BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13831
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EQY|S Chain S, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Domain 1
pdb|1ESV|S Chain S, Complex Between Latrunculin A:rabbit Muscle Alpha
Actin:human Gelsolin Domain 1
Length = 125
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>pdb|1C0F|S Chain S, Crystal Structure Of Dictyostelium Caatp-Actin In Complex
With Gelsolin Segment 1
pdb|1C0G|S Chain S, Crystal Structure Of 1:1 Complex Between Gelsolin Segment
1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT
228: Q228kT229AA230YE360H)
pdb|1DEJ|S Chain S, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA
Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN
Complex With Human Gelsolin Segment 1
pdb|3A5L|S Chain S, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5M|S Chain S, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5N|S Chain S, Crystal Structure Of A Dictyostelium P109a Ca2+-Actin In
Complex With Human Gelsolin Segment 1
pdb|3A5O|S Chain S, Crystal Structure Of A Dictyostelium P109i Ca2+-Actin In
Complex With Human Gelsolin Segment 1
Length = 127
Score = 77.4 bits (189), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 57 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 116
Query: 74 SYHR 77
Y +
Sbjct: 117 KYKK 120
>pdb|1YAG|G Chain G, Structure Of The Yeast Actin-human Gelsolin Segment 1
Complex
pdb|1YVN|G Chain G, The Yeast Actin Val 159 Asn Mutant Complex With Human
Gelsolin Segment 1.
pdb|1MDU|A Chain A, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1MDU|D Chain D, Crystal Structure Of The Chicken Actin Trimer Complexed
With Human Gelsolin Segment 1 (Gs-1)
pdb|1NLV|G Chain G, Crystal Structure Of Dictyostelium Discoideum Actin
Complexed With Ca Atp And Human Gelsolin Segment 1
pdb|1NM1|G Chain G, Crystal Structure Of D. Dicsoideum Actin Complexed With
Gelsolin Segment 1 And Mg Atp At 1.8 A Resolution
pdb|1NMD|G Chain G, Crystal Structure Of D. Discoideum Actin-Gelsolin Segment
1 Complex Crystallized In Presence Of Lithium Atp
pdb|3CJB|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Gelsolin-Segment 1
pdb|3CJC|G Chain G, Actin Dimer Cross-Linked By V. Cholerae Martx Toxin And
Complexed With Dnase I And Gelsolin-Segment 1
Length = 125
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>pdb|1D4X|G Chain G, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 126
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>pdb|1RGI|G Chain G, Crystal Structure Of Gelsolin Domains G1-G3 Bound To Actin
Length = 346
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 54 GILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 113
Query: 74 SYHR 77
Y +
Sbjct: 114 KYKK 117
>pdb|1P8Z|G Chain G, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin
Residues Val26-Glu156
Length = 136
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>pdb|3FFK|A Chain A, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
pdb|3FFK|D Chain D, Crystal Structure Of Human Gelsolin Domains G1-G3 Bound To
Actin
Length = 377
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 57 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 116
Query: 74 SYHR 77
Y +
Sbjct: 117 KYKK 120
>pdb|3CI5|G Chain G, Complex Of Phosphorylated Dictyostelium Discoideum Actin
With Gelsolin
Length = 126
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 56 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 115
Query: 74 SYHR 77
Y +
Sbjct: 116 KYKK 119
>pdb|3TU5|B Chain B, Actin Complex With Gelsolin Segment 1 Fused To Cobl
Segment
Length = 297
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 73 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 132
Query: 74 SYHR 77
Y +
Sbjct: 133 KYKK 136
>pdb|3CIP|G Chain G, Complex Of Dictyostelium Discoideum Actin With Gelsolin
Length = 128
Score = 77.0 bits (188), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 58 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 117
Query: 74 SYHR 77
Y +
Sbjct: 118 KYKK 121
>pdb|1D0N|A Chain A, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin.
pdb|1D0N|B Chain B, The Crystal Structure Of Calcium-Free Equine Plasma
Gelsolin
Length = 729
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 53 GILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 112
Query: 74 SYHR 77
Y +
Sbjct: 113 KYKK 116
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 435 QIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 486
>pdb|2FGH|A Chain A, Atp Bound Gelsolin
pdb|2FGH|B Chain B, Atp Bound Gelsolin
Length = 731
Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 28/52 (53%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 437 QIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 488
>pdb|1T44|G Chain G, Structural Basis Of Actin Sequestration By Thymosin-B4:
Implications For Arp23 ACTIVATION
Length = 147
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>pdb|3FFN|A Chain A, Crystal Structure Of Calcium-Free Human Gelsolin
pdb|3FFN|B Chain B, Crystal Structure Of Calcium-Free Human Gelsolin
Length = 782
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 106 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 165
Query: 74 SYHR 77
Y +
Sbjct: 166 KYKK 169
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 480 YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 539
>pdb|2FF3|A Chain A, Crystal Structure Of Gelsolin Domain 1:n-Wasp V2 Motif
Hybrid In Complex With Actin
pdb|2FF6|G Chain G, Crystal Structure Of Gelsolin Domain 1:ciboulot Domain 2
Hybrid In Complex With Actin
Length = 150
Score = 76.6 bits (187), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 77 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 136
Query: 74 SYHR 77
Y +
Sbjct: 137 KYKK 140
>pdb|1JHW|A Chain A, Ca2+-Binding Mimicry In The Crystal Structure Of The
Eu3+-Bound Mutant Human Macrophage Capping Protein Cap G
Length = 347
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYH 76
H+H W+G+ +S DE A +V+LD+YL G PVQHREVQG ES F YF G+ Y
Sbjct: 60 HLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQ 117
>pdb|1J72|A Chain A, Crystal Structure Of Mutant Macrophage Capping Protein
(Cap G) With Actin-Severing Activity In The Ca2+-Free
Form
Length = 347
Score = 72.0 bits (175), Expect = 8e-14, Method: Composition-based stats.
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYH 76
H+H W+G+ +S DE A +V+LD+YL G PVQHREVQG ES F YF G+ Y
Sbjct: 60 HLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYFPRGLKYQ 117
>pdb|2VIK|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, Minimized Average Structure
pdb|2VIL|A Chain A, Refined Structure Of The Actin-Severing Domain Villin 14t,
Determined By Solution Nmr, 11 Structures
Length = 126
Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 40/59 (67%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHR 77
+IH+WLGKN+S DE AA + ++D YL VQHREVQG ES FR YFK G+ Y +
Sbjct: 60 NIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYFKQGLIYKQ 118
>pdb|1P8X|A Chain A, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|B Chain B, The Calcium-activated C-terminal Half Of Gelsolin
pdb|1P8X|C Chain C, The Calcium-activated C-terminal Half Of Gelsolin
pdb|2FH1|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH1|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph
4.5
pdb|2FH2|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH2|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 4.5
pdb|2FH3|A Chain A, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|B Chain B, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH3|C Chain C, C-Terminal Half Of Gelsolin Soaked In Low Calcium At Ph 8
pdb|2FH4|A Chain A, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|B Chain B, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
pdb|2FH4|C Chain C, C-Terminal Half Of Gelsolin Soaked In Egta At Ph 8
Length = 344
Score = 45.1 bits (105), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 42 YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 101
>pdb|1H1V|G Chain G, Gelsolin G4-G6ACTIN COMPLEX
Length = 331
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 42 YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 101
>pdb|1NPH|A Chain A, Gelsolin Domains 4-6 In Active, Actin Free Conformation
Identifies Sites Of Regulatory Calcium Ions
Length = 329
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 40 YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 99
>pdb|3FG6|A Chain A, Structure Of The C-terminus Of Adseverin
pdb|3FG6|C Chain C, Structure Of The C-terminus Of Adseverin
pdb|3FG6|G Chain G, Structure Of The C-terminus Of Adseverin
pdb|3FG6|E Chain E, Structure Of The C-terminus Of Adseverin
pdb|3FG6|F Chain F, Structure Of The C-terminus Of Adseverin
pdb|3FG6|H Chain H, Structure Of The C-terminus Of Adseverin
pdb|3FG6|D Chain D, Structure Of The C-terminus Of Adseverin
pdb|3FG6|B Chain B, Structure Of The C-terminus Of Adseverin
Length = 371
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 29/54 (53%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71
Q I+ W G N + DE +A+ +V+LD L G VQ R QG E + FK+
Sbjct: 91 QIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKD 144
>pdb|3FG7|A Chain A, The Crystal Structure Of Villin Domain 6
pdb|3FG7|B Chain B, The Crystal Structure Of Villin Domain 6
Length = 398
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 20 IHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFK 70
++ W G S DE +AY++V LD NG PVQ R G E FK
Sbjct: 107 LYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIFK 157
>pdb|4DK0|A Chain A, Crystal Structure Of Maca From Actinobacillus
Actinomycetemcomitans
Length = 369
Score = 27.3 bits (59), Expect = 2.3, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 45 NYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVL 80
N LNG+ Q RE++ G F+ K+G++ KV+
Sbjct: 315 NVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVV 350
>pdb|4DK1|A Chain A, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|B Chain B, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|C Chain C, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain.
pdb|4DK1|D Chain D, Crystal Structure Of Maca-Mexa Chimeric Protein,
Containing The Pseudomonas Aeruginosa Mexa Alpha-Hairpin
Domain
Length = 341
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 45 NYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVL 80
N LNG+ Q RE++ G F+ K+G++ KV+
Sbjct: 287 NVLNGNTTQEREIEIGVQNDFQTEVKSGLTEGEKVV 322
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 25.8 bits (55), Expect = 6.0, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 24 LGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVLTH 82
LG+ T+TDE V A K +++ P + G ++ G K +S R L +
Sbjct: 437 LGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNN 495
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
In Complex With Nadp(+)
pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Isocitrate
pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With Nadph, A- Ketoglutarate
And Ca(2+)
pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
Mitochondrial Nadp(+)- Dependent Isocitrate
Dehydrogenase In Complex With A-ketoglutarate
Length = 427
Score = 25.4 bits (54), Expect = 7.7, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 2 PDAFTFQPYKVYGTMEQHIH-FWLGKNTSTDE-AAVAAY-----KSVELDN 45
PD TF+ +GT+ +H + G+ TST+ A++ A+ K ELDN
Sbjct: 314 PDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDN 364
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,809,918
Number of Sequences: 62578
Number of extensions: 98943
Number of successful extensions: 265
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 230
Number of HSP's gapped (non-prelim): 37
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)