RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13826
(173 letters)
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 112 bits (281), Expect = 2e-32
Identities = 47/90 (52%), Positives = 67/90 (74%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
Y Y+FK ++IG+ GVGKSCLL +F++ + D TIGV+F + +E+ G+ +KLQIWDT
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDT 62
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
AGQERFR +T SYYRG+ G ++V DV+ +
Sbjct: 63 AGQERFRTITSSYYRGSHGIIIVYDVTDQE 92
Score = 47.2 bits (111), Expect = 1e-07
Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 7/138 (5%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
Y Y+FK ++IG+ GVGKSCLL +F++ Y T T K +W
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIW-- 60
Query: 72 VSKMSSSGQYSYSYIFK-YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
++GQ + I Y + + Q + T + +
Sbjct: 61 ----DTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLL 116
Query: 131 HGEKIKLQIWDTAGQERF 148
G K L+ +
Sbjct: 117 VGNKCDLKDKRVVEYDVA 134
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 111 bits (278), Expect = 3e-32
Identities = 48/89 (53%), Positives = 68/89 (76%)
Query: 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
+Y Y+FK ++IGD GVGK+C+L +F+E F TIG++F R IE+ G++IKLQIWD
Sbjct: 2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWD 61
Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSH 170
TAGQERFR +T +YYRGA G ++V D+++
Sbjct: 62 TAGQERFRTITTAYYRGAMGIMLVYDITN 90
Score = 47.1 bits (111), Expect = 1e-07
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
+Y Y+FK ++IGD GVGK+C+L +F+E +
Sbjct: 2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAF 31
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 110 bits (275), Expect = 9e-32
Identities = 47/87 (54%), Positives = 66/87 (75%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
I K ++IGD GVGKSCLL +F E KF P TIG++F + ++++G+K+KLQIWDTAGQ
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ 61
Query: 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172
ERFR +T +YYRGA G ++V D++ +
Sbjct: 62 ERFRTITTAYYRGAMGIILVYDITDER 88
Score = 40.9 bits (95), Expect = 1e-05
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
I K ++IGD GVGKSCLL +F E K+
Sbjct: 2 IMKILLIGDSGVGKSCLLVRFVEDKF 27
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 107 bits (267), Expect = 1e-30
Identities = 45/88 (51%), Positives = 67/88 (76%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
Y ++FK ++IG+ GVGK+CL+ +FT+ F P TIGV+F + +E++GEK+KLQIWDT
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDT 61
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
AGQERFR++T+SYYR A ++ D++
Sbjct: 62 AGQERFRSITQSYYRSANALILTYDITC 89
Score = 46.7 bits (110), Expect = 1e-07
Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 6/119 (5%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
Y ++FK ++IG+ GVGK+CL+ +FT+ + G T + K +W
Sbjct: 2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIW-- 59
Query: 72 VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
++GQ + I + + + + + +P+ I ++I V
Sbjct: 60 ----DTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITV 114
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 101 bits (253), Expect = 2e-28
Identities = 38/90 (42%), Positives = 63/90 (70%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
+ Y+FK +IIG+ VGK+ L ++ + F P T+G++F + I + ++IKLQIWDT
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDT 61
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
AGQER+R +T +YYRGA G +++ D+++ +
Sbjct: 62 AGQERYRTITTAYYRGAMGFILMYDITNEE 91
Score = 44.9 bits (105), Expect = 6e-07
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
+ Y+FK +IIG+ VGK+ L ++ + +
Sbjct: 2 FDYMFKILIIGNSSVGKTSFLFRYADDSF 30
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 97.6 bits (242), Expect = 7e-27
Identities = 42/92 (45%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
Query: 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDC-PHTIGVEFGTRIIEVHGEKIKLQIW 140
Y FK +++GD GVGK+CLL +F + F+ T+G++F ++++V G K+KLQ+W
Sbjct: 2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMW 61
Query: 141 DTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
DTAGQERFR+VT +YYR A L++ DV++
Sbjct: 62 DTAGQERFRSVTHAYYRDAHALLLLYDVTNKA 93
Score = 45.6 bits (107), Expect = 3e-07
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYF 41
Y FK +++GD GVGK+CLL +F + +
Sbjct: 2 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFL 32
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 95.4 bits (236), Expect = 7e-26
Identities = 60/89 (67%), Positives = 76/89 (85%)
Query: 82 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWD 141
+Y ++FK+++IG+ G GKSCLLHQF E+KF D HTIGVEFG++II V G+ +KLQIWD
Sbjct: 1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWD 60
Query: 142 TAGQERFRAVTRSYYRGAAGALMVIDVSH 170
TAGQERFR+VTRSYYRGAAGAL+V D++
Sbjct: 61 TAGQERFRSVTRSYYRGAAGALLVYDITS 89
Score = 48.0 bits (113), Expect = 6e-08
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLW 69
+Y ++FK+++IG+ G GKSCLLHQF E+K+ T + K +W
Sbjct: 1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIW 59
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 94.9 bits (235), Expect = 1e-25
Identities = 48/83 (57%), Positives = 59/83 (71%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +IIG+ GVGKS LL +FT+ F P+ TIGV+F + I V G K KL IWDTAGQE
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE 67
Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
RFR +T SYYRGA G ++V DV+
Sbjct: 68 RFRTLTPSYYRGAQGVILVYDVT 90
Score = 42.9 bits (100), Expect = 3e-06
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 6/82 (7%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
K +IIG+ GVGKS LL +FT+ + L T + K +W
Sbjct: 8 LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW------ 61
Query: 76 SSSGQYSYSYIFKYIIIGDMGV 97
++GQ + + G GV
Sbjct: 62 DTAGQERFRTLTPSYYRGAQGV 83
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 90.7 bits (224), Expect = 6e-24
Identities = 36/98 (36%), Positives = 62/98 (63%), Gaps = 10/98 (10%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE--------- 133
Y Y+ K + +GD GVGK+ L+++T+ KF P T+G++F + + + +
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 134 -KIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
K+ LQ+WDTAGQERFR++T +++R A G L++ D++
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTS 99
Score = 45.6 bits (107), Expect = 4e-07
Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 4/143 (2%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLT--QDYVCLRLVSTSQPITRKNLLW 69
Y Y+ K + +GD GVGK+ L+++T+ K+ T D+ R+V +Q +
Sbjct: 2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKA 61
Query: 70 ALVS--KMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI 127
V ++GQ + + MG L + + +
Sbjct: 62 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCEN 121
Query: 128 IEVHGEKIKLQIWDTAGQERFRA 150
++ K + D +A
Sbjct: 122 PDIVLIGNKADLPDQREVNERQA 144
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 89.6 bits (221), Expect = 9e-24
Identities = 80/87 (91%), Positives = 84/87 (96%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
YSYIFKYIIIGDMGVGKSCLLHQFTE+KFM DCPHTIGVEFGTRIIEV G+KIKLQIWDT
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDT 60
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVS 169
AGQERFRAVTRSYYRGAAGALMV D++
Sbjct: 61 AGQERFRAVTRSYYRGAAGALMVYDIT 87
Score = 47.6 bits (112), Expect = 6e-08
Identities = 34/108 (31%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
YSYIFKYIIIGDMGVGKSCLLHQFTE+K+ T + K +W
Sbjct: 1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIW-- 58
Query: 72 VSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
++GQ + + + G G + + + +
Sbjct: 59 ----DTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDA 102
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 86.5 bits (213), Expect = 2e-22
Identities = 52/86 (60%), Positives = 65/86 (75%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
Y Y+FK ++IGD GVGKS LL +FT +F + TIGVEF TR I+V G+ IK QIWDT
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDT 60
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDV 168
AGQER+R +T +YYRGA GAL+V D+
Sbjct: 61 AGQERYRRITSAYYRGAVGALLVYDI 86
Score = 46.0 bits (108), Expect = 2e-07
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWAL 71
Y Y+FK ++IGD GVGKS LL +FT ++ + V + + +
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEF------NLESKSTIGVEFATRSIQVDGKTIK 54
Query: 72 VSKMSSSGQYSYSYIFKYIIIGDMG 96
++GQ Y I G +G
Sbjct: 55 AQIWDTAGQERYRRITSAYYRGAVG 79
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 78.4 bits (192), Expect = 2e-19
Identities = 60/85 (70%), Positives = 73/85 (85%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
SY+FKYIIIGD GVGKSCLL QFT+++F P TIGVEFG R++ + G++IKLQIWDTA
Sbjct: 1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60
Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
GQE FR++TRSYYRGAAGAL+V D+
Sbjct: 61 GQESFRSITRSYYRGAAGALLVYDI 85
Score = 48.0 bits (113), Expect = 5e-08
Identities = 27/80 (33%), Positives = 36/80 (45%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
SY+FKYIIIGD GVGKSCLL QFT++++ LT + K +W
Sbjct: 1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA 60
Query: 73 SKMSSSGQYSYSYIFKYIII 92
+ S Y +
Sbjct: 61 GQESFRSITRSYYRGAAGAL 80
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 74.3 bits (181), Expect = 6e-18
Identities = 33/86 (38%), Positives = 55/86 (63%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
FK +++G+ VGKS L+ +F + +F TIG F T+ + + +K +IWDTAGQE
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE 66
Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
R+ ++ YYRGA A++V D+++ +
Sbjct: 67 RYHSLAPMYYRGAQAAIVVYDITNEE 92
Score = 39.6 bits (91), Expect = 5e-05
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
FK +++G+ VGKS L+ +F + ++
Sbjct: 7 FKLVLLGESAVGKSSLVLRFVKGQF 31
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 74.2 bits (181), Expect = 8e-18
Identities = 35/89 (39%), Positives = 57/89 (64%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
+Y FK +++G+ VGK+ L+ ++ E KF T+G F T+ + + G+++ L IWDTA
Sbjct: 1 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTA 60
Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSHVK 172
GQERF A+ YYR + GA++V D++
Sbjct: 61 GQERFHALGPIYYRDSNGAILVYDITDED 89
Score = 46.5 bits (109), Expect = 2e-07
Identities = 14/85 (16%), Positives = 32/85 (37%), Gaps = 6/85 (7%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
+Y FK +++G+ VGK+ L+ ++ E K+ ++ S +
Sbjct: 1 AYSFKVVLLGEGCVGKTSLVLRYCENKF------NDKHITTLGASFLTKKLNIGGKRVNL 54
Query: 73 SKMSSSGQYSYSYIFKYIIIGDMGV 97
+ ++GQ + + G
Sbjct: 55 AIWDTAGQERFHALGPIYYRDSNGA 79
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 73.5 bits (179), Expect = 1e-17
Identities = 33/84 (39%), Positives = 55/84 (65%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
FK + +G+ VGK+ L+ +F F TIG++F ++ + + I+LQ+WDTAGQE
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
RFR++ SY R +A A++V D+++
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITN 84
Score = 43.4 bits (101), Expect = 2e-06
Identities = 16/94 (17%), Positives = 29/94 (30%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
FK + +G+ VGK+ L+ +F + Q T L + T + LW +
Sbjct: 1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQE 60
Query: 76 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQ 109
+ + Q T+
Sbjct: 61 RFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 94
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 73.1 bits (178), Expect = 2e-17
Identities = 41/87 (47%), Positives = 57/87 (65%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
S +FK I++GD GVGKS L++++ KF HTIGVEF + +EV G + +QIWDTA
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA 63
Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSH 170
GQERFR++ +YRG+ L+ V
Sbjct: 64 GQERFRSLRTPFYRGSDCCLLTFSVDD 90
Score = 49.2 bits (116), Expect = 2e-08
Identities = 20/107 (18%), Positives = 38/107 (35%), Gaps = 6/107 (5%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALV 72
S +FK I++GD GVGKS L++++ K+ L T L +W
Sbjct: 4 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIW--- 60
Query: 73 SKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
++GQ + + G + + + + +
Sbjct: 61 ---DTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEF 104
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 184
Score = 68.6 bits (166), Expect = 2e-15
Identities = 37/85 (43%), Positives = 57/85 (67%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
+ K II+GD GVGK+ L++Q+ +KF TIG +F T+ + V + +QIWDTAGQ
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQ 61
Query: 146 ERFRAVTRSYYRGAAGALMVIDVSH 170
ERF+++ ++YRGA ++V DV+
Sbjct: 62 ERFQSLGVAFYRGADCCVLVFDVTA 86
Score = 42.4 bits (98), Expect = 6e-06
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
+ K II+GD GVGK+ L++Q+ +K+
Sbjct: 2 LLKVIILGDSGVGKTSLMNQYVNKKF 27
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 64.7 bits (156), Expect = 3e-14
Identities = 39/88 (44%), Positives = 60/88 (68%), Gaps = 1/88 (1%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
IFK I+IGD VGK+CL ++F +F TIGV+F R +++ GE+IK+Q+WDTAGQ
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 146 ERF-RAVTRSYYRGAAGALMVIDVSHVK 172
ERF +++ + YYR + V D++++
Sbjct: 62 ERFRKSMVQHYYRNVHAVVFVYDMTNMA 89
Score = 41.9 bits (97), Expect = 6e-06
Identities = 18/75 (24%), Positives = 26/75 (34%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSK 74
IFK I+IGD VGK+CL ++F ++ + T K LW +
Sbjct: 2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ 61
Query: 75 MSSSGQYSYSYIFKY 89
Y
Sbjct: 62 ERFRKSMVQHYYRNV 76
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 65.0 bits (157), Expect = 3e-14
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 75 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
M+ + + K +++GD VGK+CLL + F + T+ + + V G++
Sbjct: 1 MAHG---PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV-FDHYAVSVTVGGKQ 56
Query: 135 IKLQIWDTAGQERFRAVTRSYYR 157
L ++DTAGQE + + Y
Sbjct: 57 YLLGLYDTAGQEDYDRLRPLSYP 79
Score = 46.5 bits (109), Expect = 2e-07
Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 4 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLV 56
M+ + + K +++GD VGK+CLL + + T V
Sbjct: 1 MAHG---PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSV 50
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 65.5 bits (159), Expect = 4e-14
Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 8/88 (9%)
Query: 83 YSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
Y + +++G GKS ++ Q + T G+ + +K+ ++D
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHVVL----TSGIF----ETKFQVDKVNFHMFDV 54
Query: 143 AGQERFRAVTRSYYRGAAGALMVIDVSH 170
GQ R + + V+ S
Sbjct: 55 GGQRDERRKWIQCFNDVTAIIFVVASSS 82
Score = 40.9 bits (95), Expect = 2e-05
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 12 YSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
Y + +++G GKS ++ Q
Sbjct: 3 YRATHRLLLLGAGESGKSTIVKQMRILHV 31
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 63.5 bits (153), Expect = 8e-14
Identities = 33/85 (38%), Positives = 52/85 (61%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
K +++G+ VGKS ++ +F F + TIG F T+ + ++ +K +IWDTAGQER
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 148 FRAVTRSYYRGAAGALMVIDVSHVK 172
F ++ YYR A AL+V DV+ +
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQ 89
Score = 39.7 bits (91), Expect = 4e-05
Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 2/105 (1%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVS--K 74
K +++G+ VGKS ++ +F + + T L T T K +W +
Sbjct: 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQER 64
Query: 75 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
+S Y +++ D+ +S + + ++ I
Sbjct: 65 FASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI 109
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 63.5 bits (153), Expect = 9e-14
Identities = 38/86 (44%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI-KLQIWDTAG 144
I K II+GD GVGK+ L+H++ K+ TIG +F T+ + V G+K+ +Q+WDTAG
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAG 61
Query: 145 QERFRAVTRSYYRGAAGALMVIDVSH 170
QERF+++ ++YRGA ++V DV++
Sbjct: 62 QERFQSLGVAFYRGADCCVLVYDVTN 87
Score = 41.2 bits (95), Expect = 1e-05
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
I K II+GD GVGK+ L+H++ KY
Sbjct: 2 ILKVIILGDSGVGKTSLMHRYVNDKY 27
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 63.1 bits (152), Expect = 2e-13
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +++GD VGK+CLL +T KF + T+ + + + GE L ++DTAGQE
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF-DNYAVTVMIGGEPYTLGLFDTAGQE 62
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
+ + Y L+ V
Sbjct: 63 DYDRLRPLSYPQTDVFLVCFSVVS 86
Score = 40.4 bits (93), Expect = 3e-05
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K +++GD VGK+CLL +T K+
Sbjct: 4 IKCVVVGDGAVGKTCLLISYTTNKF 28
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 61.2 bits (147), Expect = 5e-13
Identities = 38/86 (44%), Positives = 54/86 (62%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K ++GD GVGKS ++ +F E F P+ TIG F T+ ++ E K IWDTAG E
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE 64
Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
RFRA+ YYRG+A A++V D++ +
Sbjct: 65 RFRALAPMYYRGSAAAIIVYDITKEE 90
Score = 39.2 bits (90), Expect = 6e-05
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K ++GD GVGKS ++ +F E +
Sbjct: 5 LKVCLLGDTGVGKSSIMWRFVEDSF 29
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 61.2 bits (147), Expect = 5e-13
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
+ +++G GK+ +L++ + T G + V + I +WD GQ++
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI-----VTTIPTIGFNVETVEYKNISFTVWDVGGQDK 56
Query: 148 FRAVTRSYYRGAAGALMVIDV 168
R + R Y++ G + V+D
Sbjct: 57 IRPLWRHYFQNTQGLIFVVDS 77
Score = 36.9 bits (84), Expect = 3e-04
Identities = 4/24 (16%), Positives = 13/24 (54%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
+ +++G GK+ +L++ +
Sbjct: 2 RILMVGLDAAGKTTILYKLKLGEI 25
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 60.3 bits (145), Expect = 1e-12
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+K +++G GVGKS L QF F+ TI +F + IEV L+I DTAG E
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTE 62
Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
+F ++ Y + G ++V +
Sbjct: 63 QFASMRDLYIKNGQGFILVYSL 84
Score = 41.1 bits (95), Expect = 1e-05
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+K +++G GVGKS L QF +
Sbjct: 4 YKVVVLGSGGVGKSALTVQFVTGTF 28
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 60.1 bits (144), Expect = 1e-12
Identities = 34/82 (41%), Positives = 55/82 (67%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
K +++G+ VGKS ++ ++ + F D TIGV+F R I+V+ E ++L +WDTAGQE
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 148 FRAVTRSYYRGAAGALMVIDVS 169
F A+T++YYRGA ++V +
Sbjct: 64 FDAITKAYYRGAQACVLVFSTT 85
Score = 38.1 bits (87), Expect = 1e-04
Identities = 11/101 (10%), Positives = 28/101 (27%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMS 76
K +++G+ VGKS ++ ++ + + + T L + +LW +
Sbjct: 4 KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE 63
Query: 77 SSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH 117
Y + + +
Sbjct: 64 FDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV 104
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 60.1 bits (144), Expect = 2e-12
Identities = 32/85 (37%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
S K +++G GVGKS L QF + F+ D + T+I V G +L I DTA
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDP-TIEDSYTKICSVDGIPARLDILDTA 62
Query: 144 GQERFRAVTRSYYRGAAGALMVIDV 168
GQE F A+ Y R G L+V +
Sbjct: 63 GQEEFGAMREQYMRAGHGFLLVFAI 87
Score = 44.7 bits (104), Expect = 9e-07
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
S K +++G GVGKS L QF + +
Sbjct: 4 SETHKLVVVGGGGVGKSALTIQFIQSYF 31
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 60.0 bits (144), Expect = 2e-12
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+K +++G GVGKS L QF + F+ TI + + +EV ++ L+I DTAG E
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVDCQQCMLEILDTAGTE 62
Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
+F A+ Y + G +V +
Sbjct: 63 QFTAMRDLYMKNGQGFALVYSI 84
Score = 40.7 bits (94), Expect = 2e-05
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+K +++G GVGKS L QF + +
Sbjct: 4 YKLVVLGSGGVGKSALTVQFVQGIF 28
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 169
Score = 59.3 bits (142), Expect = 3e-12
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+K +++GD GVGKS L QF ++ F+PD TI + + + L + DTAGQE
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDN-QWAILDVLDTAGQE 63
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
F A+ Y R G L+V V+
Sbjct: 64 EFSAMREQYMRTGDGFLIVYSVTD 87
Score = 41.6 bits (96), Expect = 9e-06
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+K +++GD GVGKS L QF ++ +
Sbjct: 5 YKLVVVGDGGVGKSALTIQFFQKIF 29
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 58.4 bits (140), Expect = 7e-12
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+ +++G GK+ +L++ + + P G + V + +K +WD GQ+
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQSVTTIPTV-----GFNVETVTYKNVKFNVWDVGGQD 67
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
+ R + R YY G G + V+D +
Sbjct: 68 KIRPLWRHYYTGTQGLIFVVDCAD 91
Score = 36.9 bits (84), Expect = 4e-04
Identities = 4/25 (16%), Positives = 13/25 (52%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+ +++G GK+ +L++ +
Sbjct: 13 MRILMLGLDAAGKTTILYKLKLGQS 37
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 58.1 bits (139), Expect = 1e-11
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
++ +++G GVGKS L QF + F+ D TI + T+ + +L I DTAGQE
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCVIDDRAARLDILDTAGQE 64
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
F A+ Y R G L+V V+
Sbjct: 65 EFGAMREQYMRTGEGFLLVFSVTD 88
Score = 41.9 bits (97), Expect = 7e-06
Identities = 21/136 (15%), Positives = 44/136 (32%), Gaps = 5/136 (3%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQ-DYVCLRLVSTSQPITRKNLLWALVSK 74
++ +++G GVGKS L QF + + T D + V + L A +
Sbjct: 6 YRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEE 65
Query: 75 MSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEK 134
+ + ++++ + S KF + I+ +
Sbjct: 66 FGAMREQYMRTGEGFLLVFSVTDRGSFEEI----YKFQRQILRVKDRDEFPMILIGNKAD 121
Query: 135 IKLQIWDTAGQERFRA 150
+ Q T + + A
Sbjct: 122 LDHQRQVTQEEGQQLA 137
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 58.1 bits (139), Expect = 1e-11
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +I+GD GK+CLL ++ +F T+ E IEV G++++L +WDTAG E
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF-ENYVADIEVDGKQVELALWDTAGLE 61
Query: 147 RFRAVTRSYYR 157
+ + Y
Sbjct: 62 DYDRLRPLSYP 72
Score = 40.0 bits (92), Expect = 4e-05
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K +I+GD GK+CLL ++ ++
Sbjct: 3 KKLVIVGDGACGKTCLLIVNSKDQF 27
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 57.7 bits (138), Expect = 2e-11
Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+ +I+G G GK+ +L++ + + P G + + + +KL +WD GQ
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEVVTTKPT-----IGFNVETLSYKNLKLNVWDLGGQT 72
Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
R R YY A + V+D
Sbjct: 73 SIRPYWRCYYADTAAVIFVVDS 94
Score = 34.2 bits (77), Expect = 0.004
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+ +I+G G GK+ +L++ +
Sbjct: 18 LRILILGLDGAGKTTILYRLQIGEV 42
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 57.3 bits (137), Expect = 2e-11
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+K +++G GVGKS L Q + F+ + TI + +++ E L I DTAGQE
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDG-ETCLLDILDTAGQE 62
Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
+ A+ Y R G L V +++ K
Sbjct: 63 EYSAMRDQYMRTGEGFLCVFAINNTK 88
Score = 40.7 bits (94), Expect = 2e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+K +++G GVGKS L Q + +
Sbjct: 4 YKLVVVGAGGVGKSALTIQLIQNHF 28
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 57.3 bits (137), Expect = 2e-11
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +++GD VGK+CLL +T F + T+ + + + V G+ + L +WDTAGQE
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVDGKPVNLGLWDTAGQE 64
Query: 147 RFRAVTRSYYRGAAGALMVIDVSHVK 172
+ + Y +L+ +
Sbjct: 65 DYDRLRPLSYPQTDVSLICFSLVSPA 90
Score = 41.9 bits (97), Expect = 8e-06
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K +++GD VGK+CLL +T +
Sbjct: 6 IKCVVVGDGAVGKTCLLISYTTNAF 30
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 56.5 bits (135), Expect = 4e-11
Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
+ K I++G GVGKS L QF +F+ D T + +++ E I DTAGQ
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQI-DILDTAGQ 62
Query: 146 ERFRAVTRSYYRGAAGALMVIDVSHVK 172
E + A+ +Y+R G L V ++ ++
Sbjct: 63 EDYAAIRDNYFRSGEGFLCVFSITEME 89
Score = 42.6 bits (99), Expect = 3e-06
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
+ K I++G GVGKS L QF ++
Sbjct: 4 LHKVIMVGSGGVGKSALTLQFMYDEF 29
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 56.2 bits (134), Expect = 4e-11
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+ +++G GK+ +L +F + TI G I + KL IWD GQ+
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV-----DTISPTLGFNIKTLEHRGFKLNIWDVGGQK 57
Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
R+ R+Y+ G + V+D +
Sbjct: 58 SLRSYWRNYFESTDGLIWVVDSA 80
Score = 38.1 bits (87), Expect = 2e-04
Identities = 5/25 (20%), Positives = 13/25 (52%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+ +++G GK+ +L +F +
Sbjct: 3 LRLLMLGLDNAGKTTILKKFNGEDV 27
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 55.8 bits (133), Expect = 1e-10
Identities = 9/84 (10%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Query: 90 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
+ +G GK+ L + ++ +I + + I +
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQYRDTQT-SITDSSAIYKVNNNRGNSLTLIDLPGHESLRF 62
Query: 150 AVTRSYYRGAAGALMVIDVSHVKE 173
+ + A + V+D + +
Sbjct: 63 QLLDRFKSSARAVVFVVDSAAFQR 86
Score = 36.1 bits (82), Expect = 9e-04
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 19 IIIGDMGVGKSCLLHQFTEQKY 40
+ +G GK+ L + +Y
Sbjct: 4 LFVGLCDSGKTLLFVRLLTGQY 25
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 55.3 bits (132), Expect = 1e-10
Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 7/84 (8%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +++G GKS L Q + + T G+ + + + ++ D GQ
Sbjct: 3 VKILLLGAGESGKSTFLKQM---RIIHGQDPTKGI----HEYDFEIKNVPFKMVDVGGQR 55
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
R + L ++ S
Sbjct: 56 SERKRWFECFDSVTSILFLVSSSE 79
Score = 36.4 bits (83), Expect = 8e-04
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 16 FKYIIIGDMGVGKSCLLHQFT 36
K +++G GKS L Q
Sbjct: 3 VKILLLGAGESGKSTFLKQMR 23
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 53.9 bits (128), Expect = 3e-10
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 5/84 (5%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
K + +G GK+ LLH + T+ + E+ IK +D G +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRLA-----TLQPTWHPTSEELAIGNIKFTTFDLGGHIQ 56
Query: 148 FRAVTRSYYRGAAGALMVIDVSHV 171
R + + Y+ G + ++D +
Sbjct: 57 ARRLWKDYFPEVNGIVFLVDAADP 80
Score = 35.8 bits (81), Expect = 9e-04
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
K + +G GK+ LLH +
Sbjct: 2 KLLFLGLDNAGKTTLLHMLKNDRL 25
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 53.1 bits (126), Expect = 6e-10
Identities = 24/71 (33%), Positives = 37/71 (52%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
FK +++GD G GK+ + + +F T+GVE + + IK +WDTAGQE
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE 63
Query: 147 RFRAVTRSYYR 157
+F + YY
Sbjct: 64 KFGGLRDGYYI 74
Score = 40.4 bits (93), Expect = 2e-05
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
FK +++GD G GK+ + + ++
Sbjct: 4 FKLVLVGDGGTGKTTFVKRHLTGEF 28
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 53.0 bits (126), Expect = 9e-10
Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 6/84 (7%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +++G GKS + Q T G+ + + ++ D GQ
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE----YPFDLQSVIFRMVDVGGQR 56
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
R + + ++ +S
Sbjct: 57 SERRKWIHCFENVTSIMFLVALSE 80
Score = 37.2 bits (85), Expect = 3e-04
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQK 39
K +++G GKS + Q
Sbjct: 3 LKLLLLGTGESGKSTFIKQMRIIH 26
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 52.4 bits (124), Expect = 1e-09
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
K +++GD GK+ LLH F + F + T+ E T E+ ++I+L +WDT+G
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCFPENYVPTV-FENYTASFEIDTQRIELSLWDTSGSPY 62
Query: 148 FRAVTRSYYRGAAGALMVIDV 168
+ V Y + L+ D+
Sbjct: 63 YDNVRPLSYPDSDAVLICFDI 83
Score = 40.0 bits (92), Expect = 3e-05
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQKY 40
K +++GD GK+ LLH F + +
Sbjct: 4 KIVVVGDSQCGKTALLHVFAKDCF 27
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 50.4 bits (119), Expect = 6e-09
Identities = 22/81 (27%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K II+G GK+ +L+QF+ + + P G+ + E+ + +WD GQE
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEVVHTSPT-----IGSNVEEIVINNTRFLMWDIGGQE 70
Query: 147 RFRAVTRSYYRGAAGALMVID 167
R+ +YY ++V+D
Sbjct: 71 SLRSSWNTYYTNTEFVIVVVD 91
Score = 36.5 bits (83), Expect = 6e-04
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K II+G GK+ +L+QF+ +
Sbjct: 16 HKVIIVGLDNAGKTTILYQFSMNEV 40
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 49.6 bits (117), Expect = 1e-08
Identities = 24/81 (29%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K I G GVGKS L+ +F ++F+ + T+ + + E + ++I DTAGQE
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDD-EVVSMEILDTAGQE 61
Query: 147 RFRAVTRSYYRGAAGALMVID 167
+ R G ++V D
Sbjct: 62 DTI-QREGHMRWGEGFVLVYD 81
Score = 41.2 bits (95), Expect = 1e-05
Identities = 14/102 (13%), Positives = 33/102 (32%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
K I G GVGKS L+ +F +++ T + + + +L +
Sbjct: 3 VKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED 62
Query: 76 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPH 117
+ + + ++++ D+ S +
Sbjct: 63 TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP 104
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 49.6 bits (117), Expect = 1e-08
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
++ + G GVGKS L+ +F + F T+ + ++I LQI DT G
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV-EDTYRQVISCDKSICTLQITDTTGSH 61
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
+F A+ R ++V ++
Sbjct: 62 QFPAMQRLSISKGHAFILVYSITS 85
Score = 41.1 bits (95), Expect = 2e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
++ + G GVGKS L+ +F + +
Sbjct: 3 YRVAVFGAGGVGKSSLVLRFVKGTF 27
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 48.6 bits (114), Expect = 3e-08
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
S K I+G VGKS L QF E +F+ TI F T++I V+G++ LQ+ DTA
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTA 60
Query: 144 GQERFRAVTRSYYRGAAGALMVIDVSHVK 172
GQ+ + ++Y G ++V V+ +K
Sbjct: 61 GQDEYSIFPQTYSIDINGYILVYSVTSIK 89
Score = 38.9 bits (89), Expect = 9e-05
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
S K I+G VGKS L QF E ++
Sbjct: 2 SKSRKIAILGYRSVGKSSLTIQFVEGQF 29
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 48.0 bits (113), Expect = 6e-08
Identities = 26/103 (25%), Positives = 43/103 (41%), Gaps = 9/103 (8%)
Query: 68 LWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRI 127
L +++ K+ S+ + +++G GK+ LL Q + P G I
Sbjct: 2 LLSILRKLKSAPDQEV----RILLLGLDNAGKTTLLKQLASEDISHITPTQ-----GFNI 52
Query: 128 IEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
V + KL +WD GQ + R RSY+ + VID +
Sbjct: 53 KSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSAD 95
Score = 35.7 bits (81), Expect = 0.001
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 11 SYSYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
+ + +++G GK+ LL Q +
Sbjct: 12 APDQEVRILLLGLDNAGKTTLLKQLASEDI 41
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 47.3 bits (111), Expect = 1e-07
Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 9/84 (10%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K +++G GKS ++ Q G+ + + +++D GQ
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHE-----AGTGIV----ETHFTFKDLHFKMFDVGGQR 53
Query: 147 RFRAVTRSYYRGAAGALMVIDVSH 170
R + G + + +S
Sbjct: 54 SERKKWIHCFEGVTAIIFCVALSD 77
Score = 34.5 bits (78), Expect = 0.003
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
K +++G GKS ++ Q
Sbjct: 3 VKLLLLGAGESGKSTIVKQMKIIHE 27
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 46.3 bits (108), Expect = 2e-07
Identities = 10/55 (18%), Positives = 23/55 (41%)
Query: 86 IFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
++K +++G GVGKS L F + P+ + +++ + +
Sbjct: 1 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEASLMVYDI 55
Score = 41.6 bits (96), Expect = 1e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 15 IFKYIIIGDMGVGKSCLLHQFTEQKY 40
++K +++G GVGKS L F +
Sbjct: 1 VYKVLLLGAPGVGKSALARIFGGVED 26
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 45.5 bits (106), Expect = 4e-07
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
+ +I+G G GK+ +L++ + + P G + V + +K Q+WD G
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEVVTTIPT-----IGFNVETVTYKNLKFQVWDLGGLT 60
Query: 147 RFRAVTRSYYRGAAGALMVIDV 168
R R YY + V+D
Sbjct: 61 SIRPYWRCYYSNTDAVIYVVDS 82
Score = 37.0 bits (84), Expect = 4e-04
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKY 40
+ +I+G G GK+ +L++ +
Sbjct: 6 MRILILGLDGAGKTTILYRLQVGEV 30
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 45.4 bits (106), Expect = 6e-07
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 84 SYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
SY II G GK+ LL T P T+ + + G + + D
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRP----TVVSQEPLSAADYDGSGV--TLVDFP 54
Query: 144 GQERFRAVTRSYY 156
G + R Y
Sbjct: 55 GHVKLRYKLSDYL 67
Score = 35.0 bits (79), Expect = 0.002
Identities = 10/28 (35%), Positives = 11/28 (39%)
Query: 13 SYIFKYIIIGDMGVGKSCLLHQFTEQKY 40
SY II G GK+ LL T
Sbjct: 1 SYQPSIIIAGPQNSGKTSLLTLLTTDSV 28
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 44.2 bits (103), Expect = 1e-06
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
+ ++GD GKS L+H+F + E + + V G+ + I + A
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSY--QVLEKTESEQYKKEMLVDGQTHLVLIREEA 60
Score = 39.2 bits (90), Expect = 7e-05
Identities = 16/107 (14%), Positives = 32/107 (29%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
+ ++GD GKS L+H+F Y + + + ++ Q A
Sbjct: 6 LRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTHLVLIREEAGAPDA 65
Query: 76 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVE 122
SG + + S L Q + + + +
Sbjct: 66 KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALV 112
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 42.8 bits (99), Expect = 4e-06
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 85 YIFKYIIIGDMGVGKSCLLHQFTEQKF-MPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
++ ++IG+ GVGKS L + F M +G + R + V GE + +
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILL 58
Score = 40.1 bits (92), Expect = 3e-05
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 14 YIFKYIIIGDMGVGKSCLLHQFTEQKYF 41
++ ++IG+ GVGKS L + F
Sbjct: 2 TYYRVVLIGEQGVGKSTLANIFAGVHDS 29
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 42.4 bits (98), Expect = 5e-06
Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 5/83 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K + +G GK+ LLH + + P E+ + +D G
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPT-----LHPTSEELTIAGMTFTTFDLGGHI 68
Query: 147 RFRAVTRSYYRGAAGALMVIDVS 169
+ R V ++Y G + ++D +
Sbjct: 69 QARRVWKNYLPAINGIVFLVDCA 91
Score = 38.5 bits (88), Expect = 1e-04
Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 2/123 (1%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKM 75
K + +G GK+ LLH + + + ++ T ++
Sbjct: 14 GKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHIQARRV 73
Query: 76 SSSGQYSYSYIFKYIIIGDMGVGKSCL--LHQFTEQKFMPDCPHTIGVEFGTRIIEVHGE 133
+ + + I + D L + + + P I R + E
Sbjct: 74 WKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEE 133
Query: 134 KIK 136
+++
Sbjct: 134 RLR 136
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 40.4 bits (93), Expect = 2e-05
Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
+ ++G GK+ ++ +F D T+G ++ + +++WD GQ
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM----RKITKGNVTIKLWDIGGQ 57
Score = 35.8 bits (81), Expect = 9e-04
Identities = 4/37 (10%), Positives = 14/37 (37%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVC 52
+ ++G GK+ ++ ++ + T +
Sbjct: 3 MELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNM 39
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 34.7 bits (79), Expect = 0.004
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV--HGEKIKLQIWDTAGQERF 148
+ G+ G GKS ++ + GV T H + WD G
Sbjct: 61 VTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGST 120
Query: 149 RAVTRSYYR 157
+Y
Sbjct: 121 NFPPDTYLE 129
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE
(MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 33.6 bits (75), Expect = 0.006
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTA 143
K +I G GKS LL+ ++ G +H + + L I DTA
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGREAA-IVTDIAGTTRDVLREHIHIDGMPLHIIDTA 57
Score = 33.2 bits (74), Expect = 0.007
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQK 39
K +I G GKS LL+ ++
Sbjct: 2 MKVVIAGRPNAGKSSLLNALAGRE 25
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 32.6 bits (73), Expect = 0.013
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQK---------FMPDCPHTIGVEFGTRIIEVHGEKIKLQ 138
+ +I+G VGKS LL++ + D V G V ++ +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSE 61
Query: 139 IWDTAGQERFRAVTRSYYRGAAGALMVIDVSH 170
D + T A L V+D S
Sbjct: 62 TNDLVERLGIER-TLQEIEKADIVLFVLDASS 92
Score = 25.7 bits (55), Expect = 2.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 17 KYIIIGDMGVGKSCLLHQFTEQK 39
+ +I+G VGKS LL++ +
Sbjct: 2 RMVIVGKPNVGKSTLLNRLLNED 24
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 32.6 bits (74), Expect = 0.015
Identities = 18/95 (18%), Positives = 28/95 (29%), Gaps = 21/95 (22%)
Query: 91 IIGDMGVGKSCLLHQFTEQ-----------KFMPDCPHTIGVEFGTRI----IEVHGEKI 135
IG + GK+ L T + G I +E K
Sbjct: 8 TIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKR 67
Query: 136 KLQIWDTAGQERFRAVTRSYYRGAA---GALMVID 167
D G + ++ GAA GA++V+
Sbjct: 68 HYSHVDCPGHADY---IKNMITGAAQMDGAILVVS 99
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.5 bits (67), Expect = 0.100
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 8/140 (5%)
Query: 19 IIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSS 78
+++G GKS ++ + L L Y+ LR I+ K+ L L +++
Sbjct: 33 LVLGLRRTGKSSIIKIGINE-----LNLPYIYLDLRKFEERNYISYKDFLLELQKEINKL 87
Query: 79 GQYSYSYIFKYIIIGDMGVGKSCLLHQFT-EQKFMPDCPHTIGVEFGTRIIEVHGEKIKL 137
+ S + I G+ +F +K + + V +
Sbjct: 88 VKRLPSLLKALKNI--QGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEA 145
Query: 138 QIWDTAGQERFRAVTRSYYR 157
Q Y
Sbjct: 146 QELVKLRGVNLLPALAYAYD 165
>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli
[TaxId: 562]}
Length = 188
Score = 29.8 bits (65), Expect = 0.11
Identities = 13/54 (24%), Positives = 19/54 (35%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
+ G GKS L+ T QK + T G + EV K + +
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLP 70
Score = 27.8 bits (60), Expect = 0.60
Identities = 8/26 (30%), Positives = 10/26 (38%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYF 41
+ G GKS L+ T QK
Sbjct: 17 IEVAFAGRSNAGKSSALNTLTNQKSL 42
>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
horikoshii [TaxId: 53953]}
Length = 184
Score = 29.3 bits (64), Expect = 0.16
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 90 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFR 149
I G VGKS L+++ T +K G G + E +I D G
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKKV------RRGKRPGVTRKIIEIEWKNHKIIDMPGFGFMM 57
Score = 27.0 bits (58), Expect = 1.1
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 19 IIIGDMGVGKSCLLHQFTEQK 39
I G VGKS L+++ T +K
Sbjct: 4 IFAGRSNVGKSTLIYRLTGKK 24
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain
{Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 29.2 bits (64), Expect = 0.19
Identities = 13/81 (16%), Positives = 24/81 (29%), Gaps = 1/81 (1%)
Query: 91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRA 150
++G GKS LL T + ++EV E+ + + D G +
Sbjct: 6 LVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEEE-RFTLADIPGIIEGAS 64
Query: 151 VTRSYYRGAAGALMVIDVSHV 171
+ + V
Sbjct: 65 EGKGLGLEFLRHIARTRVLLY 85
Score = 26.5 bits (57), Expect = 1.6
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 20 IIGDMGVGKSCLLHQFTEQK 39
++G GKS LL T
Sbjct: 6 LVGYPNAGKSSLLAAMTRAH 25
>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga
maritima [TaxId: 2336]}
Length = 128
Score = 28.3 bits (62), Expect = 0.27
Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 7/61 (11%)
Query: 113 PDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVIDVSHVK 172
P+C + +G+E ++I + D + + + + +
Sbjct: 1 PNCAYVLGIEVT-------RDEIAACLIDASMNILAHEAHPLPSQSDREETLNVMYRIID 53
Query: 173 E 173
Sbjct: 54 R 54
>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 186
Score = 28.5 bits (62), Expect = 0.31
Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 1/70 (1%)
Query: 87 FKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQE 146
K I+G VGKS L + ++ G EV + K DTAG
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFIDGRKYVFVDTAGLR 67
Query: 147 RFRAVTRSYY 156
R V
Sbjct: 68 RKSRVEPRTV 77
Score = 27.7 bits (60), Expect = 0.68
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQK 39
K I+G VGKS L + ++
Sbjct: 9 IKVAIVGRPNVGKSTLFNAILNKE 32
>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum
[TaxId: 44689]}
Length = 306
Score = 28.3 bits (62), Expect = 0.43
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 90 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
+++G GKS +L + F+P G TR +
Sbjct: 28 VVVGSQSSGKSSVLENIVGRDFLP-----RGSGIVTRRPLI 63
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 27.9 bits (62), Expect = 0.47
Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 5/122 (4%)
Query: 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSS 77
+I GD GVGKS + ++ + L + D V + + + + + ++
Sbjct: 17 VLITGDSGVGKSETALELVQRGHRL---IADDRVDVYQQDEQTIVGAAPPILSHLLEIRG 73
Query: 78 SGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKL 137
G +F + L+ E I +V KI +
Sbjct: 74 LGIIDVMNLFGAGAV--REDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITV 131
Query: 138 QI 139
+
Sbjct: 132 PV 133
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 27.8 bits (60), Expect = 0.54
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 91 IIGDMGVGKSCLLHQFTEQKFM 112
I+G VGKS LL+ K
Sbjct: 10 IVGKPNVGKSTLLNNLLGVKVA 31
Score = 27.8 bits (60), Expect = 0.61
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 20 IIGDMGVGKSCLLHQFTEQK 39
I+G VGKS LL+ K
Sbjct: 10 IVGKPNVGKSTLLNNLLGVK 29
>d2q22a1 d.365.1.1 (A:8-138) Uncharacterized protein Ava3019
{Anabaena variabilis [TaxId: 1172]}
Length = 131
Score = 27.4 bits (61), Expect = 0.56
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 9/52 (17%)
Query: 44 LQLTQDYVCLRLVSTSQPITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDM 95
++ + CL + +P ++++ AL+ S Y I+G
Sbjct: 8 KKILNKFNCLDIAPILKPSEKESVRRALILITKLSD---------YQILGIC 50
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 28.1 bits (62), Expect = 0.61
Identities = 18/79 (22%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 90 IIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVH-GEKIKLQIWDTAGQERF 148
++IG+ GVGK+ ++ ++ D P + G RI+ + G + + +ER
Sbjct: 47 VLIGEPGVGKTAIVEGLAQRIVKGDVPEGL---KGKRIVSLQMGSLLAGAKYRGEFEERL 103
Query: 149 RAVTRSYYRGAAGALMVID 167
+AV + + ++ ID
Sbjct: 104 KAVIQEVVQSQGEVILFID 122
Score = 24.6 bits (53), Expect = 6.8
Identities = 6/15 (40%), Positives = 12/15 (80%)
Query: 19 IIIGDMGVGKSCLLH 33
++IG+ GVGK+ ++
Sbjct: 47 VLIGEPGVGKTAIVE 61
>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding
protein 1 (GBP1), N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 277
Score = 27.7 bits (61), Expect = 0.78
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 91 IIGDMGVGKSCLLHQFTEQKF-MPD----CPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQ 145
I+G GKS L+++ +K HT G+ L + DT G
Sbjct: 37 IVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPK-KPGHILVLLDTEGL 95
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain
{Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 27.2 bits (59), Expect = 0.92
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 1/57 (1%)
Query: 91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDTAGQER 147
++G VGKS LL + K H + ++E + + D G
Sbjct: 6 LVGFPSVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDDGR-SFVMADLPGLIE 61
Score = 25.3 bits (54), Expect = 3.8
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 20 IIGDMGVGKSCLLHQFTEQK 39
++G VGKS LL + K
Sbjct: 6 LVGFPSVGKSTLLSVVSSAK 25
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 26.4 bits (58), Expect = 1.4
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
Query: 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLRLVSTSQPITRKN 66
+I GD G+GKS + ++ + L + D V +R +S + I R
Sbjct: 18 VLITGDSGIGKSETALELIKRGHRL---VADDNVEIREISKDELIGRAP 63
>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis
[TaxId: 1423]}
Length = 195
Score = 26.6 bits (57), Expect = 1.4
Identities = 10/69 (14%), Positives = 21/69 (30%)
Query: 76 SSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKI 135
QY + + + G VGKS ++ +K + G ++ E
Sbjct: 13 VKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELH 72
Query: 136 KLQIWDTAG 144
+ +
Sbjct: 73 FVDVPGYGF 81
Score = 24.7 bits (52), Expect = 5.7
Identities = 8/39 (20%), Positives = 16/39 (41%)
Query: 1 MKTMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK 39
+ + QY + + + G VGKS ++ +K
Sbjct: 9 VISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRK 47
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 26.3 bits (56), Expect = 1.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 20 IIGDMGVGKSCLLHQFTEQK 39
I+G VGKS L ++ ++K
Sbjct: 5 IVGRPNVGKSTLFNKLVKKK 24
Score = 26.3 bits (56), Expect = 1.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 91 IIGDMGVGKSCLLHQFTEQK 110
I+G VGKS L ++ ++K
Sbjct: 5 IVGRPNVGKSTLFNKLVKKK 24
>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 299
Score = 26.4 bits (57), Expect = 1.9
Identities = 15/62 (24%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Query: 71 LVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTR-IIE 129
L S+ GQ + + + ++G GKS +L F + F+P G TR +
Sbjct: 11 LQDAFSAIGQNADLDLPQIAVVGGQSAGKSSVLENFVGRDFLP-----RGSGIVTRRPLV 65
Query: 130 VH 131
+
Sbjct: 66 LQ 67
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 25.8 bits (55), Expect = 2.2
Identities = 12/52 (23%), Positives = 17/52 (32%)
Query: 91 IIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIWDT 142
I+G VGKS LL++ QK I G + +
Sbjct: 10 IVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGAYQAIYVDTP 61
Score = 25.4 bits (54), Expect = 3.3
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 20 IIGDMGVGKSCLLHQFTEQK 39
I+G VGKS LL++ QK
Sbjct: 10 IVGRPNVGKSTLLNKLLGQK 29
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB
{Methylobacterium extorquens [TaxId: 408]}
Length = 323
Score = 26.0 bits (56), Expect = 2.6
Identities = 8/28 (28%), Positives = 11/28 (39%)
Query: 20 IIGDMGVGKSCLLHQFTEQKYFLGLQLT 47
I G GVGKS + G ++
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVA 83
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 26.1 bits (56), Expect = 2.6
Identities = 8/43 (18%), Positives = 15/43 (34%), Gaps = 2/43 (4%)
Query: 89 YIIIGDMGVGKSCLLHQFTE--QKFMPDCPHTIGVEFGTRIIE 129
+ G G GK+ L+ +F E E +++
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR 71
Score = 24.5 bits (52), Expect = 8.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 18 YIIIGDMGVGKSCLLHQF 35
+ G G GK+ L+ +F
Sbjct: 29 ILATGATGTGKTLLVSRF 46
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1
ATP synthase {Spinach (Spinacia oleracea), chloroplast
[TaxId: 3562]}
Length = 276
Score = 25.7 bits (56), Expect = 3.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 88 KYIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
+ +IIGD GK+ + + + V G + V
Sbjct: 69 RELIIGDRQTGKTAVATDTILNQQG-QNVICVYVAIGQKASSV 110
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 25.5 bits (54), Expect = 4.7
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 88 KYIIIGDMG-VGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEV 130
+G VG+SC++ +F +K M DC G+ G ++
Sbjct: 5 LIRPLGAGQEVGRSCIILEFKGRKIMLDC----GIHPGLEGMDA 44
>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34
{Garden pea (Pisum sativum) [TaxId: 3888]}
Length = 257
Score = 25.2 bits (54), Expect = 4.9
Identities = 9/50 (18%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 61 PITRKNLLWALVSKMSSSGQYSYSYIFKYIIIGDMGVGKSCLLHQFTEQK 110
+ L L+ + S +++G GVGKS ++ ++
Sbjct: 11 APATQTKLLELLGNLKQEDVNS----LTILVMGKGGVGKSSTVNSIIGER 56
Score = 24.4 bits (52), Expect = 7.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 16 FKYIIIGDMGVGKSCLLHQFTEQKYF 41
+++G GVGKS ++ ++
Sbjct: 33 LTILVMGKGGVGKSSTVNSIIGERVV 58
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.1 bits (53), Expect = 5.1
Identities = 7/52 (13%), Positives = 14/52 (26%)
Query: 89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTIGVEFGTRIIEVHGEKIKLQIW 140
+ G+ GK+ + H +P + E +L
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAV 77
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.0 bits (53), Expect = 5.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 18 YIIIGDMGVGKSCLLHQF 35
++ G G GK+ QF
Sbjct: 29 TLVSGTSGTGKTLFSIQF 46
Score = 25.0 bits (53), Expect = 5.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 89 YIIIGDMGVGKSCLLHQF 106
++ G G GK+ QF
Sbjct: 29 TLVSGTSGTGKTLFSIQF 46
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 17 KYIIIGDMGVGKSCLLHQ 34
K II G+ GVGK+ L+ +
Sbjct: 2 KIIITGEPGVGKTTLVKK 19
Score = 24.6 bits (52), Expect = 6.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 88 KYIIIGDMGVGKSCLLHQ 105
K II G+ GVGK+ L+ +
Sbjct: 2 KIIITGEPGVGKTTLVKK 19
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 24.6 bits (53), Expect = 7.1
Identities = 14/91 (15%), Positives = 24/91 (26%), Gaps = 14/91 (15%)
Query: 91 IIGDMGVGKSCLLHQFTEQ----------KFMPDCPHTIGVEFGTRI----IEVHGEKIK 136
IG + GK+ L T+ K+ G I +E
Sbjct: 8 TIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARH 67
Query: 137 LQIWDTAGQERFRAVTRSYYRGAAGALMVID 167
D G + + G ++V+
Sbjct: 68 YAHTDCPGHADYVKNMITGTAPLDGCILVVA 98
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 24.1 bits (52), Expect = 9.0
Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 9/57 (15%)
Query: 18 YIIIGDMGVGKSCLLHQFTEQKYFLGLQLTQDYVCLR-----LVSTSQPITRKNLLW 69
++ G G+GKS + + + D + + L +Q + + +
Sbjct: 18 VLLTGRSGIGKSECALDLINKNHLF---VGDDAIEIYRLGNRLFGRAQEVAK-KFME 70
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 24.2 bits (51), Expect = 9.2
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 89 YIIIGDMGVGKSCLLHQFTEQKFMPDCPHTI 119
Y+++G G GKS + + Q
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDF 39
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 24.3 bits (53), Expect = 9.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 20 IIGDMGVGKSCLLHQ 34
+ G GVGK+ L+ +
Sbjct: 73 LFGGAGVGKTVLIME 87
Score = 24.3 bits (53), Expect = 9.3
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 91 IIGDMGVGKSCLLHQ 105
+ G GVGK+ L+ +
Sbjct: 73 LFGGAGVGKTVLIME 87
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 631,903
Number of extensions: 27158
Number of successful extensions: 385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 182
Length of query: 173
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 94
Effective length of database: 1,322,926
Effective search space: 124355044
Effective search space used: 124355044
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)