RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13827
(819 letters)
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 99
Score = 127 bits (321), Expect = 9e-35
Identities = 48/99 (48%), Positives = 69/99 (69%), Gaps = 1/99 (1%)
Query: 523 PARLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNL 582
RLF+ SN +G F+VEEI +FSQ DL +D+MLLD D +F+W+G +++ +E K++
Sbjct: 1 KPRLFRCSNESGFFKVEEISDFSQDDLDTDDIMLLDTGDEVFVWVGSESSDEEKKEALTS 60
Query: 583 AIEYLKTDPSNRDL-DTPIMVIKQGYEPTTFTGFFGPWD 620
A +Y++TDP R TPI ++KQG EP TFTG+F WD
Sbjct: 61 AKKYIETDPLGRSKPRTPIYLVKQGNEPPTFTGYFHAWD 99
Score = 64.6 bits (158), Expect = 8e-13
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 171 CSDEDGTYKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHG 230
CS+E G +KV E+ Q DL++ D ++D G ++VWVG +S +E+ EA+ +A
Sbjct: 7 CSNESGFFKVEEI--SDFSQDDLDTDDIMLLD-TGDEVFVWVGSESSDEEKKEALTSAKK 63
Query: 231 FVRKKKYDSG---IPVTRVVEHGEPVEFKCMFHTW 262
++ P+ V + EP F FH W
Sbjct: 64 YIETDPLGRSKPRTPIYLVKQGNEPPTFTGYFHAW 98
Score = 43.4 bits (103), Expect = 3e-05
Identities = 17/31 (54%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 754 PSNRDL-DTPIMVIKQGYEPTTFTGFFGPWD 783
P R TPI ++KQG EP TFTG+F WD
Sbjct: 69 PLGRSKPRTPIYLVKQGNEPPTFTGYFHAWD 99
Score = 40.4 bits (95), Expect = 3e-04
Identities = 13/37 (35%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 44 NSGDVFILDTDDEVIFIWIGRAANYMEKLQATKVAQQ 80
++ D+ +LDT DE +F+W+G ++ EK +A A++
Sbjct: 28 DTDDIMLLDTGDE-VFVWVGSESSDEEKKEALTSAKK 63
Score = 35.4 bits (82), Expect = 0.016
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 682 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHRE--------VQGGESIRFRGYF 733
+ W+G S+DE A S + Y+ P+ + QG E F GYF
Sbjct: 39 DEVFVWVGSE-SSDEEKKEALTSAK--KYIETDPLGRSKPRTPIYLVKQGNEPPTFTGYF 95
Score = 32.7 bits (75), Expect = 0.17
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 445 LNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKR 481
L+++D+ +L F+W G S+ +E++ A AK+
Sbjct: 27 LDTDDIMLLDTGDEVFVWVGSESSDEEKKEALTSAKK 63
Score = 29.6 bits (67), Expect = 1.9
Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 12/73 (16%)
Query: 336 SGDCYLIHYQYAAGDILYYWLGSHRSIKE-QTALT-----IQTIMKDNNDLNGNGVQVRI 389
+ D L+ GD ++ W+GS S +E + ALT I+T + +
Sbjct: 29 TDDIMLLD----TGDEVFVWVGSESSDEEKKEALTSAKKYIET-DPLGRSKPRTPI-YLV 82
Query: 390 VQGKESPHFLSMF 402
QG E P F F
Sbjct: 83 KQGNEPPTFTGYF 95
Score = 29.2 bits (66), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKV 818
+LDT DE +F+W+G ++ EK +A
Sbjct: 33 MLLDTGDE-VFVWVGSESSDEEKKEALTS 60
>gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 101
Score = 121 bits (307), Expect = 7e-33
Identities = 48/102 (47%), Positives = 64/102 (62%), Gaps = 5/102 (4%)
Query: 305 LVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD----ILYYWLGSHR 360
+ D+G+G VWRI N E PV K YG F+ GDCY++ Y Y G ILY+W G H
Sbjct: 1 MYDDGSGKVEVWRIENDEKVPVPKEEYGQFYGGDCYIVLYTYQGGGKEEHILYFWQGRHS 60
Query: 361 SIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF 402
S E+ A + T+ + + +L G VQVR+VQGKE PHFL++F
Sbjct: 61 SQDERAAAALLTV-ELDEELKGRAVQVRVVQGKEPPHFLALF 101
Score = 58.4 bits (142), Expect = 1e-10
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 650 WRRDNIKKSVYLNEQEFKK-------IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAY 702
WR +N +K + ++E+ + I +Y+ G E ++FW G+++S DE A AA
Sbjct: 12 WRIENDEKVP-VPKEEYGQFYGGDCYIVLYTYQGGGKEEHILYFWQGRHSSQDERAAAAL 70
Query: 703 KSVELDNYLNGSPVQHREVQGGESIRFRGYF 733
+VELD L G VQ R VQG E F F
Sbjct: 71 LTVELDEELKGRAVQVRVVQGKEPPHFLALF 101
>gnl|CDD|200444 cd11288, gelsolin_S5_like, Gelsolin sub-domain 5-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 111 bits (279), Expect = 4e-29
Identities = 42/88 (47%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 422 LLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKR 481
L QV GN NT+AV+V+ S LNSNDVF+LK + ++W GKGS+ DERE+AK +A
Sbjct: 5 LFQVRGNGSGNTRAVEVDADASSLNSNDVFVLKTPSSVYLWVGKGSSEDERELAKDVASF 64
Query: 482 ISKD-DYNVIFEGQEKDEFWKTIGGKQD 508
+ + EG E DEFW+ +GGK +
Sbjct: 65 LKPKASLQEVAEGSEPDEFWEALGGKSE 92
Score = 42.2 bits (100), Expect = 6e-05
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 191 SDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYDSGIPVTRVVEHG 250
S LNS D F++ + ++++WVGKG+S+ ER A A + V E
Sbjct: 26 SSLNSNDVFVL-KTPSSVYLWVGKGSSEDERELAKDVA------SFLKPKASLQEVAEGS 78
Query: 251 EPVEF 255
EP EF
Sbjct: 79 EPDEF 83
Score = 41.1 bits (97), Expect = 1e-04
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 7/84 (8%)
Query: 17 SEPKLYRIKGKRSPT--ITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQA 74
S +L++++G S ++ A D NS DVF+L T +++W+G+ ++ E+ A
Sbjct: 1 SPTRLFQVRGNGSGNTRAVEVDA-DASSLNSNDVFVLKTP-SSVYLWVGKGSSEDERELA 58
Query: 75 TKVAQQLKTENNALALIFVEDGKE 98
VA LK + + V +G E
Sbjct: 59 KDVASFLKPKASLQE---VAEGSE 79
Score = 31.8 bits (73), Expect = 0.27
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 11/70 (15%)
Query: 336 SGDCYLIHYQYAAGDILYYWLGSHRSIKEQT-ALTIQTIMKDNNDLNGNGVQVRIVQGKE 394
S D +++ +Y W+G S E+ A + + +K L + +G E
Sbjct: 30 SNDVFVLKT----PSSVYLWVGKGSSEDERELAKDVASFLKPKASL------QEVAEGSE 79
Query: 395 SPHFLSMFGG 404
F GG
Sbjct: 80 PDEFWEALGG 89
Score = 30.3 bits (69), Expect = 0.99
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 10/91 (10%)
Query: 523 PARLFQI-SNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTN 581
P RLFQ+ N +G R E+ + L DV +L +++LW+G ++ DE + + +
Sbjct: 2 PTRLFQVRGNGSGNTRAVEVDADASS-LNSNDVFVLKTPSSVYLWVGKGSSEDERELAKD 60
Query: 582 LAIEYLKTDPSNRDLDTPIMVIKQGYEPTTF 612
+A +LK + + +G EP F
Sbjct: 61 VA-SFLKP-------KASLQEVAEGSEPDEF 83
>gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin_like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 113
Score = 106 bits (267), Expect = 3e-27
Identities = 38/61 (62%), Positives = 43/61 (70%)
Query: 678 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 737
G++ IH+WLGK S DEA AA K+VELD+YL G PVQHREVQG ES F YFK GI
Sbjct: 48 GSLSYDIHYWLGKEASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGI 107
Query: 738 R 738
Sbjct: 108 I 108
Score = 91.1 bits (227), Expect = 6e-22
Identities = 42/103 (40%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 309 GAGSK---TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAG------DILYYWLGSH 359
G G K +WRI N EL PV ++ YG F+ GD Y++ DI +YWLG
Sbjct: 3 GVGQKPGLQIWRIENFELVPVPESFYGKFYEGDSYIVLKTTLDPSGSLSYDI-HYWLGKE 61
Query: 360 RSIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF 402
S E A I+ + D+ L G VQ R VQG ES FLS F
Sbjct: 62 ASQDEAGAAAIKAVELDDY-LGGRPVQHREVQGHESEEFLSYF 103
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 98
Score = 98.9 bits (247), Expect = 9e-25
Identities = 46/90 (51%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 170 KCSDEDGTYKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAH 229
K SD G K+TEV G L Q L+S+D +I+D G I+VWVGKGAS ER A++NA
Sbjct: 8 KVSDASGKLKLTEVAEGSLNQEMLDSEDCYILD-CGSEIFVWVGKGASLDERKAALKNAE 66
Query: 230 GFVRKKKYDSGIPVTRVVEHGEPVEFKCMF 259
F+RKKK VTRV E GE FK F
Sbjct: 67 EFLRKKKRPPYTQVTRVTEGGESALFKSKF 96
Score = 75.0 bits (185), Expect = 2e-16
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 524 ARLFQISNATGRFRVEEIM--NFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTN 581
+L+++S+A+G+ ++ E+ + +Q+ L ED +LD IF+W+G A+ DE K +
Sbjct: 4 KKLYKVSDASGKLKLTEVAEGSLNQEMLDSEDCYILDCGSEIFVWVGKGASLDERKAALK 63
Query: 582 LAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFF 616
A E+L+ R T + + +G E F F
Sbjct: 64 NAEEFLRK--KKRPPYTQVTRVTEGGESALFKSKF 96
Score = 51.1 bits (123), Expect = 4e-08
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 16 KSEPKLYRIK---GKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKL 72
+ KLY++ GK T +++ + +S D +ILD E IF+W+G+ A+ E+
Sbjct: 1 AEQKKLYKVSDASGKLKLTEVAEGSLNQEMLDSEDCYILDCGSE-IFVWVGKGASLDERK 59
Query: 73 QATKVAQQL 81
A K A++
Sbjct: 60 AALKNAEEF 68
Score = 43.4 bits (103), Expect = 2e-05
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 445 LNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIA-KRISKDDYN------VIFEGQEKD 497
L+S D +IL F+W GKG++ DER+ A A + + K + EG E
Sbjct: 31 LDSEDCYILDCGSEIFVWVGKGASLDERKAALKNAEEFLRKKKRPPYTQVTRVTEGGESA 90
Query: 498 EF 499
F
Sbjct: 91 LF 92
Score = 40.3 bits (95), Expect = 3e-04
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 683 HIHFWLGKNTSTDEAAVAAYKSVEL---DNYLNGSPVQHREVQGGESIRFRGYFKN 735
I W+GK S DE A + E + V R +GGES F+ F N
Sbjct: 44 EIFVWVGKGASLDERKAALKNAEEFLRKKKRPPYTQV-TRVTEGGESALFKSKFAN 98
Score = 36.1 bits (84), Expect = 0.011
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKV 818
+ILD E IF+W+G+ A+ E+ A K
Sbjct: 37 YILDCGSE-IFVWVGKGASLDERKAALKN 64
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain. Gelsolin/severin/villin
homology domain. Calcium-binding and actin-binding. Both
intra- and extracellular domains.
Length = 90
Score = 78.9 bits (195), Expect = 6e-18
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 528 QISNATGRFRVEEI-MNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEY 586
+ G+ V + FSQ L D +LD I++W+G K+++DE K++ LA+E
Sbjct: 1 FLVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVEL 60
Query: 587 LKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPW 619
T + V+ +G EP F FG W
Sbjct: 61 DDTLGPGP---VQVRVVDEGKEPPEFWSLFGGW 90
Score = 76.2 bits (188), Expect = 7e-17
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 424 QVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRIS 483
V + N + +V LNS D +IL ++W GK S+ DE++ A +A +
Sbjct: 2 LVRVKGKRNVRVPEVPFSQGSLNSGDCYILDTGSEIYVWVGKKSSQDEKKKAAELAVELD 61
Query: 484 KDD------YNVIFEGQEKDEFWKTIGGK 506
V+ EG+E EFW GG
Sbjct: 62 DTLGPGPVQVRVVDEGKEPPEFWSLFGGW 90
Score = 75.8 bits (187), Expect = 7e-17
Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
Query: 178 YKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKY 237
+ V P Q LNS D +I+D G I+VWVGK +S+ E+ +A A
Sbjct: 8 KRNVRVPEVPFSQGSLNSGDCYILD-TGSEIYVWVGKKSSQDEKKKAAELAVELDDTLG- 65
Query: 238 DSGIPVTRVVEHGEPVEFKCMFHTW 262
+ V V E EP EF +F W
Sbjct: 66 PGPVQVRVVDEGKEPPEFWSLFGGW 90
Score = 72.7 bits (179), Expect = 9e-16
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 12/95 (12%)
Query: 315 VWRIN---NVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKEQ-TALTI 370
+ R+ NV + V + G SGDCY++ G +Y W+G S E+ A +
Sbjct: 2 LVRVKGKRNVRVPEVPFS-QGSLNSGDCYILDT----GSEIYVWVGKKSSQDEKKKAAEL 56
Query: 371 QTIMKDNNDLNGNGVQVRIV-QGKESPHFLSMFGG 404
+ D L VQVR+V +GKE P F S+FGG
Sbjct: 57 AVELDDT--LGPGPVQVRVVDEGKEPPEFWSLFGG 89
Score = 62.3 bits (152), Expect = 5e-12
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 682 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREV-QGGESIRFRGYFKNG 736
I+ W+GK +S DE AA +VELD+ L PVQ R V +G E F F
Sbjct: 35 SEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGGW 90
Score = 56.5 bits (137), Expect = 4e-10
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 20 KLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQATKVAQ 79
L R+KGKR+ + ++P NSGD +ILDT E I++W+G+ ++ EK +A ++A
Sbjct: 1 FLVRVKGKRNVRVPEVPF-SQGSLNSGDCYILDTGSE-IYVWVGKKSSQDEKKKAAELAV 58
Query: 80 QL-KTENNALALIF-VEDGKE 98
+L T + V++GKE
Sbjct: 59 ELDDTLGPGPVQVRVVDEGKE 79
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/29 (37%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKV 818
+ILDT E I++W+G+ ++ EK +A ++
Sbjct: 29 YILDTGSE-IYVWVGKKSSQDEKKKAAEL 56
>gnl|CDD|200445 cd11289, gelsolin_S2_like, Gelsolin sub-domain 2-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 92
Score = 74.2 bits (183), Expect = 3e-16
Identities = 31/93 (33%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 18 EPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQATKV 77
+P+L +KG+R+ ++ + W NSGDVFILD I+ W G +N EK +A ++
Sbjct: 1 KPRLLHVKGRRNVRAREVE-LSWSSLNSGDVFILDLGST-IYQWNGSKSNRFEKAKAMQL 58
Query: 78 AQQLKTENN--ALALIFVEDGKELNLPEAEKTL 108
AQ ++ E +I +++G PE K L
Sbjct: 59 AQGIRDERRLGRAKVIVLDEGDTNESPEFWKVL 91
Score = 55.3 bits (134), Expect = 2e-09
Identities = 30/92 (32%), Positives = 42/92 (45%), Gaps = 12/92 (13%)
Query: 422 LLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKR 481
LL V G N +A +V + S LNS DVFIL + W G S E+ A +A+
Sbjct: 4 LLHVKG--RRNVRAREVELSWSSLNSGDVFILDLGSTIYQWNGSKSNRFEKAKAMQLAQG 61
Query: 482 ISKDDYNV---------IFEGQEKDEFWKTIG 504
I +D+ + + E EFWK +G
Sbjct: 62 I-RDERRLGRAKVIVLDEGDTNESPEFWKVLG 92
Score = 43.4 bits (103), Expect = 2e-05
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYD 238
+ EV L S LNS D FI+D G I+ W G +++ E+ +A++ A G + +
Sbjct: 14 RAREV---ELSWSSLNSGDVFILDL-GSTIYQWNGSKSNRFEKAKAMQLAQGI--RDERR 67
Query: 239 SGIPVTRVVEHGE 251
G V++ G+
Sbjct: 68 LGRAKVIVLDEGD 80
Score = 37.2 bits (87), Expect = 0.003
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
Query: 523 PARLFQISNATGR--FRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDE 575
RL + GR R E+ S L DV +LD TI+ W G K+NR E
Sbjct: 1 KPRLLHVK---GRRNVRAREV-ELSWSSLNSGDVFILDLGSTIYQWNGSKSNRFE 51
Score = 30.7 bits (70), Expect = 0.58
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKV 818
FILD I+ W G +N EK +A ++
Sbjct: 31 FILDLGST-IYQWNGSKSNRFEKAKAMQL 58
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in
gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 88
Score = 60.8 bits (148), Expect = 1e-11
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 6/94 (6%)
Query: 523 PARLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNL 582
P RL+++ + +EE+ S L +DV +LD I++W G +++ E+ + L
Sbjct: 1 PPRLYRVRGSK-AIEIEEVPLASS-SLDSDDVFVLDTGSEIYIWQGRASSQAELAAAALL 58
Query: 583 AIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFF 616
A E + I+ I+QG EP F F
Sbjct: 59 AKELDEERKGK----PEIVRIRQGQEPREFWSLF 88
Score = 52.8 bits (127), Expect = 1e-08
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 6/88 (6%)
Query: 315 VWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKEQTALTIQTIM 374
V +E+E V S D +++ +Y W G S E A
Sbjct: 7 VRGSKAIEIEEVPLASS-SLDSDDVFVLDTGS----EIYIWQGRASSQAELAA-AALLAK 60
Query: 375 KDNNDLNGNGVQVRIVQGKESPHFLSMF 402
+ + + G VRI QG+E F S+F
Sbjct: 61 ELDEERKGKPEIVRIRQGQEPREFWSLF 88
Score = 48.5 bits (116), Expect = 3e-07
Identities = 24/85 (28%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 175 DGTYKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRK 234
++ EV PL S L+S D F++D G I++W G+ +S+ E A A
Sbjct: 10 SKAIEIEEV---PLASSSLDSDDVFVLD-TGSEIYIWQGRASSQAELAAAALLAKEL--D 63
Query: 235 KKYDSGIPVTRVVEHGEPVEFKCMF 259
++ + R+ + EP EF +F
Sbjct: 64 EERKGKPEIVRIRQGQEPREFWSLF 88
Score = 45.1 bits (107), Expect = 5e-06
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 683 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 733
I+ W G+ +S E A AA + ELD G P R QG E F F
Sbjct: 38 EIYIWQGRASSQAELAAAALLAKELDEERKGKPEIVRIRQGQEPREFWSLF 88
Score = 43.9 bits (104), Expect = 1e-05
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 432 NTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISKDDYN--- 488
+ +V + S L+S+DVF+L +IW G+ S+ E A L+AK + ++
Sbjct: 12 AIEIEEVPLASSSLDSDDVFVLDTGSEIYIWQGRASSQAELAAAALLAKELDEERKGKPE 71
Query: 489 --VIFEGQEKDEFW 500
I +GQE EFW
Sbjct: 72 IVRIRQGQEPREFW 85
Score = 42.4 bits (100), Expect = 4e-05
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 5/82 (6%)
Query: 19 PKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQAT-KV 77
P+LYR++G ++ I ++P +S DVF+LDT I+IW GRA++ +L A +
Sbjct: 2 PRLYRVRGSKAIEIEEVPLASSS-LDSDDVFVLDTG-SEIYIWQGRASS-QAELAAAALL 58
Query: 78 AQQL-KTENNALALIFVEDGKE 98
A++L + ++ + G+E
Sbjct: 59 AKELDEERKGKPEIVRIRQGQE 80
Score = 29.6 bits (67), Expect = 1.6
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQAT 816
F+LDT I+IW GRA++ +L A
Sbjct: 31 FVLDTG-SEIYIWQGRASS-QAELAAA 55
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat.
Length = 76
Score = 59.6 bits (145), Expect = 2e-11
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 320 NVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKEQTALTIQTIMKDNND 379
N L P SGDCYL+ G ++ W+G S E+ + D ++
Sbjct: 1 NFVLPPPVPLSQESLNSGDCYLL----DTGFTIFLWVGKGSSPDEKLFAALLAAQIDLDE 56
Query: 380 LNGNGVQVRIVQGKESPHFL 399
R+VQGKE FL
Sbjct: 57 RFPLPEVDRVVQGKEPARFL 76
Score = 58.9 bits (143), Expect = 6e-11
Identities = 25/78 (32%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 535 RFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPSNR 594
F + + SQ+ L D LLD TIFLW+G ++ DE + LA + D R
Sbjct: 1 NFVLPPPVPLSQESLNSGDCYLLDTGFTIFLWVGKGSSPDEKLFAALLAAQI---DLDER 57
Query: 595 DLDTPIMVIKQGYEPTTF 612
+ + QG EP F
Sbjct: 58 FPLPEVDRVVQGKEPARF 75
Score = 51.5 bits (124), Expect = 2e-08
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 682 QHIHFWLGKNTSTDEAAVAAYKSVELD-NYLNGSPVQHREVQGGESIRFR 730
I W+GK +S DE AA + ++D + P R VQG E RF
Sbjct: 27 FTIFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPEVDRVVQGKEPARFL 76
Score = 48.8 bits (117), Expect = 2e-07
Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 2/78 (2%)
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYD 238
PL Q LNS D +++D G I++WVGKG+S E++ A A +
Sbjct: 1 NFVLPPPVPLSQESLNSGDCYLLD-TGFTIFLWVGKGSSPDEKLFAALLAAQI-DLDERF 58
Query: 239 SGIPVTRVVEHGEPVEFK 256
V RVV+ EP F
Sbjct: 59 PLPEVDRVVQGKEPARFL 76
Score = 48.1 bits (115), Expect = 4e-07
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Query: 39 DWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQATKVAQQL-KTENNALALIFVED-G 96
+ NSGD ++LDT IF+W+G+ ++ EKL A +A Q+ E L + G
Sbjct: 11 SQESLNSGDCYLLDTGFT-IFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPEVDRVVQG 69
Query: 97 KELN 100
KE
Sbjct: 70 KEPA 73
Score = 47.7 bits (114), Expect = 4e-07
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 445 LNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISKDDYN------VIFEGQEKDE 498
LNS D ++L F+W GKGS+ DE+ A L+A +I D+ + +G+E
Sbjct: 15 LNSGDCYLLDTGFTIFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPEVDRVVQGKEPAR 74
Query: 499 FW 500
F
Sbjct: 75 FL 76
Score = 29.2 bits (66), Expect = 1.7
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 788 KLFILDTDDEVIFIWIGRAANYMEKLQAT 816
++LDT IF+W+G+ ++ EKL A
Sbjct: 19 DCYLLDTGFT-IFLWVGKGSSPDEKLFAA 46
>gnl|CDD|128458 smart00153, VHP, Villin headpiece domain.
Length = 36
Score = 48.1 bits (115), Expect = 1e-07
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
YL++++F+++F M+ E F LP W+++ +KK L
Sbjct: 1 YLSDEDFEEVFGMTREEFYKLPLWKQNQLKKKKGL 35
>gnl|CDD|202157 pfam02209, VHP, Villin headpiece domain.
Length = 36
Score = 48.1 bits (115), Expect = 1e-07
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
YL++++F+++F M+ E F LP W+++ +KK + L
Sbjct: 1 YLSDEDFEEVFGMTKEEFYKLPAWKQNQLKKKLGL 35
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 33.4 bits (75), Expect = 0.47
Identities = 16/89 (17%), Positives = 32/89 (35%)
Query: 10 FNHVTKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYM 69
+ +L G + + ID + F + +L + + +++GR
Sbjct: 153 RVIAVSPALKELLEALGVPNKIVVIPNGIDTEKFAPARIGLLPEGGKFVVLYVGRLDPEK 212
Query: 70 EKLQATKVAQQLKTENNALALIFVEDGKE 98
+ A +LK + L+ V DG E
Sbjct: 213 GLDLLIEAAAKLKKRGPDIKLVIVGDGPE 241
>gnl|CDD|227704 COG5417, COG5417, Uncharacterized small protein [Function unknown].
Length = 81
Score = 28.6 bits (64), Expect = 3.0
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 315 VWRINNVELEPVDKTMY-----GVFFSGDCYLIHYQYAAGDIL 352
VW + + + T SGD LI YQ A GDIL
Sbjct: 36 VWESLKISIFDREGTQIKVMNKAQLLSGDDKLIDYQIADGDIL 78
>gnl|CDD|165264 PHA02955, PHA02955, hypothetical protein; Provisional.
Length = 213
Score = 29.9 bits (67), Expect = 3.6
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 630 EQEFKKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEF----KKIFQMSYEMYGTMEQHI- 684
E+ F+ + + E+ P+ + I + +N ++ K Q+ E Y + QHI
Sbjct: 60 EKNFQLLIEALIETIENFPEKEQKEIAADIGINIDDYKAGKKTDLQLHCEAYANLTQHID 119
Query: 685 --HFWLGKNTSTDE 696
HF +G S ++
Sbjct: 120 IQHFNIGTCYSPND 133
>gnl|CDD|223330 COG0252, AnsB, L-asparaginase/archaeal Glu-tRNAGln amidotransferase
subunit D [Amino acid transport and metabolism /
Translation, ribosomal structure and biogenesis].
Length = 351
Score = 29.9 bits (68), Expect = 4.8
Identities = 13/59 (22%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 502 TIGGKQDYASNKKLATLHDPMPARLFQISNATG---RFRVEEIMNFSQQDLIPEDVMLL 557
TI D ++ T L A E+++N D+ PED + L
Sbjct: 30 TIASGTDSSTGAVTPTSGALEILALLPAVPALNIAANIEGEQVLNIDSSDMTPEDWLRL 88
>gnl|CDD|236622 PRK09774, PRK09774, fec operon regulator FecR; Reviewed.
Length = 319
Score = 30.1 bits (68), Expect = 4.9
Identities = 9/34 (26%), Positives = 14/34 (41%)
Query: 711 LNGSPVQHREVQGGESIRFRGYFKNGIRSNRATD 744
L +P Q R V GES++F ++
Sbjct: 206 LASAPAQKRIVNAGESLQFSASEFGAVKPLDDES 239
>gnl|CDD|171531 PRK12481, PRK12481, 2-deoxy-D-gluconate 3-dehydrogenase;
Provisional.
Length = 251
Score = 29.1 bits (65), Expect = 9.0
Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
Query: 529 ISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQ 578
I+NA G R ++++ F +D +DV+ ++ + F L + VKQ
Sbjct: 88 INNA-GIIRRQDLLEFGNKDW--DDVININQKTVFF--LSQAVAKQFVKQ 132
>gnl|CDD|145062 pfam01710, HTH_Tnp_IS630, Transposase. Transposase proteins are
necessary for efficient DNA transposition. This family
includes insertion sequences from Synechocystis PCC 6803
three of which are characterized as homologous to
bacterial IS5- and IS4- and to several members of the
IS630-Tc1-mariner superfamily.
Length = 120
Score = 27.8 bits (62), Expect = 9.9
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 559 ARDTIFLWLGDKAN---RDEVKQSTNLAIEYLKTD 590
R TI+ WL + + E + + + LK D
Sbjct: 31 GRATIYRWLKREKLGALKVEPRGRHKIDRDALKND 65
>gnl|CDD|218986 pfam06317, Arena_RNA_pol, Arenavirus RNA polymerase. This family
consists of several Arenavirus RNA polymerase proteins
(EC:2.7.7.48).
Length = 2206
Score = 29.6 bits (67), Expect = 10.0
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 20/51 (39%)
Query: 424 QVTGNNEF-----NTK-----------AVQVNMRGSCLNSNDVFILKKEKA 458
QV GN E NTK A+ MR SCLN+ F E+A
Sbjct: 1119 QVGGNRELYVGDLNTKMFTRLIEDYFEALTSQMRYSCLNNEKEF----ERA 1165
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 41,931,387
Number of extensions: 4124471
Number of successful extensions: 3315
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3276
Number of HSP's successfully gapped: 66
Length of query: 819
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 714
Effective length of database: 6,280,432
Effective search space: 4484228448
Effective search space used: 4484228448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)