RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13831
(82 letters)
>gnl|CDD|200446 cd11290, gelsolin_S1_like, Gelsolin sub-domain 1-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin_like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 113
Score = 105 bits (265), Expect = 1e-31
Identities = 39/62 (62%), Positives = 44/62 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G++ IH+WLGK S DEA AA K+VELD+YL G PVQHREVQG ES F YFK GI
Sbjct: 48 GSLSYDIHYWLGKEASQDEAGAAAIKAVELDDYLGGRPVQHREVQGHESEEFLSYFKKGI 107
Query: 74 SY 75
Y
Sbjct: 108 IY 109
>gnl|CDD|214590 smart00262, GEL, Gelsolin homology domain.
Gelsolin/severin/villin homology domain.
Calcium-binding and actin-binding. Both intra- and
extracellular domains.
Length = 90
Score = 62.3 bits (152), Expect = 1e-14
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREV-QGGESIRFRGYFKNG 72
I+ W+GK +S DE AA +VELD+ L PVQ R V +G E F F
Sbjct: 35 SEIYVWVGKKSSQDEKKKAAELAVELDDTLGPGPVQVRVVDEGKEPPEFWSLFGGW 90
>gnl|CDD|200449 cd11293, gelsolin_S4_like, Gelsolin sub-domain 4-like domain found
in gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating bundles
of F-actin with uniform filament polarity, which is most
likely mediated by their extra villin headpiece domain.
Many family members have also adopted functions in the
nucleus, including the regulation of transcription.
Supervillin, gelsolin, and flightless I are involved in
intracellular signaling via nuclear hormone receptors.
The gelsolin-like domain is distantly related to the
actin depolymerizing domains found in cofilin and
similar proteins.
Length = 101
Score = 56.5 bits (137), Expect = 2e-12
Identities = 27/60 (45%), Positives = 34/60 (56%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G E ++FW G+++S DE A AA +VELD L G VQ R VQG E F F
Sbjct: 42 YQGGGKEEHILYFWQGRHSSQDERAAAALLTVELDEELKGRAVQVRVVQGKEPPHFLALF 101
>gnl|CDD|201354 pfam00626, Gelsolin, Gelsolin repeat.
Length = 76
Score = 52.3 bits (126), Expect = 6e-11
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELD-NYLNGSPVQHREVQGGESIRFR 66
I W+GK +S DE AA + ++D + P R VQG E RF
Sbjct: 27 FTIFLWVGKGSSPDEKLFAALLAAQIDLDERFPLPEVDRVVQGKEPARFL 76
>gnl|CDD|200436 cd11280, gelsolin_like, Tandemly repeated domains found in
gelsolin, severin, villin, and related proteins.
Gelsolin repeats occur in gelsolin, severin, villin,
advillin, villidin, supervillin, flightless, quail,
fragmin, and other proteins, usually in several copies.
They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 88
Score = 45.1 bits (107), Expect = 7e-08
Identities = 19/51 (37%), Positives = 23/51 (45%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
I+ W G+ +S E A AA + ELD G P R QG E F F
Sbjct: 38 EIYIWQGRASSQAELAAAALLAKELDEERKGKPEIVRIRQGQEPREFWSLF 88
>gnl|CDD|200448 cd11292, gelsolin_S3_like, Gelsolin sub-domain 3-like domain
found in gelsolin, severin, villin, and related
proteins. Gelsolin repeats occur in gelsolin, severin,
villin, advillin, villidin, supervillin, flightless,
quail, fragmin, and other proteins, usually in several
copies. They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 98
Score = 41.5 bits (98), Expect = 2e-06
Identities = 18/56 (32%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVEL---DNYLNGSPVQHREVQGGESIRFRGYFKN 71
I W+GK S DE A + E + V R +GGES F+ F N
Sbjct: 44 EIFVWVGKGASLDERKAALKNAEEFLRKKKRPPYTQV-TRVTEGGESALFKSKFAN 98
>gnl|CDD|200447 cd11291, gelsolin_S6_like, Gelsolin sub-domain 6-like domain
found in gelsolin, severin, villin, and related
proteins. Gelsolin repeats occur in gelsolin, severin,
villin, advillin, villidin, supervillin, flightless,
quail, fragmin, and other proteins, usually in several
copies. They co-occur with villin headpiece domains,
leucine-rich repeats, and several other domains. These
gelsolin-related actin binding proteins (GRABPs) play
regulatory roles in the assembly and disassembly of
actin filaments; they are involved in F-actin capping,
uncapping, severing, or the nucleation of actin
filaments. Severing of actin filaments is Ca2+
dependent. Villins are also linked to generating
bundles of F-actin with uniform filament polarity,
which is most likely mediated by their extra villin
headpiece domain. Many family members have also adopted
functions in the nucleus, including the regulation of
transcription. Supervillin, gelsolin, and flightless I
are involved in intracellular signaling via nuclear
hormone receptors. The gelsolin-like domain is
distantly related to the actin depolymerizing domains
found in cofilin and similar proteins.
Length = 99
Score = 36.9 bits (86), Expect = 1e-04
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
Query: 18 QHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHRE--------VQGGESIRFRGYF 69
+ W+G S+DE A S + Y+ P+ + QG E F GYF
Sbjct: 39 DEVFVWVGSE-SSDEEKKEALTSAK--KYIETDPLGRSKPRTPIYLVKQGNEPPTFTGYF 95
>gnl|CDD|236622 PRK09774, PRK09774, fec operon regulator FecR; Reviewed.
Length = 319
Score = 27.8 bits (62), Expect = 0.50
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 47 LNGSPVQHREVQGGESIRF 65
L +P Q R V GES++F
Sbjct: 206 LASAPAQKRIVNAGESLQF 224
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 28.1 bits (63), Expect = 0.50
Identities = 12/53 (22%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 2 PDAFTFQPYKVY---GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSP 51
+ + +V+ GT+ ++ L ++DE AA + V L+ L +P
Sbjct: 411 RETISVLTQRVHLFSGTLRDNLR--LANPDASDEELWAALQQVGLEKLLESAP 461
>gnl|CDD|221237 pfam11810, DUF3332, Domain of unknown function (DUF3332). This
family of proteins are functionally uncharacterized.
This family is only found in bacteria.
Length = 175
Score = 27.3 bits (61), Expect = 0.62
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 9/51 (17%)
Query: 20 IHFWLGKNTSTDEAAVA-----AYKSV--ELDNYLNGSPVQH--REVQGGE 61
I FW G N T + AVA Y V +LD L +PV+ RE +G
Sbjct: 69 IEFWSGSNPITGKPAVADTPVETYFKVNGQLDKSLTEAPVKITNREGEGAT 119
>gnl|CDD|224515 COG1599, RFA1, Single-stranded DNA-binding replication protein A
(RPA), large (70 kD) subunit and related ssDNA-binding
proteins [DNA replication, recombination, and repair].
Length = 407
Score = 26.3 bits (58), Expect = 1.6
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 46 YLNGSPVQHREVQGGESIRFRGYF 69
+ GS ++ + QGGES F
Sbjct: 176 VVVGSEIKTFDNQGGESKVFSNEL 199
>gnl|CDD|235437 PRK05380, pyrG, CTP synthetase; Validated.
Length = 533
Score = 24.2 bits (54), Expect = 9.2
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 5/20 (25%)
Query: 43 LDNYLN---G--SPVQHREV 57
LD Y+N G SP QH EV
Sbjct: 40 LDPYINVDPGTMSPYQHGEV 59
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0738 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,181,176
Number of extensions: 313163
Number of successful extensions: 243
Number of sequences better than 10.0: 1
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 17
Length of query: 82
Length of database: 10,937,602
Length adjustment: 51
Effective length of query: 31
Effective length of database: 8,675,548
Effective search space: 268941988
Effective search space used: 268941988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)