Query psy13831
Match_columns 82
No_of_seqs 105 out of 515
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13831.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13831hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0443|consensus 99.9 1E-24 2.2E-29 175.7 9.6 80 3-82 426-507 (827)
2 KOG0443|consensus 99.9 8.6E-25 1.9E-29 176.1 3.1 79 2-80 45-125 (827)
3 KOG0445|consensus 99.6 1.3E-16 2.7E-21 128.3 1.1 63 15-80 578-640 (919)
4 KOG0444|consensus 99.5 5.9E-15 1.3E-19 119.7 4.8 80 2-81 527-608 (1255)
5 smart00262 GEL Gelsolin homolo 99.5 6.8E-14 1.5E-18 85.9 7.9 62 3-71 27-89 (90)
6 PF00626 Gelsolin: Gelsolin re 99.4 2.2E-13 4.8E-18 80.6 4.9 57 3-66 19-76 (76)
7 KOG0444|consensus 97.9 2E-06 4.3E-11 71.0 -0.1 66 16-81 965-1031(1255)
8 PF00241 Cofilin_ADF: Cofilin/ 95.1 0.24 5.3E-06 31.4 7.5 58 4-64 55-116 (127)
9 smart00102 ADF Actin depolymer 94.8 0.23 4.9E-06 31.9 7.0 57 4-63 55-115 (127)
10 cd00013 ADF Actin depolymerisa 92.4 0.8 1.7E-05 29.2 6.2 47 4-50 61-111 (132)
11 PLN03216 actin depolymerizing 89.4 3.1 6.8E-05 27.6 7.1 58 4-64 68-130 (141)
12 KOG0445|consensus 87.2 1 2.2E-05 37.9 4.2 55 17-71 379-452 (919)
13 KOG3655|consensus 83.5 1.9 4.2E-05 34.5 4.1 53 15-67 77-131 (484)
14 cd02983 P5_C P5 family, C-term 58.2 45 0.00098 21.5 5.4 44 27-70 33-76 (130)
15 PF07965 Integrin_B_tail: Inte 51.0 25 0.00055 21.4 3.2 20 3-22 56-76 (87)
16 PTZ00152 cofilin/actin-depolym 49.1 64 0.0014 21.0 5.0 42 4-49 62-104 (122)
17 KOG1747|consensus 48.7 81 0.0017 24.4 6.1 45 4-49 67-111 (342)
18 COG3041 Uncharacterized protei 40.3 44 0.00096 21.1 3.1 26 1-28 63-88 (91)
19 PF08968 DUF1885: Domain of un 35.9 98 0.0021 20.8 4.3 47 17-78 83-129 (130)
20 PF14112 DUF4284: Domain of un 35.8 30 0.00065 22.4 1.9 13 20-32 2-14 (122)
21 PF01361 Tautomerase: Tautomer 32.1 90 0.002 16.9 4.1 31 19-51 4-35 (60)
22 KOG3446|consensus 28.7 1.5E+02 0.0034 18.8 4.1 56 16-71 16-71 (97)
23 KOG2373|consensus 25.9 90 0.002 25.0 3.3 44 18-67 167-210 (514)
24 COG5350 Predicted protein tyro 23.9 9.6 0.00021 26.7 -2.1 63 17-80 95-158 (172)
25 TIGR02264 gmx_para_CXXCG Myxoc 22.8 1.2E+02 0.0025 22.4 3.1 46 21-68 107-153 (237)
26 KOG1736|consensus 22.8 2.5E+02 0.0055 19.0 5.0 34 4-37 69-107 (143)
27 KOG2586|consensus 20.9 1.2E+02 0.0025 22.2 2.8 24 2-25 82-114 (228)
28 KOG3326|consensus 20.9 41 0.00089 23.2 0.5 34 16-49 107-140 (154)
29 PF06205 GT36_AF: Glycosyltran 20.0 94 0.002 18.9 2.0 29 4-32 61-90 (90)
No 1
>KOG0443|consensus
Probab=99.91 E-value=1e-24 Score=175.68 Aligned_cols=80 Identities=28% Similarity=0.370 Sum_probs=75.2
Q ss_pred Ccee-eeeeeeCC-ceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEeccc
Q psy13831 3 DAFT-FQPYKVYG-TMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVL 80 (82)
Q Consensus 3 ~~~~-~yty~~~~-~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~~ 80 (82)
|||+ +|||+..+ +.+++||.|+|++|++||+++|+.+|++|++.++|.|+|+|++||||||||++||+|+|||++|+.
T Consensus 426 dcYlvlYtY~~~~~~~~~iiY~W~G~qAs~ee~~~a~~~A~~l~~s~kg~~vq~rv~~GkEP~hF~~iFqgkliifkgg~ 505 (827)
T KOG0443|consen 426 DCYLVLYTYPRGEERTEHIIYVWQGKQASQEERAAAISLAKALVESLKGVPVQVRIYEGKEPPHFLAIFQGKLIIFKGGT 505 (827)
T ss_pred CeEEEEEeeccCCcccceEEEEEecccCCHHHHHHHHHHHHHHhhhcCCceeEEEeecCCCChHHHHhhCCceEEEecCc
Confidence 8886 58888555 899999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q psy13831 81 TH 82 (82)
Q Consensus 81 ~~ 82 (82)
||
T Consensus 506 s~ 507 (827)
T KOG0443|consen 506 SE 507 (827)
T ss_pred CC
Confidence 75
No 2
>KOG0443|consensus
Probab=99.90 E-value=8.6e-25 Score=176.06 Aligned_cols=79 Identities=51% Similarity=0.809 Sum_probs=73.1
Q ss_pred CCceeeeee-e-eCCceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEecc
Q psy13831 2 PDAFTFQPY-K-VYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKV 79 (82)
Q Consensus 2 ~~~~~~yty-~-~~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~ 79 (82)
-||||++.. . +.+...++||||+|+++|+||+++||+++++||+.|||.|||+||+||+|++.||+|||.+|++.+||
T Consensus 45 GdaYIvL~t~~~k~~~l~~DIHyWLGkd~S~dE~g~aAiktveLD~~Lgg~~vQhREVQg~ES~~FLsYFK~gi~~~~GG 124 (827)
T KOG0443|consen 45 GDAYIVLKTTLKKNGSLSYDIHYWLGKDSSQDEAGAAAIKTVELDDYLGGRAVQHREVQGHESEKFLSYFKPGIIYQEGG 124 (827)
T ss_pred CceEEEEehhhccCCccceeEEEEecCccchhhhcceeeeeEehhhhhCCCcceeehhcccchHHHHhhccCCceecccc
Confidence 489998763 3 35577899999999999999999999999999999999999999999999999999999999999997
Q ss_pred c
Q psy13831 80 L 80 (82)
Q Consensus 80 ~ 80 (82)
.
T Consensus 125 v 125 (827)
T KOG0443|consen 125 V 125 (827)
T ss_pred c
Confidence 5
No 3
>KOG0445|consensus
Probab=99.61 E-value=1.3e-16 Score=128.28 Aligned_cols=63 Identities=29% Similarity=0.421 Sum_probs=57.5
Q ss_pred ceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEeccc
Q psy13831 15 TMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVL 80 (82)
Q Consensus 15 ~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~~ 80 (82)
+.....|||+|++++..|+|+||++++|||++-+. |+|+.||+||++|+++|+|+|+++.|..
T Consensus 578 r~rcvyf~WqG~hst~~ekG~~AL~tvElD~e~ga---qvrv~qG~Ep~~Fl~lF~g~m~vhsgr~ 640 (919)
T KOG0445|consen 578 RERCVYFFWQGRHSTVSEKGTSALMTVELDEERGA---QVRVLQGKEPPCFLQLFQGGMVVHSGRR 640 (919)
T ss_pred cceEEEEEEccccCCcccccceeeeeeeeccccCc---eeEeecCCCccHHHHHhcCCeeEEcCch
Confidence 34566688999999999999999999999998765 9999999999999999999999999974
No 4
>KOG0444|consensus
Probab=99.54 E-value=5.9e-15 Score=119.68 Aligned_cols=80 Identities=28% Similarity=0.408 Sum_probs=74.4
Q ss_pred CCceeeeeeee--CCceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEecc
Q psy13831 2 PDAFTFQPYKV--YGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKV 79 (82)
Q Consensus 2 ~~~~~~yty~~--~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~ 79 (82)
.||||.-.... .|...+.||||+|.+|+-|.++.||++||.|.++||..+.-+|+.||.|+.+||++|...|+|.+||
T Consensus 527 aDcYiVLKT~~ddsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~LgA~CRTvREEmgDEsEeFL~lF~~ei~YIEGG 606 (1255)
T KOG0444|consen 527 ADCYIVLKTTRDDSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLGATCRTVREEMGDESEEFLTLFGEEIVYIEGG 606 (1255)
T ss_pred ccEEEEEEeecccccccceeEEEEecccccccchhhhHHHhhhhhhhhCchhhhhHHhhCccHHHHHHHhcceeEEEecC
Confidence 59999876644 5678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q psy13831 80 LT 81 (82)
Q Consensus 80 ~~ 81 (82)
+|
T Consensus 607 rT 608 (1255)
T KOG0444|consen 607 RT 608 (1255)
T ss_pred ce
Confidence 87
No 5
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=99.53 E-value=6.8e-14 Score=85.85 Aligned_cols=62 Identities=39% Similarity=0.574 Sum_probs=54.0
Q ss_pred CceeeeeeeeCCceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEee-cCCCChhHHhcccC
Q psy13831 3 DAFTFQPYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREV-QGGESIRFRGYFKN 71 (82)
Q Consensus 3 ~~~~~yty~~~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~-QGkEp~~Fl~lFkg 71 (82)
|||||-+- ..||.|+|++|+.+|+.+|+..|..+.+..+.+..+++++ ||+||++|.++|++
T Consensus 27 d~fild~~-------~~iyvW~G~~as~~ek~~A~~~a~~~~~~~~~~~~~i~~v~eg~E~~~F~~~f~~ 89 (90)
T smart00262 27 DCYILDTG-------SEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGG 89 (90)
T ss_pred CEEEEECC-------CEEEEEECCCCCHHHHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCHHHHHHhCC
Confidence 78888652 4799999999999999999999999988777666777765 99999999999986
No 6
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=99.43 E-value=2.2e-13 Score=80.61 Aligned_cols=57 Identities=30% Similarity=0.356 Sum_probs=52.7
Q ss_pred CceeeeeeeeCCceeEEEEEEeCCCCCHHHHHHHHHHHHHHH-HHcCCCCeEEEeecCCCChhHH
Q psy13831 3 DAFTFQPYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELD-NYLNGSPVQHREVQGGESIRFR 66 (82)
Q Consensus 3 ~~~~~yty~~~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld-~~l~~~~vq~Rv~QGkEp~~Fl 66 (82)
||||+-+-. .||.|+|++++..++..|+..|.++. +...+.+.++++.||+||++|+
T Consensus 19 ~~yIld~~~-------~i~vW~G~~~~~~e~~~a~~~a~~~~~~~~~~~~~~~~~~eg~E~~~F~ 76 (76)
T PF00626_consen 19 DCYILDCGY-------EIFVWVGKKSSPEEKAFAAQLAQELLSEERPPLPEVIRVEEGKEPAEFL 76 (76)
T ss_dssp SEEEEEESS-------EEEEEEHTTSHHHHHHHHHHHHHHHHHHHTTTTSEEEEEETTHHHHHHH
T ss_pred CEEEEEeCC-------CcEEEEeccCCHHHHHHHHHHHHHhhhhcCCCCCEEEEecCCCCChHHC
Confidence 788887655 79999999999999999999999999 8889999999999999999996
No 7
>KOG0444|consensus
Probab=97.92 E-value=2e-06 Score=70.98 Aligned_cols=66 Identities=18% Similarity=0.234 Sum_probs=50.9
Q ss_pred eeEEEEEEeCCCCCHHHH-HHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEecccC
Q psy13831 16 MEQHIHFWLGKNTSTDEA-AVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVLT 81 (82)
Q Consensus 16 ~~~~iy~W~G~~ss~de~-~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~~~ 81 (82)
.++++|||+|++|+.--= +-...+-..+.+.++++.--||.+|-.|-+-||+-||-++||++|++-
T Consensus 965 fqCvVYFWQGR~AsNMGWLtFTF~LQkkFe~~F~~kLEVVRm~QQQEN~KFlSHFKRKFiIhrGkRk 1031 (1255)
T KOG0444|consen 965 FQCVVYFWQGRDASNMGWLTFTFQLQKKFEEIFKDKLEVVRMYQQQENHKFLSHFKRKFIIHRGKRK 1031 (1255)
T ss_pred eeEEEEEecCCccCccceEEEEEEehhhHHHhcccceeeeeHhhhhhhhHHHHHhhhhheeeccccc
Confidence 457899999999886432 111123334556678888889999999999999999999999999873
No 8
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=95.05 E-value=0.24 Score=31.44 Aligned_cols=58 Identities=17% Similarity=0.336 Sum_probs=40.8
Q ss_pred ceeeeeeee--CC-c-eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChh
Q psy13831 4 AFTFQPYKV--YG-T-MEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 64 (82)
Q Consensus 4 ~~~~yty~~--~~-~-~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~ 64 (82)
||++|.|.. .+ . .+..+.+|.+..++..++..-|.....|.+.+++ ++ ..+|..++.+
T Consensus 55 ~y~~~~~~~~~~~~~~~k~vfI~w~P~~~~vk~km~yas~k~~l~~~l~~--~~-~~~~~~d~~d 116 (127)
T PF00241_consen 55 RYILYRFEYTHKGSRRSKLVFIYWCPDNAPVKEKMLYASSKASLKKKLGG--IH-IEIQASDPDD 116 (127)
T ss_dssp EEEEEEEEEEETTSEEEEEEEEEEESTTS-HHHHHHHHHHHHHHHHHCTT--EE-EEEEESSGGG
T ss_pred EEEEEEeeecccCCCCceEEEEEEecCCccHHHhhhhHHhHHHHHHHhCC--ce-EEEEECChHH
Confidence 799998863 23 2 3444568999999999999888888888888988 22 2445555544
No 9
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=94.83 E-value=0.23 Score=31.89 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=41.8
Q ss_pred ceeeeeeeeC---C-ceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCCh
Q psy13831 4 AFTFQPYKVY---G-TMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESI 63 (82)
Q Consensus 4 ~~~~yty~~~---~-~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~ 63 (82)
+|++|.|... + ..+..+.+|.+..++..++..-|.....+.+.++|- ++ .+|..++.
T Consensus 55 ry~~~~~~~~~~~~~~~k~vfI~w~P~~a~~~~km~yas~k~~l~~~l~~~--~~-~i~~~~~~ 115 (127)
T smart00102 55 RYALYDYKFTTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKELGGI--QV-EVQATDED 115 (127)
T ss_pred eEEEEEeecccCCCccccEEEEEECCCCCCHHHHHHHHHHHHHHHHHcCCc--eE-EEEECChh
Confidence 6999999653 2 334556789999999999999998888888888873 32 23444443
No 10
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=92.36 E-value=0.8 Score=29.17 Aligned_cols=47 Identities=13% Similarity=0.228 Sum_probs=36.7
Q ss_pred ceeeeeeeeCC----ceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCC
Q psy13831 4 AFTFQPYKVYG----TMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGS 50 (82)
Q Consensus 4 ~~~~yty~~~~----~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~ 50 (82)
||++|.|.... ..+..+.+|.+..++..++..-|..-..+-+.+++-
T Consensus 61 ~y~~~~~~~~~~~~~~~k~vfI~w~P~~a~~k~km~yas~k~~l~~~l~~~ 111 (132)
T cd00013 61 RYALYDYDFTTEGSKKSKIVFIYWSPETAPVKSKMLYASSKAALKRELVGI 111 (132)
T ss_pred eEEEEEecccCCCccccCEEEEEECCCCCChhhhhhhHHHHHHHHHhcCCc
Confidence 69999996642 345666789999999999988887777777777764
No 11
>PLN03216 actin depolymerizing factor; Provisional
Probab=89.42 E-value=3.1 Score=27.59 Aligned_cols=58 Identities=12% Similarity=0.166 Sum_probs=41.6
Q ss_pred ceeeeeeee---CCc--eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChh
Q psy13831 4 AFTFQPYKV---YGT--MEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIR 64 (82)
Q Consensus 4 ~~~~yty~~---~~~--~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~ 64 (82)
+|++|.|.. ++. ....+.+|....|+..++-.-|.--..|-+.|+|-. -++|..++.+
T Consensus 68 rY~vyd~~~~~~~g~~~~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~---~~iqatd~~e 130 (141)
T PLN03216 68 RYAVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVH---YELQATDPTE 130 (141)
T ss_pred eEEEEEeEeccCCCCcccCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCe---EEEEECChHh
Confidence 499999853 222 234456899999999999888888888888888843 2456665544
No 12
>KOG0445|consensus
Probab=87.22 E-value=1 Score=37.92 Aligned_cols=55 Identities=22% Similarity=0.353 Sum_probs=43.0
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHHHH----------------cCCC---CeEEEeecCCCChhHHhcccC
Q psy13831 17 EQHIHFWLGKNTSTDEAAVAAYKSVELDNY----------------LNGS---PVQHREVQGGESIRFRGYFKN 71 (82)
Q Consensus 17 ~~~iy~W~G~~ss~de~~aaa~~a~~ld~~----------------l~~~---~vq~Rv~QGkEp~~Fl~lFkg 71 (82)
..-||.|.|++++.+.+..|-.+|.+|-+. ..|. ++.-+++||.|.-.|-.-|..
T Consensus 379 GSEvYVW~Gk~~~~~~~~~A~~lAk~l~~~dy~nc~~npld~~~~~~~gRPeW~i~gkitq~~et~LFKeKFsD 452 (919)
T KOG0445|consen 379 GSEVYVWHGKEVTLAQRKIAFQLAKHLWNFDYENCDINPLDLIPRKGQGRPEWAIFGKITQHNETILFKEKFSD 452 (919)
T ss_pred CceEEEEcCccCchHHHHHHHHHHHHHhCCCcccCccccccccccccCCCcceeeechhhcchhhhhHHHhhcc
Confidence 356899999999999999999999998541 0122 267788999999988887753
No 13
>KOG3655|consensus
Probab=83.51 E-value=1.9 Score=34.46 Aligned_cols=53 Identities=19% Similarity=0.244 Sum_probs=41.1
Q ss_pred ceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeE--EEeecCCCChhHHh
Q psy13831 15 TMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQ--HREVQGGESIRFRG 67 (82)
Q Consensus 15 ~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq--~Rv~QGkEp~~Fl~ 67 (82)
..+++|--|+|..++.--+++|+.++..+.+.|+|-.|+ .|+...=++..|+.
T Consensus 77 l~KfvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~ 131 (484)
T KOG3655|consen 77 LPKFVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIRE 131 (484)
T ss_pred CcceEEEEecCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHH
Confidence 456778889999999999999999999999999997765 34444445555544
No 14
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=58.18 E-value=45 Score=21.55 Aligned_cols=44 Identities=5% Similarity=-0.012 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhccc
Q psy13831 27 NTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFK 70 (82)
Q Consensus 27 ~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFk 70 (82)
+++.++.........++.+.++++++..-.+.+.+-+.|+..|+
T Consensus 33 d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fg 76 (130)
T cd02983 33 DCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALN 76 (130)
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcC
Confidence 45666665555566677888999988888889999999999997
No 15
>PF07965 Integrin_B_tail: Integrin beta tail domain; InterPro: IPR012896 Integrins are the major metazoan receptors for cell adhesion to extracellular matrix proteins and, in vertebrates, also play important roles in certain cell-cell adhesions, make transmembrane connections to the cytoskeleton and activate many intracellular signalling pathways [, ]. The integrin receptors are composed of alpha and beta subunit heterodimers. Each subunit crosses the membrane once, with most of the polypeptide residing in the extracellular space, and has two short cytoplasmic domains. Some members of this family have EGF repeats at the C terminus and also have a vWA domain inserted within the integrin domain at the N terminus. Most integrins recognise relatively short peptide motifs, and in general require an acidic amino acid to be present. Ligand specificity depends upon both the alpha and beta subunits []. There are at least 18 types of alpha and 8 types of beta subunits recognised in humans []. Each alpha subunit tends to associate only with one type of beta subunit, but there are exceptions to this rule []. Each association of alpha and beta subunits has its own binding specificity and signalling properties. Many integrins require activation on the cell surface before they can bind ligands. Integrins frequently intercommunicate, and binding at one integrin receptor activate or inhibit another. The structure of unliganded alphaV beta3 showed the molecule to be folded, with the head bent over towards the C termini of the legs which would normally be inserted into the membrane []. The head comprises a beta propeller domain at the end terminus of the alphaV subunit and an I/A domain inserted into a loop on the top of the hybrid domain in the beta subunit. The I/A domain consists of a Rossman fold with a core of beta parallel sheets surrounded by amphipathic alpha helices. This entry represents the tail domain of the integrin beta subunit. It forms a four-stranded beta-sheet that contains parallel and anttparallel strands and faces an alpha helix found at the N terminus of this domain []. Interactions between the alpha-helix and the beta-sheet are mostly hydrophobic and involve a disulphide bond. The rear of the beta sheet is covered with a long A-B loop.; GO: 0004872 receptor activity, 0005488 binding, 0007155 cell adhesion, 0007160 cell-matrix adhesion, 0007229 integrin-mediated signaling pathway, 0008305 integrin complex; PDB: 3K71_H 3K6S_H 3K72_D 3IJE_B 1M1X_B 1U8C_B 2RN0_A 3FCS_B 1JV2_B 1L5G_B ....
Probab=51.02 E-value=25 Score=21.41 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=16.6
Q ss_pred Cceeeeeee-eCCceeEEEEE
Q psy13831 3 DAFTFQPYK-VYGTMEQHIHF 22 (82)
Q Consensus 3 ~~~~~yty~-~~~~~~~~iy~ 22 (82)
||.+.|+|. ..+...+.||.
T Consensus 56 dC~~~F~y~~~~~~~~~~v~V 76 (87)
T PF07965_consen 56 DCWFTFTYEQYDGNGKYVVYV 76 (87)
T ss_dssp SEEEEEEEE-ECTTTEEEEEE
T ss_pred CcEEEEEEEEeCCCCeEEEEE
Confidence 899999998 67777788875
No 16
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=49.08 E-value=64 Score=20.97 Aligned_cols=42 Identities=10% Similarity=0.166 Sum_probs=30.6
Q ss_pred c-eeeeeeeeCCceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy13831 4 A-FTFQPYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNG 49 (82)
Q Consensus 4 ~-~~~yty~~~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~ 49 (82)
| |++|.|. ++ ..+-+|.=..|+..++-.=|.--..|-+.++|
T Consensus 62 crY~vyd~~--~k--lvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~G 104 (122)
T PTZ00152 62 CAYVVFDAV--NK--IHFFMYARESSNSRDRMTYASSKQALLKKIEG 104 (122)
T ss_pred ceEEEEccC--CC--EEEEEECCCCCChHHhhhhHhHHHHHHHHhcc
Confidence 6 9999873 22 45568999999999987666665666666665
No 17
>KOG1747|consensus
Probab=48.66 E-value=81 Score=24.37 Aligned_cols=45 Identities=13% Similarity=0.229 Sum_probs=32.7
Q ss_pred ceeeeeeeeCCceeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy13831 4 AFTFQPYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNG 49 (82)
Q Consensus 4 ~~~~yty~~~~~~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~ 49 (82)
|||||.-...+. ++.+--|.-.+|+...+-.=|.--..|-.++|+
T Consensus 67 cyILyrlds~~~-~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~ 111 (342)
T KOG1747|consen 67 CYILYRLDSKNA-EWLLISWVPDNAPVRQKMLYASTRATLKREFGG 111 (342)
T ss_pred eEEEEeecCCCc-cEEEEEECCCCChHHHHHHHHHHHHHHHHHhcc
Confidence 999987665554 788888999999999886555444445555654
No 18
>COG3041 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.34 E-value=44 Score=21.14 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=18.6
Q ss_pred CCCceeeeeeeeCCceeEEEEEEeCCCC
Q psy13831 1 MPDAFTFQPYKVYGTMEQHIHFWLGKNT 28 (82)
Q Consensus 1 ~~~~~~~yty~~~~~~~~~iy~W~G~~s 28 (82)
-|||-++|++... ....++.=+|++|
T Consensus 63 ~pD~lLIY~v~~~--~~~L~l~RlGsHs 88 (91)
T COG3041 63 KPDLLLIYTVKEQ--EDVLRLVRLGSHS 88 (91)
T ss_pred CCCEEEEEEEecc--CCEEEEEEecchh
Confidence 3899999999876 3334556677765
No 19
>PF08968 DUF1885: Domain of unknown function (DUF1885); InterPro: IPR015062 This family consists of hypothetical proteins produced by bacteria of the Bacillus genus. ; PDB: 1T6A_A.
Probab=35.95 E-value=98 Score=20.79 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=28.9
Q ss_pred eEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEec
Q psy13831 17 EQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRK 78 (82)
Q Consensus 17 ~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G 78 (82)
+..|=.=+=..|+--|++-|.-+..=|...++++ |.+|.|+++++..
T Consensus 83 ~~~IQv~LP~~AThGDK~KANEfckfLAk~l~~E---------------L~LFNGR~mYf~~ 129 (130)
T PF08968_consen 83 QSYIQVVLPDGATHGDKGKANEFCKFLAKKLKGE---------------LHLFNGRTMYFNP 129 (130)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHHHHHH-EE---------------EE-TTS-EEEE--
T ss_pred ceEEEEECCCCCccCcchhHHHHHHHHHHHhhhe---------------eEEecCeeEeecC
Confidence 3445455667889999999998888888888763 2489999888764
No 20
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=35.76 E-value=30 Score=22.38 Aligned_cols=13 Identities=38% Similarity=0.915 Sum_probs=10.8
Q ss_pred EEEEeCCCCCHHH
Q psy13831 20 IHFWLGKNTSTDE 32 (82)
Q Consensus 20 iy~W~G~~ss~de 32 (82)
|+.|+|.-+|.++
T Consensus 2 VsiWiG~f~s~~e 14 (122)
T PF14112_consen 2 VSIWIGNFKSEDE 14 (122)
T ss_pred eEEEEecCCCHHH
Confidence 6899998877776
No 21
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=32.14 E-value=90 Score=16.91 Aligned_cols=31 Identities=16% Similarity=0.195 Sum_probs=18.1
Q ss_pred EEEEEeCCCCCHHHH-HHHHHHHHHHHHHcCCCC
Q psy13831 19 HIHFWLGKNTSTDEA-AVAAYKSVELDNYLNGSP 51 (82)
Q Consensus 19 ~iy~W~G~~ss~de~-~aaa~~a~~ld~~l~~~~ 51 (82)
.|..|.|. +.+.+ ..+...+.-+.+.+|-++
T Consensus 4 ~i~~~~g~--~~e~K~~l~~~it~~~~~~lg~~~ 35 (60)
T PF01361_consen 4 TIKIPEGR--TAEQKRELAEAITDAVVEVLGIPP 35 (60)
T ss_dssp EEEEESTS---HHHHHHHHHHHHHHHHHHHTS-G
T ss_pred EEEECCCC--CHHHHHHHHHHHHHHHHHHhCcCC
Confidence 46788887 44444 444455555567787654
No 22
>KOG3446|consensus
Probab=28.68 E-value=1.5e+02 Score=18.76 Aligned_cols=56 Identities=20% Similarity=0.157 Sum_probs=44.4
Q ss_pred eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccC
Q psy13831 16 MEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71 (82)
Q Consensus 16 ~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg 71 (82)
.+-.||..+-+.+|+--+.-....=++|-..-..-|+.+||--|--|..|-.|=.|
T Consensus 16 kElRI~lcqkspaSagvR~fvEk~Y~~lKkaNP~lPILIREcSgVqPrl~ARY~~G 71 (97)
T KOG3446|consen 16 KELRIHLCQKSPASAGVREFVEKFYVNLKKANPDLPILIRECSGVQPRLWARYGNG 71 (97)
T ss_pred hhheeeecCCCCcchhHHHHHHHhhhhhhhcCCCCcEeehhhcCCchHHHHHhcCC
Confidence 34558889999999888887777777776655567899999999999988877544
No 23
>KOG2373|consensus
Probab=25.92 E-value=90 Score=25.03 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=25.8
Q ss_pred EEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHh
Q psy13831 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRG 67 (82)
Q Consensus 18 ~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~ 67 (82)
..||||.+.+.+.= .+|-..|..|+. -.|..+|- ...+|+..++
T Consensus 167 ~~i~fWl~~d~~sw--~aAk~fa~kLn~---~rClLvrp-~e~~p~p~~a 210 (514)
T KOG2373|consen 167 DKIYFWLPVDHVSW--SAAKDFASKLNT---LRCLLVRP-EERPPEPVRA 210 (514)
T ss_pred heEEEEecccccch--HHHHHHHhhcCc---ceEEEECC-CCCCcchhhh
Confidence 45899999887732 344456666654 35667774 3334443333
No 24
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=23.86 E-value=9.6 Score=26.66 Aligned_cols=63 Identities=11% Similarity=0.044 Sum_probs=36.2
Q ss_pred eEEEEEEeCCC-CCHHHHHHHHHHHHHHHHHcCCCCeEEEeecCCCChhHHhcccCCEEEEeccc
Q psy13831 17 EQHIHFWLGKN-TSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYHRKVL 80 (82)
Q Consensus 17 ~~~iy~W~G~~-ss~de~~aaa~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~lFkg~~ii~~G~~ 80 (82)
.-.||.|-|-. |+....++|..++-.+|++--.+..+.=...-+--++.++++.. +..+||++
T Consensus 95 pllIHC~aGISRStA~A~i~a~ala~~~de~ela~~Lra~sp~atPN~RliaI~d~-~l~r~Grl 158 (172)
T COG5350 95 PLLIHCYAGISRSTAAALIAALALAPDMDETELAERLRALSPYATPNPRLIAIADA-ALGRKGRL 158 (172)
T ss_pred ceeeeeccccccchHHHHHHHHhhccccChHHHHHHHHhcCcccCCChhHHHHHHH-HHhhcchH
Confidence 45579999974 44555666666666665431122222222334455678888875 66666653
No 25
>TIGR02264 gmx_para_CXXCG Myxococcus xanthus double-CXXCG motif paralogous family. This family consists of at least 10 paralogous proteins from Myxococcus xanthus that lack detectable sequence similarity to any other protein family. An imperfectly conserved CXXCG motif, a probable binding site, appears twice in the multiple sequence alignment.
Probab=22.81 E-value=1.2e+02 Score=22.39 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=30.4
Q ss_pred EEEeCCCCCHHHHHHHH-HHHHHHHHHcCCCCeEEEeecCCCChhHHhc
Q psy13831 21 HFWLGKNTSTDEAAVAA-YKSVELDNYLNGSPVQHREVQGGESIRFRGY 68 (82)
Q Consensus 21 y~W~G~~ss~de~~aaa-~~a~~ld~~l~~~~vq~Rv~QGkEp~~Fl~l 68 (82)
.+|++.-+.--.+.|-- +.+.-+.. |.|.+.++|- .||+||+.+.+
T Consensus 107 l~~q~~~~l~vrreAlerL~~~GvrG-L~G~~~~lrf-R~k~pPeLleL 153 (237)
T TIGR02264 107 LALQAWSLLLIRIEALERLRAAGVRG-LHGAPGDLRF-RGKNPPELLEL 153 (237)
T ss_pred ceecCcchhhhhHHHHHHHHHhcccc-ccCCccceec-cCCCCchhhhh
Confidence 47888766655544333 33444333 7788889884 78999999876
No 26
>KOG1736|consensus
Probab=22.77 E-value=2.5e+02 Score=18.99 Aligned_cols=34 Identities=15% Similarity=0.379 Sum_probs=22.4
Q ss_pred ceeeeeeee---CCceeEEE--EEEeCCCCCHHHHHHHH
Q psy13831 4 AFTFQPYKV---YGTMEQHI--HFWLGKNTSTDEAAVAA 37 (82)
Q Consensus 4 ~~~~yty~~---~~~~~~~i--y~W~G~~ss~de~~aaa 37 (82)
-|++|+|+. +|+..+-+ -||.-.-.+++-+-.=|
T Consensus 69 RFvl~sYpt~t~DGr~stPL~~Iyw~P~~~~~e~~MmYA 107 (143)
T KOG1736|consen 69 RFVLYSYPTTTDDGRVSTPLCFIYWSPVGCKPEQQMMYA 107 (143)
T ss_pred cEEEEECcccccCCcccccEEEEEecCccCCHHHHHHHH
Confidence 389999954 55666555 47988767776664433
No 27
>KOG2586|consensus
Probab=20.94 E-value=1.2e+02 Score=22.24 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=16.3
Q ss_pred CCceeeeeee---------eCCceeEEEEEEeC
Q psy13831 2 PDAFTFQPYK---------VYGTMEQHIHFWLG 25 (82)
Q Consensus 2 ~~~~~~yty~---------~~~~~~~~iy~W~G 25 (82)
+|-|+|||-+ ..|....++|||--
T Consensus 82 ~~gf~fytn~~~srk~kdL~~NP~Aal~Fyw~~ 114 (228)
T KOG2586|consen 82 HDGFVFYTNYGTSRKGKDLQENPNAALLFYWED 114 (228)
T ss_pred CCCeEEEeeccccccccccccCCcceEEEeehh
Confidence 5778999875 12335577899953
No 28
>KOG3326|consensus
Probab=20.88 E-value=41 Score=23.19 Aligned_cols=34 Identities=12% Similarity=0.237 Sum_probs=24.6
Q ss_pred eeEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCC
Q psy13831 16 MEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNG 49 (82)
Q Consensus 16 ~~~~iy~W~G~~ss~de~~aaa~~a~~ld~~l~~ 49 (82)
..++||||.-...+.-|.-.+...-..|.++.+.
T Consensus 107 ~dWDi~YWaTe~kp~Pe~~~s~~V~~~L~e~v~n 140 (154)
T KOG3326|consen 107 NDWDIYYWATETKPPPEKVESSEVFKLLKEFVKN 140 (154)
T ss_pred CCchhhhhhccCCCCchhhhhHHHHHHHHHHHHh
Confidence 4789999998877766666665555666666655
No 29
>PF06205 GT36_AF: Glycosyltransferase 36 associated family ; InterPro: IPR010403 This domain is found in the NvdB protein (P20471 from SWISSPROT), which is involved in the production of beta-(1-->2)-glucan.; PDB: 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A ....
Probab=20.03 E-value=94 Score=18.85 Aligned_cols=29 Identities=24% Similarity=0.273 Sum_probs=18.0
Q ss_pred ceeeeeee-eCCceeEEEEEEeCCCCCHHH
Q psy13831 4 AFTFQPYK-VYGTMEQHIHFWLGKNTSTDE 32 (82)
Q Consensus 4 ~~~~yty~-~~~~~~~~iy~W~G~~ss~de 32 (82)
|..+++-- -..+.+..|.||+|...+.+|
T Consensus 61 c~al~~~v~L~PGe~~~v~f~lG~~~s~ee 90 (90)
T PF06205_consen 61 CAALQVRVTLEPGEEKEVVFLLGAAESREE 90 (90)
T ss_dssp EEEEEEEEEE-TT-EEEEEEEEEEEETHGG
T ss_pred EEEEEEEEEECCCCEEEEEEEEEEeCCCCC
Confidence 45555553 355667778999998766654
Done!