~aIlVvDa~~g 118 (704)
T 2rdo_7 88 DTPGHVDFTIEVERSMRVLDGAVMVYCAVGG 118 (704)
T ss_pred eCCCccchHHHHHHHHHHCCEEEEEEeCCCC
Confidence 9999999988888999999999999999874
No 184
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.13 E-value=3.4e-11 Score=101.05 Aligned_cols=87 Identities=17% Similarity=0.200 Sum_probs=60.5
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHh--CCCCC-----------CCCC---ceeeeeE--EEEEEECCeEEEEEEEeCCC
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTE--QKFMP-----------DCPH---TIGVEFG--TRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~--~~~~~-----------~~~~---t~~~~~~--~~~~~~~~~~~~l~i~D~~g 144 (173)
.....+|+++|.+|+|||||+++++. +.+.. ++.+ ..+.+.. ...+..+ ...+.+|||+|
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~--~~~i~liDTPG 84 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWE--GHRVNIIDTPG 84 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEET--TEEEEEECCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEEC--CeeEEEEECcC
Confidence 34578999999999999999999995 22211 0000 0111111 1122233 46789999999
Q ss_pred ccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 145 QERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+.+|......+++.+|++|+|+|.++.
T Consensus 85 ~~df~~~~~~~l~~aD~~llVvDa~~g 111 (693)
T 2xex_A 85 HVDFTVEVERSLRVLDGAVTVLDAQSG 111 (693)
T ss_dssp CSSCCHHHHHHHHHCSEEEEEEETTTB
T ss_pred CcchHHHHHHHHHHCCEEEEEECCCCC
Confidence 999988888899999999999999874
No 185
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.12 E-value=5.3e-11 Score=92.50 Aligned_cols=34 Identities=26% Similarity=0.488 Sum_probs=28.1
Q ss_pred CCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCC
Q psy13826 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM 112 (173)
Q Consensus 79 ~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~ 112 (173)
+........+|+++|++|||||||++++++..+.
T Consensus 24 g~~~~~~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 24 GQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp TCGGGCCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCCCCCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3333445689999999999999999999998874
No 186
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.12 E-value=8.7e-11 Score=96.21 Aligned_cols=87 Identities=17% Similarity=0.189 Sum_probs=59.8
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHHhCCCC---CCCCCceeeeeEEEEEEECC--------------------------
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFM---PDCPHTIGVEFGTRIIEVHG-------------------------- 132 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~---~~~~~t~~~~~~~~~~~~~~-------------------------- 132 (173)
......+|+++|.+|||||||+|++++..+. ....|+.. ... .+..+.
T Consensus 61 ~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~--~~~-~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~ 137 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTD--CFV-AVMHGETEGTVPGNALVVDPEKPFRKLNPFGN 137 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCC--SEE-EEECCSSSEEECCC------------------
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccc--eEE-EEEECCcccccCCceeeecCcccHHHHhhhcc
Confidence 3456789999999999999999999998863 22222221 100 000000
Q ss_pred ----e-E---------EEEEEEeCCCccc-----------cccchhhhhcCCCEEEEEEeCCCC
Q psy13826 133 ----E-K---------IKLQIWDTAGQER-----------FRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 133 ----~-~---------~~l~i~D~~g~~~-----------~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+ . ..+.+|||+|... |......++..+|++|+|+|.++.
T Consensus 138 ~~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~ 201 (550)
T 2qpt_A 138 TFLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKL 201 (550)
T ss_dssp CCCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSC
T ss_pred cccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcC
Confidence 0 0 2588999999864 445666788999999999999874
No 187
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=9.5e-11 Score=91.49 Aligned_cols=82 Identities=22% Similarity=0.271 Sum_probs=55.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCC-CCCCCC-ceeeeeEEEEEEECC-------------------eEEEEEEEeCCCc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPH-TIGVEFGTRIIEVHG-------------------EKIKLQIWDTAGQ 145 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~-~~~~~~-t~~~~~~~~~~~~~~-------------------~~~~l~i~D~~g~ 145 (173)
++++++|.+|||||||++++.+... ..+++. |+..+... ..+.+ ....+++||+||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~--~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALAANYPFATIDKNVGV--VPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEE--EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeccceee--EecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 5899999999999999999997652 122221 22222211 12221 2356899999998
Q ss_pred cccc----cchh---hhhcCCCEEEEEEeCCC
Q psy13826 146 ERFR----AVTR---SYYRGAAGALMVIDVSH 170 (173)
Q Consensus 146 ~~~~----~~~~---~~~~~~~~~ilv~d~t~ 170 (173)
.++. .+.. .+++.+|++++|+|+++
T Consensus 80 ~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 7652 2333 35799999999999986
No 188
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.11 E-value=3.4e-11 Score=87.55 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
++...|||++||++|||||||+.||+.+.|...+.+|++..+.
T Consensus 9 ~P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~ 51 (216)
T 4dkx_A 9 NPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFL 51 (216)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHSCCC----------CE
T ss_pred CCCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEE
Confidence 4556789999999999999999999999999999999875443
No 189
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.09 E-value=1.5e-10 Score=97.19 Aligned_cols=88 Identities=24% Similarity=0.386 Sum_probs=58.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceee--------eeEEEE----------------------------
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGV--------EFGTRI---------------------------- 127 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~--------~~~~~~---------------------------- 127 (173)
..++|+++|++|+|||||+|++++..+.. ...|+... +.....
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 46899999999999999999999887432 22332210 000000
Q ss_pred -----------------EEECCeE--EEEEEEeCCCcccc---ccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 128 -----------------IEVHGEK--IKLQIWDTAGQERF---RAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 128 -----------------~~~~~~~--~~l~i~D~~g~~~~---~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+...... ..+.||||||.... ......+++.+|++|+|+|.+++.
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~ 214 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC 214 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc
Confidence 0000000 25889999997553 345567889999999999998764
No 190
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.00 E-value=1.3e-10 Score=88.47 Aligned_cols=71 Identities=27% Similarity=0.500 Sum_probs=36.2
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhC-CCCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCc-------c
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-KFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ-------E 146 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~-~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~-------~ 146 (173)
....++|+++|++|||||||++++++. .++... .++.+.......+..++....+.+||++|+ +
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e 94 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 94 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence 345689999999999999999998875 444432 122222221222223445678999999998 6
Q ss_pred ccccchh
Q psy13826 147 RFRAVTR 153 (173)
Q Consensus 147 ~~~~~~~ 153 (173)
.+..+.+
T Consensus 95 ~~~~l~~ 101 (301)
T 2qnr_A 95 CFKTIIS 101 (301)
T ss_dssp -CTTHHH
T ss_pred HHHHHHH
Confidence 6665554
No 191
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.94 E-value=1.4e-09 Score=86.28 Aligned_cols=66 Identities=26% Similarity=0.412 Sum_probs=37.7
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhCCCCCCC--------CCceeeeeEEEEEEECCeEEEEEEEeCCCcccc
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC--------PHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERF 148 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~--------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~ 148 (173)
....++|+++|++|||||||++.+++..+.... .++.+.......+...+....+.+||++|...+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~ 101 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDA 101 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhh
Confidence 445688999999999999999999988763221 223332222222222344467999999998653
No 192
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.93 E-value=2.8e-09 Score=83.78 Aligned_cols=86 Identities=21% Similarity=0.222 Sum_probs=57.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC-CCCCCCceeeeeEEEEEEECCe-------------E--EEEEEEeCCCccc-
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGE-------------K--IKLQIWDTAGQER- 147 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~-------------~--~~l~i~D~~g~~~- 147 (173)
...++.++|++|||||||++.+++... .....|....+.....+.+.+. . ..+.+||++|...
T Consensus 19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 19 NNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp SCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 357899999999999999999999765 3333332222222334445441 1 3578999999543
Q ss_pred ------cccchhhhhcCCCEEEEEEeCCC
Q psy13826 148 ------FRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 148 ------~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
........++.+|+++.|+|..+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 22223446789999999999875
No 193
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.80 E-value=6.9e-09 Score=80.60 Aligned_cols=54 Identities=15% Similarity=0.282 Sum_probs=43.7
Q ss_pred CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 115 CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 115 ~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+.+|+|... ..+.++ .+.+++||++||++++.+|..||++++++|+|||+++.+
T Consensus 177 ~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d 230 (353)
T 1cip_A 177 RVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYD 230 (353)
T ss_dssp CCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred cCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECcccc
Confidence 345666543 334444 578999999999999999999999999999999999853
No 194
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.80 E-value=1.6e-08 Score=79.71 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=41.0
Q ss_pred ceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 118 TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 118 t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
|+|.+. ..+.+++ +.++|||++||++++.+|..||++++++|+|||+++
T Consensus 204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTG
T ss_pred eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcc
Confidence 455443 3344543 789999999999999999999999999999999998
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.79 E-value=8.9e-09 Score=80.48 Aligned_cols=84 Identities=21% Similarity=0.220 Sum_probs=57.1
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCC-CCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccc----cchh---hhh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMP-DCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR----AVTR---SYY 156 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~----~~~~---~~~ 156 (173)
-..+|.++|.||||||||+|++.+..... +++-|. .+.....+.+.+. .+++.||||...-. .+.. ...
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT-~~~~~g~~~~~~~--~i~l~D~pGl~~~a~~~~~~g~~~l~~i 147 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTT-LVTVPGVIRYKGA--KIQMLDLPGIIDGAKDGRGRGKQVIAVA 147 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSC-CCEEEEEEEETTE--EEEEEECGGGCCC-----CHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCCcccCCCCce-eeeeeEEEEeCCc--EEEEEeCCCccCCchhhhHHHHHHHHHH
Confidence 35689999999999999999999865332 233222 2233445566665 46788999963211 1112 246
Q ss_pred cCCCEEEEEEeCCCC
Q psy13826 157 RGAAGALMVIDVSHV 171 (173)
Q Consensus 157 ~~~~~~ilv~d~t~~ 171 (173)
+.||++++|.|.++|
T Consensus 148 ~~ad~il~vvD~~~p 162 (376)
T 4a9a_A 148 RTCNLLFIILDVNKP 162 (376)
T ss_dssp HHCSEEEEEEETTSH
T ss_pred HhcCccccccccCcc
Confidence 789999999999875
No 196
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.68 E-value=1.4e-08 Score=78.83 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=33.5
Q ss_pred eEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCC
Q psy13826 133 EKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVS 169 (173)
Q Consensus 133 ~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t 169 (173)
+.+.++||||+||++|+.+|+.||++++++|+|||++
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis 217 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAIS 217 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGG
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECc
Confidence 6789999999999999999999999999999999998
No 197
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.65 E-value=1.7e-09 Score=82.28 Aligned_cols=66 Identities=14% Similarity=0.067 Sum_probs=55.3
Q ss_pred HHHHHHHhCCCC-CCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 101 CLLHQFTEQKFM-PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 101 sl~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+|+.+|+.+.|. ..+.||+|+.+.. .+..++ .+++||+ +++|..+++.+++++|++|+|||+++++
T Consensus 32 sl~~~~~~~~f~~~~~~pTiGd~~~~-~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~ 98 (301)
T 1u0l_A 32 ERILCKLRGKFRLQNLKIYVGDRVEY-TPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPE 98 (301)
T ss_dssp CEEEEEECGGGTTTTCCCCTTCEEEE-ECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTC
T ss_pred cEEEEEEcccccccCCCCCCccEEEE-EEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCC
Confidence 688888888998 8899999976642 222222 6899999 9999999999999999999999999986
No 198
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.63 E-value=6.3e-08 Score=69.19 Aligned_cols=46 Identities=33% Similarity=0.637 Sum_probs=37.3
Q ss_pred CCCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 7 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 7 ~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+..++..+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus 18 ~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~ 63 (201)
T 2ew1_A 18 GSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDF 63 (201)
T ss_dssp ----CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEE
T ss_pred CCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeE
Confidence 3445678899999999999999999999999999888888876443
No 199
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.63 E-value=5.3e-08 Score=77.12 Aligned_cols=79 Identities=20% Similarity=0.256 Sum_probs=50.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCCC-CCCCC-ceeeeeEEEEEEECCeEEEEEEEeCCCccc----cccchhhh---hcC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKFM-PDCPH-TIGVEFGTRIIEVHGEKIKLQIWDTAGQER----FRAVTRSY---YRG 158 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~~-~~~~~-t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~----~~~~~~~~---~~~ 158 (173)
.++++|++|+|||||++++++.... ..+.. |.. .....+..++ ...+.+||++|... +..+...+ +..
T Consensus 159 ~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~--p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 159 DVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLS--PNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp SEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSC--CEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHHcCCccccCcccceec--ceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 5789999999999999999876421 11211 111 1122333443 24678999999742 22233333 457
Q ss_pred CCEEEEEEeCC
Q psy13826 159 AAGALMVIDVS 169 (173)
Q Consensus 159 ~~~~ilv~d~t 169 (173)
++.++.++|++
T Consensus 236 a~~lL~vvDls 246 (416)
T 1udx_A 236 TRVLLYVLDAA 246 (416)
T ss_dssp SSEEEEEEETT
T ss_pred HHhhhEEeCCc
Confidence 99999999997
No 200
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.60 E-value=1.1e-07 Score=74.16 Aligned_cols=65 Identities=17% Similarity=0.294 Sum_probs=42.1
Q ss_pred HHHHHhCCCCCC-------CCCceeeeeEEEEEEECCeEEEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 103 LHQFTEQKFMPD-------CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 103 ~~~~~~~~~~~~-------~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+.|+....+.+. ..+|+|... ..+.++ .+.+++||++||+.++..|..|+++++++|+|||+++.
T Consensus 166 ~~ri~~~~Y~PT~~Dil~~r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~ 237 (362)
T 1zcb_A 166 LDKLGVPDYIPSQQDILLARRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEF 237 (362)
T ss_dssp HHHHTSTTCCCCHHHHHHCCCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCT
T ss_pred HHHHhcCCCCCChhhhhhccCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccc
Confidence 555555544432 345667554 334444 47899999999999999999999999999999999983
No 201
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.60 E-value=2.6e-08 Score=74.33 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=36.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~ 147 (173)
++++++|.+|||||||+|++.+..... ..++.|.+.....+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASS-VGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccc-cCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 799999999999999999999876532 333444433333333332 578999999753
No 202
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=98.58 E-value=9.7e-08 Score=66.04 Aligned_cols=48 Identities=29% Similarity=0.336 Sum_probs=34.3
Q ss_pred CCCCCCCCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 3 TMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 3 ~~~~~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+|++..+.++...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus 2 ~m~~~~~~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~ 49 (179)
T 2y8e_A 2 TMSSGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGI 49 (179)
T ss_dssp ----------CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSE
T ss_pred ccccccccCCCcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee
Confidence 355555555667799999999999999999999999998888888664
No 203
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.53 E-value=1e-08 Score=74.24 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=32.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeE
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFG 124 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~ 124 (173)
..++|+++|++|||||||+++|+...+...+.++++.++.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~ 76 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI 76 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence 3589999999999999999999988776656667766543
No 204
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.51 E-value=4e-08 Score=80.46 Aligned_cols=86 Identities=20% Similarity=0.228 Sum_probs=58.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhC------------------CCCCC--CCCceeeeeEEEEEEECCeEEEEEEEeCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQ------------------KFMPD--CPHTIGVEFGTRIIEVHGEKIKLQIWDTAG 144 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~------------------~~~~~--~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g 144 (173)
..-+|+|+|..++|||||..+++.. .+.+. .....|+++....+.+..+...++|.||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPG 109 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPG 109 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCC
Confidence 4568999999999999999999621 11110 111223333333333333456788899999
Q ss_pred ccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 145 QERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
+..|..-....++-+|++|+|+|..+
T Consensus 110 HvDF~~Ev~raL~~~DgAvlVvda~~ 135 (548)
T 3vqt_A 110 HQDFSEDTYRVLTAVDSALVVIDAAK 135 (548)
T ss_dssp GGGCSHHHHHHHHSCSEEEEEEETTT
T ss_pred cHHHHHHHHHHHHhcCceEEEeecCC
Confidence 99999888888999999999999864
No 205
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=98.50 E-value=8.4e-08 Score=68.31 Aligned_cols=41 Identities=27% Similarity=0.613 Sum_probs=27.8
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
..++..+||+++|++|||||||+++|+.+.|...+.+|++.
T Consensus 24 ~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~ 64 (201)
T 2hup_A 24 EQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGV 64 (201)
T ss_dssp --CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------
T ss_pred cccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcce
Confidence 35678899999999999999999999999998888888664
No 206
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.49 E-value=6.8e-08 Score=69.63 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
...+++++|.+|||||||+++++...
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999999763
No 207
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=98.49 E-value=1.8e-07 Score=65.78 Aligned_cols=41 Identities=20% Similarity=0.298 Sum_probs=35.6
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~ 58 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTY 58 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCcccee
Confidence 45678999999999999999999999999999999987554
No 208
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=98.48 E-value=2e-07 Score=65.45 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=35.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
....+||+++|++|||||||+++|+.+.|...+.+|.+..
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~ 56 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRF 56 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEE
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceE
Confidence 4567899999999999999999999999998888886543
No 209
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=98.47 E-value=2e-07 Score=63.93 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=35.4
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++..+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus 3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 43 (170)
T 1z08_A 3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASF 43 (170)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEE
Confidence 45789999999999999999999999999888888876544
No 210
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=98.47 E-value=3e-07 Score=63.52 Aligned_cols=41 Identities=37% Similarity=0.510 Sum_probs=32.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 44 (177)
T 1wms_A 4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEF 44 (177)
T ss_dssp CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEE
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeE
Confidence 45778999999999999999999999999888888876543
No 211
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=98.46 E-value=2.7e-07 Score=66.01 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=35.4
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus 25 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~ 65 (205)
T 1gwn_A 25 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 65 (205)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE
Confidence 45678999999999999999999999999988888876554
No 212
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=98.46 E-value=1.7e-07 Score=66.05 Aligned_cols=44 Identities=14% Similarity=0.115 Sum_probs=33.4
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhccccc-CcccccceeEE
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFL-GLQLTQDYVCL 53 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~-~~~~t~~~~~~ 53 (173)
......+||+++|++|||||||+++|+.+.|.. .+.+|++....
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~ 56 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVE 56 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEE
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEE
Confidence 445678899999999999999999999999998 88899886543
No 213
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.46 E-value=3.6e-07 Score=64.55 Aligned_cols=42 Identities=43% Similarity=0.704 Sum_probs=36.7
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++++.+|++++|++|||||||+++++...+...+.+|++..+
T Consensus 25 ~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~ 66 (191)
T 1oix_A 25 EYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEF 66 (191)
T ss_dssp CCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEE
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEE
Confidence 456789999999999999999999999999888888876544
No 214
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=98.46 E-value=3e-07 Score=64.32 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=35.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++|..+.|...+.+|.+..+
T Consensus 5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~ 44 (184)
T 1m7b_A 5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENY 44 (184)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeE
Confidence 4678999999999999999999999999988888876554
No 215
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=98.46 E-value=2.3e-07 Score=65.28 Aligned_cols=43 Identities=33% Similarity=0.603 Sum_probs=37.2
Q ss_pred CCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 10 YSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 10 ~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+++..+||+++|++|||||||+++++.+.+...+.+|++..+
T Consensus 20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~ 62 (193)
T 2oil_A 20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEF 62 (193)
T ss_dssp CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEE
T ss_pred cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeE
Confidence 3567889999999999999999999999999888888866443
No 216
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=98.46 E-value=1.8e-07 Score=64.84 Aligned_cols=38 Identities=29% Similarity=0.445 Sum_probs=33.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++|+.+.|.. +.+|++..+
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~ 43 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY 43 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence 35899999999999999999999999987 777876554
No 217
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=98.45 E-value=2.3e-07 Score=64.90 Aligned_cols=43 Identities=33% Similarity=0.587 Sum_probs=37.7
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
.++..+||+++|++|||||||++++..+.+...+.+|++..+.
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR 49 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence 3577899999999999999999999999998888888776543
No 218
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=98.45 E-value=1.9e-07 Score=67.14 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=28.6
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++|+.+.|...+.+|....+
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~ 71 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY 71 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 4578999999999999999999999999888888875444
No 219
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2e-07 Score=67.25 Aligned_cols=36 Identities=28% Similarity=0.424 Sum_probs=26.1
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhc--ccccCccc
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQL 46 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~ 46 (173)
..+..+||++||++|||||||++||+.. .|...+.+
T Consensus 33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~ 70 (211)
T 2g3y_A 33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEV 70 (211)
T ss_dssp --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---
T ss_pred cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCc
Confidence 4556799999999999999999999954 34544443
No 220
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.45 E-value=2.7e-07 Score=64.94 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=36.0
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 55 (194)
T 2atx_A 15 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY 55 (194)
T ss_dssp EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence 34678999999999999999999999999988888876544
No 221
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.44 E-value=2.5e-07 Score=65.40 Aligned_cols=39 Identities=28% Similarity=0.430 Sum_probs=34.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~ 65 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTY 65 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceE
Confidence 458999999999999999999999999988888876544
No 222
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=98.44 E-value=3.7e-07 Score=64.29 Aligned_cols=43 Identities=26% Similarity=0.294 Sum_probs=36.8
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
.....+||+++|++|||||||+++|+.+.|...+.+|.+..+.
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~ 61 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFS 61 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeE
Confidence 4557799999999999999999999999999888888776554
No 223
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=98.43 E-value=2.7e-07 Score=64.92 Aligned_cols=42 Identities=55% Similarity=0.816 Sum_probs=32.5
Q ss_pred CCCcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 9 QYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 9 ~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
...+...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 56 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGV 56 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCS
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc
Confidence 345678899999999999999999999999998877777554
No 224
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=98.43 E-value=3.3e-07 Score=64.28 Aligned_cols=42 Identities=24% Similarity=0.514 Sum_probs=36.5
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..++.+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 18 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 59 (189)
T 2gf9_A 18 GSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 59 (189)
T ss_dssp TCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEE
T ss_pred ccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEE
Confidence 467889999999999999999999999999888878866443
No 225
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=98.43 E-value=3.1e-07 Score=62.79 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=34.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
+..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus 3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~ 41 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVD 41 (168)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEE
Confidence 457899999999999999999999999988888886643
No 226
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=98.42 E-value=3.1e-07 Score=64.71 Aligned_cols=42 Identities=26% Similarity=0.371 Sum_probs=35.8
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.++..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 19 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 60 (192)
T 2fg5_A 19 SAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF 60 (192)
T ss_dssp --CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE
T ss_pred ccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE
Confidence 357789999999999999999999999999888888877544
No 227
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=98.42 E-value=5.4e-07 Score=62.79 Aligned_cols=40 Identities=45% Similarity=0.860 Sum_probs=35.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
.+..+||+++|++|||||||+++++.+.+...+.+|.+..
T Consensus 7 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 46 (186)
T 2bme_A 7 YDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE 46 (186)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence 4678999999999999999999999999988888776643
No 228
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.41 E-value=2.6e-07 Score=69.60 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=36.0
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCcc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~ 146 (173)
...++++++|.+|||||||+|++.+..... ..+..+.+.....+.++. .+.+|||||..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 346899999999999999999999875322 222333333222333333 47899999963
No 229
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=98.41 E-value=3.5e-07 Score=65.77 Aligned_cols=41 Identities=20% Similarity=0.197 Sum_probs=35.5
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||||+++|+.+.|...+.+|++..+.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~ 65 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT 65 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence 45789999999999999999999999999999999876653
No 230
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=98.41 E-value=1.7e-07 Score=65.34 Aligned_cols=41 Identities=39% Similarity=0.767 Sum_probs=20.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+++.+||+++|++|||||||+++|+.+.|...+.+|++..+
T Consensus 5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 45 (183)
T 2fu5_C 5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDF 45 (183)
T ss_dssp CSEEEEEEEECCCCC----------------CHHHHHCEEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence 46789999999999999999999999999888888876443
No 231
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=98.41 E-value=3.7e-07 Score=64.70 Aligned_cols=41 Identities=27% Similarity=0.584 Sum_probs=35.9
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+++.+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 45 (203)
T 1zbd_A 5 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDF 45 (203)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEE
T ss_pred cceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeE
Confidence 56789999999999999999999999999888888876433
No 232
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.40 E-value=1.4e-07 Score=66.45 Aligned_cols=40 Identities=28% Similarity=0.643 Sum_probs=35.9
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+++..+||+++|++|||||||+++|+.+.|...+.+|.+.
T Consensus 19 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 58 (191)
T 3dz8_A 19 NFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGI 58 (191)
T ss_dssp EEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETT
T ss_pred ccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeee
Confidence 5778899999999999999999999999998888887653
No 233
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=98.40 E-value=3.7e-07 Score=62.54 Aligned_cols=41 Identities=27% Similarity=0.384 Sum_probs=35.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+...+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus 3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 43 (170)
T 1z0j_A 3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASF 43 (170)
T ss_dssp SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEE
T ss_pred CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEE
Confidence 45678999999999999999999999999888888876543
No 234
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=98.40 E-value=3e-07 Score=65.35 Aligned_cols=40 Identities=43% Similarity=0.767 Sum_probs=25.3
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
+++..+||+++|++|||||||+++++.+.+...+.+|++.
T Consensus 21 ~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~ 60 (200)
T 2o52_A 21 WSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGV 60 (200)
T ss_dssp -CCEEEEEEEEESTTSSHHHHHHHHHC------------C
T ss_pred ccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccc
Confidence 4678899999999999999999999999998887777653
No 235
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=98.40 E-value=2.3e-07 Score=67.08 Aligned_cols=40 Identities=40% Similarity=0.707 Sum_probs=30.5
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
.++..+||+++|+++||||||+++|+.+.|...+.+|++.
T Consensus 9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~ 48 (223)
T 3cpj_B 9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGV 48 (223)
T ss_dssp -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CC
T ss_pred CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccc
Confidence 4678899999999999999999999999998888777664
No 236
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=98.40 E-value=4e-07 Score=64.01 Aligned_cols=42 Identities=43% Similarity=0.764 Sum_probs=36.4
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+..+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus 12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 53 (196)
T 3tkl_A 12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDF 53 (196)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEE
T ss_pred ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE
Confidence 456789999999999999999999999999888888766443
No 237
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=98.39 E-value=5e-07 Score=63.59 Aligned_cols=41 Identities=20% Similarity=0.344 Sum_probs=35.8
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
+..+||+++|++|||||||+++++.+.|...+.+|++..+.
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 45 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFC 45 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEE
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeE
Confidence 35689999999999999999999999999888888775443
No 238
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=98.39 E-value=4.8e-07 Score=62.59 Aligned_cols=41 Identities=39% Similarity=0.583 Sum_probs=33.1
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++..+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~ 46 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDF 46 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEE
Confidence 56789999999999999999999999999888877766443
No 239
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=98.39 E-value=1.8e-07 Score=67.43 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=36.7
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.....+||+++|++|||||||+++|+.+.|...+.+|.+...
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~ 52 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEV 52 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEE
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence 456789999999999999999999999999888888877544
No 240
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.39 E-value=5.1e-07 Score=64.03 Aligned_cols=38 Identities=45% Similarity=0.732 Sum_probs=31.3
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
++.+|++++|++|||||+|+++++...|...+.+|++.
T Consensus 3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~ 40 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGV 40 (199)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSC
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccce
Confidence 46789999999999999999999999998888787653
No 241
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=98.39 E-value=6.5e-07 Score=62.26 Aligned_cols=41 Identities=29% Similarity=0.397 Sum_probs=36.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus 15 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~ 55 (183)
T 3kkq_A 15 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY 55 (183)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence 44678999999999999999999999999998888877554
No 242
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=98.39 E-value=6.2e-07 Score=61.19 Aligned_cols=38 Identities=29% Similarity=0.427 Sum_probs=33.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 40 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY 40 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceE
Confidence 47999999999999999999999999888888876544
No 243
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=98.38 E-value=6.2e-07 Score=61.89 Aligned_cols=41 Identities=68% Similarity=1.104 Sum_probs=35.8
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus 11 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~ 51 (179)
T 1z0f_A 11 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE 51 (179)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCC
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceE
Confidence 45678999999999999999999999999988887776643
No 244
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=98.37 E-value=3.8e-07 Score=64.87 Aligned_cols=41 Identities=41% Similarity=0.764 Sum_probs=35.8
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
++..+||+++|++|||||||++++..+.|...+.+|++..+
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 45 (206)
T 2bcg_Y 5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDF 45 (206)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCE
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence 56789999999999999999999999999888888866433
No 245
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=98.37 E-value=8.2e-07 Score=61.38 Aligned_cols=41 Identities=29% Similarity=0.374 Sum_probs=35.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||||++++..+.|...+.+|.+..+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~ 47 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT 47 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence 34689999999999999999999999999888888776543
No 246
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=98.37 E-value=8.1e-07 Score=61.69 Aligned_cols=39 Identities=31% Similarity=0.301 Sum_probs=35.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||+|+++|+.+.|...+.+|.+..+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 43 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF 43 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence 568999999999999999999999999999988877655
No 247
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=98.36 E-value=3.3e-07 Score=62.74 Aligned_cols=38 Identities=45% Similarity=0.679 Sum_probs=28.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus 2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~ 39 (170)
T 1g16_A 2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID 39 (170)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CC
T ss_pred CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCcccee
Confidence 46899999999999999999999999988877776643
No 248
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=98.36 E-value=4.6e-07 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.380 Sum_probs=34.6
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++++.+.+...+.++.+..+
T Consensus 4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~ 43 (170)
T 1r2q_A 4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAF 43 (170)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEE
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE
Confidence 4678999999999999999999999999888877766443
No 249
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=98.36 E-value=6.5e-07 Score=62.85 Aligned_cols=41 Identities=10% Similarity=0.122 Sum_probs=36.3
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||||+++++.+.|...+.+|++..+.
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 60 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 60 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence 35789999999999999999999999999888888876654
No 250
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=98.36 E-value=2.9e-07 Score=64.47 Aligned_cols=39 Identities=26% Similarity=0.303 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhc--ccccCcccccceeEE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQDYVCL 53 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~~~~~ 53 (173)
.+||+++|++|||||||+++|+.. .|...+.+|++..+.
T Consensus 2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~ 42 (184)
T 2zej_A 2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVK 42 (184)
T ss_dssp -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeE
Confidence 369999999999999999999984 677777788775543
No 251
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.36 E-value=5.7e-07 Score=63.35 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=34.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 45 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY 45 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce
Confidence 458999999999999999999999999888888876554
No 252
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=98.36 E-value=3.2e-07 Score=63.44 Aligned_cols=38 Identities=21% Similarity=0.314 Sum_probs=33.5
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
...+||+++|++|||||||+++++.+.|...+.+|++.
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~ 41 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGL 41 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeE
Confidence 35689999999999999999999999998888888763
No 253
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=98.35 E-value=7.3e-07 Score=63.65 Aligned_cols=39 Identities=28% Similarity=0.370 Sum_probs=34.9
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||+|+.+|+.+.|...+.+|++..+
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~ 46 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF 46 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCE
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeE
Confidence 468999999999999999999999999988888876544
No 254
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=98.35 E-value=5.4e-07 Score=64.61 Aligned_cols=42 Identities=31% Similarity=0.578 Sum_probs=36.6
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+++.+||+++|+++||||||+++|+.+.|...+.+|++..+
T Consensus 21 ~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~ 62 (217)
T 2f7s_A 21 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDF 62 (217)
T ss_dssp CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEE
T ss_pred CcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEE
Confidence 467889999999999999999999999999888888866443
No 255
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=98.35 E-value=7.2e-07 Score=61.09 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=33.7
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 40 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY 40 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence 57999999999999999999999999888888876554
No 256
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=98.33 E-value=6.5e-07 Score=62.79 Aligned_cols=42 Identities=36% Similarity=0.453 Sum_probs=35.9
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.....+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 11 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~ 52 (195)
T 1x3s_A 11 DVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDF 52 (195)
T ss_dssp TEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEE
Confidence 345678999999999999999999999999888888866443
No 257
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=98.33 E-value=1e-06 Score=59.98 Aligned_cols=38 Identities=29% Similarity=0.439 Sum_probs=33.2
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||++++..+.+...+.+|.+...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~ 40 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY 40 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence 37999999999999999999999999888888866443
No 258
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=98.32 E-value=6.8e-07 Score=63.41 Aligned_cols=40 Identities=33% Similarity=0.524 Sum_probs=34.6
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||++++..+.+...+.+|++...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 45 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADF 45 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEE
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceE
Confidence 4678999999999999999999999999888888876443
No 259
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.31 E-value=5.1e-06 Score=70.22 Aligned_cols=35 Identities=26% Similarity=0.441 Sum_probs=29.1
Q ss_pred cCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826 77 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKF 111 (173)
Q Consensus 77 ~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~ 111 (173)
..+........+|+++|++++|||||++++++..+
T Consensus 42 ~lg~~~~i~lp~I~vvG~~saGKSSllnaL~g~~~ 76 (772)
T 3zvr_A 42 AIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDF 76 (772)
T ss_dssp TTTCCGGGCCSEEEEEECTTTCHHHHHHHHHSSCC
T ss_pred hcCccccCCCCEEEEECCCCCcHHHHHHHHhCCCc
Confidence 33444555678999999999999999999999876
No 260
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.31 E-value=1.2e-06 Score=59.91 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=32.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
.+||+++|++|||||||++++..+.+...+.+|.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~ 39 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEE
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence 5799999999999999999999999988887886643
No 261
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=62.13 Aligned_cols=41 Identities=29% Similarity=0.366 Sum_probs=35.6
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||+|++++..+.|...+.+|.+..+
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 51 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 51 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 34578999999999999999999999999888888876554
No 262
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=98.31 E-value=7.1e-07 Score=63.14 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=27.1
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 57 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF 57 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence 45678999999999999999999999999988888876544
No 263
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=98.31 E-value=9.9e-07 Score=61.30 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=34.2
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++|+.+.|...+.+|.+..+
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 42 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 42 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee
Confidence 457999999999999999999999999888888876544
No 264
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=98.29 E-value=6.4e-07 Score=62.80 Aligned_cols=39 Identities=38% Similarity=0.556 Sum_probs=33.3
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
....+||+++|++|||||||+++|+.+.|...+.+|++.
T Consensus 17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 55 (189)
T 1z06_A 17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGV 55 (189)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSC
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcce
Confidence 345689999999999999999999999998888777664
No 265
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=98.29 E-value=1.4e-06 Score=59.28 Aligned_cols=38 Identities=32% Similarity=0.449 Sum_probs=33.5
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~ 41 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 41 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEE
Confidence 47999999999999999999999999888888866544
No 266
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=98.29 E-value=4.2e-07 Score=63.77 Aligned_cols=35 Identities=23% Similarity=0.143 Sum_probs=29.3
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccc
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQL 46 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~ 46 (173)
.....+||+++|++|||||||+ +++.+.|...+.+
T Consensus 10 ~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~ 44 (198)
T 3t1o_A 10 NREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKG 44 (198)
T ss_dssp TTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBC
T ss_pred ccccccEEEEECCCCCCHHHHH-HHHHhhccccccc
Confidence 4567899999999999999999 7888888776543
No 267
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=98.28 E-value=6.5e-07 Score=63.11 Aligned_cols=40 Identities=30% Similarity=0.512 Sum_probs=28.1
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
.+..+||+++|++|||||||+++++.+.|...+.+|.+..
T Consensus 23 ~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~ 62 (192)
T 2il1_A 23 ADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVD 62 (192)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEE
T ss_pred cCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCcccee
Confidence 4678999999999999999999999999988877776643
No 268
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=98.28 E-value=1.6e-06 Score=60.38 Aligned_cols=39 Identities=26% Similarity=0.381 Sum_probs=34.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||++++..+.+...+.+|.....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 41 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY 41 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE
Confidence 468999999999999999999999999888888865443
No 269
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=98.27 E-value=1.1e-06 Score=62.22 Aligned_cols=40 Identities=33% Similarity=0.409 Sum_probs=35.2
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++++.+.|...+.+|.+..+
T Consensus 22 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 61 (201)
T 3oes_A 22 VRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY 61 (201)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred CCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence 4578999999999999999999999999988888877554
No 270
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=98.27 E-value=4e-07 Score=63.18 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=26.2
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
..+||+++|++|||||||+++|+.+.|...+.+|.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~ 43 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFD 43 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC---------
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeee
Confidence 3579999999999999999999999998888888653
No 271
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=98.27 E-value=1e-06 Score=62.26 Aligned_cols=33 Identities=27% Similarity=0.483 Sum_probs=24.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhc--ccccCccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQL 46 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~ 46 (173)
..+||++||++|||||||++||+.. .|...+.+
T Consensus 5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~ 39 (192)
T 2cjw_A 5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV 39 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHSCCC----GG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc
Confidence 4689999999999999999999953 34544443
No 272
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.27 E-value=1.9e-06 Score=59.56 Aligned_cols=42 Identities=33% Similarity=0.604 Sum_probs=34.5
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccc-cCcccccceeE
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYF-LGLQLTQDYVC 52 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~-~~~~~t~~~~~ 52 (173)
.++..+||+++|++|||||+|+++++.+.+. ..+.+|.+..+
T Consensus 6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~ 48 (180)
T 2g6b_A 6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDF 48 (180)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEE
T ss_pred cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEE
Confidence 3567899999999999999999999999985 45667766544
No 273
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=98.26 E-value=8.9e-07 Score=62.13 Aligned_cols=42 Identities=12% Similarity=0.100 Sum_probs=34.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcc-cccCcccccceeEE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQK-YFLGLQLTQDYVCL 53 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~~t~~~~~~ 53 (173)
....+||+++|++|||||||+++++.+. +...+.+|++....
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~~~ 60 (190)
T 2h57_A 18 GSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFSIE 60 (190)
T ss_dssp ---CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEEEE
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCccceeEE
Confidence 4467899999999999999999999988 67778888875543
No 274
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=98.25 E-value=1.5e-06 Score=61.72 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=35.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||++++..+.|...+.+|.+..+
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 62 (201)
T 2gco_A 23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY 62 (201)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE
Confidence 4678999999999999999999999999888888866544
No 275
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=98.25 E-value=1.2e-06 Score=60.63 Aligned_cols=38 Identities=39% Similarity=0.654 Sum_probs=30.9
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
...+||+++|++|||||||+++++.+.+...+.+|.+.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~ 43 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGA 43 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccce
Confidence 45789999999999999999999999998888888654
No 276
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=98.25 E-value=8e-07 Score=63.55 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=30.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
..+||+++|++|||||||+++|+.+.|...+.++..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~~ 41 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITD 41 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcce
Confidence 457999999999999999999999999888876543
No 277
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=98.25 E-value=8e-07 Score=60.58 Aligned_cols=36 Identities=14% Similarity=0.231 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
+||+++|++|||||||+++++.+.|.. +.||++...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~ 36 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV 36 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCceeE
Confidence 589999999999999999999999875 567877443
No 278
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=98.24 E-value=5.4e-07 Score=63.82 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=26.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
....+||+++|++|||||||+++++.+.|...+.+|.+.
T Consensus 25 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~ 63 (199)
T 2p5s_A 25 SQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGV 63 (199)
T ss_dssp ---CEEEEEESSTTSSHHHHHHHHHHCCCC---------
T ss_pred cCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccc
Confidence 456789999999999999999999999998877777663
No 279
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=98.24 E-value=1e-06 Score=61.08 Aligned_cols=39 Identities=28% Similarity=0.408 Sum_probs=33.7
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
....+||+++|++|||||||+++++.+.+...+.+|++.
T Consensus 9 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~ 47 (181)
T 2efe_B 9 KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGA 47 (181)
T ss_dssp -CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCC
T ss_pred CccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCcee
Confidence 456789999999999999999999999998877777654
No 280
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.24 E-value=1.4e-06 Score=67.67 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=21.5
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
....|+++|.+|||||||+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999974
No 281
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=98.24 E-value=1.5e-06 Score=61.87 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=33.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++|+.+.+...+.+|.+..+
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~ 67 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 67 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee
Confidence 4568999999999999999999999999988888876544
No 282
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=98.23 E-value=2.1e-06 Score=59.57 Aligned_cols=40 Identities=30% Similarity=0.391 Sum_probs=34.4
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||+|++++..+.|...+.+|.+..+
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 55 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY 55 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE
Confidence 3568999999999999999999999999888888866544
No 283
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=98.23 E-value=1.2e-07 Score=78.90 Aligned_cols=84 Identities=21% Similarity=0.283 Sum_probs=60.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC--CCCC-----------CCCC---ceeeeeEEEEEEECCeEEEEEEEeCCCcccccc
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ--KFMP-----------DCPH---TIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 150 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~--~~~~-----------~~~~---t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~ 150 (173)
.+|+++|..++|||||..+++.. .... ++.+ ..|+++....+.+..+...++|.||||+.+|..
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF~~ 82 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDFLA 82 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSSTHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHHHH
Confidence 47899999999999999999721 1110 0110 113444443444444556788999999999998
Q ss_pred chhhhhcCCCEEEEEEeCCC
Q psy13826 151 VTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 151 ~~~~~~~~~~~~ilv~d~t~ 170 (173)
.....++-+|++|+|+|...
T Consensus 83 Ev~raL~~~DgavlVVDa~~ 102 (638)
T 3j25_A 83 EVYRSLSVLDGAILLISAKD 102 (638)
T ss_dssp HHHHHHTTCSEEECCEESSC
T ss_pred HHHHHHHHhCEEEEEEeCCC
Confidence 88888999999999999864
No 284
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=98.23 E-value=2.3e-06 Score=57.98 Aligned_cols=38 Identities=26% Similarity=0.390 Sum_probs=32.8
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||++++..+.+...+.+|.+...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~ 40 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY 40 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence 36999999999999999999999999888877765443
No 285
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=98.22 E-value=1e-06 Score=63.17 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=35.2
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
....+||+++|++|||||||+++++.+.+...+.+|.+....
T Consensus 8 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~ 49 (218)
T 4djt_A 8 RELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNH 49 (218)
T ss_dssp --CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEE
T ss_pred ccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeE
Confidence 456789999999999999999999999998888888775443
No 286
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=98.22 E-value=7e-07 Score=62.25 Aligned_cols=40 Identities=28% Similarity=0.218 Sum_probs=31.8
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
....+||+++|++|||||||+++|+.+.| ..+.+|.+...
T Consensus 18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~ 57 (181)
T 2h17_A 18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV 57 (181)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSC
T ss_pred CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceee
Confidence 45678999999999999999999999998 55667766543
No 287
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=98.21 E-value=3.7e-07 Score=64.72 Aligned_cols=40 Identities=45% Similarity=0.833 Sum_probs=34.6
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccce
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDY 50 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~ 50 (173)
..+..+||+++|++|||||||+++++.+.+...+.++.+.
T Consensus 29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~ 68 (199)
T 3l0i_B 29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGV 68 (199)
T ss_dssp CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCC
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccc
Confidence 3567899999999999999999999999998877777553
No 288
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.20 E-value=1.9e-06 Score=61.40 Aligned_cols=41 Identities=46% Similarity=0.715 Sum_probs=33.0
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+..+||+++|++|||||+|+++++.+.|...+.+|++..
T Consensus 16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~ 56 (213)
T 3cph_A 16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGID 56 (213)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCC
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce
Confidence 34567899999999999999999999999988887776643
No 289
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=98.20 E-value=6.8e-07 Score=63.34 Aligned_cols=30 Identities=37% Similarity=0.481 Sum_probs=24.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
.+..+||+++|++|||||||+++|+...+.
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~ 49 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGD 49 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCCEECC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHhccCC
Confidence 456789999999999999999999765443
No 290
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=2.1e-06 Score=61.12 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=28.7
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.+...+.+|.+..+
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 62 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY 62 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE
Confidence 568999999999999999999999999888888866544
No 291
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=98.19 E-value=1.9e-06 Score=60.10 Aligned_cols=40 Identities=15% Similarity=0.282 Sum_probs=33.5
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
...+||+++|++|||||||+++++.+. ...+.+|++....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~ 55 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIK 55 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEE
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceE
Confidence 356899999999999999999999988 7778888875543
No 292
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=98.19 E-value=1.1e-06 Score=61.51 Aligned_cols=38 Identities=26% Similarity=0.231 Sum_probs=32.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.+. .+.+|++...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~ 52 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNV 52 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSC
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccce
Confidence 3579999999999999999999999888 6777876443
No 293
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=98.18 E-value=3.4e-06 Score=59.01 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=33.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||++++..+.+...+.+|.+..+
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 58 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY 58 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence 568999999999999999999999999888777765444
No 294
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=98.18 E-value=2.1e-06 Score=59.05 Aligned_cols=32 Identities=25% Similarity=0.445 Sum_probs=24.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ 45 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~ 45 (173)
..+||+++|++|||||||+++|+.+.+...+.
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~ 34 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLHE 34 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----CC
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCccccC
Confidence 46899999999999999999999998865543
No 295
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=98.17 E-value=1.3e-06 Score=60.91 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=31.8
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++++.+.+. .+.+|.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~-~~~~t~g~~~ 52 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDIS-HITPTQGFNI 52 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCE-EEEEETTEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCC-cccCcCCeEE
Confidence 45689999999999999999999988664 4667777543
No 296
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.16 E-value=1.3e-06 Score=67.71 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=22.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
....|+++|.+|||||||++++++
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~ 96 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGK 96 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 467899999999999999999986
No 297
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=98.16 E-value=9.7e-07 Score=61.31 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=32.8
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++++.+.+ ..+.+|++...
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~ 54 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNV 54 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCE
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccce
Confidence 3568999999999999999999999988 56677777543
No 298
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=98.16 E-value=2.6e-06 Score=58.32 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=31.4
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
.+||+++|++|||||||+++++.+.+.. +.+|++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~~ 43 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFNV 43 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEE
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccce
Confidence 4799999999999999999999998864 567776544
No 299
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=98.14 E-value=1.8e-06 Score=60.91 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=32.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.|.. +.+|++...
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~~~ 65 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGFNV 65 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCceeE
Confidence 46899999999999999999999999874 567877543
No 300
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=98.13 E-value=7.9e-06 Score=68.88 Aligned_cols=88 Identities=14% Similarity=0.126 Sum_probs=58.5
Q ss_pred cceeeEEEEEeCCCCChHHHHHHHHhC--------C------CCCC--CCCceeeeeEEEEEEE--C-----CeEEEEEE
Q psy13826 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQ--------K------FMPD--CPHTIGVEFGTRIIEV--H-----GEKIKLQI 139 (173)
Q Consensus 83 ~~~~~ki~l~G~~~vGKssl~~~~~~~--------~------~~~~--~~~t~~~~~~~~~~~~--~-----~~~~~l~i 139 (173)
-+..-+|+++|..++|||||..+++.. + +.+. .....|+++....+.+ . ...+.+++
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 356679999999999999999998721 1 1110 0112233333323322 1 13578999
Q ss_pred EeCCCccccccchhhhhcCCCEEEEEEeCCC
Q psy13826 140 WDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170 (173)
Q Consensus 140 ~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~ 170 (173)
.||||+.+|..-....++-+|++|+|+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDave 120 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTS 120 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCC
Confidence 9999999999888888999999999999863
No 301
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=98.12 E-value=1.9e-06 Score=60.12 Aligned_cols=34 Identities=29% Similarity=0.301 Sum_probs=29.6
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
+||+++|++|||||||+++++.+.|...+.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~t 35 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGVT 35 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTCT
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCccCCCCCcc
Confidence 5999999999999999999999998877666543
No 302
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=98.12 E-value=1.8e-06 Score=59.10 Aligned_cols=33 Identities=30% Similarity=0.496 Sum_probs=22.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
.+||+++|++|||||||+++|+...+...+.++
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~ 34 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEME 34 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC---------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccccCC
Confidence 479999999999999999999987776554444
No 303
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=98.11 E-value=3.6e-06 Score=59.23 Aligned_cols=38 Identities=26% Similarity=0.256 Sum_probs=30.7
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+++++.+.+. .+.+|.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~~~ 59 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHPTS 59 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSCEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCCCe
Confidence 3569999999999999999999999886 4667766543
No 304
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.11 E-value=2.2e-06 Score=63.35 Aligned_cols=38 Identities=24% Similarity=0.536 Sum_probs=31.6
Q ss_pred CcceeeEEEEEcCC---------CCchhhhhHHhhh---cccccCccccc
Q psy13826 11 SYSYIFKYIIIGDM---------GVGKSCLLHQFTE---QKYFLGLQLTQ 48 (173)
Q Consensus 11 ~~~~~~k~~~~g~~---------~vgkt~l~~~~~~---~~~~~~~~~t~ 48 (173)
.....+||+++|++ |||||||++||+. +.|...+.+|.
T Consensus 15 ~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~ 64 (255)
T 3c5h_A 15 YFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVL 64 (255)
T ss_dssp SCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEE
T ss_pred CCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcc
Confidence 45677999999999 9999999999999 66766666553
No 305
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=98.08 E-value=2e-06 Score=60.13 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=32.5
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++++.+.+.. +.+|++...
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~~~ 58 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGVNL 58 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTCCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCceEE
Confidence 356899999999999999999999998875 566776543
No 306
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=98.06 E-value=3.6e-06 Score=58.07 Aligned_cols=34 Identities=21% Similarity=0.096 Sum_probs=29.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
..+||+++|++|||||||+++++.+.+...+.++
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~ 40 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGG 40 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCCCCc
Confidence 3569999999999999999999999988766554
No 307
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.06 E-value=6.2e-06 Score=64.32 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=56.7
Q ss_pred EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhCCCCC-----CCCCceeeeeEEEEEE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMP-----DCPHTIGVEFGTRIIE 129 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~~~~~-----~~~~t~~~~~~~~~~~ 129 (173)
.+++..+.+...++..+.... ...+++++|.+|||||||+|++++..... ...+..+.+.....+.
T Consensus 138 ~iSA~~g~gi~~L~~~l~~~~---------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~ 208 (368)
T 3h2y_A 138 LISAAKGQGIAELADAIEYYR---------GGKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIP 208 (368)
T ss_dssp ECCTTTCTTHHHHHHHHHHHH---------TTSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEE
T ss_pred EEeCCCCcCHHHHHhhhhhhc---------ccceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEE
Confidence 455555666666555443321 12479999999999999999999863111 1112223333333344
Q ss_pred ECCeEEEEEEEeCCCcccccc----chhh----h--hcCCCEEEEEEeC
Q psy13826 130 VHGEKIKLQIWDTAGQERFRA----VTRS----Y--YRGAAGALMVIDV 168 (173)
Q Consensus 130 ~~~~~~~l~i~D~~g~~~~~~----~~~~----~--~~~~~~~ilv~d~ 168 (173)
++.. +.++||||-..... +... + .+..+.++++.|.
T Consensus 209 ~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 209 LDEE---SSLYDTPGIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp SSSS---CEEEECCCBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred ecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence 4433 67999999643221 1111 1 2556777777665
No 308
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=98.05 E-value=3.1e-06 Score=58.08 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=25.0
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccCccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQL 46 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~ 46 (173)
+||+++|++|||||||+++++.+.+.....+
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~ 34 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENVYIGNWP 34 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSSSCC---
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCeeccCCC
Confidence 6999999999999999999998876544333
No 309
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=98.04 E-value=3.1e-06 Score=60.02 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=26.7
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCccccccee
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYV 51 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~ 51 (173)
..+||+++|++|||||||+++++.+++. .+.+|++..
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~~~ 60 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLHPT 60 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCCce
Confidence 3579999999999999999999998875 456676543
No 310
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.03 E-value=6.6e-06 Score=64.18 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=57.7
Q ss_pred EeeccCcccchhhhhhhhhccccCCCCCcceeeEEEEEeCCCCChHHHHHHHHhC-----CCCCCCCCceeeeeEEEEEE
Q psy13826 55 LVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ-----KFMPDCPHTIGVEFGTRIIE 129 (173)
Q Consensus 55 ~~s~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~ki~l~G~~~vGKssl~~~~~~~-----~~~~~~~~t~~~~~~~~~~~ 129 (173)
.+++..+.....+...+.... ...+++++|.+|||||||+|.+++. .... ..+..+.+.....+.
T Consensus 140 ~iSA~~g~gi~~L~~~I~~~~---------~~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~-~~~~~gtT~~~~~~~ 209 (369)
T 3ec1_A 140 LVSAAKGIGMAKVMEAINRYR---------EGGDVYVVGCTNVGKSTFINRIIEEATGKGNVIT-TSYFPGTTLDMIEIP 209 (369)
T ss_dssp ECBTTTTBTHHHHHHHHHHHH---------TTSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCE-EEECTTSSCEEEEEE
T ss_pred EEECCCCCCHHHHHHHHHhhc---------ccCcEEEEcCCCCchHHHHHHHHhhccCCcccee-ecCCCCeEEeeEEEE
Confidence 455555555555555443322 1247999999999999999999975 1110 011112222233344
Q ss_pred ECCeEEEEEEEeCCCcccccc--------chhhhh--cCCCEEEEEEeC
Q psy13826 130 VHGEKIKLQIWDTAGQERFRA--------VTRSYY--RGAAGALMVIDV 168 (173)
Q Consensus 130 ~~~~~~~l~i~D~~g~~~~~~--------~~~~~~--~~~~~~ilv~d~ 168 (173)
++.. +.++||||-..... ....++ +..+.++++.|.
T Consensus 210 ~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 255 (369)
T 3ec1_A 210 LESG---ATLYDTPGIINHHQMAHFVDARDLKIITPKREIHPRVYQLNE 255 (369)
T ss_dssp CSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECT
T ss_pred eCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHhcccccCceEEEEcC
Confidence 4433 67899999643221 112222 667888888776
No 311
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=98.03 E-value=1.5e-06 Score=61.01 Aligned_cols=36 Identities=17% Similarity=0.244 Sum_probs=24.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCccccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ 48 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~ 48 (173)
...+||+++|++|||||||+++++.+.|...+.++.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~ 56 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKP 56 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC----------
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCC
Confidence 346799999999999999999999988766555543
No 312
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=98.03 E-value=1.1e-06 Score=62.26 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=7.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhc--ccccCcccccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQ--KYFLGLQLTQD 49 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~--~~~~~~~~t~~ 49 (173)
...+||+++|++|||||||+++++.+ .|...+.+|.+
T Consensus 18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~ 56 (208)
T 2yc2_C 18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG 56 (208)
T ss_dssp EEEEEEEEC------------------------------
T ss_pred ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccc
Confidence 46789999999999999999999999 88888888876
No 313
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.01 E-value=1.6e-06 Score=66.90 Aligned_cols=34 Identities=12% Similarity=-0.020 Sum_probs=24.3
Q ss_pred EEEEEEeCCCccccccchhhhhcCCCEEEEEEeCCCC
Q psy13826 135 IKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHV 171 (173)
Q Consensus 135 ~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~ 171 (173)
+.+.||||+|...... ...+.+|++++|+|.++.
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGG 182 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC---
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCcc
Confidence 5688999999654332 246899999999998754
No 314
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=98.00 E-value=7.4e-06 Score=57.06 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=27.5
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
..+||+++|++|||||||+++++.+.+.....++
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~ 39 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPG 39 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCC
Confidence 3579999999999999999999987765443343
No 315
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.96 E-value=1.3e-07 Score=76.08 Aligned_cols=87 Identities=14% Similarity=0.166 Sum_probs=53.4
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCCCCCCCCceeeeeEEEEEEECCeEEEEEEEeCCCccc--cccch--------hh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER--FRAVT--------RS 154 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~--~~~~~--------~~ 154 (173)
...+|+++|.+|+||||+.+++....... ..++...+.........+......+||..|++. ....+ ..
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l~~~-~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYLNFI-GVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHhcc-CCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45789999999999999999998653211 122322211100001112223456899999843 23332 55
Q ss_pred hhcCCCEEEEEEeCCCCC
Q psy13826 155 YYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 155 ~~~~~~~~ilv~d~t~~~ 172 (173)
++..+.+.++|+|.+|..
T Consensus 117 ~l~~~~G~~vV~D~tn~~ 134 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTT 134 (469)
T ss_dssp HHHTTCCSEEEEESCCCS
T ss_pred HHHhCCCCEEEEeCCCCC
Confidence 677788999999999863
No 316
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=97.20 E-value=1.1e-06 Score=62.46 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=34.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
...+||+++|++|||||||+++|+.+.|...+.+|.+...
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~ 67 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 67 (204)
Confidence 3568999999999999999999999999888877765433
No 317
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.94 E-value=6.8e-06 Score=55.96 Aligned_cols=27 Identities=33% Similarity=0.536 Sum_probs=22.2
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
.+||+++|++|||||||++++....+.
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~ 28 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG 28 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence 469999999999999999999876654
No 318
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=97.92 E-value=1.3e-05 Score=59.01 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=22.6
Q ss_pred CcceeeEEEEEeCCCCChHHHHHHHH
Q psy13826 82 SYSYIFKYIIIGDMGVGKSCLLHQFT 107 (173)
Q Consensus 82 ~~~~~~ki~l~G~~~vGKssl~~~~~ 107 (173)
.......+++.|.+||||||+++.++
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La 35 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFG 35 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHH
Confidence 34456789999999999999999998
No 319
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.92 E-value=1.4e-05 Score=65.92 Aligned_cols=62 Identities=23% Similarity=0.205 Sum_probs=38.7
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHhCCCCCCCC-----CceeeeeEEEEEEE-CCeEEEEEEEeCCCccc
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCP-----HTIGVEFGTRIIEV-HGEKIKLQIWDTAGQER 147 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~~~~~~~~~-----~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~ 147 (173)
.....|+++|.+|||||||+|++++....-... .|.+...+. ..+ ......+.++||+|...
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWC--VPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEE--EECSSSTTCEEEEEEECCBCC
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEee--cccccCCCceEEEecCCCcCc
Confidence 356889999999999999999999876321222 222221111 111 12233577899999653
No 320
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=97.91 E-value=1.6e-05 Score=60.43 Aligned_cols=39 Identities=28% Similarity=0.380 Sum_probs=34.3
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~ 52 (173)
..+||+++|++|||||||+.+|+.+.|...+.+|.+..+
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~ 192 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY 192 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEE
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCccccee
Confidence 357999999999999999999999999888888876544
No 321
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=97.89 E-value=6.5e-06 Score=63.11 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=28.9
Q ss_pred EEEEEcCCCCchhhhhHHhhhccccc---CcccccceeEE
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFL---GLQLTQDYVCL 53 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~---~~~~t~~~~~~ 53 (173)
||+++|++|||||||+.++.++.+.. .+.+|++..+.
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~ 40 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE 40 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence 79999999999999999888665433 25678776554
No 322
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=97.89 E-value=1.5e-05 Score=60.59 Aligned_cols=40 Identities=23% Similarity=0.194 Sum_probs=31.7
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhc--ccc-cCcccccceeEEE
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQ--KYF-LGLQLTQDYVCLR 54 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~--~~~-~~~~~t~~~~~~~ 54 (173)
.+||+++|++|||||||+++++.+ .+. ..+.+|++..+..
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~ 45 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSH 45 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEE
Confidence 479999999999999999999987 443 3567787765543
No 323
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.83 E-value=1.6e-05 Score=55.51 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=25.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
...+||+++|++|||||||+++++.+.+
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~ 48 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKI 48 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCcc
Confidence 4567999999999999999999998874
No 324
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=97.83 E-value=1e-05 Score=66.06 Aligned_cols=42 Identities=24% Similarity=0.199 Sum_probs=26.9
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
....+||+++|++|||||||+++++.+.|...+.+|++....
T Consensus 38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~ 79 (535)
T 3dpu_A 38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVV 79 (535)
T ss_dssp CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEE
T ss_pred cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence 456789999999999999999999999999888888876554
No 325
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.81 E-value=1.2e-05 Score=57.55 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~ 42 (173)
...+||+++|++|||||||+++++.+.|..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~ 39 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 39 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 346799999999999999999999988764
No 326
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.80 E-value=8.9e-06 Score=58.55 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=29.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
..+||+++|++|||||||+.+|+.+.|...+.++++
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~ 72 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIA 72 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEE
Confidence 357999999999999999999999877665555554
No 327
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.80 E-value=1.1e-05 Score=56.55 Aligned_cols=30 Identities=33% Similarity=0.351 Sum_probs=26.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~ 42 (173)
...+||+++|++|||||||+++++.+.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~ 75 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP 75 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC-
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence 456799999999999999999999988754
No 328
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=97.79 E-value=1.4e-05 Score=56.39 Aligned_cols=32 Identities=16% Similarity=0.066 Sum_probs=23.0
Q ss_pred CcceeeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 11 ~~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
.....+||+++|++|||||||++++.. .|...
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~-~~~~~ 47 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFH-KMSPN 47 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHS-CCCGG
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHh-cCCCc
Confidence 355678999999999999999986554 45444
No 329
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=97.79 E-value=1.5e-05 Score=61.20 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEE
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCL 53 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~ 53 (173)
..+||+++|+++||||+|+++|..+.|...+ +|++....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~~ 202 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNVE 202 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEEE
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEEE
Confidence 4569999999999999999999999987654 67765543
No 330
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.78 E-value=4.1e-05 Score=52.89 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
.+||+++|++|||||||+++++...+
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36999999999999999999998764
No 331
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.75 E-value=3.6e-05 Score=57.04 Aligned_cols=30 Identities=27% Similarity=0.411 Sum_probs=26.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~ 42 (173)
...+||+++|++|||||||+++++...+..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g~~~~~ 32 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTGTKQYV 32 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHTTCEEE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHCCCCcc
Confidence 356899999999999999999999877743
No 332
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.73 E-value=2e-05 Score=53.27 Aligned_cols=25 Identities=32% Similarity=0.599 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
.||+++|++|||||||++++..+.+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~ 26 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRS 26 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCe
Confidence 5899999999999999999998875
No 333
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.71 E-value=1.9e-05 Score=57.05 Aligned_cols=28 Identities=21% Similarity=0.212 Sum_probs=25.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
..+||+++|++|||||||+++|+.+.|.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~~~ 55 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRANVD 55 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence 4689999999999999999999999885
No 334
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.70 E-value=4.1e-05 Score=55.78 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=27.1
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccccCc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGL 44 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~ 44 (173)
....+||+++|++|||||||+++++...+....
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 446789999999999999999999998885554
No 335
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.68 E-value=2.5e-05 Score=58.31 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=22.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
.|+++++|++|+|||||++.+++-.
T Consensus 2 ~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 5899999999999999999999754
No 336
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.64 E-value=5.4e-05 Score=58.31 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.7
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
...+.++|++|+|||||++.+++
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g 77 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGS 77 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 337
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=97.62 E-value=5.5e-05 Score=56.39 Aligned_cols=31 Identities=26% Similarity=0.597 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHh-hhcccccCc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQF-TEQKYFLGL 44 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~-~~~~~~~~~ 44 (173)
+.++|+++|++|+|||||++++ ..+.+...+
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~ 38 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEY 38 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-----
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCC
Confidence 5789999999999999999984 455565554
No 338
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=97.61 E-value=3.8e-05 Score=57.41 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.5
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
.+||+++|++|||||||+++++...+
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~ 28 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ 28 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC
Confidence 47999999999999999999998653
No 339
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.61 E-value=6e-05 Score=56.03 Aligned_cols=33 Identities=18% Similarity=0.332 Sum_probs=27.0
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT 47 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t 47 (173)
.+||+++|++|||||||+++++...+.....++
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~ 35 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPG 35 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCC
Confidence 369999999999999999999988775444333
No 340
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=97.58 E-value=8.3e-05 Score=59.98 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=33.7
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccccCcccccceeEEE
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR 54 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~~~~~~ 54 (173)
...+||+++|+++||||||+++|+.+++.. +.+|++.....
T Consensus 320 ~~~~ki~lvG~~nvGKSsLl~~l~~~~~~~-~~~T~~~~~~~ 360 (497)
T 3lvq_E 320 NKEMRILMLGLDAAGKTTILYKLKLGQSVT-TIPTVGFNVET 360 (497)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEEEEE
T ss_pred ccceeEEEEcCCCCCHHHHHHHHhcCCCCC-cCCccceeEEE
Confidence 356899999999999999999999999765 55687766543
No 341
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.58 E-value=2.6e-05 Score=55.32 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=22.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccccCcccccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQD 49 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~~t~~ 49 (173)
...+++++|++|+|||||+++++...|.....++.+
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G 60 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG 60 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence 346899999999999999999998876544445544
No 342
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.51 E-value=6.7e-05 Score=55.26 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=26.9
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcc-cccCcc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQK-YFLGLQ 45 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~-~~~~~~ 45 (173)
..++|+++|++|||||||+++++... |...+.
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~ 53 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLG 53 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTT
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCC
Confidence 46899999999999999999999877 554443
No 343
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.49 E-value=0.00027 Score=56.02 Aligned_cols=27 Identities=33% Similarity=0.773 Sum_probs=23.7
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhCCC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF 111 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~~~ 111 (173)
..++++++|++|+|||||++.+++..+
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l 67 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKF 67 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccc
Confidence 457899999999999999999998754
No 344
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.49 E-value=8.4e-05 Score=56.31 Aligned_cols=28 Identities=36% Similarity=0.368 Sum_probs=25.2
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
...+|+++|++|||||||+++++..++.
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ 33 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA 33 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence 4568999999999999999999998874
No 345
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.47 E-value=0.00014 Score=54.34 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.7
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
+||+++|++|||||||+++++...+...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~~~v~ 31 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSRQRVG 31 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcccC
Confidence 6999999999999999999998876433
No 346
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.46 E-value=4.4e-05 Score=54.66 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=24.9
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
...+||+++|++|||||||+++++.+.+
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~~ 54 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQKR 54 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCSS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 3467999999999999999999998863
No 347
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.44 E-value=8.7e-05 Score=54.51 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=25.5
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
....+||+++|.+|||||||+++++...+.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~ 47 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRF 47 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC
T ss_pred CCCceEEEEECCCCCcHHHHHHHHhCCCCc
Confidence 346789999999999999999999987764
No 348
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.41 E-value=0.00084 Score=54.37 Aligned_cols=24 Identities=17% Similarity=0.232 Sum_probs=20.4
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHH
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFT 107 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~ 107 (173)
.....|+++|.+||||||+++.++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA 122 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLA 122 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345689999999999999999998
No 349
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.38 E-value=0.00018 Score=53.23 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=23.3
Q ss_pred EEEEEcCCCCchhhhhHHhhhccccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKYFL 42 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~~~ 42 (173)
||+++|++|||||||+++++...+..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~~~v 28 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNANQRV 28 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTSEEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCc
Confidence 89999999999999999999886643
No 350
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=97.35 E-value=0.00015 Score=53.59 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.7
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+||+++|++|||||||+++++.+.+
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQV 61 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 468999999999999999999998875
No 351
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=97.34 E-value=0.00011 Score=55.08 Aligned_cols=29 Identities=21% Similarity=0.470 Sum_probs=26.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
...+||+++|+++||||||+++++...|.
T Consensus 24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 35679999999999999999999998875
No 352
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=97.30 E-value=0.00016 Score=53.74 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+||+++|++|||||||+++++.+.+
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~ 64 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERV 64 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence 468999999999999999999998876
No 353
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=97.22 E-value=0.00014 Score=55.01 Aligned_cols=32 Identities=25% Similarity=0.497 Sum_probs=21.3
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhc-ccccC
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQ-KYFLG 43 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~-~~~~~ 43 (173)
.+..++|+++|++|+|||||++++... .++.+
T Consensus 15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~ 47 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPER 47 (301)
T ss_dssp ---CEEEEEEEETTSSHHHHHHHHHC-------
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCC
Confidence 356789999999999999999997653 55543
No 354
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=97.20 E-value=0.00044 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.9
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
....-|.++|++++|||+|+|++++
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg 89 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLR 89 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhh
Confidence 3456788999999999999999986
No 355
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.14 E-value=0.00018 Score=51.73 Aligned_cols=32 Identities=9% Similarity=0.061 Sum_probs=22.1
Q ss_pred eCCCccccccchhhhhcCCCEEEEEEeCCCCC
Q psy13826 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172 (173)
Q Consensus 141 D~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~ 172 (173)
+.+||+.++.+|+.||.++|++|+|+|.+|++
T Consensus 108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~ 139 (227)
T 3l82_B 108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHK 139 (227)
T ss_dssp ---------CCHHHHHHHCSEEEEEEECBTTC
T ss_pred ccCcHHHHHHHHHHHhcCCCEEEEEeccccHh
Confidence 44689999999999999999999999999975
No 356
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.13 E-value=0.00018 Score=55.92 Aligned_cols=32 Identities=25% Similarity=0.574 Sum_probs=22.9
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhh-hcccccCc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFT-EQKYFLGL 44 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~-~~~~~~~~ 44 (173)
+..++|+++|++|+|||||++++. .+.|...+
T Consensus 35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~ 67 (361)
T 2qag_A 35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERV 67 (361)
T ss_dssp CCEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence 456899999999999999999954 45554443
No 357
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.12 E-value=0.00026 Score=56.02 Aligned_cols=29 Identities=24% Similarity=0.579 Sum_probs=25.4
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
.+..++|+++|++|+|||||++.++...+
T Consensus 28 ~~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 28 RGFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp -CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred cCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 45678999999999999999999998776
No 358
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.08 E-value=0.00033 Score=48.92 Aligned_cols=22 Identities=45% Similarity=0.782 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
+++++|++|+|||||++.+++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999998864
No 359
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.05 E-value=0.00046 Score=52.32 Aligned_cols=30 Identities=30% Similarity=0.273 Sum_probs=26.6
Q ss_pred cceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 12 ~~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
+....+|+++|++|||||||+++++...+.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~~~~ 36 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGTKVS 36 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence 456679999999999999999999998874
No 360
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.03 E-value=0.00036 Score=48.58 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5899999999999999999864
No 361
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.91 E-value=0.00051 Score=48.62 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.++++|++|+|||||++.+.+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 362
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.89 E-value=0.00069 Score=51.19 Aligned_cols=28 Identities=39% Similarity=0.429 Sum_probs=24.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
...+|+++|++|||||||+++++...+.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~ 34 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS 34 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc
Confidence 3458999999999999999999988763
No 363
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=96.86 E-value=0.00045 Score=53.35 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=25.7
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYFL 42 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~~~ 42 (173)
...+|+++|+++||||||+++++...|..
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p 58 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLP 58 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCC
Confidence 45699999999999999999999988743
No 364
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.85 E-value=0.00076 Score=52.16 Aligned_cols=29 Identities=17% Similarity=0.379 Sum_probs=25.3
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccC
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLG 43 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~ 43 (173)
..+|+++|++|+|||||+++++...|...
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp~ 62 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLPR 62 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCCC
Confidence 34899999999999999999999887443
No 365
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.85 E-value=0.00068 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=20.3
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|++|+||||+++.+++.
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999999875
No 366
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.84 E-value=0.00069 Score=52.62 Aligned_cols=25 Identities=40% Similarity=0.514 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
+||+++|.+|||||||+++++...+
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~ 27 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI 27 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4999999999999999999998774
No 367
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.83 E-value=0.0014 Score=46.61 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=20.9
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
....+.|+|++|+|||||++.+.+
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~ 44 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAA 44 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999998875
No 368
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.81 E-value=0.00071 Score=48.09 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|||||||++.++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999999864
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.80 E-value=0.00072 Score=47.60 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.3
Q ss_pred EEEEeCCCCChHHHHHHHHhC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~ 109 (173)
|+|+|++||||+||+++++..
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 799999999999999999854
No 370
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.79 E-value=0.00074 Score=47.54 Aligned_cols=22 Identities=27% Similarity=0.530 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|+|||||++.+++.
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999874
No 371
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=96.79 E-value=0.00054 Score=55.15 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=20.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
.+||+++|++|||||||+++++.+.
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4789999999999999999999875
No 372
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.79 E-value=0.00072 Score=47.22 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.1
Q ss_pred EEEEeCCCCChHHHHHHHHhC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~ 109 (173)
++++|++|+|||||++.+++.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 689999999999999999854
No 373
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.77 E-value=0.00077 Score=48.63 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-++++|++|+|||||++.+++..
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhccC
Confidence 58899999999999999998753
No 374
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=96.76 E-value=0.0008 Score=49.89 Aligned_cols=25 Identities=20% Similarity=0.454 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
++++++|.+|||||||++++.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5999999999999999999997665
No 375
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=96.75 E-value=0.00064 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.476 Sum_probs=23.9
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+||+++|++|||||||+++++...+
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~~ 249 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSDR 249 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence 347899999999999999999998754
No 376
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=96.74 E-value=0.00084 Score=47.70 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|+|||||++.+++-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4789999999999999999874
No 377
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=96.71 E-value=0.0009 Score=48.10 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|++|+|||||++.+++-
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 5889999999999999999874
No 378
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.70 E-value=0.00094 Score=47.56 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|+||||+++.++..
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4889999999999999999875
No 379
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=96.70 E-value=0.00088 Score=50.53 Aligned_cols=29 Identities=17% Similarity=0.438 Sum_probs=25.4
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
....+|+++|++++|||||+++++...+.
T Consensus 22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~l 50 (315)
T 1jwy_B 22 LDLPQIVVVGSQSSGKSSVLENIVGRDFL 50 (315)
T ss_dssp TCCCEEEEEECSSSSHHHHHHHHHTSCCC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHCCCcC
Confidence 34569999999999999999999988763
No 380
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.66 E-value=0.00095 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+++++|.+|+|||+|+.+++...+
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999997643
No 381
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.66 E-value=0.00079 Score=46.45 Aligned_cols=18 Identities=33% Similarity=0.601 Sum_probs=16.4
Q ss_pred EEEEEeCCCCChHHHHHH
Q psy13826 88 KYIIIGDMGVGKSCLLHQ 105 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~ 105 (173)
-++++|++|+|||||++.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999999994
No 382
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=96.65 E-value=0.0017 Score=50.47 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=21.3
Q ss_pred eE-EEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FK-YIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k-~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
++ |+++|++|+|||||+++++...+
T Consensus 179 ~~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 179 IPSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCc
Confidence 45 99999999999999999998776
No 383
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=96.63 E-value=0.00093 Score=52.54 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
+||+++|.++||||||+++++....
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~~ 25 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVDV 25 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4899999999999999999998763
No 384
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=96.62 E-value=0.0007 Score=54.59 Aligned_cols=25 Identities=32% Similarity=0.632 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
+||+++|++|||||||+++++...+
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~ 268 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDR 268 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCC
Confidence 7999999999999999999998864
No 385
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=96.62 E-value=0.00098 Score=51.51 Aligned_cols=27 Identities=41% Similarity=0.438 Sum_probs=24.2
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..++++++|++|||||||+++++...+
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456999999999999999999998765
No 386
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=96.61 E-value=0.00044 Score=52.04 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=27.3
Q ss_pred CCCccccccchhhhhcCCCEEEEEEeCCCCCC
Q psy13826 142 TAGQERFRAVTRSYYRGAAGALMVIDVSHVKE 173 (173)
Q Consensus 142 ~~g~~~~~~~~~~~~~~~~~~ilv~d~t~~~S 173 (173)
.+||+.++.+|+.||.++|++|+|+|.+|++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreR 225 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKR 225 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhH
Confidence 46889999999999999999999999999863
No 387
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.60 E-value=0.0013 Score=45.07 Aligned_cols=22 Identities=36% Similarity=0.668 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.|+++|++|+||||+++.+.+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999864
No 388
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.60 E-value=0.0012 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.-|+++|++||||||+++.+...
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 45899999999999999999764
No 389
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.58 E-value=0.0011 Score=46.60 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=19.0
Q ss_pred EEEEcCCCCchhhhhHHhhhc
Q psy13826 18 YIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 18 ~~~~g~~~vgkt~l~~~~~~~ 38 (173)
||++|++|+|||+|+.++...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998754
No 390
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.57 E-value=0.0017 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.5
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
.++++|++|+|||+|+.++...
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999988853
No 391
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.57 E-value=0.0014 Score=48.80 Aligned_cols=26 Identities=27% Similarity=0.677 Sum_probs=22.2
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
+.+.++++|++|+|||+|++-++.-.
T Consensus 1 f~f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp CEEEEEEEESSSSSHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCCC
Confidence 35799999999999999999887543
No 392
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0013 Score=44.78 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.|++.|.+|+||||+++.+...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998754
No 393
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.54 E-value=0.0017 Score=45.68 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=22.5
Q ss_pred CCcceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 81 YSYSYIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 81 ~~~~~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
........|++.|.+|+||||+.+.+..
T Consensus 15 ~~~~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 15 VPRGSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp -CCCSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3344456899999999999999999875
No 394
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.53 E-value=0.0015 Score=44.69 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-++++|+.|+|||||++.+++..
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998754
No 395
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.52 E-value=0.0016 Score=48.73 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=23.0
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
..++++++|.+|||||||++++....
T Consensus 119 ~~~~v~~vG~~nvGKSsliN~l~~~~ 144 (282)
T 1puj_A 119 RAIRALIIGIPNVGKSTLINRLAKKN 144 (282)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEecCCCchHHHHHHHhcCc
Confidence 34789999999999999999998764
No 396
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.50 E-value=0.0016 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=21.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-.++++|++|+||||+++.+.+.-
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 368999999999999999998753
No 397
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.47 E-value=0.0017 Score=45.27 Aligned_cols=21 Identities=43% Similarity=0.662 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
-++++|++|+||||+++.+..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhc
Confidence 478999999999999999975
No 398
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.47 E-value=0.0017 Score=44.59 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
-|++.|.+|+||||+.+.+..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 589999999999999999986
No 399
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.46 E-value=0.0017 Score=45.80 Aligned_cols=22 Identities=23% Similarity=0.511 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
--++++|++|+||||+++.+.+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 400
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.46 E-value=0.0015 Score=45.33 Aligned_cols=22 Identities=18% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
.++++|++|+|||+|+..+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 6899999999999999988763
No 401
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.45 E-value=0.0019 Score=45.47 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.|+++|.+|+||||+.+.+..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999874
No 402
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.43 E-value=0.0014 Score=45.35 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-.++++|++|+|||+|++.+++.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988754
No 403
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.43 E-value=0.0016 Score=50.48 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKF 111 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~ 111 (173)
.++++|++|||||||++.+++...
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCccHHHHHHHHhcccc
Confidence 689999999999999999997643
No 404
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.43 E-value=0.0014 Score=46.26 Aligned_cols=21 Identities=33% Similarity=0.583 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhHHhhh
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTE 37 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~ 37 (173)
.++++|++|+|||+|++.+..
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~ 26 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQ 26 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999987765
No 405
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.42 E-value=0.0018 Score=44.06 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=17.9
Q ss_pred EEEEEeCCCCChHHHHHHH
Q psy13826 88 KYIIIGDMGVGKSCLLHQF 106 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~ 106 (173)
-|++.|.+|+||||+.+.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5889999999999999998
No 406
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=96.40 E-value=0.0013 Score=52.09 Aligned_cols=28 Identities=21% Similarity=0.387 Sum_probs=23.2
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
...+||+++|+.++|||||+++++.+.+
T Consensus 32 ~~~~kI~IvG~~~vGKSTLin~L~~~~~ 59 (423)
T 3qq5_A 32 GFRRYIVVAGRRNVGKSSFMNALVGQNV 59 (423)
T ss_dssp CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4568999999999999999999998876
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.40 E-value=0.0016 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999998864
No 408
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.39 E-value=0.0022 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
+|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 409
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.38 E-value=0.0022 Score=45.63 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
+|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 410
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.38 E-value=0.0021 Score=46.84 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHH
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFT 107 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~ 107 (173)
-.++++|++|+||||+++.++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 411
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.38 E-value=0.0021 Score=44.21 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-|++.|.+|+||||+.+.+...
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 5899999999999999999863
No 412
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.38 E-value=0.0018 Score=46.75 Aligned_cols=22 Identities=41% Similarity=0.368 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998864
No 413
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.37 E-value=0.0019 Score=45.52 Aligned_cols=22 Identities=36% Similarity=0.646 Sum_probs=19.6
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|++|+|||||++.+++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 4789999999999999998863
No 414
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.36 E-value=0.0021 Score=45.24 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
..|++.|.+|+||||+++.+...
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36999999999999999998753
No 415
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=96.35 E-value=0.00089 Score=54.65 Aligned_cols=31 Identities=19% Similarity=0.199 Sum_probs=25.9
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhcccccCcc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQ 45 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~~~~~~~~ 45 (173)
..+|+++|++++|||||+.++....+...+.
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~ 34 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEA 34 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccccC
Confidence 3589999999999999999999877754433
No 416
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.34 E-value=0.0026 Score=44.10 Aligned_cols=21 Identities=43% Similarity=0.518 Sum_probs=19.1
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.|++.|.+|+||||+++.+..
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~ 23 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKE 23 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998875
No 417
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.33 E-value=0.0024 Score=43.87 Aligned_cols=22 Identities=27% Similarity=0.570 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
-.++++|.+|+||||+++.+..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999998874
No 418
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.32 E-value=0.0023 Score=43.89 Aligned_cols=23 Identities=26% Similarity=0.624 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-.+++.|++|+|||++++.++..
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999988754
No 419
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.31 E-value=0.0023 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.513 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 420
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.30 E-value=0.003 Score=44.87 Aligned_cols=22 Identities=23% Similarity=0.385 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
-++++|++|+|||+++..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 5889999999999999988754
No 421
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.30 E-value=0.0024 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|++|+|||||++.+++.
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 422
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.28 E-value=0.0027 Score=43.89 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|+++|.+|+||||+.+.+..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999875
No 423
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.28 E-value=0.0028 Score=44.62 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
.+|+++|.+|+||||+++.+.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3689999999999999999886
No 424
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.28 E-value=0.0025 Score=44.96 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
--|+++|++|+||||+++.+.+.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 425
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.28 E-value=0.0028 Score=44.38 Aligned_cols=21 Identities=33% Similarity=0.610 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.|++.|.+|+||||+++.+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 589999999999999999876
No 426
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.27 E-value=0.0028 Score=45.28 Aligned_cols=22 Identities=18% Similarity=0.448 Sum_probs=19.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.|+++|+||+||+|...+++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999988753
No 427
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=96.27 E-value=0.0029 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
..+||+++|++++|||||+++++..
T Consensus 7 ~~~~I~vvG~~~~GKSTLi~~L~~~ 31 (403)
T 3sjy_A 7 PEVNIGVVGHVDHGKTTLVQAITGI 31 (403)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCc
Confidence 4579999999999999999999874
No 428
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.26 E-value=0.0016 Score=51.07 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.1
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..+++.++|.+|||||||+++++...+
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~~~ 47 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNSQA 47 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence 456899999999999999999998765
No 429
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.26 E-value=0.0032 Score=44.54 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
..+.++|+.|+|||||++.+.+-
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988763
No 430
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=96.26 E-value=0.0027 Score=47.94 Aligned_cols=24 Identities=33% Similarity=0.335 Sum_probs=20.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhCCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQKF 111 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~~ 111 (173)
.++++|++|||||||++.+.+..-
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred eEEEECCCCCcHHHHHHHhccccc
Confidence 568999999999999999987643
No 431
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.23 E-value=0.0023 Score=47.42 Aligned_cols=22 Identities=36% Similarity=0.407 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|+.|+|||||++.+++-
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 432
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.21 E-value=0.0091 Score=46.26 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEEeCCCCChHHHHHHHHhCC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-++++|++|+|||||++.+++-.
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 47899999999999999999854
No 433
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.21 E-value=0.0026 Score=45.52 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 434
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.20 E-value=0.003 Score=43.83 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+.+.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999875
No 435
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=96.19 E-value=0.0044 Score=48.93 Aligned_cols=25 Identities=20% Similarity=0.493 Sum_probs=22.0
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
...++++|++|+|||||++.+++-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCC
Confidence 3479999999999999999999843
No 436
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.19 E-value=0.0026 Score=42.99 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|++|+|||+|++.+++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999998864
No 437
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.19 E-value=0.003 Score=43.73 Aligned_cols=22 Identities=18% Similarity=0.209 Sum_probs=19.6
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+++.+..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999998864
No 438
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.19 E-value=0.0025 Score=45.78 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 439
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.19 E-value=0.0028 Score=46.23 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
No 440
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.18 E-value=0.0028 Score=45.84 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=18.4
Q ss_pred EEEEEeCCCCChHHHHHHHH
Q psy13826 88 KYIIIGDMGVGKSCLLHQFT 107 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~ 107 (173)
-++++|++|+|||||++.++
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 47899999999999999887
No 441
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.18 E-value=0.003 Score=47.87 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.++|+|++|+|||||++.+++
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~g 148 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIH 148 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhh
Confidence 689999999999999998874
No 442
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.17 E-value=0.0025 Score=47.58 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|+.|+|||||++.+++-
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.17 E-value=0.0033 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.350 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|+++|++|+||||+++.+..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999998875
No 444
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.17 E-value=0.0026 Score=46.95 Aligned_cols=22 Identities=41% Similarity=0.525 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|+.|+|||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 445
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.16 E-value=0.0029 Score=46.42 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998875
No 446
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.16 E-value=0.0034 Score=43.63 Aligned_cols=22 Identities=23% Similarity=0.412 Sum_probs=19.6
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
.++++|++|+|||+++..+...
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 5899999999999999888764
No 447
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.16 E-value=0.0031 Score=43.90 Aligned_cols=21 Identities=48% Similarity=0.795 Sum_probs=18.4
Q ss_pred EEEEEcCCCCchhhhhHHhhh
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTE 37 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~ 37 (173)
+++++|++|+|||+|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g 22 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVE 22 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999976664
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.14 E-value=0.0036 Score=44.52 Aligned_cols=21 Identities=24% Similarity=0.347 Sum_probs=19.3
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
+|++.|.+|+||||+++.+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999875
No 449
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.14 E-value=0.0034 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-++++|.+|+|||||+++++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5789999999999999998864
No 450
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.14 E-value=0.003 Score=46.19 Aligned_cols=22 Identities=23% Similarity=0.283 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999875
No 451
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.14 E-value=0.0031 Score=46.29 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
No 452
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.13 E-value=0.0031 Score=46.95 Aligned_cols=21 Identities=24% Similarity=0.479 Sum_probs=19.7
Q ss_pred EEEEeCCCCChHHHHHHHHhC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~ 109 (173)
++++|++|+|||+|++.+++.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999874
No 453
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.13 E-value=0.0044 Score=42.83 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999874
No 454
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.12 E-value=0.0032 Score=43.29 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.2
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
+|+++|.+|+||||+.+.+..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999875
No 455
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.12 E-value=0.0031 Score=47.67 Aligned_cols=19 Identities=47% Similarity=0.784 Sum_probs=0.0
Q ss_pred EEEEeCCCCChHHHHHHHH
Q psy13826 89 YIIIGDMGVGKSCLLHQFT 107 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~ 107 (173)
++++|++|||||||++.+.
T Consensus 168 ~~l~G~sG~GKSTLln~l~ 186 (302)
T 2yv5_A 168 CILAGPSGVGKSSILSRLT 186 (302)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 456
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.12 E-value=0.0028 Score=46.24 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 457
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.12 E-value=0.0028 Score=47.01 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEcCCCCcHHHHHHHHHcC
Confidence 4789999999999999998874
No 458
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.12 E-value=0.0028 Score=47.09 Aligned_cols=22 Identities=45% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcC
Confidence 4789999999999999999875
No 459
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.11 E-value=0.0032 Score=46.74 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999885
No 460
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.11 E-value=0.0039 Score=44.93 Aligned_cols=22 Identities=32% Similarity=0.575 Sum_probs=19.4
Q ss_pred EEEEEcCCCCchhhhhHHhhhc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
-++++|++|+|||+|+..+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 6889999999999999987754
No 461
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=96.11 E-value=0.0021 Score=50.07 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 16 FKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 16 ~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
++|+++|.+|||||+|+++++...
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999999764
No 462
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=96.11 E-value=0.002 Score=46.42 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=14.9
Q ss_pred EEEEEeCCCCChHHHHHHHH-hC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFT-EQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~-~~ 109 (173)
-++++|++|+||||+++.++ +.
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58899999999999999998 53
No 463
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.10 E-value=0.0036 Score=51.25 Aligned_cols=29 Identities=17% Similarity=0.230 Sum_probs=26.0
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcccc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~~~ 41 (173)
+...+|+++|.+|+|||||+++++...+.
T Consensus 63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~ 91 (550)
T 2qpt_A 63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP 91 (550)
T ss_dssp SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence 45679999999999999999999998873
No 464
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.10 E-value=0.0042 Score=43.77 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=20.1
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
+.|.++|.+|+||||+.+.+.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 465
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.09 E-value=0.003 Score=45.81 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999875
No 466
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.09 E-value=0.0033 Score=45.87 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=19.6
Q ss_pred EEEEeCCCCChHHHHHHHHhC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~ 109 (173)
++++|++|+|||+|++.+++.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999864
No 467
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.07 E-value=0.0035 Score=46.36 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.4
Q ss_pred EEEEEeCCCCChHHHHHHHHh
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~ 108 (173)
.++++|+.|+||||+++.+++
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHH
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999999999999876
No 468
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.07 E-value=0.0043 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.9
Q ss_pred eeEEEEEeCCCCChHHHHHHHHh
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
...|++.|.+|+||||+++++..
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999974
No 469
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=96.06 E-value=0.0019 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.332 Sum_probs=21.6
Q ss_pred EEEEEcCCCCchhhhhHHhhhccc
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
+|+++|.++||||||+++++..++
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~ 183 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKP 183 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECC
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCC
Confidence 588999999999999999997764
No 470
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.06 E-value=0.0031 Score=46.93 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 471
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.06 E-value=0.0031 Score=46.35 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 4789999999999999998875
No 472
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.06 E-value=0.0058 Score=43.15 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.8
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHhC
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
....|+++|.+|+||||+++.+...
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 3467999999999999999999864
No 473
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.05 E-value=0.0033 Score=43.79 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=18.4
Q ss_pred EEEEcCCCCchhhhhHHhhhc
Q psy13826 18 YIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 18 ~~~~g~~~vgkt~l~~~~~~~ 38 (173)
++++|++|+|||+|+..+...
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhh
Confidence 789999999999999888753
No 474
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.04 E-value=0.0032 Score=46.48 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999875
No 475
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.03 E-value=0.0036 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.1
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 5889999999999999999874
No 476
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.03 E-value=0.005 Score=46.76 Aligned_cols=33 Identities=18% Similarity=0.283 Sum_probs=21.0
Q ss_pred CCCCCCCCCCCcceeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826 1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 1 ~~~~~~~~~~~~~~~~k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
|+.|++..++ .-++++|++|+|||+|..++...
T Consensus 1 ~~~~~~~~~~-----~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 1 MSDISKASLP-----KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp ------CCCC-----EEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCccccCCCC-----cEEEEECCCccCHHHHHHHHHHh
Confidence 7777665432 24788999999999999988754
No 477
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.02 E-value=0.0011 Score=50.44 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEEEeCCCCChHHHHHHHHhCC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQK 110 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~~ 110 (173)
-.++++|++|||||||++.+.+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC--
T ss_pred CEEEEECCCCCCHHHHHHHhcccc
Confidence 378999999999999999998754
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.01 E-value=0.0037 Score=46.76 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999999875
No 479
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.01 E-value=0.0031 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.4
Q ss_pred eeEEEEEeCCCCChHHHHHHHHhC
Q psy13826 86 IFKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 86 ~~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.-+++++|++|+|||||++.+++-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999998864
No 480
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=96.01 E-value=0.0026 Score=51.16 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=22.8
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
..+||+++|++++|||||+.+++.+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~ 56 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYD 56 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 4689999999999999999999865
No 481
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.98 E-value=0.0048 Score=42.89 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
..|+++|.+|+||||+.+.+...
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 47999999999999999998764
No 482
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=95.98 E-value=0.01 Score=46.57 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=22.1
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhh
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFT 36 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~ 36 (173)
...++|+++|..++|||||+.+++
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~ 31 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALT 31 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456899999999999999999998
No 483
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.97 E-value=0.0046 Score=44.13 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.9
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|+++|.+|+||||+.+.+..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998865
No 484
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.96 E-value=0.0041 Score=47.24 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=21.6
Q ss_pred ceeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 84 SYIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 84 ~~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
....-+.|+|++|+|||||++.+.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHh
Confidence 3456789999999999999998876
No 485
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.96 E-value=0.0049 Score=44.24 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+++.+..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999874
No 486
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.95 E-value=0.0033 Score=43.03 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-.+++.|++|+|||++++.+...
T Consensus 44 ~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 44 NNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CEEEEESCGGGCHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHH
Confidence 35799999999999999988754
No 487
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=95.95 E-value=0.0037 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.474 Sum_probs=20.0
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999875
No 488
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.94 E-value=0.0053 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.190 Sum_probs=20.0
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 4699999999999999999875
No 489
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=95.94 E-value=0.0038 Score=46.29 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|+.|+|||||++.+++-
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5789999999999999998865
No 490
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=95.93 E-value=0.0036 Score=51.87 Aligned_cols=25 Identities=20% Similarity=0.494 Sum_probs=22.6
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
..+||+++|++++|||||+++++..
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~ 190 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYD 190 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCHHHHHHHHHHh
Confidence 4679999999999999999999855
No 491
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.92 E-value=0.0072 Score=45.26 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=21.0
Q ss_pred eeeEEEEEeCCCCChHHHHHHHHh
Q psy13826 85 YIFKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 85 ~~~ki~l~G~~~vGKssl~~~~~~ 108 (173)
...-|++.|++|+||||+++.+..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999975
No 492
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.92 E-value=0.0046 Score=44.21 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.2
Q ss_pred eEEEEEeCCCCChHHHHHHHHhC
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~~ 109 (173)
-.+++.|++|+|||++++.+...
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~ 75 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACAR 75 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999988753
No 493
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.92 E-value=0.0052 Score=42.44 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.9
Q ss_pred EEEEEcCCCCchhhhhHHhhh
Q psy13826 17 KYIIIGDMGVGKSCLLHQFTE 37 (173)
Q Consensus 17 k~~~~g~~~vgkt~l~~~~~~ 37 (173)
.|+++|.+|+|||++...+..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999988864
No 494
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.91 E-value=0.0056 Score=42.39 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.5
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+.+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 495
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=95.91 E-value=0.0043 Score=47.42 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEeCCCCChHHHHHHHHhC
Q psy13826 88 KYIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 88 ki~l~G~~~vGKssl~~~~~~~ 109 (173)
.++++|++|+|||+|++.+++.
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999999999864
No 496
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.91 E-value=0.0048 Score=42.50 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=19.8
Q ss_pred eEEEEEeCCCCChHHHHHHHHh
Q psy13826 87 FKYIIIGDMGVGKSCLLHQFTE 108 (173)
Q Consensus 87 ~ki~l~G~~~vGKssl~~~~~~ 108 (173)
..|++.|.+|+||||+++.+..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999874
No 497
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.89 E-value=0.0058 Score=48.45 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=23.8
Q ss_pred ceeeEEEEEcCCCCchhhhhHHhhhcc
Q psy13826 13 SYIFKYIIIGDMGVGKSCLLHQFTEQK 39 (173)
Q Consensus 13 ~~~~k~~~~g~~~vgkt~l~~~~~~~~ 39 (173)
...+||+++|+.++|||||+.+++.+.
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~ 48 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDS 48 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhc
Confidence 456899999999999999999998654
No 498
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=95.89 E-value=0.0048 Score=51.90 Aligned_cols=27 Identities=30% Similarity=0.637 Sum_probs=24.4
Q ss_pred eeeEEEEEcCCCCchhhhhHHhhhccc
Q psy13826 14 YIFKYIIIGDMGVGKSCLLHQFTEQKY 40 (173)
Q Consensus 14 ~~~k~~~~g~~~vgkt~l~~~~~~~~~ 40 (173)
..++|+++|++++|||||+++++...+
T Consensus 68 ~~~~V~VvG~~naGKSSLlNaLlg~~~ 94 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKSTFLNALIGENL 94 (695)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 457999999999999999999998765
No 499
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.88 E-value=0.0048 Score=47.57 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=21.6
Q ss_pred eeEEEEEcCCCCchhhhhHHhhhc
Q psy13826 15 IFKYIIIGDMGVGKSCLLHQFTEQ 38 (173)
Q Consensus 15 ~~k~~~~g~~~vgkt~l~~~~~~~ 38 (173)
...|.++|.+|+|||||+++++..
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999863
No 500
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.88 E-value=0.0051 Score=44.28 Aligned_cols=21 Identities=19% Similarity=0.474 Sum_probs=18.0
Q ss_pred EEEEeCCCCChHHHHHHHHhC
Q psy13826 89 YIIIGDMGVGKSCLLHQFTEQ 109 (173)
Q Consensus 89 i~l~G~~~vGKssl~~~~~~~ 109 (173)
|+++|+||+||+|.+.+++..
T Consensus 32 I~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 567899999999999988753
Done!