RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13831
(82 letters)
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl
histidine, ATP-binding, cytoskeleton, nucleotide-BIN
phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP:
d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A*
1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S*
1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S*
3a5o_S*
Length = 128
Score = 78.8 bits (194), Expect = 6e-21
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 58 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 117
Query: 74 SYHR 77
Y +
Sbjct: 118 KYKK 121
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding
protein, cytoskeletal protein; NMR {Gallus gallus} SCOP:
d.109.1.1 PDB: 2vil_A
Length = 126
Score = 77.8 bits (191), Expect = 1e-20
Identities = 33/68 (48%), Positives = 41/68 (60%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
K +IH+WLGKN+S DE AA + ++D YL VQHREVQG ES FR YF
Sbjct: 51 RKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYF 110
Query: 70 KNGISYHR 77
K G+ Y +
Sbjct: 111 KQGLIYKQ 118
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin
beta-4; structural protein; HET: ATP; 2.00A {Homo
sapiens} SCOP: d.109.1.1
Length = 147
Score = 73.9 bits (181), Expect = 1e-18
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 55 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 114
Query: 74 SYHR 77
Y +
Sbjct: 115 KYKK 118
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle
protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP:
d.109.1.1 PDB: 2ff6_G*
Length = 150
Score = 73.5 bits (180), Expect = 1e-18
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 14 GTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGI 73
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G+
Sbjct: 77 GNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSGL 136
Query: 74 SYHR 77
Y +
Sbjct: 137 KYKK 140
>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
protein, protein D packing, contractIle protein; 2.50A
{Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A
3ffk_A* 1rgi_G*
Length = 729
Score = 75.7 bits (185), Expect = 5e-18
Identities = 34/66 (51%), Positives = 45/66 (68%)
Query: 13 YGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNG 72
G ++ +H+WLG S DE+ AA +V+LD+YLNG VQHREVQG ES F GYFK+G
Sbjct: 52 NGILQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGYFKSG 111
Query: 73 ISYHRK 78
+ Y +
Sbjct: 112 LKYKKG 117
Score = 64.6 bits (156), Expect = 4e-14
Identities = 23/69 (33%), Positives = 31/69 (44%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 427 YRHGSRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 486
Query: 70 KNGISYHRK 78
K
Sbjct: 487 GGKPMIVYK 495
Score = 35.3 bits (80), Expect = 8e-04
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVA---AYKSVELDNYLNGSPVQHREVQGGESIRFR 66
+ + + I W GK + +E A A + +Y + V +GGE+ FR
Sbjct: 279 FILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQV-SVLPEGGETPLFR 337
Query: 67 GYFKN 71
+FKN
Sbjct: 338 QFFKN 342
Score = 30.7 bits (68), Expect = 0.035
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 18 QHIHFWLGKNTSTDE---AAVAAYKSVELDNYLNGSPVQ-HREVQGGESIRFRGYFKN 71
+ W+GK++ +E A +A + ++ D QG E F G+F
Sbjct: 652 DQVFVWVGKDSQDEEKTEALTSAKRYIDTDPAHRDRRTPITVVKQGFEPPSFVGWFLG 709
>1j72_A Macrophage capping protein; actin, human, CAP G, GCAP39, MBHL, GELS
structural protein; 2.50A {Homo sapiens} SCOP: d.109.1.1
d.109.1.1 d.109.1.1 PDB: 1jhw_A
Length = 347
Score = 72.6 bits (177), Expect = 5e-17
Identities = 30/69 (43%), Positives = 38/69 (55%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
H+H W+G+ +S DE A +V+LD+YL G PVQHREVQG ES F YF
Sbjct: 51 LHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYF 110
Query: 70 KNGISYHRK 78
G+ Y
Sbjct: 111 PRGLKYQEG 119
Score = 36.0 bits (82), Expect = 4e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 18 QHIHFWLGKNTSTDEAAVA---AYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71
I+ W G+ + E A A + Y + V+ QG ES F+ +FK+
Sbjct: 290 GKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVE-ILPQGRESPIFKQFFKD 345
>2fh1_A Gelsolin; calcium, contractIle protein; 1.55A {Homo sapiens} SCOP:
d.109.1.1 d.109.1.1 d.109.1.1 PDB: 1p8x_A 2fh2_A 2fh3_A
2fh4_A 1h1v_G* 1nph_A
Length = 344
Score = 66.4 bits (161), Expect = 7e-15
Identities = 24/69 (34%), Positives = 32/69 (46%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y+ G Q I+ W G ++ DE A +A + +LD L G+PVQ R VQG E F
Sbjct: 42 YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 101
Query: 70 KNGISYHRK 78
K
Sbjct: 102 GGKPMIIYK 110
Score = 30.6 bits (68), Expect = 0.040
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 18 QHIHFWLGKNTSTDE---AAVAAYKSVELDNYLNGSPVQ-HREVQGGESIRFRGYFKN 71
+ W+GK++ +E A +A + +E D QG E F G+F
Sbjct: 267 DQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPITVVKQGFEPPSFVGWFLG 324
>3fg7_A Villin-1; actin binding protein, gelsolin, actin capping,
actin-binding, calcium, cytoplasm, cytoskeleton,
structural protein; 2.00A {Homo sapiens}
Length = 398
Score = 65.6 bits (159), Expect = 2e-14
Identities = 21/69 (30%), Positives = 30/69 (43%)
Query: 10 YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
Y + ++ W G S DE +AY++V LD NG PVQ R G E F
Sbjct: 97 YLIGEKQHYLLYVWQGSQASQDEITASAYQAVILDQKYNGEPVQIRVPMGKEPPHLMSIF 156
Query: 70 KNGISYHRK 78
K + ++
Sbjct: 157 KGRMVVYQG 165
Score = 30.2 bits (67), Expect = 0.047
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 4/58 (6%)
Query: 18 QHIHFWLGKNTSTDE---AAVAAYKSVELDNYLNGSPVQ-HREVQGGESIRFRGYFKN 71
+ FW+GK+ + +E AA A + ++ QG E F G+F
Sbjct: 320 DQVFFWIGKHANEEEKKAAATTAQEYLKTHPSGRDPETPIIVVKQGHEPPTFTGWFLA 377
>3fg6_A Adseverin, scinderin; C-terminus of adseverin, actin capping,
actin-binding, cytos phosphoprotein, actin-binding
protein; 3.00A {Homo sapiens}
Length = 371
Score = 61.8 bits (149), Expect = 3e-13
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 17 EQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYH 76
Q I+ W G N + DE +A+ +V+LD L G VQ R QG E + FK+
Sbjct: 90 GQIIYTWQGANATRDELTTSAFLTVQLDRSLGGQAVQIRVSQGKEPVHLLSLFKDKPLII 149
Query: 77 RK 78
K
Sbjct: 150 YK 151
Score = 31.0 bits (69), Expect = 0.026
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 4/58 (6%)
Query: 18 QHIHFWLGKNTSTDEAAVA---AYKSVELDNYLNGSPVQ-HREVQGGESIRFRGYFKN 71
+ I W+GK+ + E + A +E D QG E F G+F
Sbjct: 308 EQIFIWIGKDANEVEKKESLKSAKMYLETDPSGRDKRTPIVIIKQGHEPPTFTGWFLG 365
Score = 25.2 bits (54), Expect = 2.9
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 6/64 (9%)
Query: 12 VYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71
V + + W+GK S +E A + + L ++ +E G E F
Sbjct: 198 VLKLPQNSGYIWVGKGASQEEEKGAE----YVASVLKCKTLRIQE--GEEPEEFWNSLGG 251
Query: 72 GISY 75
Y
Sbjct: 252 KKDY 255
>3r24_B Non-structural protein 10 and non-structural PROT;
methyltransferase, zinc-finger, transferase, viral
protein; HET: SAM; 2.00A {Sars coronavirus} PDB: 2g9t_A
2ga6_A
Length = 155
Score = 25.8 bits (56), Expect = 1.6
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 21 HFWLGKNTSTDEAAVAAYKSVELDNYLNGSPV 52
W G S D+ +S + +LNG V
Sbjct: 124 GMWKGYGCSCDQLREPLMQSADASTFLNGFAV 155
>1v2a_A Glutathione transferase GST1-6; glutathione S-transferase,
detoxification, xenobiotics; HET: GTS; 2.15A {Anopheles
dirus} SCOP: a.45.1.1 c.47.1.5
Length = 210
Score = 25.2 bits (56), Expect = 2.0
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 7 FQPYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVE-LDNYLNGSP 51
F +Y + IH + K +DE +++ L+ ++
Sbjct: 98 FDIGTLYKRIIDVIHLVMKKEQPSDEQMEKLKGALDLLEQFVTERA 143
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
protein; 2.10A {Human papillomavirus type 18} SCOP:
c.37.1.20
Length = 212
Score = 25.2 bits (55), Expect = 2.4
Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 7 FQPYKVYGTMEQHIHFWLG-----KNTSTDEAAVAA--YKSVELDNYLNGSPV 52
F V + HFWL K D+A Y + N L+G+P+
Sbjct: 81 FIQGAVISFVNSTSHFWLEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPI 133
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.2 bits (54), Expect = 3.5
Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKNGISYH 76
I+ L K +E A+ ++S+ +D+Y + + + YF + I +H
Sbjct: 430 SIYLEL-KVKLENEYAL--HRSI-VDHY---NIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Score = 24.0 bits (51), Expect = 9.0
Identities = 11/76 (14%), Positives = 21/76 (27%), Gaps = 13/76 (17%)
Query: 9 PYKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNY--LNGSPVQHREVQGGESIRFR 66
P + W S V +L Y + P + + +
Sbjct: 388 PTILLSL------IWFDVIKSDVMVVVN-----KLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 67 GYFKNGISYHRKVLTH 82
+N + HR ++ H
Sbjct: 437 VKLENEYALHRSIVDH 452
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding,
voluminous binding cavity, venus FLY- trap, peptide
binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A
3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Length = 590
Score = 24.4 bits (53), Expect = 5.0
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 10/82 (12%)
Query: 4 AFTFQPYKV--YGTMEQHIHFWLGKNT--------STDEAAVAAYKSVELDNYLNGSPVQ 53
F + + ++W K + +VAA S + D Q
Sbjct: 223 PFKPENVVAGESIKYVPNPYYWGEKPKLNSITYEVVSTAKSVAALSSSKYDIINGMVSSQ 282
Query: 54 HREVQGGESIRFRGYFKNGISY 75
+++V+ + + G IS
Sbjct: 283 YKQVKNLKGYKVLGQQAMYISL 304
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 24.1 bits (52), Expect = 6.5
Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 7/53 (13%)
Query: 7 FQPYKVYGTMEQHIHFWLGKNTST-----DEA--AVAAYKSVELDNYLNGSPV 52
F V HFWL T D+A A Y L N L+G PV
Sbjct: 149 FLGGSVLSFANHKSHFWLASLADTRAALVDDATHACWRYFDTYLRNALDGYPV 201
>1vrb_A Putative asparaginyl hydroxylase; 2636534, structural genomi center
for structural genomics, JCSG, protein structure INI
PSI, oxidoreductase; 2.60A {Bacillus subtilis} SCOP:
b.82.2.11
Length = 342
Score = 24.0 bits (51), Expect = 7.5
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 19 HIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71
++ G+ D A K + DN V H+ + GY ++
Sbjct: 246 ALNITFGQPAWLDLMLAALRKKLISDNRFRELAVNHQSLHESSKSELNGYLES 298
>1w96_A ACC, acetyl-coenzyme A carboxylase; ligase, obesity, diabetes,
fatty acid metabolism, structure-based drug design; HET:
S1A; 1.8A {Saccharomyces cerevisiae} SCOP: b.84.2.1
c.30.1.1 d.142.1.2 PDB: 1w93_A
Length = 554
Score = 23.8 bits (52), Expect = 9.6
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 66 RGYFKNGISYHRKVLTH 82
RG F+ + Y K+L
Sbjct: 521 RGDFRTTVEYLIKLLET 537
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming),
cytidine 5 triphosphate synthase, ammonia lyase; 2.30A
{Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB:
2ad5_A*
Length = 545
Score = 23.6 bits (52), Expect = 9.9
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 5/20 (25%)
Query: 43 LDNYLN---G--SPVQHREV 57
LD Y+N G SP+QH EV
Sbjct: 41 LDPYINVDPGTMSPIQHGEV 60
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.415
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,295,548
Number of extensions: 62159
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 34
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)