RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13827
(819 letters)
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
protein, protein D packing, contractIle protein; 2.50A
{Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A
3ffk_A* 1rgi_G*
Length = 729
Score = 434 bits (1117), Expect = e-141
Identities = 219/653 (33%), Positives = 325/653 (49%), Gaps = 56/653 (8%)
Query: 1 YLTGGVSSGFNHVTKKS--EPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVI 58
Y GGV+SGF HV +L ++KG+R T++P + W+ FN+GD FILD + I
Sbjct: 114 YKKGGVASGFKHVVPNEVVVQRLLQVKGRRVVRATEVP-VSWESFNNGDCFILDLGNN-I 171
Query: 59 FIWIGRAANYMEKLQATKVAQQLKTENNA--LALIFVEDGKELNLPEAEKTLLGVYLDLR 116
+ W G +N E+L+AT+V++ ++ + + E+G E PEA L +
Sbjct: 172 YQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSVFEEGAE---PEA-------MLQVL 221
Query: 117 ASVGVKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDG 176
E + + KLY+ S+ G V+ V
Sbjct: 222 GPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADE---------------- 265
Query: 177 TYKVTEVKTGPLYQSDLNSKDSFIIDQ-NGRAIWVWVGKGASKKERIEAIRNAHGFVRKK 235
P Q L S+D FI+D I+VW GK A+ +ER A++ A F+ K
Sbjct: 266 ---------NPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKM 316
Query: 236 KYDSGIPVTRVVEHGEPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHS 295
Y V+ + E GE F+ F WRDPD+ Y IAH+ D A+LH+
Sbjct: 317 DYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHT 376
Query: 296 CPQLAANTRLVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD----I 351
+AA + D+G G K +WR+ PVD YG F+ GD Y+I Y Y G I
Sbjct: 377 STAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQI 436
Query: 352 LYYWLGSHRSIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGG-MAIMFK 410
+Y W G+ + E A I T D +L G VQ R+VQGKE H +S+FGG I++K
Sbjct: 437 IYNWQGAQSTQDEVAASAILTAQLD-EELGGTPVQSRVVQGKEPAHLMSLFGGKPMIVYK 495
Query: 411 G-----DHQYKLPNTFLLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGK 465
G Q +T L QV ++ T+AV++ + LNSND F+LK A ++W G
Sbjct: 496 GGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGA 555
Query: 466 GSTGDEREMAKLIAKRISKDDYNVIFEGQEKDEFWKTIGGKQDYASNKKLA-TLHDPMPA 524
G++ E+ A+ + + + + + EG E D FW+ +GGK Y ++ +L D P
Sbjct: 556 GASEAEKTGAQELLRVL-RAQPVQVAEGSEPDSFWEALGGKATYRTSPRLKDKKMDAHPP 614
Query: 525 RLFQISNATGRFRVEEI-MNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLA 583
RLF SN GRF +EE+ F Q+DL +DVMLLD D +F+W+G + +E ++ A
Sbjct: 615 RLFACSNKIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQVFVWVGKDSQDEEKTEALTSA 674
Query: 584 IEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKVYLNEQEFKKI 636
Y+ TDP++RD TPI V+KQG+EP +F G+F WD W V ++ ++
Sbjct: 675 KRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWSVDPLDRALAEL 727
Score = 248 bits (633), Expect = 2e-71
Identities = 138/561 (24%), Positives = 204/561 (36%), Gaps = 70/561 (12%)
Query: 314 TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD-----ILYYWLGSHRSIKEQTAL 368
+WR+ +L PV +YG FF+GD Y+I + L+YWLG+ S E A
Sbjct: 16 QIWRVEKFDLVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAA 75
Query: 369 TIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF-GGMAIM-------FKGDHQYKLPNT 420
I T+ D+ LNG VQ R VQG ES FL F G+ FK ++
Sbjct: 76 AIFTVQLDD-YLNGRAVQHREVQGFESATFLGYFKSGLKYKKGGVASGFKHVVPNEVVVQ 134
Query: 421 FLLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAK 480
LLQV G +A +V + N+ D FIL + WCG S ER A ++K
Sbjct: 135 RLLQVKGRR--VVRATEVPVSWESFNNGDCFILDLGNNIYQWCGSKSNRFERLKATQVSK 192
Query: 481 RISKDDYN------VIFEGQEKDEFWKTIGGKQDYASNKKLATLHD---PMPARLFQISN 531
I ++ + V EG E + + +G K + D A+L+++SN
Sbjct: 193 GIRDNERSGRAQVSVFEEGAEPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLYKVSN 252
Query: 532 ATGRFRVEEI---MNFSQQDLIPEDVMLLDA--RDTIFLWLGDKANRDEVKQSTNLAIEY 586
G V + F+Q L ED +LD IF+W G +AN +E K + A ++
Sbjct: 253 GAGPMVVSLVADENPFAQGALRSEDCFILDHGKDGKIFVWKGKQANMEERKAALKTASDF 312
Query: 587 LKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKVYLNEQEFKKIFQMSYE---- 642
+ + T + V+ +G E F FF W L
Sbjct: 313 ISKM--DYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYLSSHIAHVERVPFD 370
Query: 643 --------SFTTLPKWRRDNIKKSVYLNEQEFKK-----------------IFQMSYEMY 677
+ D + + K I +Y
Sbjct: 371 AATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQFYGGDSYIILYNYRHG 430
Query: 678 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNG- 736
Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 431 SRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKP 490
Query: 737 --IRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKLFILDT 794
+ + P + + E G D F+L T
Sbjct: 491 MIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGALNSNDA-----FVLKT 545
Query: 795 DDEVIFIWIGRAANYMEKLQA 815
++W+G A+ EK A
Sbjct: 546 PSA-AYLWVGAGASEAEKTGA 565
Score = 136 bits (343), Expect = 3e-33
Identities = 144/839 (17%), Positives = 256/839 (30%), Gaps = 188/839 (22%)
Query: 10 FNHVTKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFI--------LDTDDEVIFIW 61
F K+ +++R++ + +P + F +GD ++ + W
Sbjct: 6 FLKAGKEPGLQIWRVEKFD---LVPVPPNLYGDFFTGDAYVILKTVQLRNGILQYDLHYW 62
Query: 62 IGRAANYMEKLQATKVAQQLKTENNALA-LIFVEDGKELNLPEAEKTLLGVYLDLRASVG 120
+G + E A QL N A G E L +
Sbjct: 63 LGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFE---SATFLGYFKSGLKYK---- 115
Query: 121 VKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTYKV 180
KG + + V +L Q G V +
Sbjct: 116 -KGGVASGFKHVVPNEVVVQRLLQVK---GRRVV------------------------RA 147
Query: 181 TEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYDSG 240
TEV P+ N+ D FI+D G I+ W G +++ ER++A + + G + SG
Sbjct: 148 TEV---PVSWESFNNGDCFILD-LGNNIYQWCGSKSNRFERLKATQVSKGI--RDNERSG 201
Query: 241 IPVTRVVEHGEPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHSCPQLA 300
V E G +P+ + + A K D A+
Sbjct: 202 RAQVSVFEEGA------------EPEAMLQVLGPKPTLPEATEDTVKEDAANRKLAKLY- 248
Query: 301 ANTRLVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHR 360
V NGAG V + + G S DC+++ + ++ W G
Sbjct: 249 ----KVSNGAGPMVVS-----LVADENPFAQGALRSEDCFILDHGKDG--KIFVWKGKQA 297
Query: 361 SIKE-QTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGG--------------- 404
+++E + AL + D + +G E+P F F
Sbjct: 298 NMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFKNWRDPDQTEGLGLAYL 357
Query: 405 -------------MAIMFKG-----DHQYKLPNTFLLQVTGNNEFNTKAVQVNMRGSCLN 446
A + H T Q+ N V G
Sbjct: 358 SSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEGSNKVPVDPATYGQ-FY 416
Query: 447 SNDVFIL--------KKEKAYFIWCGKGSTGDEREMAKLIAKRISKD-----DYNVIFEG 493
D +I+ ++ + + W G ST DE + ++ ++ ++ + + +G
Sbjct: 417 GGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQG 476
Query: 494 QEKDEFWKTIGGKQDY---ASNKKLATLHDPMPARLFQI-SNATGRFRVEEIMNFSQQDL 549
+E GGK + P RLFQ+ ++++G R EI+ + L
Sbjct: 477 KEPAHLMSLFGGKPMIVYKGGTSREGGQTAPASTRLFQVRASSSGATRAVEIIPKAGA-L 535
Query: 550 IPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEP 609
D +L +LW+G A+ E + L R L + + +G EP
Sbjct: 536 NSNDAFVLKTPSAAYLWVGAGASEAEKTGAQELL----------RVLRAQPVQVAEGSEP 585
Query: 610 TTFTGFFGPWDTDLWKVYLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEFKKI 669
+F G T L +++ + + ++ + + + +
Sbjct: 586 DSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGEFMQEDLATDDV 645
Query: 670 FQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRF 729
+ + W+GK++ +E
Sbjct: 646 MLLDTW------DQVFVWVGKDSQDEEKT------------------------------- 668
Query: 730 RGYFKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWK 788
A Y P++RD TPI V+KQG+EP +F G+F WD W
Sbjct: 669 -----------EALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLGWDDSYWS 716
Score = 115 bits (288), Expect = 1e-26
Identities = 140/713 (19%), Positives = 225/713 (31%), Gaps = 127/713 (17%)
Query: 173 DEDGTYKVTEVKTGPLYQSDLNSKDSFII-----DQNGR---AIWVWVGKGASKKERIEA 224
++ V G + + D+++I +NG + W+G S+ E A
Sbjct: 21 EKFDLVPVPPNLYGDFF-----TGDAYVILKTVQLRNGILQYDLHYWLGNECSQDESGAA 75
Query: 225 IRNAHGFVRKKKYDSGIPVT-RVVEHGEPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHL 283
V+ Y +G V R V+ E F F
Sbjct: 76 AIFT---VQLDDYLNGRAVQHREVQGFESATFLGYFK------------------SGLKY 114
Query: 284 TPSKLDMASLHSCPQLAANTRLVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIH 343
+ H P RL+ V V + + F +GDC+++
Sbjct: 115 KKGGVASGFKHVVPNEVVVQRLLQVKGR-------RVVRATEVPVS-WESFNNGDCFILD 166
Query: 344 YQYAAGDILYYWLGSHRSIKEQT-ALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF 402
G+ +Y W GS + E+ A + ++DN V V +G E L +
Sbjct: 167 ----LGNNIYQWCGSKSNRFERLKATQVSKGIRDNERSGRAQVSV-FEEGAEPEAMLQVL 221
Query: 403 GGMAIMFKGDH------QYKLPNTFLLQV---TGNNEFNTKAVQVNMRGSCLNSNDVFIL 453
G + + L +V G + A + L S D FIL
Sbjct: 222 GPKPTLPEATEDTVKEDAANRKLAKLYKVSNGAGPMVVSLVADENPFAQGALRSEDCFIL 281
Query: 454 K--KEKAYFIWCGKGSTGDEREMAKLIAKR-ISKDDYN------VIFEGQEKDEFW---- 500
K+ F+W GK + +ER+ A A ISK DY V+ EG E F
Sbjct: 282 DHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQFFK 341
Query: 501 ------KTIGGKQDYASNK---------KLATLHD--PMPARLFQISNATGRFRVEEIMN 543
+T G Y S+ ATLH M A+ + TG+ ++ +
Sbjct: 342 NWRDPDQTEGLGLAYLSSHIAHVERVPFDAATLHTSTAMAAQHGMDDDGTGQKQIWRVEG 401
Query: 544 FSQQDLIPEDVMLLDARDT----------------IFLWLGDKANRDEVKQSTNLAIEYL 587
++ + P D+ I+ W G ++ +DEV S L +
Sbjct: 402 SNKVPVDPATYGQFYGGDSYIILYNYRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLD 461
Query: 588 KTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKVYLNEQEFKKIFQMSYESFTTL 647
+ + QG EP FG + + + + + + T L
Sbjct: 462 EELGGT----PVQSRVVQGKEPAHLMSLFGGK-----PMIVYKGGTSREGGQTAPASTRL 512
Query: 648 PKWRRDNIKKSVYLNEQEFKKIFQMSYEMY-GTMEQHIHFWLGKNTSTDEAAVAAYKSVE 706
R + + E K S + + + W+G S E A E
Sbjct: 513 -FQVRASSSGATRAVEIIPKAGALNSNDAFVLKTPSAAYLWVGAGASEAEKTGAQ----E 567
Query: 707 LDNYLNGSPVQHREVQGGESIRFRGYFKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVI 766
L L PVQ E G E F + D +P +
Sbjct: 568 LLRVLRAQPVQVAE--GSEPDSFWEALGGKATYRTSPRLKDKKMDAHPPRLFACSN---- 621
Query: 767 KQGY-EPTTFTGFFGPWDTDLWKLFILDTDDEVIFIWIGRAANYMEKLQATKV 818
K G G F D + +LDT D+ +F+W+G+ + EK +A
Sbjct: 622 KIGRFVIEEVPGEFMQEDLATDDVMLLDTWDQ-VFVWVGKDSQDEEKTEALTS 673
Score = 92.3 bits (228), Expect = 2e-19
Identities = 48/151 (31%), Positives = 73/151 (48%), Gaps = 3/151 (1%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
I + G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES
Sbjct: 44 ILKTVQLRNGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 103
Query: 729 FRGYFKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWK 788
F GYFK+G++ + + + ++ +K +
Sbjct: 104 FLGYFKSGLKYKKGGVASGFKHVVPNEVVVQ--RLLQVKGRRVVRATEVPVSWESFNNGD 161
Query: 789 LFILDTDDEVIFIWIGRAANYMEKLQATKVI 819
FILD + I+ W G +N E+L+AT+V
Sbjct: 162 CFILDLGNN-IYQWCGSKSNRFERLKATQVS 191
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
actin-binding, calcium, cytoplasm, cytoskeleton,
structural protein; 2.00A {Homo sapiens}
Length = 398
Score = 335 bits (859), Expect = e-107
Identities = 167/386 (43%), Positives = 228/386 (59%), Gaps = 17/386 (4%)
Query: 248 EHGEPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHSCPQLAANTRLVD 307
H + +F P +++G +A + K D S+H PQ+AA ++VD
Sbjct: 6 HHHHHHHLEVLFQGPGRP-------KTHTVGSVAKVEQVKFDATSMHVKPQVAAQQKMVD 58
Query: 308 NGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD----ILYYWLGSHRSIK 363
+G+G VWRI N+EL PVD G F+ GDCYL+ Y Y G+ +LY W GS S
Sbjct: 59 DGSGEVQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLIGEKQHYLLYVWQGSQASQD 118
Query: 364 EQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMF-----KGDHQYKLP 418
E TA Q ++ D NG VQ+R+ GKE PH +S+F G +++ + ++ P
Sbjct: 119 EITASAYQAVILDQK-YNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSRTNNLETGP 177
Query: 419 NTFLLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLI 478
+T L QV G NTKA +V R + LNSNDVF+LK + ++WCGKG +GDEREMAK++
Sbjct: 178 STRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSCCYLWCGKGCSGDEREMAKMV 237
Query: 479 AKRISKDDYNVIFEGQEKDEFWKTIGGKQDYASNKKLATLHDPMPARLFQISNATGRFRV 538
A IS+ + V+ EGQE FW +GGK YA+ K+L + + RLF+ SN TGRF
Sbjct: 238 ADTISRTEKQVVVEGQEPANFWMALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLA 297
Query: 539 EEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDT 598
EI +F+Q DL +DV LLD D +F W+G AN +E K + A EYLKT PS RD +T
Sbjct: 298 TEIPDFNQDDLEEDDVFLLDVWDQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGRDPET 357
Query: 599 PIMVIKQGYEPTTFTGFFGPWDTDLW 624
PI+V+KQG+EP TFTG+F WD W
Sbjct: 358 PIIVVKQGHEPPTFTGWFLAWDPFKW 383
Score = 132 bits (333), Expect = 2e-33
Identities = 53/267 (19%), Positives = 96/267 (35%), Gaps = 50/267 (18%)
Query: 1 YLTGGVSSGFNHVTKKSEPKLYRIKGKRSPTITQMP-AIDWKYFNSGDVFILDTDDEVIF 59
+ G +S N++ +L++++G + + NS DVF+L T +
Sbjct: 161 VVYQGGTSRTNNLETGPSTRLFQVQGTGANNTKAFEVPARANFLNSNDVFVLKTQSC-CY 219
Query: 60 IWIGRAANYMEKLQATKVAQQLKTENNALALIFVEDGKELNLPEAEKTLLGVYLDLRASV 119
+W G+ + E+ A VA + V +G+E P L
Sbjct: 220 LWCGKGCSGDEREMAKMVADTISRTE----KQVVVEGQE---PANFWMAL---------- 262
Query: 120 GVKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTYK 179
G K + + E +L++CS++ G + TE+
Sbjct: 263 GGKAPYANTKRLQEENLVITPRLFECSNKTGRFLATEIP--------------------- 301
Query: 180 VTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKK--KY 237
Q DL D F++D ++ W+GK A+++E+ A A +++
Sbjct: 302 -------DFNQDDLEEDDVFLLD-VWDQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGR 353
Query: 238 DSGIPVTRVVEHGEPVEFKCMFHTWRD 264
D P+ V + EP F F W
Sbjct: 354 DPETPIIVVKQGHEPPTFTGWFLAWDP 380
Score = 93.4 bits (231), Expect = 2e-20
Identities = 65/345 (18%), Positives = 110/345 (31%), Gaps = 74/345 (21%)
Query: 454 KKEKAYFIWCGKGSTGDEREMAKLIAKRIS-----KDDYNVIFEGQEKDEFWKTIGGKQD 508
K+ ++W G ++ DE + A + + + G+E G+
Sbjct: 102 KQHYLLYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMV 161
Query: 509 YASNK--KLATLHDPMPARLFQI-SNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFL 565
+ L RLFQ+ + E+ L DV +L + +L
Sbjct: 162 VYQGGTSRTNNLETGPSTRLFQVQGTGANNTKAFEV-PARANFLNSNDVFVLKTQSCCYL 220
Query: 566 WLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWK 625
W G + DE + + +A T V+ +G EP F W
Sbjct: 221 WCGKGCSGDEREMAKMVADTIS---------RTEKQVVVEGQEPANF-----------WM 260
Query: 626 VYLNEQEFKKIFQMSYESFT-TLPKWRRDNIKKSVYLNEQEF--KKIFQMSYEMYGTMEQ 682
+ + ++ E+ T + N E + + +
Sbjct: 261 ALGGKAPYANTKRLQEENLVITPRLFECSNKTGRFLATEIPDFNQDDLEEDDVFLLDVWD 320
Query: 683 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGIRSNRA 742
+ FW+GK+ + +E AA +
Sbjct: 321 QVFFWIGKHANEEEKK-AAATTA------------------------------------- 342
Query: 743 TDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLW 787
Y +PS RD +TPI+V+KQG+EP TFTG+F WD W
Sbjct: 343 ----QEYLKTHPSGRDPETPIIVVKQGHEPPTFTGWFLAWDPFKW 383
Score = 76.0 bits (186), Expect = 9e-15
Identities = 34/158 (21%), Positives = 54/158 (34%), Gaps = 20/158 (12%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
+ +Y + ++ W G S DE +AY++V LD NG PVQ R G E
Sbjct: 92 LLLYTYLIGEKQHYLLYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPH 151
Query: 729 FRGYFKNGI-------RSNRATDPTDTYYPF-YPSNRDLDTPIMVIKQGYEPTTFTGFFG 780
FK + + + F +T + +E F
Sbjct: 152 LMSIFKGRMVVYQGGTSRTNNLETGPSTRLFQVQGTGANNT------KAFEVPARANFLN 205
Query: 781 PWDTDLWKLFILDTDDEVIFIWIGRAANYMEKLQATKV 818
D F+L T ++W G+ + E+ A V
Sbjct: 206 SNDV-----FVLKTQSC-CYLWCGKGCSGDEREMAKMV 237
Score = 68.7 bits (167), Expect = 2e-12
Identities = 73/395 (18%), Positives = 127/395 (32%), Gaps = 96/395 (24%)
Query: 20 KLYRIKGKRSPTITQMPAIDWKYFNSGDVFIL-------DTDDEVIFIWIGRAANYMEKL 72
+++RI+ + + + +F GD ++L + ++++W G A+ E
Sbjct: 65 QVWRIENL---ELVPVDSKWLGHFYGGDCYLLLYTYLIGEKQHYLLYVWQGSQASQDEIT 121
Query: 73 QATKVAQQLKTE-NNALALIFVEDGKE-LNLPEAEKTLLGVYLDLRASVGVKGNIGESDE 130
+ A L + N I V GKE +L K + VY +
Sbjct: 122 ASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFKGRMVVYQGGTSRTN---------- 171
Query: 131 VVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTYKVTEVKTGPLYQ 190
+L+Q + + + T K EV
Sbjct: 172 --NLETGPSTRLFQV------------------------QGTGANNT-KAFEVPARA--- 201
Query: 191 SDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYDSGIPVTRVVEHG 250
+ LNS D F++ ++W GKG S ER A A R VVE
Sbjct: 202 NFLNSNDVFVLKTQSC-CYLWCGKGCSGDEREMAKMVADTISRT-------EKQVVVEGQ 253
Query: 251 EPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHSCPQLAANTRLVDNGA 310
EP F GK + +L +L P+L N
Sbjct: 254 EPANFWMALG-----------------GKAPYANTKRLQEENLVITPRL----FECSNKT 292
Query: 311 GSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKE-QTALT 369
G I + + ++ D +L+ D +++W+G H + +E + A T
Sbjct: 293 GRFLATEIPDFNQDDLE--------EDDVFLLD----VWDQVFFWIGKHANEEEKKAAAT 340
Query: 370 I--QTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF 402
+ + + + + + QG E P F F
Sbjct: 341 TAQEYLKTHPSGRDPETPIIVVKQGHEPPTFTGWF 375
Score = 59.5 bits (143), Expect = 2e-09
Identities = 53/324 (16%), Positives = 106/324 (32%), Gaps = 43/324 (13%)
Query: 515 LATLHDP--MPARLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDT---------- 562
++H + A+ + + +G +V I N + + + D
Sbjct: 41 ATSMHVKPQVAAQQKMVDDGSGEVQVWRIENLELVPVDSKWLGHFYGGDCYLLLYTYLIG 100
Query: 563 ------IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFF 616
+++W G +A++DE+ S A+ + + + + + G EP F
Sbjct: 101 EKQHYLLYVWQGSQASQDEITASAYQAVILDQK----YNGEPVQIRVPMGKEPPHLMSIF 156
Query: 617 GPWDTDLWKVYLNEQEFKKIFQMSYESFTTLPKWR-RDNIKKSVYLNEQEFKKIFQMSYE 675
++ + + + + T L ++ + + E + F S +
Sbjct: 157 KG------RMVVYQGGTSRTNNLETGPSTRL--FQVQGTGANNTKAFEVPARANFLNSND 208
Query: 676 MY-GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFK 734
++ + + W GK S DE +A + + + V+G E F
Sbjct: 209 VFVLKTQSCCYLWCGKGCSGDEREMAKMVADTISRT-----EKQVVVEGQEPANFWMALG 263
Query: 735 NGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKLFILDT 794
+ P + K G T F D + +F+LD
Sbjct: 264 GKAPYANTKRLQEENLVITPRLFECSN-----KTGRFLATEIPDFNQDDLEEDDVFLLDV 318
Query: 795 DDEVIFIWIGRAANYMEKLQATKV 818
D+ +F WIG+ AN EK A
Sbjct: 319 WDQ-VFFWIGKHANEEEKKAAATT 341
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping,
actin-binding, cytos phosphoprotein, actin-binding
protein; 3.00A {Homo sapiens}
Length = 371
Score = 325 bits (834), Expect = e-104
Identities = 157/372 (42%), Positives = 218/372 (58%), Gaps = 10/372 (2%)
Query: 261 TWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHSCPQLAANTRLVDNGAGSKTVWRINN 320
WRD D+ Y K+A + D + LHS PQ+AA +VD+G+G +WR+ N
Sbjct: 2 DWRDKDQSDGFGKVYVTEKVAQIKQIPFDASKLHSSPQMAAQHNMVDDGSGKVEIWRVEN 61
Query: 321 VELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKEQTALTIQTIMKDNNDL 380
VD+ YG F+ GDCY+I Y Y G I+Y W G++ + E T T+ D L
Sbjct: 62 NGRIQVDQNSYGEFYGGDCYIILYTYPRGQIIYTWQGANATRDELTTSAFLTVQLD-RSL 120
Query: 381 NGNGVQVRIVQGKESPHFLSMFGGMAIMF------KGDHQYKLPNTFLLQVTGNNEFNTK 434
G VQ+R+ QGKE H LS+F ++ K Q P T L QV N T+
Sbjct: 121 GGQAVQIRVSQGKEPVHLLSLFKDKPLIIYKNGTSKKGGQAPAPPTRLFQVRRNLASITR 180
Query: 435 AVQVNMRGSCLNSNDVFILKK-EKAYFIWCGKGSTGDEREMAKLIAKRISKDDYNVIFEG 493
V+V++ + LNSNDVF+LK + + +IW GKG++ +E + A+ +A + K I EG
Sbjct: 181 IVEVDVDANSLNSNDVFVLKLPQNSGYIWVGKGASQEEEKGAEYVASVL-KCKTLRIQEG 239
Query: 494 QEKDEFWKTIGGKQDYASNKKLATLHDPMPARLFQISNATGRFRVEEIM-NFSQQDLIPE 552
+E +EFW ++GGK+DY ++ L T + P RL+ SN TGRF +EEI F+Q DL +
Sbjct: 240 EEPEEFWNSLGGKKDYQTSPLLETQAEDHPPRLYGCSNKTGRFVIEEIPGEFTQDDLAED 299
Query: 553 DVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTF 612
DVMLLDA + IF+W+G AN E K+S A YL+TDPS RD TPI++IKQG+EP TF
Sbjct: 300 DVMLLDAWEQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHEPPTF 359
Query: 613 TGFFGPWDTDLW 624
TG+F WD+ W
Sbjct: 360 TGWFLGWDSSKW 371
Score = 131 bits (330), Expect = 2e-33
Identities = 57/268 (21%), Positives = 103/268 (38%), Gaps = 53/268 (19%)
Query: 1 YLTGGVSSGFNHVTKKSEPKLYRIKGKRSPT--ITQMPAIDWKYFNSGDVFILDTDDEVI 58
Y G G +L++++ + I ++ D NS DVF+L
Sbjct: 150 YKNGTSKKGGQAP--APPTRLFQVRRNLASITRIVEVDV-DANSLNSNDVFVLKLPQNSG 206
Query: 59 FIWIGRAANYMEKLQATKVAQQLKTENNALALIFVEDGKELNLPEAEKTLLGVYLDLRAS 118
+IW+G+ A+ E+ A VA LK + + +++G+E PE L
Sbjct: 207 YIWVGKGASQEEEKGAEYVASVLKCK-----TLRIQEGEE---PEEFWNSL--------- 249
Query: 119 VGVKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTY 178
G K + S + + +LY CS++ G + + E+
Sbjct: 250 -GGKKDYQTSPLLETQAEDHPPRLYGCSNKTGRFVIEEIP-------------------- 288
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVR--KKK 236
G Q DL D ++D I++W+GK A++ E+ E++++A ++
Sbjct: 289 -------GEFTQDDLAEDDVMLLD-AWEQIFIWIGKDANEVEKKESLKSAKMYLETDPSG 340
Query: 237 YDSGIPVTRVVEHGEPVEFKCMFHTWRD 264
D P+ + + EP F F W
Sbjct: 341 RDKRTPIVIIKQGHEPPTFTGWFLGWDS 368
Score = 84.9 bits (209), Expect = 1e-17
Identities = 67/347 (19%), Positives = 120/347 (34%), Gaps = 76/347 (21%)
Query: 454 KKEKAYFIWCGKGSTGDEREMAKLIAKRIS-----KDDYNVIFEGQEKDEFWKTIGGKQD 508
+ + + W G +T DE + + ++ + + +G+E K
Sbjct: 88 PRGQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPL 147
Query: 509 YA---SNKKLATLHDPMPARLFQI-SNATGRFRVEEIMNFSQQDLIPEDVMLLDA-RDTI 563
K P RLFQ+ N R+ E+ + L DV +L +++
Sbjct: 148 IIYKNGTSKKGGQAPAPPTRLFQVRRNLASITRIVEV-DVDANSLNSNDVFVLKLPQNSG 206
Query: 564 FLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDL 623
++W+G A+++E K + +A L + I++G EP F G
Sbjct: 207 YIWVGKGASQEEEKGAEYVA----------SVLKCKTLRIQEGEEPEEFWNSLGGKKDYQ 256
Query: 624 WKVYLNEQE---FKKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEFKKIFQMSYEMYGTM 680
L Q +++ S ++ ++ + I ++ + +
Sbjct: 257 TSPLLETQAEDHPPRLYGCSNKT----GRFVIEEIPGEFTQDDLAEDDVMLLDAW----- 307
Query: 681 EQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGIRSN 740
+ I W+GK+ + E + KS
Sbjct: 308 -EQIFIWIGKDANEVEKK-ESLKSA----------------------------------- 330
Query: 741 RATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLW 787
Y PS RD TPI++IKQG+EP TFTG+F WD+ W
Sbjct: 331 ------KMYLETDPSGRDKRTPIVIIKQGHEPPTFTGWFLGWDSSKW 371
Score = 72.2 bits (176), Expect = 2e-13
Identities = 36/146 (24%), Positives = 53/146 (36%), Gaps = 18/146 (12%)
Query: 681 EQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGY-------- 732
Q I+ W G N + DE +A+ +V+LD L G VQ R QG E +
Sbjct: 90 GQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLII 149
Query: 733 FKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKLFIL 792
+KNG P F + + I + E D F+L
Sbjct: 150 YKNGTSKKGGQAPAPPTRLFQ-----VRRNLASITRIVEVDVDANSLNSNDV-----FVL 199
Query: 793 DTDDEVIFIWIGRAANYMEKLQATKV 818
+IW+G+ A+ E+ A V
Sbjct: 200 KLPQNSGYIWVGKGASQEEEKGAEYV 225
Score = 56.8 bits (136), Expect = 1e-08
Identities = 72/390 (18%), Positives = 121/390 (31%), Gaps = 88/390 (22%)
Query: 20 KLYRIKGKRSPTITQMPAIDWKYFNSGDVFILD---TDDEVIFIWIGRAANYMEKLQATK 76
+++R++ Q+ + F GD +I+ ++I+ W G A E +
Sbjct: 55 EIWRVENN---GRIQVDQNSYGEFYGGDCYIILYTYPRGQIIYTWQGANATRDELTTSAF 111
Query: 77 VAQQLKTE-NNALALIFVEDGKELNLPEAEKTLLGVYLDLRASVGVKGNIGESDEVVEHT 135
+ QL I V GKE P +L + G G++
Sbjct: 112 LTVQLDRSLGGQAVQIRVSQGKE---PVHLLSLFKDKPLIIYKNGTSKKGGQAPA----- 163
Query: 136 HYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTYKVTEVKTGPLYQSDLNS 195
+L+Q + ++ EV + LNS
Sbjct: 164 --PPTRLFQVR-------------------------RNLASITRIVEVDVDA---NSLNS 193
Query: 196 KDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYDSGIPVTRVVEHGEPVEF 255
D F++ + ++WVGKGAS++E A A R+ E EP EF
Sbjct: 194 NDVFVLKLPQNSGYIWVGKGASQEEEKGAEYVAS--------VLKCKTLRIQEGEEPEEF 245
Query: 256 KCMFHTWRDPDEITKSYNQYSIGKIAHLTPSKLDMASLHSCPQLAANTRLVDNGAGSKTV 315
GK + T L+ + P+L N G +
Sbjct: 246 WNSLG-----------------GKKDYQTSPLLETQAEDHPPRL----YGCSNKTGRFVI 284
Query: 316 WRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGDILYYWLGSHRSIKE-QTALTI--QT 372
I + D L+ A + ++ W+G + E + +L
Sbjct: 285 EEI-------PGEFTQDDLAEDDVMLLD----AWEQIFIWIGKDANEVEKKESLKSAKMY 333
Query: 373 IMKDNNDLNGNGVQVRIVQGKESPHFLSMF 402
+ D + + V I QG E P F F
Sbjct: 334 LETDPSGRDKRTPIVIIKQGHEPPTFTGWF 363
Score = 56.0 bits (134), Expect = 2e-08
Identities = 61/327 (18%), Positives = 108/327 (33%), Gaps = 51/327 (15%)
Query: 515 LATLHD--PMPARLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDT---------- 562
+ LH M A+ + + +G+ + + N + + D
Sbjct: 31 ASKLHSSPQMAAQHNMVDDGSGKVEIWRVENNGRIQVDQNSYGEFYGGDCYIILYTYPRG 90
Query: 563 --IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIK--QGYEPTTFTGFFGP 618
I+ W G A RDE+ S L ++ +R L + I+ QG EP F
Sbjct: 91 QIIYTWQGANATRDELTTSAFLTVQL------DRSLGGQAVQIRVSQGKEPVHLLSLFKD 144
Query: 619 WDTDLWKVYLNEQEFKKIFQMSYESFTTLPKWR----RDNIKKSVYLNEQEFKKIFQMSY 674
++K +++ + P R R N+ + E + S
Sbjct: 145 KPLIIYKNGTSKKGGQ----------APAPPTRLFQVRRNLASITRIVEVDVDANSLNSN 194
Query: 675 EMY--GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGY 732
+++ + + W+GK S +E A + + L ++ +E G E F
Sbjct: 195 DVFVLKLPQNSGYIWVGKGASQEEEKGAE----YVASVLKCKTLRIQE--GEEPEEFWNS 248
Query: 733 FKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGY-EPTTFTGFFGPWDTDLWKLFI 791
+ P K G G F D + +
Sbjct: 249 LGGKKDYQTSPLLETQAEDHPPRLYGCSN-----KTGRFVIEEIPGEFTQDDLAEDDVML 303
Query: 792 LDTDDEVIFIWIGRAANYMEKLQATKV 818
LD ++ IFIWIG+ AN +EK ++ K
Sbjct: 304 LDAWEQ-IFIWIGKDANEVEKKESLKS 329
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP:
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A
2fh4_A 1h1v_G* 1nph_A
Length = 344
Score = 293 bits (751), Expect = 1e-92
Identities = 132/344 (38%), Positives = 190/344 (55%), Gaps = 14/344 (4%)
Query: 305 LVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD----ILYYWLGSHR 360
+ D+G G K +WRI PVD YG F+ GD Y+I Y Y G I+Y W G+
Sbjct: 1 MDDDGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQS 60
Query: 361 SIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMF-GGMAIMFKG-----DHQ 414
+ E A I T D +L G VQ R+VQGKE H +S+F G I++KG Q
Sbjct: 61 TQDEVAASAILTAQLDE-ELGGTPVQSRVVQGKEPAHLMSLFGGKPMIIYKGGTSREGGQ 119
Query: 415 YKLPNTFLLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREM 474
+T L QV N+ T+AV+V + LNSND F+LK A ++W G G++ E+
Sbjct: 120 TAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGASEAEKTG 179
Query: 475 AKLIAKRISKDDYNVIFEGQEKDEFWKTIGGKQDYASNKKLA-TLHDPMPARLFQISNAT 533
A+ + + + + + EG E D FW+ +GGK Y ++ +L D P RLF SN
Sbjct: 180 AQELLRVL-RAQPVQVAEGSEPDGFWEALGGKAAYRTSPRLKDKKMDAHPPRLFACSNKI 238
Query: 534 GRFRVEEI-MNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPS 592
GRF +EE+ Q+DL +DVMLLD D +F+W+G + +E ++ A Y++TDP+
Sbjct: 239 GRFVIEEVPGELMQEDLATDDVMLLDTWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPA 298
Query: 593 NRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKVYLNEQEFKKI 636
NRD TPI V+KQG+EP +F G+F WD D W V ++ ++
Sbjct: 299 NRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWSVDPLDRAMAEL 342
Score = 132 bits (332), Expect = 7e-34
Identities = 55/276 (19%), Positives = 100/276 (36%), Gaps = 52/276 (18%)
Query: 1 YLTGGVSSGFNHVTKKSEPKLYRIKGKRSPTI--TQMPAIDWKYFNSGDVFILDTDDEVI 58
GG S + +L++++ + ++ NS D F+L T
Sbjct: 108 IYKGGTSREGGQT-APASTRLFQVRANSAGATRAVEVL-PKAGALNSNDAFVLKTPSA-A 164
Query: 59 FIWIGRAANYMEKLQATKVAQQLKTENNALALIFVEDGKELNLPEAEKTLLGVYLDLRAS 118
++W+G A+ EK A ++ + L+ + + V +G E P+ LG
Sbjct: 165 YLWVGTGASEAEKTGAQELLRVLRAQ-----PVQVAEGSE---PDGFWEALG-------- 208
Query: 119 VGVKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDGTY 178
G + + +L+ CS++ G + + EV
Sbjct: 209 -GKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPG------------------- 248
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKK--K 236
L Q DL + D ++D ++VWVGK + ++E+ EA+ +A ++
Sbjct: 249 --------ELMQEDLATDDVMLLD-TWDQVFVWVGKDSQEEEKTEALTSAKRYIETDPAN 299
Query: 237 YDSGIPVTRVVEHGEPVEFKCMFHTWRDPDEITKSY 272
D P+T V + EP F F W D
Sbjct: 300 RDRRTPITVVKQGFEPPSFVGWFLGWDDDYWSVDPL 335
Score = 95.7 bits (237), Expect = 2e-21
Identities = 65/346 (18%), Positives = 118/346 (34%), Gaps = 72/346 (20%)
Query: 454 KKEKAYFIWCGKGSTGDEREMAKLIAKRISKDDYNV-----IFEGQEKDEFWKTIGGK-- 506
++ + + W G ST DE + ++ ++ ++ + +G+E GGK
Sbjct: 47 RQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLFGGKPM 106
Query: 507 ---QDYASNKKLATLHDPMPARLFQI-SNATGRFRVEEIMNFSQQDLIPEDVMLLDARDT 562
+ S + T P RLFQ+ +N+ G R E++ + L D +L
Sbjct: 107 IIYKGGTSREGGQT--APASTRLFQVRANSAGATRAVEVLPKAGA-LNSNDAFVLKTPSA 163
Query: 563 IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTD 622
+LW+G A+ E + L R L + + +G EP F G
Sbjct: 164 AYLWVGTGASEAEKTGAQELL----------RVLRAQPVQVAEGSEPDGFWEALGGKAAY 213
Query: 623 LWKVYLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEFKKIFQMSYEMYGTMEQ 682
L +++ + + ++ + + + + + +
Sbjct: 214 RTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLL------DTWD 267
Query: 683 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGIRSNRA 742
+ W+GK++ +E A
Sbjct: 268 QVFVWVGKDSQEEEKT------------------------------------------EA 285
Query: 743 TDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWK 788
Y P+NRD TPI V+KQG+EP +F G+F WD D W
Sbjct: 286 LTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLGWDDDYWS 331
Score = 79.9 bits (196), Expect = 3e-16
Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 9/153 (5%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
I +Y G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E
Sbjct: 37 IILYNYRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAH 96
Query: 729 FRGYFKNG---IRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTD 785
F I + P + + E G D
Sbjct: 97 LMSLFGGKPMIIYKGGTSREGGQTAPASTRLFQVRANSAGATRAVEVLPKAGALNSNDA- 155
Query: 786 LWKLFILDTDDEVIFIWIGRAANYMEKLQATKV 818
F+L T ++W+G A+ EK A ++
Sbjct: 156 ----FVLKTPSA-AYLWVGTGASEAEKTGAQEL 183
Score = 66.4 bits (161), Expect = 8e-12
Identities = 70/352 (19%), Positives = 110/352 (31%), Gaps = 69/352 (19%)
Query: 173 DEDGTYKVTEVKTGPLYQSDLNSKDSFII-------DQNGRAIWVWVGKGASKKERIEAI 225
+ V G Y DS+II + G+ I+ W G +++ E +
Sbjct: 15 EGSNKVPVDPATYGQFY-----GGDSYIILYNYRHGGRQGQIIYNWQGAQSTQDEVAASA 69
Query: 226 RNAHGFVRKKKYDSGIPVT-RVVEHGEPVEFKCMFHTWRDPDEITKSYNQYSIGKIAHLT 284
+ + G PV RVV+ EP + I G
Sbjct: 70 ILT---AQLDEELGGTPVQSRVVQGKEPAHL---MSLFGGKPMIIYK------GG----- 112
Query: 285 PSKLDMASLHSCPQLAANTRLVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHY 344
S A+TRL A S R V + G S D +++
Sbjct: 113 ------TSREGGQTAPASTRLFQVRANSAGATRAVEVLPKA------GALNSNDAFVLK- 159
Query: 345 QYAAGDILYYWLGSHRSIKEQT-ALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFG 403
Y W+G+ S E+T A + +++ + +G E F G
Sbjct: 160 ---TPSAAYLWVGTGASEAEKTGAQELLRVLRAQPVQ--------VAEGSEPDGFWEALG 208
Query: 404 GMAIMFKG----DHQYKLPNTFLLQVTGNN-EFNTKAVQVNMRGSCLNSNDVFILKKEKA 458
G A D + L + F + V + L ++DV +L
Sbjct: 209 GKAAYRTSPRLKDKKMDAHPPRLFACSNKIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ 268
Query: 459 YFIWCGKGSTGDEREMAKLIAKRISKDDYN---------VIFEGQEKDEFWK 501
F+W GK S +E+ A AKR + D V+ +G E F
Sbjct: 269 VFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVG 320
Score = 52.9 bits (126), Expect = 2e-07
Identities = 59/307 (19%), Positives = 97/307 (31%), Gaps = 41/307 (13%)
Query: 531 NATGRFRVEEIMNFSQQDLIPEDVMLLDARDT----------------IFLWLGDKANRD 574
+ TG+ ++ I ++ + P D+ I+ W G ++ +D
Sbjct: 4 DGTGQKQIWRIEGSNKVPVDPATYGQFYGGDSYIILYNYRHGGRQGQIIYNWQGAQSTQD 63
Query: 575 EVKQSTNLAIEYLKTDPSNRDLDTPIMV-IKQGYEPTTFTGFFGPWDTDLWKVYLNEQEF 633
EV S L + TP+ + QG EP FG + + +
Sbjct: 64 EVAASAILTAQL-----DEELGGTPVQSRVVQGKEPAHLMSLFGGK-----PMIIYKGGT 113
Query: 634 KKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEFKKIFQMSYEMY-GTMEQHIHFWLGKNT 692
+ + + T L R N + E K S + + + W+G
Sbjct: 114 SREGGQTAPASTRL-FQVRANSAGATRAVEVLPKAGALNSNDAFVLKTPSAAYLWVGTGA 172
Query: 693 STDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGIRSNRATDPTDTYYPF 752
S E A EL L PVQ E G E F + D
Sbjct: 173 SEAEKTGAQ----ELLRVLRAQPVQVAE--GSEPDGFWEALGGKAAYRTSPRLKDKKMDA 226
Query: 753 YPSNRDLDTPIMVIKQGY-EPTTFTGFFGPWDTDLWKLFILDTDDEVIFIWIGRAANYME 811
+P + K G G D + +LDT D+ +F+W+G+ + E
Sbjct: 227 HPPRLFACSN----KIGRFVIEEVPGELMQEDLATDDVMLLDTWDQ-VFVWVGKDSQEEE 281
Query: 812 KLQATKV 818
K +A
Sbjct: 282 KTEALTS 288
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS
structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1
d.109.1.1 d.109.1.1 PDB: 1jhw_A
Length = 347
Score = 200 bits (508), Expect = 1e-57
Identities = 92/330 (27%), Positives = 145/330 (43%), Gaps = 29/330 (8%)
Query: 314 TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD-ILYYWLGSHRSIKEQTALTIQT 372
VWR+ ++ PV + GVFFSGD YL+ + L+ W+G S EQ A +
Sbjct: 22 HVWRVEKLKPVPVAQENQGVFFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLA 81
Query: 373 IMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIM--------FKGDHQYKLPNTFLLQ 424
+ D + L G VQ R VQG ES F+S F FK ++ L Q
Sbjct: 82 VQLD-DYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQ 140
Query: 425 VTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISK 484
V G N +A + + N+ D FIL + F WCG S ER A+ +A I
Sbjct: 141 VKGKK--NIRATERALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRD 198
Query: 485 DDYN------VIFEGQEKDEFWKTIGGKQDYASNK----KLATLHDPMPARLFQISNATG 534
+ ++ +G+E E + +G K A + A L+++S+ATG
Sbjct: 199 SERQGKAQVEIVTDGEEPAEMIQVLGPKPALKEGNPEEDLTADKANAQAAALYKVSDATG 258
Query: 535 RFRVEEIMN---FSQQDLIPEDVMLLDA--RDTIFLWLGDKANRDEVKQSTNLAIEYLKT 589
+ + ++ + F+ + LI +D +LD I++W G KAN E + + +A ++
Sbjct: 259 QMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISR 318
Query: 590 DPSNRDLDTPIMVIKQGYEPTTFTGFFGPW 619
+T + ++ QG E F FF W
Sbjct: 319 M--QYAPNTQVEILPQGRESPIFKQFFKDW 346
Score = 152 bits (385), Expect = 8e-41
Identities = 73/268 (27%), Positives = 113/268 (42%), Gaps = 41/268 (15%)
Query: 1 YLTGGVSSGFNHVTKK--SEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVI 58
Y GGV SGF HV +LY++KGK++ T+ ++W FN+GD FILD I
Sbjct: 116 YQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERA-LNWDSFNTGDCFILDLGQN-I 173
Query: 59 FIWIGRAANYMEKLQATKVAQQLKTENNA--LALIFVEDGKELNLPEAEKTLLGVYLDLR 116
F W G +N +E+ +A +A ++ + V DG+E P +LG L+
Sbjct: 174 FAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEE---PAEMIQVLGPKPALK 230
Query: 117 ASVGVKGNIGESDEVVEHTHYNHLKLYQCSDEDGTYKVTEVKTGPLYQSDLNSKCSDEDG 176
E D + + LY+ SD G +T+V
Sbjct: 231 EGNP------EEDLTADKANAQAAALYKVSDATGQMNLTKVADS---------------- 268
Query: 177 TYKVTEVKTGPLYQSDLNSKDSFIIDQ-NGRAIWVWVGKGASKKERIEAIRNAHGFVRKK 235
P L S D F++D I++W G+ A++KER A++ A GF+ +
Sbjct: 269 ---------SPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRM 319
Query: 236 KYDSGIPVTRVVEHGEPVEFKCMFHTWR 263
+Y V + + E FK F W+
Sbjct: 320 QYAPNTQVEILPQGRESPIFKQFFKDWK 347
Score = 88.8 bits (219), Expect = 4e-19
Identities = 55/332 (16%), Positives = 109/332 (32%), Gaps = 38/332 (11%)
Query: 429 NEFNTKAVQVNMRGSCLNSNDVFIL-----KKEKAYFIWCGKGSTGDEREMAKLIAKRIS 483
+ V +G S D +++ ++ +W G+ S+ DE+ ++A ++
Sbjct: 27 EKLKPVPVAQENQGV-FFSGDSYLVLHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLD 85
Query: 484 KDDYNV-----IFEGQEKDEFWKTIGGKQDYASNKKLATLH-----DPMPARLFQISNAT 533
+G E D F Y + + + RL+Q+
Sbjct: 86 DYLGGRPVQHREVQGNESDLFMSYFPRGLKYQEGGVESGFKHVVPNEVVVQRLYQVK-GK 144
Query: 534 GRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAIEYLKTDPSN 593
R E + D +LD IF W G K+N E ++ +LA+ ++
Sbjct: 145 KNIRATER-ALNWDSFNTGDCFILDLGQNIFAWCGGKSNILERNKARDLALAIRDSERQG 203
Query: 594 RDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKVYLNEQEFKKIFQMSYESFTTLPKWRRD 653
+ + ++ G EP G L + E + ++
Sbjct: 204 K---AQVEIVTDGEEPAEMIQVLG-PKPALKEGNPEEDLTADKANAQAAAL-----YKVS 254
Query: 654 NIKKSVYLNEQEFKKIFQMS-------YEMYGTMEQHIHFWLGKNTSTDEAAVA---AYK 703
+ + L + F + + + + I+ W G+ + E A A
Sbjct: 255 DATGQMNLTKVADSSPFALELLISDDCFVLDNGLCGKIYIWKGRKANEKERQAALQVAEG 314
Query: 704 SVELDNYLNGSPVQHREVQGGESIRFRGYFKN 735
+ Y + V+ QG ES F+ +FK+
Sbjct: 315 FISRMQYAPNTQVE-ILPQGRESPIFKQFFKD 345
Score = 84.2 bits (207), Expect = 2e-17
Identities = 44/150 (29%), Positives = 61/150 (40%), Gaps = 17/150 (11%)
Query: 677 YGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNG 736
H+H W+G+ +S DE A +V+LD+YL G PVQHREVQG ES F YF G
Sbjct: 54 GPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRG 113
Query: 737 I-------RSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDLWKL 789
+ S + I ++ +F D
Sbjct: 114 LKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFN----TGDC----- 164
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKVI 819
FILD IF W G +N +E+ +A +
Sbjct: 165 FILDLGQN-IFAWCGGKSNILERNKARDLA 193
Score = 56.8 bits (136), Expect = 1e-08
Identities = 46/262 (17%), Positives = 88/262 (33%), Gaps = 17/262 (6%)
Query: 563 IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTD 622
+ LW+G +++RDE LA++ QG E F +F
Sbjct: 61 LHLWIGQQSSRDEQGACAVLAVQLDDY----LGGRPVQHREVQGNESDLFMSYFP----- 111
Query: 623 LWKVYLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYLNEQEFKKIFQMSYEMY-GTME 681
+ E + F+ + + + + KK++ E+ + + + +
Sbjct: 112 -RGLKYQEGGVESGFKHVVPNEVVVQRLYQVKGKKNIRATERALNWDSFNTGDCFILDLG 170
Query: 682 QHIHFWLGKNTSTDEAAVAAYKSVEL-DNYLNGSPVQHREVQGGESIRFRGYFKNGIRSN 740
Q+I W G ++ E A ++ + D+ G G E +
Sbjct: 171 QNIFAWCGGKSNILERNKARDLALAIRDSERQGKAQVEIVTDGEEPAEMIQVL-GPKPAL 229
Query: 741 RATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDL---WKLFILDTDDE 797
+ +P + + + + G T P+ +L F+LD
Sbjct: 230 KEGNPEEDLTADKANAQAAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDNGLC 289
Query: 798 V-IFIWIGRAANYMEKLQATKV 818
I+IW GR AN E+ A +V
Sbjct: 290 GKIYIWKGRKANEKERQAALQV 311
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl
histidine, ATP-binding, cytoskeleton, nucleotide-BIN
phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP:
d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A*
1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S*
1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S*
3a5o_S*
Length = 128
Score = 100 bits (250), Expect = 3e-25
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 314 TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD-----ILYYWLGSHRSIKEQTAL 368
+WR+ +L PV +YG FF+GD Y+I + L+YWLG+ S E A
Sbjct: 21 QIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAA 80
Query: 369 TIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMFKG 411
I T+ D+ LNG VQ R VQG ES FL F KG
Sbjct: 81 AIFTVQLDDY-LNGRAVQHREVQGFESATFLGYFKSGLKYKKG 122
Score = 80.3 bits (198), Expect = 4e-18
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
I + G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES
Sbjct: 49 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 108
Query: 729 FRGYFKNGIR 738
F GYFK+G++
Sbjct: 109 FLGYFKSGLK 118
Score = 29.1 bits (65), Expect = 2.4
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 563 IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGP 618
+ WLG++ ++DE + ++ + QG+E TF G+F
Sbjct: 64 LHYWLGNECSQDESGAAAIFTVQLDDY----LNGRAVQHREVQGFESATFLGYFKS 115
Score = 28.3 bits (63), Expect = 5.0
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 444 CLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISK--DDYNVIF---EGQEKDE 498
L + + + W G + DE A + ++ + V +G E
Sbjct: 49 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 108
Query: 499 FWKTIGGKQDY 509
F Y
Sbjct: 109 FLGYFKSGLKY 119
Score = 28.0 bits (62), Expect = 6.8
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 10 FNHVTKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFIL--------DTDDEVIFIW 61
F K+ +++R++ + +P + F +GD +++ + W
Sbjct: 11 FLKAGKEPGLQIWRVEKFD---LVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYW 67
Query: 62 IGRAANYMEKLQATKVAQQLKTENNALALIF-VEDGKE 98
+G + E A QL N A+ G E
Sbjct: 68 LGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFE 105
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding
protein, cytoskeletal protein; NMR {Gallus gallus} SCOP:
d.109.1.1 PDB: 2vil_A
Length = 126
Score = 98.2 bits (244), Expect = 2e-24
Identities = 41/113 (36%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 303 TRLVDNGAGSKTVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD----ILYYWLGS 358
T +D +WRI N+E+ PV YG F+ GDCY++ G ++YWLG
Sbjct: 8 TGKLDKTTPGIQIWRIENMEMVPVPTKSYGNFYEGDCYVLLSTRKTGSGFSYNIHYWLGK 67
Query: 359 HRSIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMFKG 411
+ S EQ A I T D L VQ R VQG ES F + F I +G
Sbjct: 68 NSSQDEQGAAAIYTTQMD-EYLGSVAVQHREVQGHESETFRAYFKQGLIYKQG 119
Score = 77.8 bits (191), Expect = 3e-17
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
+ + + +IH+WLGKN+S DE AA + ++D YL VQHREVQG ES
Sbjct: 46 VLLSTRKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESET 105
Query: 729 FRGYFKNGIR 738
FR YFK G+
Sbjct: 106 FRAYFKQGLI 115
Score = 29.6 bits (66), Expect = 1.9
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 4/56 (7%)
Query: 563 IFLWLGDKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGP 618
I WLG +++DE + + + QG+E TF +F
Sbjct: 61 IHYWLGKNSSQDEQGAAAIYTTQMDEY----LGSVAVQHREVQGHESETFRAYFKQ 112
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle
protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP:
d.109.1.1 PDB: 2ff6_G*
Length = 150
Score = 95.1 bits (236), Expect = 5e-23
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 314 TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD-----ILYYWLGSHRSIKEQTAL 368
+WR+ +L PV +YG FF+GD Y+I + L+YWLG+ S E A
Sbjct: 40 QIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAA 99
Query: 369 TIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMFKG 411
I T+ D+ LNG VQ R VQG ES FL F KG
Sbjct: 100 AIFTVQLDDY-LNGRAVQHREVQGFESATFLGYFKSGLKYKKG 141
Score = 77.0 bits (189), Expect = 1e-16
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
I + G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES
Sbjct: 68 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 127
Query: 729 FRGYFKNGIR 738
F GYFK+G++
Sbjct: 128 FLGYFKSGLK 137
Score = 29.2 bits (65), Expect = 2.9
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 1 YLTGGVSSGFNHV 13
Y GGV+SGF HV
Sbjct: 138 YKKGGVASGFKHV 150
Score = 28.4 bits (63), Expect = 5.3
Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 444 CLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISK--DDYNV---IFEGQEKDE 498
L + + + W G + DE A + ++ + V +G E
Sbjct: 68 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 127
Query: 499 FWKTIGGKQDY 509
F Y
Sbjct: 128 FLGYFKSGLKY 138
Score = 28.0 bits (62), Expect = 7.2
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 12/98 (12%)
Query: 10 FNHVTKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFIL--------DTDDEVIFIW 61
F K+ +++R++ + +P + F +GD +++ + W
Sbjct: 30 FLKAGKEPGLQIWRVEKFD---LVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYW 86
Query: 62 IGRAANYMEKLQATKVAQQLKTENNALALIF-VEDGKE 98
+G + E A QL N A+ G E
Sbjct: 87 LGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFE 124
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin
beta-4; structural protein; HET: ATP; 2.00A {Homo
sapiens} SCOP: d.109.1.1
Length = 147
Score = 94.7 bits (235), Expect = 5e-23
Identities = 40/103 (38%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 314 TVWRINNVELEPVDKTMYGVFFSGDCYLIHYQYAAGD-----ILYYWLGSHRSIKEQTAL 368
+WR+ +L PV +YG FF+GD Y+I + L+YWLG+ S E A
Sbjct: 18 QIWRVEKFDLVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLHYWLGNECSQDESGAA 77
Query: 369 TIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMFKG 411
I T+ D+ LNG VQ R VQG ES FL F KG
Sbjct: 78 AIFTVQLDDY-LNGRAVQHREVQGFESATFLGYFKSGLKYKKG 119
Score = 75.8 bits (186), Expect = 2e-16
Identities = 34/70 (48%), Positives = 46/70 (65%)
Query: 669 IFQMSYEMYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 728
I + G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES
Sbjct: 46 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 105
Query: 729 FRGYFKNGIR 738
F GYFK+G++
Sbjct: 106 FLGYFKSGLK 115
Score = 29.6 bits (66), Expect = 2.1
Identities = 17/100 (17%), Positives = 34/100 (34%), Gaps = 12/100 (12%)
Query: 8 SGFNHVTKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFIL--------DTDDEVIF 59
F K+ +++R++ + +P + F +GD +++ +
Sbjct: 6 PEFLKAGKEPGLQIWRVEKFD---LVPVPTNLYGDFFTGDAYVILKTVQLRNGNLQYDLH 62
Query: 60 IWIGRAANYMEKLQATKVAQQLKTENNALALIF-VEDGKE 98
W+G + E A QL N A+ G E
Sbjct: 63 YWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFE 102
Score = 28.8 bits (64), Expect = 4.0
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 13/98 (13%)
Query: 444 CLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKRISK--DDYNVIF---EGQEKDE 498
L + + + W G + DE A + ++ + V +G E
Sbjct: 46 ILKTVQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESAT 105
Query: 499 FWKTIGGKQDYAS-------NKKLATLHDPMPA-RLFQ 528
F Y +P+P+ +
Sbjct: 106 FLGYFKSGLKYKKGGVASGFKHVETQEKNPLPSKETIE 143
Score = 28.1 bits (62), Expect = 6.4
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 1 YLTGGVSSGFNHVTKKSEPKLYRIKGKR 28
Y GGV+SGF HV E + +
Sbjct: 116 YKKGGVASGFKHV----ETQEKNPLPSK 139
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP:
d.109.1.1 PDB: 1svr_A 1svy_A
Length = 114
Score = 91.4 bits (227), Expect = 4e-22
Identities = 32/104 (30%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 8 SGFNHV-TKKSEPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAA 66
SGFNHV + +P+L I G ++ + ++P + NSGD F+LD I+ + G +
Sbjct: 1 SGFNHVKPTEYKPRLLHISGDKNAKVAEVP-LATSSLNSGDCFLLDAGLT-IYQFNGSKS 58
Query: 67 NYMEKLQATKVAQQLKTENNALALIFVEDGKELNLPEAEKTLLG 110
+ EK +A +VA+ + E L + V + ++P LLG
Sbjct: 59 SPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDIPAEFWKLLG 102
Score = 81.4 bits (201), Expect = 1e-18
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 422 LLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKR 481
LL ++G+ N K +V + S LNS D F+L + + G S+ E+ A +A+
Sbjct: 15 LLHISGDK--NAKVAEVPLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARA 72
Query: 482 ISKDDYN-------VIFEGQEKDEFWKTIGGKQDYASNK 513
I + + EFWK +GGK A+
Sbjct: 73 IDAERKGLPKVEVFCETDSDIPAEFWKLLGGKGAIAAKH 111
Score = 57.1 bits (138), Expect = 4e-10
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYD 238
KV EV PL S LNS D F++D G I+ + G +S +E+ +A A ++K
Sbjct: 25 KVAEV---PLATSSLNSGDCFLLD-AGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGL 80
Query: 239 SGIPVTRVVEHGEPVEF 255
+ V + P EF
Sbjct: 81 PKVEVFCETDSDIPAEF 97
Score = 52.5 bits (126), Expect = 1e-08
Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 4/99 (4%)
Query: 520 DPMPARLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQS 579
RL IS +V E+ + L D LLDA TI+ + G K++ E K
Sbjct: 9 TEYKPRLLHIS-GDKNAKVAEV-PLATSSLNSGDCFLLDAGLTIYQFNGSKSSPQE-KNK 65
Query: 580 TNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGP 618
+ + + P F G
Sbjct: 66 AAEVARAIDAERKGL-PKVEVFCETDSDIPAEFWKLLGG 103
Score = 39.8 bits (93), Expect = 4e-04
Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 5/72 (6%)
Query: 336 SGDCYLIHYQYAAGDILYYWLGSHRSIKEQT-ALTIQTIMKDNNDLNGNGVQVRIVQGKE 394
SGDC+L+ AG +Y + GS S +E+ A + +
Sbjct: 38 SGDCFLLD----AGLTIYQFNGSKSSPQEKNKAAEVARAIDAERKGLPKVEVFCETDSDI 93
Query: 395 SPHFLSMFGGMA 406
F + GG
Sbjct: 94 PAEFWKLLGGKG 105
Score = 35.2 bits (81), Expect = 0.016
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKVI 819
F+LD I+ + G ++ EK +A +V
Sbjct: 42 FLLDAGLT-IYQFNGSKSSPQEKNKAAEVA 70
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding
protein, familial amyloi finnish type, cadmium binding,
metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Length = 104
Score = 89.4 bits (222), Expect = 1e-21
Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 8/97 (8%)
Query: 422 LLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIWCGKGSTGDEREMAKLIAKR 481
L QV G +A +V + N+ D FIL WCG S ER A ++K
Sbjct: 5 LFQVKGRR--VVRATEVPVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKG 62
Query: 482 ISKDDYN------VIFEGQEKDEFWKTIGGKQDYASN 512
I ++ + V EG E + + +G K +
Sbjct: 63 IRDNERSGRARVHVSEEGTEPEAMLQVLGPKPALPAG 99
Score = 84.8 bits (210), Expect = 6e-20
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 18 EPKLYRIKGKRSPTITQMPAIDWKYFNSGDVFILDTDDEVIFIWIGRAANYMEKLQATKV 77
+L+++KG+R T++P + W+ FN+GD FILD + I W G +N E+L+AT+V
Sbjct: 2 VQRLFQVKGRRVVRATEVP-VSWESFNNGDCFILDLGNN-IHQWCGSNSNRYERLKATQV 59
Query: 78 AQQLK-TENNALA-LIFVEDGKELNLPEAEKTLLG 110
++ ++ E + A + E+G E PEA +LG
Sbjct: 60 SKGIRDNERSGRARVHVSEEGTE---PEAMLQVLG 91
Score = 59.8 bits (145), Expect = 3e-11
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)
Query: 525 RLFQISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKANRDEVKQSTNLAI 584
RLFQ+ R E+ S + D +LD + I W G +NR E ++T ++
Sbjct: 4 RLFQVK-GRRVVRATEV-PVSWESFNNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSK 61
Query: 585 EYLKTDPSNRDLDTPIMVIKQGYEPTTFTGFFGP 618
+ S R + V ++G EP GP
Sbjct: 62 GIRDNERSGR---ARVHVSEEGTEPEAMLQVLGP 92
Score = 54.0 bits (130), Expect = 4e-09
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 179 KVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRNAHGFVRKKKYD 238
+ TEV P+ N+ D FI+D G I W G +++ ER++A + + G +
Sbjct: 15 RATEV---PVSWESFNNGDCFILD-LGNNIHQWCGSNSNRYERLKATQVSKGI--RDNER 68
Query: 239 SGIPVTRVVEHG-EPVEF 255
SG V E G EP
Sbjct: 69 SGRARVHVSEEGTEPEAM 86
Score = 46.3 bits (110), Expect = 1e-06
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 336 SGDCYLIHYQYAAGDILYYWLGSHRSIKEQT-ALTIQTIMKDNNDLNGNGVQVRIVQGKE 394
+GDC+++ G+ ++ W GS+ + E+ A + ++DN V V +G E
Sbjct: 28 NGDCFILD----LGNNIHQWCGSNSNRYERLKATQVSKGIRDNERSGRARVHV-SEEGTE 82
Query: 395 SPHFLSMFGGMA 406
L + G
Sbjct: 83 PEAMLQVLGPKP 94
Score = 34.4 bits (79), Expect = 0.023
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 790 FILDTDDEVIFIWIGRAANYMEKLQATKV 818
FILD + I W G +N E+L+AT+V
Sbjct: 32 FILDLGNN-IHQWCGSNSNRYERLKATQV 59
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding;
NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Length = 68
Score = 55.1 bits (133), Expect = 5e-10
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
+L+ ++F ++F MS E F L W+R+ +KK L
Sbjct: 33 HLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASL 67
Score = 31.6 bits (72), Expect = 0.11
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 653 DNIKKSVYLNEQEFKKIFQMSYEMYGTM 680
D ++ +L+ ++F ++F MS E +G +
Sbjct: 26 DRMRLERHLSAEDFSRVFAMSPEEFGKL 53
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping,
actin-binding, alternative splicing, calcium, cytoplasm,
cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Length = 67
Score = 55.0 bits (133), Expect = 6e-10
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
YL +++F+ M+ + + LP W++ N+KK+ L
Sbjct: 32 YLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKGL 66
Score = 31.5 bits (72), Expect = 0.13
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 653 DNIKKSVYLNEQEFKKIFQMSYEMYGTM 680
D +K +YL +++F+ M+ + Y +
Sbjct: 25 DPLKLEIYLTDEDFEFALDMTRDEYNAL 52
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus
gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A
1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Length = 67
Score = 54.8 bits (132), Expect = 7e-10
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
+L++++FK +F M+ +F LP W++ N+KK L
Sbjct: 32 HLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGL 66
Score = 31.7 bits (72), Expect = 0.095
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 653 DNIKKSVYLNEQEFKKIFQMSYEMYGTM 680
D K +L++++FK +F M+ + +
Sbjct: 25 DPSAKENHLSDEDFKAVFGMTRSAFANL 52
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton,
headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Length = 37
Score = 53.4 bits (129), Expect = 9e-10
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
YL+EQ+F +F ++ F LP W++ +KK L
Sbjct: 2 YLSEQDFVSVFGITRGQFAALPGWKQLQMKKEKGL 36
Score = 29.2 bits (66), Expect = 0.41
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 660 YLNEQEFKKIFQMSYEMYGTM 680
YL+EQ+F +F ++ + +
Sbjct: 2 YLSEQDFVSVFGITRGQFAAL 22
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, structural protein; NMR {Homo sapiens}
SCOP: a.14.1.1 PDB: 2l3x_A
Length = 88
Score = 54.9 bits (132), Expect = 1e-09
Identities = 12/35 (34%), Positives = 22/35 (62%)
Query: 627 YLNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
+L+++EF ++F M+ F L W+R+ +KK L
Sbjct: 47 HLSQEEFYQVFGMTISEFDRLALWKRNELKKQARL 81
Score = 32.6 bits (74), Expect = 0.088
Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 9/70 (12%)
Query: 617 GPWDTDLWKVYLNEQEFKKIFQMSYESFTTLPKWRR------DNIKKSVYLNEQEFKKIF 670
G + V +E+K YE + R D + +L+++EF ++F
Sbjct: 1 GSSGSSGNAVNWGMREYKIY---PYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVF 57
Query: 671 QMSYEMYGTM 680
M+ + +
Sbjct: 58 GMTISEFDRL 67
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A
1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B*
3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Length = 35
Score = 48.9 bits (117), Expect = 4e-08
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 628 LNEQEFKKIFQMSYESFTTLPKWRRDNIKKSVYL 661
L++++FK +F M+ +F LP W + ++KK L
Sbjct: 1 LSDEDFKAVFGMTRSAFANLPLWLQQHLKKEKGL 34
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 0.001
Identities = 63/498 (12%), Positives = 117/498 (23%), Gaps = 188/498 (37%)
Query: 411 GDHQYKLPNTFLLQVTGNN---EFNTKAVQVNMRGSCLNSNDV-FILK----KEKAYFI- 461
G+HQY+ +L V + F+ K VQ + S L+ ++ I+ +
Sbjct: 12 GEHQYQ--YKDILSVFEDAFVDNFDCKDVQDMPK-SILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 462 W--CGKGSTGDEREMAKLIAKRISKDDYNVIFEGQEKDEFWKTIGGKQDYASNKKLATLH 519
W K ++ + +++ + +Y + K E + + Y + +
Sbjct: 69 WTLLSKQEEMVQKFVEEVL-----RINYKFLMS-PIKTEQRQPSMMTRMYIEQRD-RLYN 121
Query: 520 DPMPARLFQISNATGRFRVEEIMNFSQ--QDLIPED-------------VMLLDA-RDT- 562
D + +S R++ + Q +L P + LD
Sbjct: 122 DNQVFAKYNVS------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 563 --------IFLWLG---DKANRDEVKQSTNLAIEYLKTDPSNRDLDTPIMVIKQGYEPTT 611
IF WL + ++ L + DP+ IK
Sbjct: 176 VQCKMDFKIF-WLNLKNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 612 --FTGFFGP-------------WDTDLWKVY----------------------------- 627
+ W +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 628 ------LNEQE----FKKIFQMSYESFTTLPK-----------------------WRRDN 654
L E K + LP+ W DN
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQD---LPREVLTTNPRRLSIIAESIRDGLATW--DN 346
Query: 655 IKKSVYLNEQEFKKIFQMS------------YEMYGTMEQHIH--------FWLGKNTST 694
K ++N + I + S ++ H W S
Sbjct: 347 WK---HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD 403
Query: 695 DEAAV---AAYKSVELDN----------YL------NGSPVQHREVQGGESIRFRGYFKN 735
V Y VE YL HR + +I + + +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIP-KTFDSD 462
Query: 736 GIRSNRATDPTDTYYPFY 753
+ D Y+ +
Sbjct: 463 DL----IPPYLDQYFYSH 476
Score = 41.4 bits (96), Expect = 0.001
Identities = 72/459 (15%), Positives = 135/459 (29%), Gaps = 133/459 (28%)
Query: 58 IFIWIG-----RAANYMEKLQA--TKVAQQLKTENNALALIF--VEDGKE-----LNLPE 103
IF W+ +E LQ ++ + ++ + I + + L
Sbjct: 184 IF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 104 AEKTLLGVYLD-------LRA-SVGVK-----GNIGESDEVVEHTHYNHLKLYQCSDEDG 150
E LL V L A ++ K +D + H+ L +
Sbjct: 243 YENCLL-V-LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA-ATTTHISL-----DHH 294
Query: 151 TYKVTEVKTGPLYQSDLNSKCSDEDGTYKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWV 210
+ +T + L L+ + D + T P S II
Sbjct: 295 SMTLTPDEVKSLLLKYLDCRPQDL----PREVLTTNPRRLS--------II--------- 333
Query: 211 WVGKGASKKERIEAIRNAHGFVRKKKYDSGIPVTRVVEHGEPVEFKCMFHTWRDPDEITK 270
S ++ + N + D +T ++E +P E K
Sbjct: 334 ----AESIRDGLATWDN----WKHVNCD---KLTTIIE---------SSLNVLEPAEYRK 373
Query: 271 SYNQYSI-GKIAHLTPSKLDM---ASLHSCPQLAANT----RLVDNGAGSKTVWRINNVE 322
+++ S+ AH+ L + + S + N LV+ T+ I ++
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI-SIPSIY 432
Query: 323 LE-----PVDKTMYGVFFSGDCYLIHYQYAAGDIL-------YYW-LGSHRSIKEQTALT 369
LE + ++ D Y I + + D++ +Y +G H E
Sbjct: 433 LELKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERM 490
Query: 370 I-------------QTIMKDNNDLNGNG------VQVRIVQG---KESPHFLSMFGGMAI 407
Q I D+ N +G Q++ + P + + AI
Sbjct: 491 TLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN--AI 548
Query: 408 M-F---KGDHQYKLPNTFLLQVTGNNE----FNTKAVQV 438
+ F ++ T LL++ E F QV
Sbjct: 549 LDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 32.1 bits (72), Expect = 0.93
Identities = 57/465 (12%), Positives = 124/465 (26%), Gaps = 147/465 (31%)
Query: 196 KDSFIIDQNGRAI-WVWVGKGASKKERIEAIRNAH------------------------- 229
+ + I W+ + S + +E ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 230 ----GFVRKKKYDSGIPVTRVVEHGEPVE---FKC-MFHTWRD----------------- 264
++ K Y++ + V V++ + C + T R
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 265 ---PDEITKSYNQYSIGKIAHLTPSKL--DMASLHSCPQL----AANTRLVDNGAGSKTV 315
+T + + K P L ++ + + P+ A + R D A
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSIIAESIR--DGLATWDN- 346
Query: 316 WRINNVE------------LEPVD-KTMYGVF--FSGDCYLIHYQYAAGDIL-YYWLGSH 359
W+ N + LEP + + M+ F + I +L W
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTI-----LLSLIWFDV- 399
Query: 360 RSIKEQTALTIQTIMKDNNDLNGNGVQVRIVQGKESPHFLSMFGGMAIMFKGDHQYKLPN 419
+ + + + + + + I S + + + K +++Y L
Sbjct: 400 ---IKSDVMVVVNKLHKYSLVEKQPKESTI-----SIPSIY----LELKVKLENEYALHR 447
Query: 420 TFLLQVTGNNEFNTKAVQVNMRGSCLNSNDVFILKKEKAYFIW------CGKGSTGDERE 473
+ + + +N +S+D I YF
Sbjct: 448 SIV------DHYNIP--------KTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 474 MAKL------IAKRISKDDYNVIFEGQEKDEFWKTIGGKQDYASNKKLATLHDPMPARLF 527
+ + ++I D G + Q K +DP RL
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTL-------QQLKFYKPYICDNDPKYERL- 544
Query: 528 QISNATGRFRVEEIMNFSQQDLIPEDVMLLDARDTIFLWLGDKAN 572
V I++F + I E+++ D + + L +
Sbjct: 545 ----------VNAILDFLPK--IEENLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.030
Identities = 53/305 (17%), Positives = 101/305 (33%), Gaps = 88/305 (28%)
Query: 494 QEKDEFWKTIGGKQDYASNKKLATLHDPM-PARLFQISNATGRFRVEEIMNFSQQDLIPE 552
Q +++F K + + A +P PA L G+F + + + P
Sbjct: 32 QLQEQFNKILPEPTE-----GFAADDEPTTPAELV------GKF-----LGYVSSLVEPS 75
Query: 553 DV--------MLLDARDTIFLWLGD---------KANRDEVKQSTNLAIEYLKTDP-SNR 594
V + L + +L D + N + ++ L Y+ + R
Sbjct: 76 KVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKR 135
Query: 595 DLDTP-----IMVIKQGYEPTTFTGFFGPWDTDLWKVYLNE-QEFKKIFQMSYESFTTLP 648
D + +G F G +TD Y E ++ Y+++ L
Sbjct: 136 PFDKKSNSALFRAVGEG-NAQLVAIFGGQGNTD---DYFEELRDL-------YQTYHVLV 184
Query: 649 KWRRDNIKKS-VYLNE-----QEFKKIFQMSYEMYGTMEQHIHFWL-GKNTSTDEAAVA- 700
D IK S L+E + +K+F +I WL + + D+ +
Sbjct: 185 G---DLIKFSAETLSELIRTTLDAEKVFTQGL--------NILEWLENPSNTPDKDYLLS 233
Query: 701 AYKS------VELDNY------LNGSPVQHREVQGGESIRFRGYFKNGIRSNRATDPTDT 748
S ++L +Y L +P + R G + + G+ + A TD+
Sbjct: 234 IPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ-----GLVTAVAIAETDS 288
Query: 749 YYPFY 753
+ F+
Sbjct: 289 WESFF 293
Score = 35.0 bits (80), Expect = 0.14
Identities = 55/281 (19%), Positives = 90/281 (32%), Gaps = 81/281 (28%)
Query: 9 GFN--HVTKKSEPKLYRI--KGKRSPTITQ-MPAIDWKYFNSGDVF---ILDTDDEVI-- 58
GF+ + + P I G++ I + A+ ++ G + I +E
Sbjct: 1658 GFSILDIVINN-PVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 59 FIWIGRAANYMEKLQATKVAQQLKTENNALAL----IFVEDGKELNLPEAEKTL----LG 110
+ + L AT+ Q AL L F ED K L A+ T LG
Sbjct: 1717 YTFRSEK----GLLSATQFTQP------ALTLMEKAAF-EDLKSKGLIPADATFAGHSLG 1765
Query: 111 VYLDLRASVGVKGNIGESD--EVVEHTHYNHL--KLYQCS---DEDGTYKVTEVKTGPLY 163
Y L + V + EVV Q + DE G + P
Sbjct: 1766 EYAALASLADV---MSIESLVEVV------FYRGMTMQVAVPRDELGRSNYGMIAINP-- 1814
Query: 164 QSDLNSKCSDEDGTYKVTEV--KTGPL-----YQSDLNSKDS-FIIDQNGRAIWVWVGKG 215
+ + S E Y V V +TG L Y N ++ ++
Sbjct: 1815 -GRVAASFSQEALQYVVERVGKRTGWLVEIVNY----NVENQQYVA-------------- 1855
Query: 216 ASKKERIEAIRNAHGFVRKKKYDSGIPVTRVVE--HGEPVE 254
A ++ + N F++ +K I + + + E VE
Sbjct: 1856 AGDLRALDTVTNVLNFIKLQK----IDIIELQKSLSLEEVE 1892
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.057
Identities = 11/45 (24%), Positives = 19/45 (42%), Gaps = 17/45 (37%)
Query: 663 EQEFKKIFQMSYEMYGTMEQHIHFWLGKNTSTDEA-AVAAYKSVE 706
+Q KK+ Q S ++Y + D A A+A ++E
Sbjct: 19 KQALKKL-QASLKLY---------------ADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 2.6
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 4/30 (13%)
Query: 276 SIGKIAHLTPSKLDMASLHSCPQLAANTRL 305
++ K+ + L + + S P LA +
Sbjct: 21 ALKKLQ----ASLKLYADDSAPALAIKATM 46
Score = 29.1 bits (64), Expect = 3.1
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 21/50 (42%)
Query: 70 EKLQATKVAQQLKTENNALALIFVEDGKELNLPEAEKTLLGVYLDLRASV 119
EK Q LK +L L + +D + P A L ++A++
Sbjct: 18 EK-------QALKKLQASLKL-YADD----SAP-A--------LAIKATM 46
>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant
enzyme, reactive oxygen species, thioredoxin fold,
structural genomics; 2.30A {Aeropyrum pernix} SCOP:
c.47.1.10 PDB: 2cx3_A
Length = 164
Score = 29.5 bits (67), Expect = 2.3
Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 172 SDEDGT----YKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRN 227
SD + Y V L + FI+ +G + WV + + +
Sbjct: 96 SDYNREVIKLYNVYHEDLKGLKMVAKRA--VFIVKPDGTVAYKWVTDNPLNEPDYDEVVR 153
Query: 228 A 228
Sbjct: 154 E 154
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A
Length = 160
Score = 28.7 bits (65), Expect = 4.4
Identities = 5/31 (16%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 199 FIIDQNGRAIWVWV---GKGASKKERIEAIR 226
F++D++G + + G+ ++ +A+
Sbjct: 126 FVVDRSGIIRFAEMKQPGEVRDQRLWTDALA 156
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 28.3 bits (64), Expect = 5.3
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 172 SDEDGT----YKVTEVKTGPLYQSDLNSKDSFIIDQNGRAIWVWVGKGASKKERIEAIRN 227
SD + Y V L L + F+ID+ G+ + WV +K+ + I
Sbjct: 93 SDYNREVVKKYNVAWEFPA-LPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPYDEIEK 151
Query: 228 A 228
Sbjct: 152 V 152
>1qfg_A FHUA, protein (ferric hydroxamate uptake receptor); TONB-dependent
receptor, integral outer membrane protein,
ferrichrome-iron receptor; HET: PA1 GCN KDO GMH GLC GLA
FTT DAO MYR DDQ; 2.50A {Escherichia coli} SCOP: f.4.3.3
PDB: 1qff_A* 1qjq_A* 1qkc_A* 2grx_A* 1fi1_A* 2fcp_A*
1by5_A* 1by3_A* 1fcp_A*
Length = 725
Score = 29.6 bits (67), Expect = 5.7
Identities = 8/89 (8%), Positives = 21/89 (23%), Gaps = 4/89 (4%)
Query: 702 YKSVELDNYLNGS----PVQHREVQGGESIRFRGYFKNGIRSNRATDPTDTYYPFYPSNR 757
++ +D L + H + G + +R R + + + Y P +
Sbjct: 352 LQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMRNDINAWFGYDDSVPLLNLYNPSSHHHH 411
Query: 758 DLDTPIMVIKQGYEPTTFTGFFGPWDTDL 786
+ +
Sbjct: 412 HHGSSVNTDFDFNAKDPANSGPYRILNKQ 440
>2xjp_A Flocculin-5, flocculation protein FLO5; cell adhesion, greenbeard,
PA14-domain, carbohydrate binding interaction; HET: MAN
BMA; 0.95A {Saccharomyces cerevisiae} PDB: 2xjq_A
2xjr_A* 2xjs_A* 2xjt_A* 2xju_A* 2xjv_A*
Length = 258
Score = 28.7 bits (63), Expect = 6.9
Identities = 12/87 (13%), Positives = 22/87 (25%), Gaps = 1/87 (1%)
Query: 723 GGESIRFRGYFKNGIRSNRATDPTDTYYPFYPSNRDLDTPIMVIKQGYEPTTFTGFFGPW 782
S F ++ + + D TG+F P
Sbjct: 75 VSSSGTFPCPQEDSYGNWGCKGMGACSNSQGIAYWSTDLFGFYTTPTNVTLEMTGYFLPP 134
Query: 783 DTDLWKLFILDTDDEVIFIWIGRAANY 809
T + DD I + +G + +
Sbjct: 135 QTGSYTFSFATVDDSAI-LSVGGSIAF 160
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding,
aminoacyl-tRNA synthetase, ligase, nucleotide-binding;
HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Length = 393
Score = 28.7 bits (64), Expect = 7.7
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 19/120 (15%)
Query: 592 SNRDLDTPIMVIKQGYEPTTFTGFFGPWDTDL----------WKVYLNEQEFKKIFQMS- 640
S+RD + + V ++G +TG GP L K + + + Q++
Sbjct: 58 SHRDFEKILDVYEKGELFYLYTG-RGPSSESLHVGHLVPFLFTKYLQDTFKVPLVIQLTD 116
Query: 641 YESFTTLPKWRRDNIKKSVYLNEQEF-------KKIFQMSYEMYGTMEQHIHFWLGKNTS 693
E F + Y N ++ + F + Y + K S
Sbjct: 117 DEKFIFKSNLTLEETHNYAYENMKDIIACGFDPELTFIFTNLEYIAELYPDILRIEKKIS 176
>2w16_A FPVA, ferripyoverdine receptor; FPVA, iron, membrane, TONB BOX,
transport, siderop cell membrane; HET: N8E PVE FHO;
2.71A {Pseudomonas aeruginosa} PDB: 2o5p_A* 2iah_A*
2w6t_A* 2w6u_A* 2w75_A* 2w76_A* 2w77_A* 2w78_A* 1xkh_A*
Length = 772
Score = 29.2 bits (66), Expect = 7.8
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 16/129 (12%)
Query: 643 SFTTLPKW-RRDNIKKSVYLN-EQEFKKIFQ----MSYEMYGTMEQHIHFWLGKNTSTDE 696
SF KW + ++V+ N E F + + +++ G +
Sbjct: 338 SFNNGAKWSSWEQYTRTVFANLEHNFANGWVGKVQLDHKINGYHAPLGAIMGDWPAPDNS 397
Query: 697 AAVAAYKSVE------LDNYLNGS----PVQHREVQGGESIRFRGYFKNGIRSNRATDPT 746
A + A K LD YL G +H V G + K+ + T
Sbjct: 398 AKIVAQKYTGETKSNSLDIYLTGPFQFLGREHELVVGTSASFSHWEGKSYWNLRNYDNTT 457
Query: 747 DTYYPFYPS 755
D + +
Sbjct: 458 DDFINWDGD 466
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.410
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,702,765
Number of extensions: 779786
Number of successful extensions: 2040
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1886
Number of HSP's successfully gapped: 104
Length of query: 819
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 718
Effective length of database: 3,881,772
Effective search space: 2787112296
Effective search space used: 2787112296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.8 bits)