RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13831
         (82 letters)



>d1j72a1 d.109.1.1 (A:11-124) Macrophage capping protein Cap G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 114

 Score = 82.2 bits (203), Expect = 7e-23
 Identities = 30/68 (44%), Positives = 38/68 (55%)

Query: 10  YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
                    H+H W+G+ +S DE    A  +V+LD+YL G PVQHREVQG ES  F  YF
Sbjct: 41  LHNGPEEVSHLHLWIGQQSSRDEQGACAVLAVQLDDYLGGRPVQHREVQGNESDLFMSYF 100

Query: 70  KNGISYHR 77
             G+ Y  
Sbjct: 101 PRGLKYQE 108


>d3cipg1 d.109.1.1 (G:2-125) Gelsolin {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 124

 Score = 78.0 bits (192), Expect = 4e-21
 Identities = 34/69 (49%), Positives = 46/69 (66%), Gaps = 1/69 (1%)

Query: 10  YKVYGTMEQH-IHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGY 68
            ++     Q+ +H+WLG   S DE+  AA  +V+LD+YLNG  VQHREVQG ES  F GY
Sbjct: 49  VQLRNGNLQYDLHYWLGNECSQDESGAAAIFTVQLDDYLNGRAVQHREVQGFESATFLGY 108

Query: 69  FKNGISYHR 77
           FK+G+ Y +
Sbjct: 109 FKSGLKYKK 117


>d2vika_ d.109.1.1 (A:) Villin, domain 1 (res. 1-126) {Chicken
           (Gallus gallus) [TaxId: 9031]}
          Length = 126

 Score = 77.6 bits (191), Expect = 7e-21
 Identities = 33/68 (48%), Positives = 41/68 (60%)

Query: 10  YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
            K       +IH+WLGKN+S DE   AA  + ++D YL    VQHREVQG ES  FR YF
Sbjct: 51  RKTGSGFSYNIHYWLGKNSSQDEQGAAAIYTTQMDEYLGSVAVQHREVQGHESETFRAYF 110

Query: 70  KNGISYHR 77
           K G+ Y +
Sbjct: 111 KQGLIYKQ 118


>d2fh1a1 d.109.1.1 (A:412-532) Gelsolin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 121

 Score = 74.9 bits (184), Expect = 7e-20
 Identities = 24/69 (34%), Positives = 32/69 (46%)

Query: 10  YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVELDNYLNGSPVQHREVQGGESIRFRGYF 69
           Y+  G   Q I+ W G  ++ DE A +A  + +LD  L G+PVQ R VQG E       F
Sbjct: 42  YRHGGRQGQIIYNWQGAQSTQDEVAASAILTAQLDEELGGTPVQSRVVQGKEPAHLMSLF 101

Query: 70  KNGISYHRK 78
                   K
Sbjct: 102 GGKPMIIYK 110


>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 107

 Score = 45.4 bits (107), Expect = 2e-08
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 10  YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVEL--DNYLNGSPVQHREVQGGESIRFRG 67
           + +   +   I+ W G+  +  E   A   +           +       QG ES  F+ 
Sbjct: 42  FVLDNGLCGKIYIWKGRKANEKERQAALQVAEGFISRMQYAPNTQVEILPQGRESPIFKQ 101

Query: 68  YFKN 71
           +FK+
Sbjct: 102 FFKD 105


>d1d0na3 d.109.1.1 (A:263-383) Gelsolin {Horse (Equus caballus)
           [TaxId: 9796]}
          Length = 121

 Score = 40.8 bits (95), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 10  YKVYGTMEQHIHFWLGKNTSTDEAAVAAYKSVEL--DNYLNGSPVQHREVQGGESIRFRG 67
           + +    +  I  W GK  + +E   A   + +                 +GGE+  FR 
Sbjct: 43  FILDHGKDGKIFVWKGKQANMEERKAALKTASDFISKMDYPKQTQVSVLPEGGETPLFRQ 102

Query: 68  YFKN 71
           +FKN
Sbjct: 103 FFKN 106


>d2fh1a3 d.109.1.1 (A:629-741) Gelsolin {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 113

 Score = 27.7 bits (61), Expect = 0.085
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 18  QHIHFWLGKNTSTDEAAVAA-----YKSVELDNYLNGSPVQHREVQGGESIRFRGYFKN 71
             +  W+GK++  +E   A      Y   +  N    +P+     QG E   F G+F  
Sbjct: 50  DQVFVWVGKDSQEEEKTEALTSAKRYIETDPANRDRRTPIT-VVKQGFEPPSFVGWFLG 107


>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase,
           PGDH {Human (Homo sapiens) [TaxId: 9606]}
          Length = 254

 Score = 23.8 bits (51), Expect = 2.6
 Identities = 7/25 (28%), Positives = 14/25 (56%), Gaps = 3/25 (12%)

Query: 44  DNYLNGSPVQHREVQGGESIRFRGY 68
           D+ LNG+ +   ++   + I F+ Y
Sbjct: 233 DDALNGAIM---KITTSKGIHFQDY 254


>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia
          coli [TaxId: 562]}
          Length = 106

 Score = 22.2 bits (47), Expect = 9.1
 Identities = 7/33 (21%), Positives = 17/33 (51%)

Query: 24 LGKNTSTDEAAVAAYKSVELDNYLNGSPVQHRE 56
          L  +T+T+  +VA +    ++ +    P +H +
Sbjct: 3  LAIDTATEACSVALWNDGTVNAHFELCPREHTQ 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0620    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 316,725
Number of extensions: 11831
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 10
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)