Query psy13834
Match_columns 104
No_of_seqs 103 out of 1074
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 21:38:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13834.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13834hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.6 2.4E-15 5.3E-20 97.2 6.2 92 4-97 46-156 (160)
2 KOG0027|consensus 99.6 7.6E-15 1.6E-19 94.3 7.3 90 4-97 34-149 (151)
3 cd05022 S-100A13 S-100A13: S-1 99.5 1.7E-13 3.7E-18 81.1 5.5 61 36-98 13-76 (89)
4 PF13499 EF-hand_7: EF-hand do 99.4 1.7E-12 3.6E-17 72.3 6.3 58 36-95 5-66 (66)
5 cd05027 S-100B S-100B: S-100B 99.4 2.7E-12 6E-17 75.8 6.6 61 36-98 13-80 (88)
6 PF13833 EF-hand_8: EF-hand do 99.4 8.4E-12 1.8E-16 67.0 7.4 52 46-97 1-53 (54)
7 KOG0028|consensus 99.3 4.8E-12 1E-16 81.3 6.8 92 4-97 59-170 (172)
8 cd05029 S-100A6 S-100A6: S-100 99.3 7.5E-12 1.6E-16 73.9 6.3 61 36-98 15-80 (88)
9 KOG0037|consensus 99.3 1.6E-11 3.4E-16 82.4 8.0 90 7-98 87-189 (221)
10 KOG0031|consensus 99.3 1.9E-11 4.1E-16 78.2 7.8 92 5-98 59-166 (171)
11 KOG0030|consensus 99.3 3.5E-12 7.6E-17 80.2 4.4 90 4-96 37-150 (152)
12 cd05026 S-100Z S-100Z: S-100Z 99.3 2.5E-11 5.5E-16 72.3 6.3 61 36-98 15-82 (93)
13 cd05031 S-100A10_like S-100A10 99.2 2.8E-11 6.1E-16 72.1 6.1 61 36-98 13-80 (94)
14 cd00052 EH Eps15 homology doma 99.2 5.4E-11 1.2E-15 65.9 6.3 59 36-98 4-62 (67)
15 PTZ00184 calmodulin; Provision 99.2 6.8E-11 1.5E-15 74.4 7.4 89 7-97 40-148 (149)
16 cd05025 S-100A1 S-100A1: S-100 99.2 5.3E-11 1.1E-15 70.6 6.4 61 36-98 14-81 (92)
17 PTZ00183 centrin; Provisional 99.2 1.2E-10 2.5E-15 74.2 7.4 89 7-97 46-154 (158)
18 KOG0027|consensus 99.2 1.1E-10 2.3E-15 75.0 6.9 62 36-99 13-74 (151)
19 COG5126 FRQ1 Ca2+-binding prot 99.1 7.6E-11 1.7E-15 76.3 5.1 61 36-99 25-85 (160)
20 smart00027 EH Eps15 homology d 99.1 2.1E-10 4.5E-15 68.5 6.6 59 36-98 15-73 (96)
21 cd00051 EFh EF-hand, calcium b 99.1 3.6E-10 7.8E-15 60.6 6.4 58 36-95 5-62 (63)
22 cd00213 S-100 S-100: S-100 dom 99.1 2.1E-10 4.6E-15 67.3 5.4 61 36-98 13-80 (88)
23 PTZ00183 centrin; Provisional 99.0 7.5E-09 1.6E-13 65.8 9.6 60 36-97 22-81 (158)
24 PF14658 EF-hand_9: EF-hand do 99.0 4.5E-09 9.7E-14 58.6 7.2 60 36-97 3-64 (66)
25 cd05023 S-100A11 S-100A11: S-1 99.0 2.2E-09 4.7E-14 63.5 6.1 62 36-99 14-82 (89)
26 KOG0034|consensus 99.0 2.6E-09 5.6E-14 71.0 7.0 61 36-98 109-176 (187)
27 KOG0036|consensus 99.0 1.1E-09 2.4E-14 79.5 5.1 96 3-101 39-149 (463)
28 cd05030 calgranulins Calgranul 98.9 2.3E-09 5E-14 63.2 4.9 61 36-98 13-80 (88)
29 cd00252 SPARC_EC SPARC_EC; ext 98.9 5.6E-09 1.2E-13 64.6 5.7 56 36-97 53-108 (116)
30 PTZ00184 calmodulin; Provision 98.9 8.2E-09 1.8E-13 64.8 6.5 61 36-98 16-76 (149)
31 KOG0031|consensus 98.9 6.9E-09 1.5E-13 66.5 5.7 76 19-102 22-97 (171)
32 KOG0028|consensus 98.9 6.6E-09 1.4E-13 66.9 5.4 61 36-98 38-98 (172)
33 KOG0038|consensus 98.8 4.2E-08 9.1E-13 62.7 8.4 86 10-97 87-177 (189)
34 KOG0041|consensus 98.7 1.8E-08 3.9E-13 67.3 4.7 61 36-98 104-164 (244)
35 KOG0044|consensus 98.7 6.3E-08 1.4E-12 64.6 7.2 67 27-97 98-175 (193)
36 KOG0044|consensus 98.6 1.2E-07 2.6E-12 63.3 5.2 61 36-98 69-129 (193)
37 PF00036 EF-hand_1: EF hand; 98.6 1.6E-07 3.5E-12 44.3 4.0 28 70-97 1-28 (29)
38 PF14788 EF-hand_10: EF hand; 98.5 7.7E-07 1.7E-11 47.1 6.3 49 50-98 2-50 (51)
39 cd05024 S-100A10 S-100A10: A s 98.5 6.6E-07 1.4E-11 53.0 6.2 60 36-98 13-77 (91)
40 KOG0030|consensus 98.5 1.4E-07 3.1E-12 59.6 3.3 63 36-100 16-80 (152)
41 PLN02964 phosphatidylserine de 98.4 7.1E-07 1.5E-11 68.8 6.6 60 36-97 184-243 (644)
42 PF12763 EF-hand_4: Cytoskelet 98.3 7E-06 1.5E-10 49.8 6.9 56 36-96 15-70 (104)
43 KOG0377|consensus 98.2 3.3E-06 7.1E-11 62.5 6.0 61 36-98 552-616 (631)
44 PLN02964 phosphatidylserine de 98.2 3.7E-06 8E-11 64.9 5.4 57 36-98 148-208 (644)
45 PF00036 EF-hand_1: EF hand; 98.2 1.8E-06 3.8E-11 40.7 2.3 25 36-62 5-29 (29)
46 KOG0037|consensus 98.0 1.7E-05 3.8E-10 53.6 6.0 49 42-96 103-151 (221)
47 PRK12309 transaldolase/EF-hand 98.0 1E-05 2.2E-10 59.4 5.1 47 36-97 339-385 (391)
48 PF13405 EF-hand_6: EF-hand do 98.0 4.8E-06 1E-10 39.6 2.3 26 36-63 5-31 (31)
49 KOG0036|consensus 97.9 3.6E-05 7.8E-10 56.5 6.1 61 36-98 19-80 (463)
50 PF13202 EF-hand_5: EF hand; P 97.8 6E-05 1.3E-09 34.1 3.6 23 72-94 2-24 (25)
51 KOG0046|consensus 97.7 0.00017 3.7E-09 54.4 7.4 62 36-100 24-88 (627)
52 KOG4065|consensus 97.6 0.00022 4.7E-09 44.1 5.7 57 36-94 72-142 (144)
53 PF13405 EF-hand_6: EF-hand do 97.6 0.00014 3E-09 34.4 3.8 27 70-96 1-27 (31)
54 PF10591 SPARC_Ca_bdg: Secrete 97.6 1.7E-05 3.7E-10 48.8 0.0 55 36-94 59-113 (113)
55 KOG0040|consensus 97.4 0.00042 9.1E-09 57.8 5.5 61 36-98 2258-2325(2399)
56 PF13202 EF-hand_5: EF hand; P 97.4 0.00016 3.4E-09 32.7 1.9 22 36-59 4-25 (25)
57 KOG0034|consensus 97.3 0.00073 1.6E-08 45.1 5.0 59 36-100 38-98 (187)
58 smart00054 EFh EF-hand, calciu 97.3 0.00057 1.2E-08 30.2 3.2 27 71-97 2-28 (29)
59 KOG4223|consensus 97.2 0.00026 5.5E-09 50.5 2.1 61 36-98 246-306 (325)
60 KOG4223|consensus 97.1 0.0007 1.5E-08 48.3 4.0 61 36-98 168-229 (325)
61 KOG1955|consensus 96.5 0.0031 6.7E-08 47.8 3.7 58 36-97 236-293 (737)
62 PF05517 p25-alpha: p25-alpha 96.5 0.026 5.7E-07 36.4 7.2 57 42-98 11-70 (154)
63 KOG2243|consensus 96.4 0.012 2.6E-07 49.6 6.6 59 36-97 4062-4120(5019)
64 PF13833 EF-hand_8: EF-hand do 96.4 0.0081 1.8E-07 31.5 4.0 46 11-61 5-53 (54)
65 PF13499 EF-hand_7: EF-hand do 96.3 0.01 2.2E-07 32.3 4.0 29 71-99 2-30 (66)
66 KOG2643|consensus 96.2 0.0081 1.7E-07 44.7 4.2 61 36-98 238-315 (489)
67 PF09279 EF-hand_like: Phospho 96.1 0.013 2.8E-07 33.6 4.1 60 36-98 5-70 (83)
68 smart00054 EFh EF-hand, calciu 96.1 0.0063 1.4E-07 26.6 2.2 24 36-61 5-28 (29)
69 KOG2643|consensus 95.8 0.0038 8.2E-08 46.4 1.1 52 47-98 402-454 (489)
70 PF14788 EF-hand_10: EF hand; 95.7 0.0065 1.4E-07 32.2 1.3 48 11-62 2-50 (51)
71 cd05022 S-100A13 S-100A13: S-1 95.5 0.017 3.7E-07 34.0 2.8 51 9-63 24-77 (89)
72 cd05026 S-100Z S-100Z: S-100Z 95.5 0.034 7.3E-07 32.8 4.1 50 10-63 28-83 (93)
73 KOG1029|consensus 95.4 0.019 4E-07 45.7 3.4 65 28-96 192-256 (1118)
74 KOG4251|consensus 95.3 0.011 2.3E-07 41.3 1.8 59 36-96 106-167 (362)
75 KOG0377|consensus 95.3 0.1 2.3E-06 39.3 6.8 61 36-98 469-576 (631)
76 cd05023 S-100A11 S-100A11: S-1 95.0 0.07 1.5E-06 31.3 4.5 53 9-63 26-82 (89)
77 KOG3866|consensus 94.9 0.2 4.3E-06 36.2 7.2 90 7-98 220-325 (442)
78 cd00051 EFh EF-hand, calcium b 94.8 0.06 1.3E-06 27.7 3.5 29 71-99 2-30 (63)
79 PF08976 DUF1880: Domain of un 94.6 0.035 7.5E-07 34.3 2.4 33 66-98 4-36 (118)
80 cd05029 S-100A6 S-100A6: S-100 94.3 0.14 3E-06 29.9 4.5 52 9-63 27-81 (88)
81 cd05031 S-100A10_like S-100A10 94.2 0.047 1E-06 32.0 2.4 56 9-66 25-84 (94)
82 cd05030 calgranulins Calgranul 94.0 0.065 1.4E-06 31.2 2.8 51 9-63 25-81 (88)
83 PF05042 Caleosin: Caleosin re 94.0 0.27 5.8E-06 32.5 5.9 57 42-98 16-125 (174)
84 KOG0042|consensus 94.0 0.085 1.8E-06 40.8 3.9 61 36-98 598-658 (680)
85 KOG3555|consensus 93.9 0.095 2.1E-06 38.3 3.9 59 36-100 255-313 (434)
86 cd05024 S-100A10 S-100A10: A s 93.9 0.25 5.4E-06 29.3 5.1 52 10-63 23-78 (91)
87 cd05025 S-100A1 S-100A1: S-100 93.6 0.19 4.1E-06 29.3 4.2 50 10-63 27-82 (92)
88 KOG4578|consensus 93.2 0.16 3.5E-06 36.9 4.0 81 13-97 300-398 (421)
89 KOG4666|consensus 93.1 0.1 2.2E-06 37.9 3.0 57 36-96 301-358 (412)
90 smart00027 EH Eps15 homology d 93.0 0.23 5.1E-06 29.1 4.0 29 70-98 11-39 (96)
91 cd05027 S-100B S-100B: S-100B 92.8 0.1 2.2E-06 30.5 2.2 49 10-62 26-80 (88)
92 KOG2562|consensus 92.7 0.37 8.1E-06 36.4 5.4 56 36-93 356-420 (493)
93 PF14658 EF-hand_9: EF-hand do 92.0 0.3 6.5E-06 27.2 3.3 24 36-61 40-64 (66)
94 cd00052 EH Eps15 homology doma 91.8 0.28 6.2E-06 26.2 3.1 27 72-98 2-28 (67)
95 cd00213 S-100 S-100: S-100 dom 91.7 0.31 6.7E-06 28.0 3.3 29 69-97 8-38 (88)
96 KOG0169|consensus 91.6 0.32 6.9E-06 38.7 4.1 61 36-98 141-201 (746)
97 KOG0038|consensus 91.1 0.37 8E-06 31.3 3.5 58 42-99 80-138 (189)
98 PRK12309 transaldolase/EF-hand 90.8 0.4 8.7E-06 35.6 3.9 53 7-61 327-385 (391)
99 KOG0035|consensus 90.4 0.35 7.5E-06 39.2 3.5 63 36-100 752-819 (890)
100 KOG0041|consensus 89.3 0.58 1.3E-05 31.9 3.4 34 70-103 100-134 (244)
101 PF07308 DUF1456: Protein of u 89.2 1.9 4.2E-05 24.0 5.0 46 51-96 15-60 (68)
102 KOG1029|consensus 88.2 1.5 3.2E-05 35.5 5.4 56 36-96 21-76 (1118)
103 PF11116 DUF2624: Protein of u 87.4 2.7 6E-05 24.5 5.0 51 48-98 13-63 (85)
104 cd00252 SPARC_EC SPARC_EC; ext 86.8 1.3 2.9E-05 27.2 3.7 30 66-95 45-74 (116)
105 KOG4251|consensus 85.3 1.4 3.1E-05 31.0 3.6 53 42-94 290-342 (362)
106 KOG2562|consensus 83.4 2.1 4.5E-05 32.6 3.9 60 36-98 144-203 (493)
107 PF03672 UPF0154: Uncharacteri 83.0 3.4 7.4E-05 22.9 3.8 32 48-79 30-61 (64)
108 KOG0751|consensus 82.8 4.5 9.8E-05 31.3 5.6 23 74-96 113-135 (694)
109 KOG0751|consensus 81.3 2.2 4.8E-05 32.9 3.5 55 36-92 184-239 (694)
110 cd07313 terB_like_2 tellurium 80.3 1.6 3.4E-05 25.7 2.1 52 47-98 13-66 (104)
111 PRK00523 hypothetical protein; 78.9 5.3 0.00012 22.6 3.7 31 48-78 38-68 (72)
112 PF07879 PHB_acc_N: PHB/PHA ac 77.8 7.7 0.00017 21.4 4.1 39 42-80 12-60 (64)
113 PLN02952 phosphoinositide phos 77.8 12 0.00027 29.4 6.6 54 46-100 13-68 (599)
114 PF09279 EF-hand_like: Phospho 76.7 8.2 0.00018 21.7 4.3 29 70-99 1-29 (83)
115 PF14513 DAG_kinase_N: Diacylg 76.2 3.1 6.7E-05 26.5 2.6 50 47-98 5-61 (138)
116 PF00404 Dockerin_1: Dockerin 74.8 4.6 0.0001 17.2 2.2 17 43-59 1-17 (21)
117 PRK01844 hypothetical protein; 74.7 8.1 0.00018 21.9 3.7 30 49-78 38-67 (72)
118 TIGR01848 PHA_reg_PhaR polyhyd 74.4 17 0.00037 22.2 5.4 47 42-88 12-68 (107)
119 COG3763 Uncharacterized protei 74.0 8.5 0.00018 21.7 3.6 32 48-79 37-68 (71)
120 KOG0998|consensus 73.9 0.77 1.7E-05 37.3 -0.7 58 36-97 288-345 (847)
121 PF01885 PTS_2-RNA: RNA 2'-pho 71.8 11 0.00024 25.1 4.5 39 42-80 25-63 (186)
122 KOG4666|consensus 71.8 13 0.00027 27.4 5.0 60 36-97 264-324 (412)
123 TIGR01639 P_fal_TIGR01639 Plas 71.4 12 0.00026 20.3 3.8 33 47-79 7-39 (61)
124 PF12174 RST: RCD1-SRO-TAF4 (R 70.3 4.9 0.00011 22.6 2.2 47 49-98 8-54 (70)
125 KOG3449|consensus 69.7 8.7 0.00019 23.6 3.3 51 36-93 6-56 (112)
126 PF12763 EF-hand_4: Cytoskelet 69.0 4.5 9.7E-05 24.4 2.0 24 36-61 48-71 (104)
127 PRK00819 RNA 2'-phosphotransfe 68.4 19 0.00042 23.9 5.1 38 42-79 26-63 (179)
128 PF14337 DUF4393: Domain of un 67.3 8.6 0.00019 25.2 3.3 50 54-104 18-72 (186)
129 PF09069 EF-hand_3: EF-hand; 66.1 16 0.00034 21.6 3.8 58 36-98 8-76 (90)
130 PF13623 SurA_N_2: SurA N-term 64.6 15 0.00033 23.5 3.9 42 53-94 93-144 (145)
131 PF03979 Sigma70_r1_1: Sigma-7 64.0 7.8 0.00017 22.1 2.3 33 47-81 19-51 (82)
132 PF05042 Caleosin: Caleosin re 63.7 27 0.00058 23.2 5.0 56 36-94 101-163 (174)
133 PF09336 Vps4_C: Vps4 C termin 62.7 13 0.00029 20.2 2.9 26 49-74 29-54 (62)
134 KOG1707|consensus 62.4 4.1 8.9E-05 32.0 1.1 53 36-96 320-376 (625)
135 PF07499 RuvA_C: RuvA, C-termi 62.0 20 0.00043 18.2 4.1 40 53-96 4-43 (47)
136 PTZ00373 60S Acidic ribosomal 61.7 16 0.00035 22.4 3.5 47 42-93 12-58 (112)
137 KOG0040|consensus 58.7 12 0.00026 33.1 3.1 34 65-98 2246-2282(2399)
138 KOG2871|consensus 56.9 9.7 0.00021 28.4 2.2 56 36-93 314-370 (449)
139 PF06207 DUF1002: Protein of u 56.2 23 0.00049 24.5 3.8 47 51-97 173-223 (225)
140 PF08461 HTH_12: Ribonuclease 55.7 18 0.0004 19.8 2.8 37 46-82 10-46 (66)
141 KOG1954|consensus 54.2 22 0.00048 26.9 3.7 45 47-93 457-501 (532)
142 COG4103 Uncharacterized protei 53.3 12 0.00026 24.1 1.9 61 36-101 35-98 (148)
143 PF09373 PMBR: Pseudomurein-bi 52.8 17 0.00038 17.0 2.1 16 83-98 2-17 (33)
144 cd05833 Ribosomal_P2 Ribosomal 49.6 34 0.00074 20.8 3.5 51 42-97 10-60 (109)
145 KOG4347|consensus 49.4 20 0.00043 28.6 2.9 25 36-62 560-584 (671)
146 PLN00138 large subunit ribosom 48.1 54 0.0012 20.1 4.2 46 43-93 11-56 (113)
147 PLN02222 phosphoinositide phos 47.9 53 0.0011 26.0 5.0 58 36-97 30-90 (581)
148 PRK14981 DNA-directed RNA poly 47.9 44 0.00095 20.3 3.8 26 52-77 81-106 (112)
149 PLN02228 Phosphoinositide phos 46.4 75 0.0016 25.1 5.6 51 48-98 37-93 (567)
150 PF08726 EFhand_Ca_insen: Ca2+ 46.4 12 0.00027 20.9 1.1 49 36-94 11-66 (69)
151 TIGR00135 gatC glutamyl-tRNA(G 46.3 52 0.0011 19.0 3.9 28 50-77 1-28 (93)
152 PF08414 NADPH_Ox: Respiratory 46.3 65 0.0014 19.4 4.4 58 36-100 35-95 (100)
153 cd04411 Ribosomal_P1_P2_L12p R 46.2 58 0.0013 19.7 4.1 43 50-97 17-59 (105)
154 PF01316 Arg_repressor: Argini 46.0 53 0.0012 18.3 3.7 31 49-79 19-49 (70)
155 KOG0998|consensus 45.9 10 0.00022 31.2 0.9 59 36-98 16-74 (847)
156 TIGR03573 WbuX N-acetyl sugar 45.1 67 0.0015 23.3 5.0 33 47-79 300-332 (343)
157 cd08330 CARD_ASC_NALP1 Caspase 44.2 61 0.0013 18.5 4.4 49 47-100 27-75 (82)
158 PLN02230 phosphoinositide phos 44.0 83 0.0018 25.0 5.6 59 36-97 34-102 (598)
159 cd08327 CARD_RAIDD Caspase act 43.8 52 0.0011 19.4 3.6 47 46-97 32-78 (94)
160 PF08671 SinI: Anti-repressor 43.2 35 0.00076 15.8 2.2 24 70-96 4-27 (30)
161 KOG4004|consensus 43.1 9.9 0.00022 26.0 0.4 58 36-97 192-250 (259)
162 PHA02105 hypothetical protein 42.6 57 0.0012 17.7 3.7 49 49-97 4-57 (68)
163 PF07862 Nif11: Nitrogen fixat 42.5 42 0.00092 16.9 2.8 21 51-71 28-48 (49)
164 TIGR01529 argR_whole arginine 42.4 59 0.0013 20.7 3.9 40 47-86 14-57 (146)
165 TIGR03798 ocin_TIGR03798 bacte 41.8 57 0.0012 17.5 3.8 24 51-74 26-49 (64)
166 PF05099 TerB: Tellurite resis 40.6 12 0.00026 23.0 0.5 51 47-97 37-89 (140)
167 PRK00034 gatC aspartyl/glutamy 40.3 74 0.0016 18.3 3.9 28 50-77 3-30 (95)
168 PF09068 EF-hand_2: EF hand; 39.0 27 0.00058 21.8 1.9 24 36-61 102-125 (127)
169 PRK06402 rpl12p 50S ribosomal 38.7 92 0.002 19.0 4.3 41 49-94 16-56 (106)
170 KOG4403|consensus 37.7 1.8E+02 0.0039 22.5 6.2 60 9-74 63-143 (575)
171 PRK10945 gene expression modul 37.6 79 0.0017 17.9 3.5 29 51-79 20-48 (72)
172 COG1460 Uncharacterized protei 37.1 73 0.0016 19.7 3.5 27 51-77 81-107 (114)
173 PF09312 SurA_N: SurA N-termin 37.1 37 0.0008 20.6 2.3 20 60-79 61-80 (118)
174 PLN02952 phosphoinositide phos 36.9 1.3E+02 0.0027 24.1 5.6 59 36-97 43-110 (599)
175 PRK10788 periplasmic folding c 36.1 1.6E+02 0.0035 23.1 6.2 47 52-98 98-145 (623)
176 PF09682 Holin_LLH: Phage holi 36.0 95 0.0021 18.6 4.0 25 54-78 76-100 (108)
177 KOG2351|consensus 34.9 56 0.0012 20.6 2.8 38 42-79 88-128 (134)
178 PRK09430 djlA Dna-J like membr 34.8 1E+02 0.0022 21.7 4.5 48 47-98 69-121 (267)
179 COG5562 Phage envelope protein 34.2 29 0.00063 22.1 1.5 46 47-96 54-99 (137)
180 PF07128 DUF1380: Protein of u 33.6 83 0.0018 20.1 3.5 30 51-80 28-57 (139)
181 PF06648 DUF1160: Protein of u 33.5 46 0.001 20.8 2.3 46 27-79 35-81 (122)
182 PF06384 ICAT: Beta-catenin-in 33.3 54 0.0012 18.8 2.4 19 54-72 21-39 (78)
183 cd08807 CARD_CARD10_CARMA3 Cas 32.0 87 0.0019 18.3 3.1 52 48-101 29-80 (86)
184 KOG4347|consensus 31.8 75 0.0016 25.5 3.6 50 50-99 535-585 (671)
185 PTZ00315 2'-phosphotransferase 31.1 1.4E+02 0.0031 23.7 5.0 38 42-79 398-435 (582)
186 COG1508 RpoN DNA-directed RNA 31.0 1.6E+02 0.0035 22.6 5.2 55 43-99 119-176 (444)
187 PF02037 SAP: SAP domain; Int 31.0 58 0.0012 15.3 2.0 19 49-67 3-21 (35)
188 PF01023 S_100: S-100/ICaBP ty 30.8 51 0.0011 16.5 1.8 24 36-61 11-36 (44)
189 cd08332 CARD_CASP2 Caspase act 30.1 1.2E+02 0.0025 17.6 4.1 46 47-97 32-77 (90)
190 PRK10391 oriC-binding nucleoid 30.0 89 0.0019 17.6 2.8 29 51-79 15-44 (71)
191 PF13331 DUF4093: Domain of un 29.8 1.1E+02 0.0023 17.8 3.4 37 53-95 48-86 (87)
192 TIGR03849 arch_ComA phosphosul 29.5 2E+02 0.0043 20.1 5.5 48 47-94 168-222 (237)
193 PF12419 DUF3670: SNF2 Helicas 29.4 1.3E+02 0.0029 18.8 4.0 50 45-94 79-138 (141)
194 PRK09389 (R)-citramalate synth 29.3 1.4E+02 0.003 23.0 4.7 47 52-98 320-368 (488)
195 PRK00441 argR arginine repress 29.3 1.2E+02 0.0027 19.3 3.9 42 47-88 16-61 (149)
196 PF08044 DUF1707: Domain of un 28.9 90 0.002 16.3 2.7 30 47-76 21-50 (53)
197 cd08785 CARD_CARD9-like Caspas 28.8 1.2E+02 0.0027 17.5 3.8 52 47-100 28-79 (86)
198 smart00513 SAP Putative DNA-bi 28.7 73 0.0016 14.8 2.4 19 49-67 3-21 (35)
199 cd08809 CARD_CARD9 Caspase act 28.7 1.1E+02 0.0023 18.0 3.1 52 47-100 28-79 (86)
200 KOG4070|consensus 28.6 33 0.00071 22.5 1.1 50 49-98 33-86 (180)
201 KOG4301|consensus 28.5 74 0.0016 23.7 3.0 62 36-98 113-174 (434)
202 PF13099 DUF3944: Domain of un 28.4 80 0.0017 15.2 2.2 21 66-86 13-33 (35)
203 PF03874 RNA_pol_Rpb4: RNA pol 28.3 76 0.0016 19.0 2.7 22 53-74 57-79 (117)
204 cd07176 terB tellurite resista 28.2 36 0.00077 19.8 1.2 16 47-62 16-31 (111)
205 PRK08181 transposase; Validate 28.1 1.5E+02 0.0033 20.8 4.5 48 47-97 4-51 (269)
206 KOG1265|consensus 27.5 1.9E+02 0.0042 24.6 5.3 60 36-97 226-299 (1189)
207 PF02885 Glycos_trans_3N: Glyc 27.4 1.1E+02 0.0024 16.4 3.7 15 64-78 13-27 (66)
208 PF09061 Stirrup: Stirrup; In 27.4 46 0.001 18.5 1.4 31 47-77 47-77 (79)
209 PF14069 SpoVIF: Stage VI spor 27.2 1.3E+02 0.0029 17.3 5.1 44 52-96 30-77 (79)
210 PF13624 SurA_N_3: SurA N-term 26.9 85 0.0018 19.4 2.8 48 50-97 84-132 (154)
211 cd05831 Ribosomal_P1 Ribosomal 26.9 1.5E+02 0.0032 17.8 4.2 44 47-95 15-58 (103)
212 PF11829 DUF3349: Protein of u 26.4 1.3E+02 0.0028 18.0 3.3 51 50-100 20-73 (96)
213 COG5296 Transcription factor i 26.2 2.3E+02 0.005 21.7 5.2 26 54-79 329-354 (521)
214 KOG3555|consensus 25.9 18 0.00039 26.9 -0.5 64 29-96 211-277 (434)
215 PLN02223 phosphoinositide phos 25.9 1.9E+02 0.0041 22.8 4.9 59 36-97 21-92 (537)
216 smart00657 RPOL4c DNA-directed 25.7 1.4E+02 0.0029 18.2 3.5 10 12-21 10-19 (118)
217 PF06854 Phage_Gp15: Bacteriop 25.7 61 0.0013 21.6 2.0 21 82-102 129-149 (183)
218 KOG0169|consensus 25.5 2.8E+02 0.006 22.9 5.8 57 36-98 177-233 (746)
219 cd07316 terB_like_DjlA N-termi 25.5 1.4E+02 0.0031 17.1 4.9 51 47-97 13-64 (106)
220 PF04876 Tenui_NCP: Tenuivirus 25.1 86 0.0019 20.5 2.5 31 68-98 82-112 (175)
221 COG1859 KptA RNA:NAD 2'-phosph 24.9 1.5E+02 0.0033 20.3 3.8 37 43-79 53-89 (211)
222 cd08313 Death_TNFR1 Death doma 24.8 1.3E+02 0.0029 17.1 3.1 24 49-74 8-31 (80)
223 PF03960 ArsC: ArsC family; I 24.7 79 0.0017 18.7 2.3 14 50-63 33-46 (110)
224 PRK03341 arginine repressor; P 24.3 1.5E+02 0.0032 19.5 3.6 40 47-86 27-70 (168)
225 PF02761 Cbl_N2: CBL proto-onc 24.1 1.6E+02 0.0035 17.2 6.6 53 48-100 21-73 (85)
226 COG0721 GatC Asp-tRNAAsn/Glu-t 23.6 1.7E+02 0.0037 17.3 3.7 30 49-78 2-31 (96)
227 PF12631 GTPase_Cys_C: Catalyt 23.5 1.2E+02 0.0027 16.6 2.7 37 42-78 32-72 (73)
228 PF12995 DUF3879: Domain of un 23.3 2.2E+02 0.0048 19.0 4.1 36 51-86 3-38 (186)
229 PF10208 Armet: Degradation ar 23.2 2.2E+02 0.0047 18.6 4.1 38 65-102 106-143 (154)
230 PRK04280 arginine repressor; P 23.1 1.4E+02 0.003 19.1 3.2 36 51-86 20-59 (148)
231 PF15320 RAM: mRNA cap methyla 22.8 1.4E+02 0.0031 17.2 2.9 25 70-99 2-26 (81)
232 PF02864 STAT_bind: STAT prote 22.7 2.7E+02 0.0059 19.7 4.8 47 47-93 176-231 (254)
233 PF11848 DUF3368: Domain of un 22.7 1.2E+02 0.0026 15.3 3.5 31 47-77 15-46 (48)
234 PHA02142 putative RNA ligase 22.2 1.2E+02 0.0025 22.7 3.0 28 36-65 274-301 (366)
235 PF11569 Homez: Homeodomain le 22.1 1.3E+02 0.0028 16.1 2.5 31 47-79 20-50 (56)
236 PF09687 PRESAN: Plasmodium RE 21.9 1.8E+02 0.004 17.1 3.6 30 49-78 5-34 (129)
237 PF06569 DUF1128: Protein of u 21.7 1.7E+02 0.0036 16.5 4.6 64 10-78 3-66 (71)
238 cd03035 ArsC_Yffb Arsenate Red 21.6 1.9E+02 0.0041 17.1 4.0 14 10-23 35-48 (105)
239 PLN03228 methylthioalkylmalate 21.6 2.3E+02 0.005 22.1 4.6 46 52-97 429-476 (503)
240 PF00690 Cation_ATPase_N: Cati 21.4 1.5E+02 0.0032 15.8 2.8 16 64-79 19-34 (69)
241 cd05832 Ribosomal_L12p Ribosom 21.4 2.1E+02 0.0045 17.4 4.2 43 49-96 16-58 (106)
242 COG1393 ArsC Arsenate reductas 21.2 1.2E+02 0.0025 18.6 2.5 18 9-26 36-53 (117)
243 PF06226 DUF1007: Protein of u 21.1 64 0.0014 21.8 1.5 21 42-62 59-79 (212)
244 PF09454 Vps23_core: Vps23 cor 21.0 90 0.002 17.1 1.8 16 83-98 37-52 (65)
245 smart00874 B5 tRNA synthetase 20.9 1.5E+02 0.0033 15.8 3.8 17 63-79 16-32 (71)
246 PF13592 HTH_33: Winged helix- 20.6 1.5E+02 0.0032 15.5 3.6 32 48-79 3-35 (60)
247 PF09107 SelB-wing_3: Elongati 20.6 1.4E+02 0.0031 15.3 3.0 30 47-81 8-37 (50)
248 TIGR03685 L21P_arch 50S riboso 20.5 2.1E+02 0.0046 17.2 4.2 43 49-96 16-58 (105)
249 PRK05066 arginine repressor; P 20.3 2E+02 0.0043 18.6 3.6 36 51-86 25-65 (156)
250 COG1438 ArgR Arginine represso 20.2 1.4E+02 0.0031 19.3 2.9 29 51-79 22-50 (150)
251 cd08316 Death_FAS_TNFRSF6 Deat 20.1 1.2E+02 0.0025 18.1 2.3 25 52-76 69-93 (97)
252 PF08349 DUF1722: Protein of u 20.0 2E+02 0.0044 17.3 3.4 46 52-97 52-97 (117)
253 TIGR02613 mob_myst_B mobile my 20.0 2E+02 0.0042 19.0 3.6 22 44-65 126-147 (186)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.60 E-value=2.4e-15 Score=97.19 Aligned_cols=92 Identities=22% Similarity=0.432 Sum_probs=79.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhch---h---------hhcCC---Cch-h---hcccccccCCCCcceeHHHHHHHHHHhCC
Q psy13834 4 PGAGNGYITTDVLREILKELDD---K---------ISRHP---VYQ-D---TYRVTKSTKIGNGYITTDVLREILKELDD 64 (104)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~d~---~---------~~~~~---~~~-~---~f~~~~~D~~~~g~i~~~el~~~l~~~g~ 64 (104)
++++|..+++.++..|+..++. . +...+ ..+ + +|+. ||.|++|+|+..+|..+++.+|.
T Consensus 46 lr~lg~~~s~~ei~~l~~~~d~~~~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~--fD~d~dG~Is~~eL~~vl~~lge 123 (160)
T COG5126 46 LRSLGFNPSEAEINKLFEEIDAGNETVDFPEFLTVMSVKLKRGDKEEELREAFKL--FDKDHDGYISIGELRRVLKSLGE 123 (160)
T ss_pred HHHcCCCCcHHHHHHHHHhccCCCCccCHHHHHHHHHHHhccCCcHHHHHHHHHH--hCCCCCceecHHHHHHHHHhhcc
Confidence 3578999999999999999994 2 11111 111 1 9999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 65 KISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 65 ~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.+++++++.++..++.+++|.|+|++|+..+..
T Consensus 124 ~~~deev~~ll~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 124 RLSDEEVEKLLKEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred cCCHHHHHHHHHhcCCCCCceEeHHHHHHHHhc
Confidence 999999999999999999999999999998874
No 2
>KOG0027|consensus
Probab=99.58 E-value=7.6e-15 Score=94.27 Aligned_cols=90 Identities=28% Similarity=0.493 Sum_probs=79.7
Q ss_pred CCCCCCCCCHHHHHHHHHHhchh-------------hhc-------------CCCchhhcccccccCCCCcceeHHHHHH
Q psy13834 4 PGAGNGYITTDVLREILKELDDK-------------ISR-------------HPVYQDTYRVTKSTKIGNGYITTDVLRE 57 (104)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~d~~-------------~~~-------------~~~~~~~f~~~~~D~~~~g~i~~~el~~ 57 (104)
..++|..|+++++..+++.+|.+ +.. .++. +|++ ||.+++|+|+..+|+.
T Consensus 34 lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~el~e--aF~~--fD~d~~G~Is~~el~~ 109 (151)
T KOG0027|consen 34 LRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEELKE--AFRV--FDKDGDGFISASELKK 109 (151)
T ss_pred HHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHHHHH--HHHH--HccCCCCcCcHHHHHH
Confidence 34678999999999999999965 111 1222 9999 9999999999999999
Q ss_pred HHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 58 ILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 58 ~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|..+|.+++.+++..++...+.+++|.|+|.+|+.++..
T Consensus 110 ~l~~lg~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 110 VLTSLGEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred HHHHhCCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHhc
Confidence 9999999999999999999999999999999999999874
No 3
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.45 E-value=1.7e-13 Score=81.08 Aligned_cols=61 Identities=16% Similarity=0.304 Sum_probs=58.2
Q ss_pred hcccccccC-CCCcceeHHHHHHHHHH-hCCCCCH-HHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTK-IGNGYITTDVLREILKE-LDDKISA-DDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~-~~~g~i~~~el~~~l~~-~g~~~s~-~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||. +++|+|+..||+.++.. +|..++. +++++|+...|.|++|.|+|+||+.++..+
T Consensus 13 ~F~~--fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 13 NFHK--ASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHH--HhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 8999 999 99999999999999999 9988888 899999999999999999999999998865
No 4
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=1.7e-12 Score=72.29 Aligned_cols=58 Identities=33% Similarity=0.625 Sum_probs=51.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHH----HHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDL----DMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~----~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
+|+. +|.+++|+|+.+||..++..++...+.+++ ..++..+|.+++|.|+|+||+.++
T Consensus 5 ~F~~--~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 5 AFKK--FDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHH--HSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred HHHH--HcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 8999 999999999999999999999977655544 455999999999999999999875
No 5
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.37 E-value=2.7e-12 Score=75.78 Aligned_cols=61 Identities=20% Similarity=0.458 Sum_probs=57.4
Q ss_pred hccccccc-CCCCc-ceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKST-KIGNG-YITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D-~~~~g-~i~~~el~~~l~~-----~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. || .+++| .|+..+|+.+|+. +|...++++++.++..+|.+++|+|+|.+|+.++...
T Consensus 13 aF~~--fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 13 VFHQ--YSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHH--hcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 8999 98 79999 5999999999999 8999999999999999999999999999999988754
No 6
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.35 E-value=8.4e-12 Score=66.98 Aligned_cols=52 Identities=31% Similarity=0.532 Sum_probs=49.2
Q ss_pred CCcceeHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 46 GNGYITTDVLREILKELDDK-ISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 46 ~~g~i~~~el~~~l~~~g~~-~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.+|.|+.++|+.++..+|.. ++.+++..++..+|.+++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 37999999999999888999 99999999999999999999999999999875
No 7
>KOG0028|consensus
Probab=99.34 E-value=4.8e-12 Score=81.31 Aligned_cols=92 Identities=22% Similarity=0.333 Sum_probs=80.0
Q ss_pred CCCCCCCCCHHHHHHHHHHhchh-----------------hhcCCCchh---hcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 4 PGAGNGYITTDVLREILKELDDK-----------------ISRHPVYQD---TYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~d~~-----------------~~~~~~~~~---~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
+.++|+.+..+++..|+...+.. +...-...+ +|+. +|-+++|.|+..+|+.+.+.||
T Consensus 59 mralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi~~afrl--~D~D~~Gkis~~~lkrvakeLg 136 (172)
T KOG0028|consen 59 MRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEIKKAFRL--FDDDKTGKISQRNLKRVAKELG 136 (172)
T ss_pred HHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHHHHHHHc--ccccCCCCcCHHHHHHHHHHhC
Confidence 45789999999999999999985 111111111 9999 9999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 64 DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 64 ~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.+++++++.+|+.+++++++|-|+-+||..++..
T Consensus 137 enltD~El~eMIeEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 137 ENLTDEELMEMIEEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred ccccHHHHHHHHHHhcccccccccHHHHHHHHhc
Confidence 9999999999999999999999999999999874
No 8
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.31 E-value=7.5e-12 Score=73.91 Aligned_cols=61 Identities=13% Similarity=0.337 Sum_probs=56.2
Q ss_pred hcccccccC-CC-CcceeHHHHHHHHH---HhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTK-IG-NGYITTDVLREILK---ELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~-~~-~g~i~~~el~~~l~---~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||. ++ +|+|+..||+.++. .+|.+++++++.+++...|.+++|+|+|.||+.++..+
T Consensus 15 ~F~~--y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 15 IFHK--YSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHH--HHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 7998 997 67 89999999999997 36999999999999999999999999999999998865
No 9
>KOG0037|consensus
Probab=99.30 E-value=1.6e-11 Score=82.37 Aligned_cols=90 Identities=19% Similarity=0.282 Sum_probs=78.3
Q ss_pred CCCCCCHHHHHHHHHHhchhh------------hcCCCchh-hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHH
Q psy13834 7 GNGYITTDVLREILKELDDKI------------SRHPVYQD-TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDM 73 (104)
Q Consensus 7 ~~~~~~~~~~~~l~~~~d~~~------------~~~~~~~~-~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~ 73 (104)
-...++.+.++.|+..+|.+. ...++.+. +|+. ||.|++|.|+..||+.+|..+|..++.+-.+.
T Consensus 87 ~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~--~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~ 164 (221)
T KOG0037|consen 87 TWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRT--YDRDRSGTIDSSELRQALTQLGYRLSPQFYNL 164 (221)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHh--cccCCCCcccHHHHHHHHHHcCcCCCHHHHHH
Confidence 346788999999999999983 33333333 9999 99999999999999999999999999999999
Q ss_pred HHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 74 MIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 74 l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
++..++...+|.|.|++|+.++-.+
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHH
Confidence 9999998889999999999988765
No 10
>KOG0031|consensus
Probab=99.30 E-value=1.9e-11 Score=78.19 Aligned_cols=92 Identities=21% Similarity=0.332 Sum_probs=80.4
Q ss_pred CCCCCCCCHHHHHHHHHHhchh---------hhcCCCc---hh----hcccccccCCCCcceeHHHHHHHHHHhCCCCCH
Q psy13834 5 GAGNGYITTDVLREILKELDDK---------ISRHPVY---QD----TYRVTKSTKIGNGYITTDVLREILKELDDKISA 68 (104)
Q Consensus 5 ~~~~~~~~~~~~~~l~~~~d~~---------~~~~~~~---~~----~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~ 68 (104)
.++|..++++++..|+++.... +.+++.. ++ +|+. ||++++|.|..+.|+++|...|..+++
T Consensus 59 aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~--FD~~~~G~I~~d~lre~Ltt~gDr~~~ 136 (171)
T KOG0031|consen 59 ASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKT--FDDEGSGKIDEDYLRELLTTMGDRFTD 136 (171)
T ss_pred HHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHh--cCccCCCccCHHHHHHHHHHhcccCCH
Confidence 4688889999999999988765 3333322 11 9999 999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 69 DDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 69 ~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
++++.|+..+..+..|.|+|..|+.++..-
T Consensus 137 eEV~~m~r~~p~d~~G~~dy~~~~~~ithG 166 (171)
T KOG0031|consen 137 EEVDEMYREAPIDKKGNFDYKAFTYIITHG 166 (171)
T ss_pred HHHHHHHHhCCcccCCceeHHHHHHHHHcc
Confidence 999999999999999999999999999854
No 11
>KOG0030|consensus
Probab=99.30 E-value=3.5e-12 Score=80.25 Aligned_cols=90 Identities=22% Similarity=0.385 Sum_probs=73.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhchh--------------hhcCCCch-------h---hcccccccCCCCcceeHHHHHHHH
Q psy13834 4 PGAGNGYITTDVLREILKELDDK--------------ISRHPVYQ-------D---TYRVTKSTKIGNGYITTDVLREIL 59 (104)
Q Consensus 4 ~~~~~~~~~~~~~~~l~~~~d~~--------------~~~~~~~~-------~---~f~~~~~D~~~~g~i~~~el~~~l 59 (104)
++++|.+||..++.+.+.....+ +...+..+ + .+++ ||++++|.|...+|+.+|
T Consensus 37 lRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~edfvegLrv--FDkeg~G~i~~aeLRhvL 114 (152)
T KOG0030|consen 37 LRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYEDFVEGLRV--FDKEGNGTIMGAELRHVL 114 (152)
T ss_pred HHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHHHHHHHHh--hcccCCcceeHHHHHHHH
Confidence 46789999999999888766554 11111111 1 7899 999999999999999999
Q ss_pred HHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 60 KELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 60 ~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
..+|..++++|++++++-. .|.+|-|+|+.|+..+.
T Consensus 115 ttlGekl~eeEVe~Llag~-eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 115 TTLGEKLTEEEVEELLAGQ-EDSNGCINYEAFVKHIM 150 (152)
T ss_pred HHHHhhccHHHHHHHHccc-cccCCcCcHHHHHHHHh
Confidence 9999999999999998876 47789999999998765
No 12
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.25 E-value=2.5e-11 Score=72.28 Aligned_cols=61 Identities=21% Similarity=0.376 Sum_probs=53.9
Q ss_pred hccccccc-CCCCc-ceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKST-KIGNG-YITTDVLREILKE-L----DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D-~~~~g-~i~~~el~~~l~~-~----g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. || .+++| .|+..||+.++.. + +...+..+|.+++..+|.+++|.|+|.||+.++..+
T Consensus 15 ~F~~--~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 15 IFHN--YSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHH--HHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 8999 99 78998 5999999999976 3 334577899999999999999999999999998865
No 13
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.24 E-value=2.8e-11 Score=72.06 Aligned_cols=61 Identities=16% Similarity=0.376 Sum_probs=55.5
Q ss_pred hcccccccC-CC-CcceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTK-IG-NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~-~~-~g~i~~~el~~~l~~-----~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||. ++ +|.|+..+|+.+++. +|..++.+++..++..++.+++|.|+|.+|+.++...
T Consensus 13 ~F~~--~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 13 TFHR--YAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHH--HhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 8999 997 87 699999999999986 5678899999999999999999999999999988754
No 14
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.22 E-value=5.4e-11 Score=65.94 Aligned_cols=59 Identities=20% Similarity=0.314 Sum_probs=54.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.. +|.+++|.|+..++..++..+| ++.+++.+++..++.+++|.|+|.+|+.++...
T Consensus 4 ~F~~--~D~~~~G~i~~~el~~~l~~~g--~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 4 IFRS--LDPDGDGLISGDEARPFLGKSG--LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHH--hCCCCCCcCcHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 7898 9999999999999999999987 488899999999999999999999999988754
No 15
>PTZ00184 calmodulin; Provisional
Probab=99.22 E-value=6.8e-11 Score=74.43 Aligned_cols=89 Identities=25% Similarity=0.543 Sum_probs=72.1
Q ss_pred CCCCCCHHHHHHHHHHhchh-------------hhcCCC---c----hhhcccccccCCCCcceeHHHHHHHHHHhCCCC
Q psy13834 7 GNGYITTDVLREILKELDDK-------------ISRHPV---Y----QDTYRVTKSTKIGNGYITTDVLREILKELDDKI 66 (104)
Q Consensus 7 ~~~~~~~~~~~~l~~~~d~~-------------~~~~~~---~----~~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~ 66 (104)
+|..++.+.+..+++.++.+ +...+. . ..+|.. ||.+++|.|+..++..++..+|..+
T Consensus 40 ~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~--~D~~~~g~i~~~e~~~~l~~~~~~~ 117 (149)
T PTZ00184 40 LGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKV--FDRDGNGFISAAELRHVMTNLGEKL 117 (149)
T ss_pred hCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHh--hCCCCCCeEeHHHHHHHHHHHCCCC
Confidence 35566777788888877665 111111 0 119999 9999999999999999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 67 SADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 67 s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+.+++..++..++.+++|.|+|+||+.++..
T Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 118 TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999999999998763
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.21 E-value=5.3e-11 Score=70.58 Aligned_cols=61 Identities=28% Similarity=0.553 Sum_probs=54.9
Q ss_pred hccccccc-CCCCc-ceeHHHHHHHHHH-hCC----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKST-KIGNG-YITTDVLREILKE-LDD----KISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D-~~~~g-~i~~~el~~~l~~-~g~----~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. || .+++| .|+..+|+.+++. +|. .++.+++.+++..+|.+++|.|+|.+|+.++..+
T Consensus 14 ~F~~--fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 14 VFHA--HSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHH--HhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 8999 97 99999 5999999999985 543 5688999999999999999999999999998865
No 17
>PTZ00183 centrin; Provisional
Probab=99.19 E-value=1.2e-10 Score=74.24 Aligned_cols=89 Identities=19% Similarity=0.355 Sum_probs=72.7
Q ss_pred CCCCCCHHHHHHHHHHhchh-------------hhc----CCCch---hhcccccccCCCCcceeHHHHHHHHHHhCCCC
Q psy13834 7 GNGYITTDVLREILKELDDK-------------ISR----HPVYQ---DTYRVTKSTKIGNGYITTDVLREILKELDDKI 66 (104)
Q Consensus 7 ~~~~~~~~~~~~l~~~~d~~-------------~~~----~~~~~---~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~ 66 (104)
+|..++.+++..+++.+|.+ +.. ..... .+|+. +|.+++|.|+..+|..++..+|..+
T Consensus 46 ~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~--~D~~~~G~i~~~e~~~~l~~~~~~l 123 (158)
T PTZ00183 46 LGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEILKAFRL--FDDDKTGKISLKNLKRVAKELGETI 123 (158)
T ss_pred hCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHHHHHHHH--hCCCCCCcCcHHHHHHHHHHhCCCC
Confidence 45566777788888777654 111 01111 18999 9999999999999999999999999
Q ss_pred CHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 67 SADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 67 s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+..++..++..++.+++|.|+|++|+.++..
T Consensus 124 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 154 (158)
T PTZ00183 124 TDEELQEMIDEADRNGDGEISEEEFYRIMKK 154 (158)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 9999999999999999999999999999875
No 18
>KOG0027|consensus
Probab=99.18 E-value=1.1e-10 Score=74.97 Aligned_cols=62 Identities=31% Similarity=0.545 Sum_probs=59.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+|+. ||.+++|+|+..+|..+++.+|.+++..++..++...+.+++|.|++.+|+.++....
T Consensus 13 ~F~~--fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 13 AFQL--FDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHH--HCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhh
Confidence 8999 9999999999999999999999999999999999999999999999999999998663
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.15 E-value=7.6e-11 Score=76.34 Aligned_cols=61 Identities=25% Similarity=0.417 Sum_probs=58.7
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+|+. +|++++|.|+..+|..+++.+|.+++.+++.+|+..++. +++.|+|.+|+.+|....
T Consensus 25 aF~l--~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 25 AFQL--FDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred HHHH--hCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 9999 999999999999999999999999999999999999999 899999999999998764
No 20
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.14 E-value=2.1e-10 Score=68.50 Aligned_cols=59 Identities=20% Similarity=0.254 Sum_probs=54.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.. +|.+++|.|+..++..+++.+| ++.+++.+++..++.+.+|.|+|++|+.++...
T Consensus 15 ~F~~--~D~d~~G~Is~~el~~~l~~~~--~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 15 IFRS--LDKNQDGTVTGAQAKPILLKSG--LPQTLLAKIWNLADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHH--hCCCCCCeEeHHHHHHHHHHcC--CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHH
Confidence 8999 9999999999999999999976 788999999999999999999999999988754
No 21
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=99.12 E-value=3.6e-10 Score=60.56 Aligned_cols=58 Identities=36% Similarity=0.688 Sum_probs=55.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
+|.. +|.+++|.|+..++..+++.++...+.+.+..++..++.+++|.|+|++|+.++
T Consensus 5 ~f~~--~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 5 AFRL--FDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHH--hCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 7888 999999999999999999999999999999999999999999999999999865
No 22
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.11 E-value=2.1e-10 Score=67.31 Aligned_cols=61 Identities=20% Similarity=0.354 Sum_probs=55.0
Q ss_pred hcccccccC--CCCcceeHHHHHHHHHH-hCCCC----CHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTK--IGNGYITTDVLREILKE-LDDKI----SADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~--~~~g~i~~~el~~~l~~-~g~~~----s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||. +++|.|+..+|..+++. +|.++ +.+++..++..++.+++|.|+|++|+.++...
T Consensus 13 ~F~~--~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 13 VFHK--YSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHH--HhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 8999 999 89999999999999986 56444 58999999999999999999999999998865
No 23
>PTZ00183 centrin; Provisional
Probab=99.00 E-value=7.5e-09 Score=65.85 Aligned_cols=60 Identities=25% Similarity=0.468 Sum_probs=42.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.. +|.+++|.|+..+|..++..+|..++.+++..++..++.+++|.|+|.+|+..+..
T Consensus 22 ~F~~--~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 22 AFDL--FDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred HHHH--hCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 5666 77777777777777777777766666666777777777777777777777766554
No 24
>PF14658 EF-hand_9: EF-hand domain
Probab=98.99 E-value=4.5e-09 Score=58.59 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=57.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCC-CceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDD-KISADDLDMMIAEIDSDGS-GTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~-~~s~~~~~~l~~~~d~~~~-g~I~~~eF~~~l~~ 97 (104)
+|.. ||.++.|.|....+...|+.++. .+++.+++.+.+++|.++. |.|+++.|+.+|..
T Consensus 3 ~F~~--fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDA--FDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhh--cCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 7999 99999999999999999999988 9999999999999999887 99999999999874
No 25
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.98 E-value=2.2e-09 Score=63.52 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=52.9
Q ss_pred hccccccc-CCCCc-ceeHHHHHHHHHHh-----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 36 TYRVTKST-KIGNG-YITTDVLREILKEL-----DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 36 ~f~~~~~D-~~~~g-~i~~~el~~~l~~~-----g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+|+. |. .+++| .|+..||+.++... +...++.++++++..+|.|++|.|+|+||+.++..++
T Consensus 14 ~F~~--y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 14 VFQK--YAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred HHHH--HhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHHH
Confidence 6776 64 66766 99999999999975 3456778999999999999999999999999988653
No 26
>KOG0034|consensus
Probab=98.97 E-value=2.6e-09 Score=70.99 Aligned_cols=61 Identities=26% Similarity=0.541 Sum_probs=52.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh-CCCCC--HHHH----HHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL-DDKIS--ADDL----DMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~-g~~~s--~~~~----~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|++ ||.+++|+|+++++.+++..+ +.+.+ ++.+ +.++.++|.+++|+|+|+||++.+.+.
T Consensus 109 aF~v--YD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 109 AFRV--YDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHH--hcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 9999 999999999999999999975 44455 5544 456899999999999999999998753
No 27
>KOG0036|consensus
Probab=98.96 E-value=1.1e-09 Score=79.48 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=78.9
Q ss_pred CCCCCCCC-CCHHHHHHHHHHhchh---------hhcCCCchh-----hcccccccCCCCcceeHHHHHHHHHHhCCCCC
Q psy13834 3 GPGAGNGY-ITTDVLREILKELDDK---------ISRHPVYQD-----TYRVTKSTKIGNGYITTDVLREILKELDDKIS 67 (104)
Q Consensus 3 ~~~~~~~~-~~~~~~~~l~~~~d~~---------~~~~~~~~~-----~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s 67 (104)
|..++..+ +..+..+.+++..|.+ +.+++...+ .|+. .|.+++|.|+..|+...++.+|.+++
T Consensus 39 ~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~E~~l~~~F~~--iD~~hdG~i~~~Ei~~~l~~~gi~l~ 116 (463)
T KOG0036|consen 39 GLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNKELELYRIFQS--IDLEHDGKIDPNEIWRYLKDLGIQLS 116 (463)
T ss_pred HHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHhHHHHHHHHhh--hccccCCccCHHHHHHHHHHhCCccC
Confidence 44455544 6667677788887776 444444433 8999 99999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCCC
Q psy13834 68 ADDLDMMIAEIDSDGSGTVDFDVIQRKILILAPE 101 (104)
Q Consensus 68 ~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~~ 101 (104)
++++++++..+|+++++.|+|+||..++. ++|+
T Consensus 117 de~~~k~~e~~d~~g~~~I~~~e~rd~~l-l~p~ 149 (463)
T KOG0036|consen 117 DEKAAKFFEHMDKDGKATIDLEEWRDHLL-LYPE 149 (463)
T ss_pred HHHHHHHHHHhccCCCeeeccHHHHhhhh-cCCh
Confidence 99999999999999999999999999888 4443
No 28
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.93 E-value=2.3e-09 Score=63.18 Aligned_cols=61 Identities=10% Similarity=0.311 Sum_probs=53.5
Q ss_pred hcccccccCC--CCcceeHHHHHHHHH-HhCCCCC----HHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKI--GNGYITTDVLREILK-ELDDKIS----ADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~--~~g~i~~~el~~~l~-~~g~~~s----~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|+. |+.. .+|.|+..||+.++. .++..++ +++++.++..+|.+++|.|+|++|+.++...
T Consensus 13 ~f~~--y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 13 VFHQ--YSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHH--HhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 6888 8854 479999999999997 5666666 8999999999999999999999999998865
No 29
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=5.6e-09 Score=64.59 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=50.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.. +|.|++|.|+..||..+. .......+..++..+|.|++|.|+++||+.++..
T Consensus 53 ~F~~--lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 53 MFNQ--LDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHH--HCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 9999 999999999999999876 2345677899999999999999999999999943
No 30
>PTZ00184 calmodulin; Provisional
Probab=98.88 E-value=8.2e-09 Score=64.84 Aligned_cols=61 Identities=31% Similarity=0.512 Sum_probs=51.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|.. +|.+++|.|+..+|..++..++..++.+++..++..++.+++|.|+|++|+.++...
T Consensus 16 ~F~~--~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~ 76 (149)
T PTZ00184 16 AFSL--FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARK 76 (149)
T ss_pred HHHH--HcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHh
Confidence 7888 888888888888888888888887888888888888888888888888888877654
No 31
>KOG0031|consensus
Probab=98.86 E-value=6.9e-09 Score=66.54 Aligned_cols=76 Identities=21% Similarity=0.340 Sum_probs=64.1
Q ss_pred HHHHhchhhhcCCCchhhcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 19 ILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 19 l~~~~d~~~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+++.++......++. +|.. .|.|++|+|+.++|+.++.++|...++++++.|+.+.. |-|+|.-|+.++...
T Consensus 22 vFamf~q~QIqEfKE--AF~~--mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~----gPINft~FLTmfGek 93 (171)
T KOG0031|consen 22 VFAMFDQSQIQEFKE--AFNL--MDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAP----GPINFTVFLTMFGEK 93 (171)
T ss_pred HHHHhhHHHHHHHHH--HHHH--HhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCC----CCeeHHHHHHHHHHH
Confidence 556666666666666 9999 99999999999999999999999999999999998874 569999999988766
Q ss_pred CCCC
Q psy13834 99 APET 102 (104)
Q Consensus 99 ~~~~ 102 (104)
...|
T Consensus 94 L~gt 97 (171)
T KOG0031|consen 94 LNGT 97 (171)
T ss_pred hcCC
Confidence 4433
No 32
>KOG0028|consensus
Probab=98.85 E-value=6.6e-09 Score=66.95 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=57.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.. ||++++|+|+..+|+.+++.+|+.+..+++.+++..+++++.|.|+|++|+..+...
T Consensus 38 ~f~l--fd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k 98 (172)
T KOG0028|consen 38 AFEL--FDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVK 98 (172)
T ss_pred HHHh--hccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHH
Confidence 9999 999999999999999999999999999999999999999999999999999987754
No 33
>KOG0038|consensus
Probab=98.83 E-value=4.2e-08 Score=62.68 Aligned_cols=86 Identities=22% Similarity=0.408 Sum_probs=66.8
Q ss_pred CCCHHHHHHHHHHhchhhhcCCCchhhcccccccCCCCcceeHHHHHHHHHHhC-CCCCHHHHH----HHHHhhCCCCCC
Q psy13834 10 YITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELD-DKISADDLD----MMIAEIDSDGSG 84 (104)
Q Consensus 10 ~~~~~~~~~l~~~~d~~~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g-~~~s~~~~~----~l~~~~d~~~~g 84 (104)
+++-+..-+|++.+....-..++...+|+. ||-|++++|...+|.+.+..+. ..+|++++. +++.+.|.|++|
T Consensus 87 nlsfddFlDmfSV~sE~APrdlK~~YAFkI--YDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDg 164 (189)
T KOG0038|consen 87 NLSFDDFLDMFSVFSEMAPRDLKAKYAFKI--YDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDG 164 (189)
T ss_pred cccHHHHHHHHHHHHhhChHHhhhhheeEE--eecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCC
Confidence 445555555555554443333444449999 9999999999999999999885 478888764 578899999999
Q ss_pred ceeHHHHHHHHHh
Q psy13834 85 TVDFDVIQRKILI 97 (104)
Q Consensus 85 ~I~~~eF~~~l~~ 97 (104)
+++|.+|.+++.+
T Consensus 165 kl~~~eFe~~i~r 177 (189)
T KOG0038|consen 165 KLSFAEFEHVILR 177 (189)
T ss_pred cccHHHHHHHHHh
Confidence 9999999999985
No 34
>KOG0041|consensus
Probab=98.73 E-value=1.8e-08 Score=67.25 Aligned_cols=61 Identities=20% Similarity=0.280 Sum_probs=57.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||.+.+|+|+..||+.+|.++|-+-+.--+..|+.+.|.|.+|+|+|-||+-++...
T Consensus 104 ~Fk~--yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 104 MFKQ--YDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHH--hcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 9999 999999999999999999999999988889999999999999999999999888754
No 35
>KOG0044|consensus
Probab=98.73 E-value=6.3e-08 Score=64.62 Aligned_cols=67 Identities=15% Similarity=0.402 Sum_probs=53.4
Q ss_pred hhcCCCchhhcccccccCCCCcceeHHHHHHHHHHh----CC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 27 ISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKEL----DD-------KISADDLDMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 27 ~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~----g~-------~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
+.++++. +|+. ||.|++|+|+..|+..++... |. ....+-++++|+.+|.|++|.|+++||+..+
T Consensus 98 ~eekl~w--~F~l--yD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~ 173 (193)
T KOG0044|consen 98 LEEKLKW--AFRL--YDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGC 173 (193)
T ss_pred HHHHhhh--hhee--ecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHh
Confidence 4444555 9999 999999999999998888864 21 1124557889999999999999999999876
Q ss_pred Hh
Q psy13834 96 LI 97 (104)
Q Consensus 96 ~~ 97 (104)
..
T Consensus 174 ~~ 175 (193)
T KOG0044|consen 174 KA 175 (193)
T ss_pred hh
Confidence 53
No 36
>KOG0044|consensus
Probab=98.58 E-value=1.2e-07 Score=63.30 Aligned_cols=61 Identities=16% Similarity=0.160 Sum_probs=55.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. ||.|++|.|+..||..++.....+..++-+...|..+|.|++|.|+++|++.++...
T Consensus 69 vF~~--fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 69 VFRT--FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred HHHH--hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 9999 999999999999999999877777777788889999999999999999999988755
No 37
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.56 E-value=1.6e-07 Score=44.30 Aligned_cols=28 Identities=29% Similarity=0.574 Sum_probs=21.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
|+.++|..+|.|++|.|+++||+.++..
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4667788888888888888888877764
No 38
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=98.52 E-value=7.7e-07 Score=47.11 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=41.5
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
++..|++.+++.+.+.+++.....+|+++|.+++|++.-+||..++..+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 6789999999999999999999999999999999999999999998765
No 39
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.49 E-value=6.6e-07 Score=53.01 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=50.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH-h----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE-L----DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~-~----g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. |- ...+.++..||+.++++ + ...-+.+.+++++...|.|+||.|+|.||+.++..+
T Consensus 13 ~Fhk--Ya-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 13 TFHK--FA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHH--Hc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 7888 87 34579999999999984 2 344567889999999999999999999999988754
No 40
>KOG0030|consensus
Probab=98.48 E-value=1.4e-07 Score=59.63 Aligned_cols=63 Identities=13% Similarity=0.270 Sum_probs=57.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC--CCCceeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSD--GSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~--~~g~I~~~eF~~~l~~~~~ 100 (104)
+|.. ||..++|.|+..+.-.+++.+|.++++.++.+.+..+.++ .-.+|+|++|+.++..++.
T Consensus 16 ~F~l--fD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vak 80 (152)
T KOG0030|consen 16 AFLL--FDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAK 80 (152)
T ss_pred HHHH--HhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHh
Confidence 9999 9999999999999999999999999999999999998877 4568999999999987643
No 41
>PLN02964 phosphatidylserine decarboxylase
Probab=98.43 E-value=7.1e-07 Score=68.77 Aligned_cols=60 Identities=13% Similarity=0.324 Sum_probs=56.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.. +|.+++|.|+.+||..++..++...+++++..+|..+|.|++|.|+++||..++..
T Consensus 184 mf~~--~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 184 ILAI--VDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred HHHH--hCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 8998 99999999999999999999988888999999999999999999999999999876
No 42
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.26 E-value=7e-06 Score=49.84 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=49.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.|.. .|+ ++|.|+..+.+.++...+ ++.+.+.+++...|.+++|.++++||+-.+.
T Consensus 15 ~F~~--l~~-~~g~isg~~a~~~f~~S~--L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 15 IFQS--LDP-QDGKISGDQAREFFMKSG--LPRDVLAQIWNLADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp HHHC--TSS-STTEEEHHHHHHHHHHTT--SSHHHHHHHHHHH-SSSSSEEEHHHHHHHHH
T ss_pred HHHh--cCC-CCCeEeHHHHHHHHHHcC--CCHHHHHHHHhhhcCCCCCcCCHHHHHHHHH
Confidence 7888 885 579999999999999987 7788999999999999999999999998665
No 43
>KOG0377|consensus
Probab=98.23 E-value=3.3e-06 Score=62.48 Aligned_cols=61 Identities=20% Similarity=0.348 Sum_probs=56.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh----CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL----DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~----g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. .|.|++|.|+.+||+.+++-+ ...++++++.++-..+|.++||.|++.||++.+.-.
T Consensus 552 iF~~--iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAFrlv 616 (631)
T KOG0377|consen 552 IFNI--IDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAFRLV 616 (631)
T ss_pred HHHH--hccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHHhhh
Confidence 9999 999999999999999999865 367899999999999999999999999999988744
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.17 E-value=3.7e-06 Score=64.93 Aligned_cols=57 Identities=12% Similarity=0.245 Sum_probs=52.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhC-CCCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELD-DKISADD---LDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g-~~~s~~~---~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.. +|+|++|.+ +..+++.+| ..+++++ +..+|..+|.+++|.|+|+||+.++...
T Consensus 148 aF~l--fD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l 208 (644)
T PLN02964 148 SFDL--LDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF 208 (644)
T ss_pred HHHH--HCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh
Confidence 8999 999999997 899999999 5888887 8999999999999999999999998865
No 45
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.16 E-value=1.8e-06 Score=40.68 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=23.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL 62 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~ 62 (104)
+|+. ||+|++|+|+.+||..+++++
T Consensus 5 ~F~~--~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 5 AFRE--FDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHH--HSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHH--HCCCCCCcCCHHHHHHHHHhC
Confidence 7999 999999999999999999864
No 46
>KOG0037|consensus
Probab=98.04 E-value=1.7e-05 Score=53.58 Aligned_cols=49 Identities=18% Similarity=0.291 Sum_probs=25.0
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
||.+.+|.|...||..+++.+ ..|.++|..+|+|++|+|+..|+...+.
T Consensus 103 fd~~~~G~i~f~EF~~Lw~~i------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 103 FDRDNSGTIGFKEFKALWKYI------NQWRNVFRTYDRDRSGTIDSSELRQALT 151 (221)
T ss_pred hcCCCCCccCHHHHHHHHHHH------HHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 455555555555555555443 2355555555555555555555555444
No 47
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.03 E-value=1e-05 Score=59.38 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=42.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|+. ||.+++|.|+.+||.. .+.+|..+|.|++|.|+++||...+..
T Consensus 339 aF~~--~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 339 IFRL--YDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred HHHH--hCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 9999 9999999999999841 578999999999999999999998874
No 48
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.02 E-value=4.8e-06 Score=39.56 Aligned_cols=26 Identities=35% Similarity=0.685 Sum_probs=22.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHH-HhC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILK-ELD 63 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~-~~g 63 (104)
+|+. ||.+++|+|+.+||+.+++ ++|
T Consensus 5 ~F~~--~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 5 AFKM--FDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHH--H-TTSSSEEEHHHHHHHHHHHTT
T ss_pred HHHH--HCCCCCCcCcHHHHHHHHHHhcC
Confidence 8999 9999999999999999999 565
No 49
>KOG0036|consensus
Probab=97.91 E-value=3.6e-05 Score=56.46 Aligned_cols=61 Identities=20% Similarity=0.347 Sum_probs=54.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCC-CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDK-ISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~-~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|+. +|.+++|.++..++.+.+..+..+ ...+....++..+|.+.+|+++|.||.+++...
T Consensus 19 lf~~--lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~~ 80 (463)
T KOG0036|consen 19 LFKE--LDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDNK 80 (463)
T ss_pred HHHH--hccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHHh
Confidence 8998 999999999999999999998876 666667788999999999999999999988754
No 50
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.78 E-value=6e-05 Score=34.13 Aligned_cols=23 Identities=30% Similarity=0.619 Sum_probs=13.6
Q ss_pred HHHHHhhCCCCCCceeHHHHHHH
Q psy13834 72 DMMIAEIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 72 ~~l~~~~d~~~~g~I~~~eF~~~ 94 (104)
.++|..+|.|++|.|+++||..+
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHH
Confidence 34556666666666666666553
No 51
>KOG0046|consensus
Probab=97.74 E-value=0.00017 Score=54.41 Aligned_cols=62 Identities=19% Similarity=0.363 Sum_probs=54.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCC---CHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKI---SADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~---s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
.|.. .| +++|+|+..++..++...+... ..+++..++...+.+.+|.|+|++|+..+..+.+
T Consensus 24 kF~~--~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l~s 88 (627)
T KOG0046|consen 24 KFNK--LD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNLKS 88 (627)
T ss_pred HHHh--hc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhhhh
Confidence 6877 89 9999999999999999887543 4788999999999999999999999998876644
No 52
>KOG4065|consensus
Probab=97.65 E-value=0.00022 Score=44.10 Aligned_cols=57 Identities=16% Similarity=0.291 Sum_probs=45.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh------CC----CCCHHHHHHHHHh----hCCCCCCceeHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL------DD----KISADDLDMMIAE----IDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~------g~----~~s~~~~~~l~~~----~d~~~~g~I~~~eF~~~ 94 (104)
.|++ .|.|++|+|+--|+.+++... |. -.|+.++..++.. -|.+++|.|+|.||+..
T Consensus 72 YF~M--HDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSM--HDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhh--hccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 7888 899999999999999999853 22 2456777776654 46789999999999864
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.63 E-value=0.00014 Score=34.39 Aligned_cols=27 Identities=26% Similarity=0.484 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
++..+|..+|.+++|.|+++||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 467899999999999999999999987
No 54
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.56 E-value=1.7e-05 Score=48.81 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=40.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~ 94 (104)
.|.. +|.|++|.|+..|+..+...+ .....-+..++..+|.|+||.|++.|+...
T Consensus 59 ~F~~--LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 59 KFCQ--LDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWCNC 113 (113)
T ss_dssp HHHH--H--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHHHH
T ss_pred hHhh--hcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHccC
Confidence 7999 999999999999998776655 344456889999999999999999999763
No 55
>KOG0040|consensus
Probab=97.36 E-value=0.00042 Score=57.79 Aligned_cols=61 Identities=13% Similarity=0.276 Sum_probs=55.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCC-C-HH-----HHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKI-S-AD-----DLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~-s-~~-----~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|++ ||.+.+|.++..+|..+++.+|+.+ + ++ ++.+++...|++.+|.|+..+|+.+|-..
T Consensus 2258 ~fkh--FDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2258 MFKH--FDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHH--hchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHHHHHhc
Confidence 9999 9999999999999999999999866 2 22 68999999999999999999999998754
No 56
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.36 E-value=0.00016 Score=32.75 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=20.0
Q ss_pred hcccccccCCCCcceeHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREIL 59 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l 59 (104)
+|+. +|.|++|.|+..|+.+++
T Consensus 4 ~F~~--~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 4 AFQQ--FDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHH--HTTTSSSEEEHHHHHHHH
T ss_pred HHHH--HcCCCCCcCCHHHHHHHC
Confidence 7888 999999999999998864
No 57
>KOG0034|consensus
Probab=97.27 E-value=0.00073 Score=45.07 Aligned_cols=59 Identities=29% Similarity=0.558 Sum_probs=32.6
Q ss_pred hcccccccCC-CCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCc-eeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKI-GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGT-VDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~-~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~-I~~~eF~~~l~~~~~ 100 (104)
.|.. +|.+ +.|+|+.++|..+.. +..++- ..+++..++.+++|. |+|.+|++.+....|
T Consensus 38 rF~k--l~~~~~~g~lt~eef~~i~~-~~~Np~---~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~ 98 (187)
T KOG0034|consen 38 RFKK--LDRNNGDGYLTKEEFLSIPE-LALNPL---ADRIIDRFDTDGNGDPVDFEEFVRLLSVFSP 98 (187)
T ss_pred HHHH--hccccccCccCHHHHHHHHH-HhcCcH---HHHHHHHHhccCCCCccCHHHHHHHHhhhcC
Confidence 5555 6666 666666666666662 222221 345555555555555 666666666655444
No 58
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.25 E-value=0.00057 Score=30.20 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=19.6
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 71 LDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 71 ~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+..++..++.+++|.|++.+|..++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 456777777777777888887777653
No 59
>KOG4223|consensus
Probab=97.15 E-value=0.00026 Score=50.48 Aligned_cols=61 Identities=15% Similarity=0.240 Sum_probs=53.2
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|.. +|+|++|+++..|++.++.--+......+...|+.+.|.|++|+++++|.+....-.
T Consensus 246 F~~~--~DknkDG~L~~dEl~~WI~P~~~d~A~~EA~hL~~eaD~dkD~kLs~eEIl~~~d~F 306 (325)
T KOG4223|consen 246 FFEF--RDKNKDGKLDGDELLDWILPSEQDHAKAEARHLLHEADEDKDGKLSKEEILEHYDVF 306 (325)
T ss_pred HHHH--hhcCCCCccCHHHHhcccCCCCccHHHHHHHHHhhhhccCccccccHHHHhhCccee
Confidence 5666 899999999999999999877777778889999999999999999999998765443
No 60
>KOG4223|consensus
Probab=97.13 E-value=0.0007 Score=48.32 Aligned_cols=61 Identities=13% Similarity=0.337 Sum_probs=47.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELD-DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g-~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|++ .|.|++|.++.+||..++---- ..+..=.+..-+..+|.|++|.|+++||+.-+..-
T Consensus 168 rFk~--AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~ 229 (325)
T KOG4223|consen 168 RFKA--ADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSH 229 (325)
T ss_pred HHhh--cccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhc
Confidence 8999 9999999999999998875322 12222335566889999999999999999977654
No 61
>KOG1955|consensus
Probab=96.55 E-value=0.0031 Score=47.75 Aligned_cols=58 Identities=12% Similarity=0.288 Sum_probs=52.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.|+- ..+|..|+|+..--+.++.+.. +...|+..||..+|.+.||.+++.|||..+.-
T Consensus 236 QFrt--vQpDp~gfisGsaAknFFtKSk--lpi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 236 QFRT--VQPDPHGFISGSAAKNFFTKSK--LPIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred hhhc--ccCCcccccccHHHHhhhhhcc--CchHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 8988 8999999999999999999876 55578999999999999999999999998763
No 62
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=96.45 E-value=0.026 Score=36.43 Aligned_cols=57 Identities=14% Similarity=0.322 Sum_probs=46.2
Q ss_pred ccCCCCcceeHHHHHHHHHHhCC---CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 42 STKIGNGYITTDVLREILKELDD---KISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~---~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
|...+...++...|.++++.+++ .++...++-+|..+...+..+|+|++|+.+|..+
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~l 70 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAEL 70 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHH
Confidence 55666778999999999998764 6888899999999877777789999999998765
No 63
>KOG2243|consensus
Probab=96.43 E-value=0.012 Score=49.62 Aligned_cols=59 Identities=12% Similarity=0.317 Sum_probs=52.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.|+- ||+||.|.|+..+|.++|..- ...++.+++-++.....|.+...+|++|+.-+..
T Consensus 4062 tfke--ydpdgkgiiskkdf~kame~~-k~ytqse~dfllscae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKE--YDPDGKGIISKKDFHKAMEGH-KHYTQSEIDFLLSCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchh--cCCCCCccccHHHHHHHHhcc-ccchhHHHHHHHHhhccCccccccHHHHHHHhcC
Confidence 8999 999999999999999999863 4677888998999988999999999999987653
No 64
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=96.41 E-value=0.0081 Score=31.48 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhchhhhcCCCchh---hcccccccCCCCcceeHHHHHHHHHH
Q psy13834 11 ITTDVLREILKELDDKISRHPVYQD---TYRVTKSTKIGNGYITTDVLREILKE 61 (104)
Q Consensus 11 ~~~~~~~~l~~~~d~~~~~~~~~~~---~f~~~~~D~~~~g~i~~~el~~~l~~ 61 (104)
++.++++.++..+.... +...+ +|.. +|.+++|.|+..||..++..
T Consensus 5 i~~~~~~~~l~~~g~~~---~s~~e~~~l~~~--~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 5 ITREEFRRALSKLGIKD---LSEEEVDRLFRE--FDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp EEHHHHHHHHHHTTSSS---SCHHHHHHHHHH--HTTSSSSSEEHHHHHHHHHH
T ss_pred ECHHHHHHHHHHhCCCC---CCHHHHHHHHHh--cccCCCCCCCHHHHHHHHHh
Confidence 45666666664331110 22222 8888 99999999999999998864
No 65
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=96.26 E-value=0.01 Score=32.26 Aligned_cols=29 Identities=24% Similarity=0.445 Sum_probs=26.5
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 71 LDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 71 ~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+.++|..+|.+++|.|+.+||..++....
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~ 30 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLG 30 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhc
Confidence 67899999999999999999999998764
No 66
>KOG2643|consensus
Probab=96.20 E-value=0.0081 Score=44.74 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=41.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH------hCC--------CCC-HHHHHH-HHHh-hCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE------LDD--------KIS-ADDLDM-MIAE-IDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~------~g~--------~~s-~~~~~~-l~~~-~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|++ ||.|++|.|+.+||..+..- +|. ..+ ..+++. +... +..++++++++++|+.++.++
T Consensus 238 AFKM--FD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 238 AFKM--FDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred eeee--eecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCccccHHHHHHHHHHH
Confidence 9999 99999999999999776642 121 111 112222 2222 356788899999999887754
No 67
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=96.15 E-value=0.013 Score=33.62 Aligned_cols=60 Identities=17% Similarity=0.420 Sum_probs=48.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhC-C-CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELD-D-KISADDLDMMIAEIDSD----GSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g-~-~~s~~~~~~l~~~~d~~----~~g~I~~~eF~~~l~~~ 98 (104)
+|.. |-. +.+.|+.++|.+.|..-. . .++.+++.+++..+..+ ..+.+++++|..+|...
T Consensus 5 if~~--ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 5 IFRK--YSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHH--HCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred HHHH--HhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 6777 755 789999999999998653 3 57899999999988654 47899999999999754
No 68
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.08 E-value=0.0063 Score=26.56 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE 61 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~ 61 (104)
+|.. +|.+++|.|+..+|..++..
T Consensus 5 ~f~~--~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 5 AFRL--FDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHH--HCCCCCCcEeHHHHHHHHHh
Confidence 7888 99999999999999998875
No 69
>KOG2643|consensus
Probab=95.82 E-value=0.0038 Score=46.43 Aligned_cols=52 Identities=13% Similarity=0.171 Sum_probs=45.6
Q ss_pred CcceeHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 47 NGYITTDVLREILKE-LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 47 ~g~i~~~el~~~l~~-~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.+-|+..+|+++... .|.++|+.-++-+|.-+|.|+||.++++||+.++.+.
T Consensus 402 g~~i~~~~f~raa~~vtGveLSdhVvdvvF~IFD~N~Dg~LS~~EFl~Vmk~R 454 (489)
T KOG2643|consen 402 GASIDEKTFQRAAKVVTGVELSDHVVDVVFTIFDENNDGTLSHKEFLAVMKRR 454 (489)
T ss_pred CCCCCHHHHHHHHHHhcCcccccceeeeEEEEEccCCCCcccHHHHHHHHHHH
Confidence 567888999888884 5888998888888999999999999999999999865
No 70
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=95.66 E-value=0.0065 Score=32.15 Aligned_cols=48 Identities=15% Similarity=0.299 Sum_probs=34.0
Q ss_pred CCHHHHHHHHHHhchhhhcC-CCchhhcccccccCCCCcceeHHHHHHHHHHh
Q psy13834 11 ITTDVLREILKELDDKISRH-PVYQDTYRVTKSTKIGNGYITTDVLREILKEL 62 (104)
Q Consensus 11 ~~~~~~~~l~~~~d~~~~~~-~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~ 62 (104)
++-.|++.+++.++.++... ... +|+. +|.+++|.+..+|+..+.+.+
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~--LFq~--~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQ--LFQE--CDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHH--HHHH--H-SSSSSEBEHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHH--HHHH--hcccCCCCccHHHHHHHHHHh
Confidence 35678888888887764322 222 8999 999999999999999888764
No 71
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=95.46 E-value=0.017 Score=34.00 Aligned_cols=51 Identities=14% Similarity=0.168 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHH-hchhhhc--CCCchhhcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 9 GYITTDVLREILKE-LDDKISR--HPVYQDTYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 9 ~~~~~~~~~~l~~~-~d~~~~~--~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
..++.++++.++.. +...+.. .+.. +++. .|.|++|.|+++||..++..+.
T Consensus 24 g~i~~~ELk~ll~~elg~~ls~~~~v~~--mi~~--~D~d~DG~I~F~EF~~l~~~l~ 77 (89)
T cd05022 24 ESLTASEFQELLTQQLPHLLKDVEGLEE--KMKN--LDVNQDSKLSFEEFWELIGELA 77 (89)
T ss_pred CeECHHHHHHHHHHHhhhhccCHHHHHH--HHHH--hCCCCCCCCcHHHHHHHHHHHH
Confidence 35777888888776 5332221 2333 8888 9999999999999999998763
No 72
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=95.45 E-value=0.034 Score=32.79 Aligned_cols=50 Identities=14% Similarity=0.150 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHH-hchhhhcC-----CCchhhcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 10 YITTDVLREILKE-LDDKISRH-----PVYQDTYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 10 ~~~~~~~~~l~~~-~d~~~~~~-----~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
.++.++++.++.. +...+... +.. +++. +|.|++|.|+..||..++..+.
T Consensus 28 ~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~--i~~e--lD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 28 KLSKGELKELLQRELTDFLSSQKDPMLVDK--IMND--LDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred EECHHHHHHHHHHHhHHhcccccCHHHHHH--HHHH--hCCCCCCCCCHHHHHHHHHHHH
Confidence 4788889888865 22111221 222 8888 9999999999999999998764
No 73
>KOG1029|consensus
Probab=95.36 E-value=0.019 Score=45.72 Aligned_cols=65 Identities=18% Similarity=0.316 Sum_probs=55.4
Q ss_pred hcCCCchhhcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 28 SRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 28 ~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
..+++....|+. +|+..+|+++...-+.+|-..+ ++...+..++..-|.|+||+++-+||+-.+.
T Consensus 192 ~~klKY~QlFNa--~DktrsG~Lsg~qaR~aL~qS~--Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 192 HNKLKYRQLFNA--LDKTRSGYLSGQQARSALGQSG--LPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred hhhhHHHHHhhh--cccccccccccHHHHHHHHhcC--CchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 344444459999 9999999999999999998877 6667899999999999999999999987654
No 74
>KOG4251|consensus
Probab=95.32 E-value=0.011 Score=41.32 Aligned_cols=59 Identities=17% Similarity=0.322 Sum_probs=44.2
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH-hCCCC--CHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE-LDDKI--SADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~-~g~~~--s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
+|+. -|.|.+|+|+..++++.+.. ....+ +.++-.-.|...|.+++|.|+|+||--.++
T Consensus 106 iFsK--vDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFl 167 (362)
T KOG4251|consen 106 IFSK--VDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFL 167 (362)
T ss_pred HHhh--cccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHH
Confidence 8998 99999999999999988874 21111 112223357788999999999999977654
No 75
>KOG0377|consensus
Probab=95.26 E-value=0.1 Score=39.32 Aligned_cols=61 Identities=16% Similarity=0.332 Sum_probs=48.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh-CCCCC----------------------------------------------H
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL-DDKIS----------------------------------------------A 68 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~-g~~~s----------------------------------------------~ 68 (104)
.|+. +|...+|.|+...-..+++.. |.++. .
T Consensus 469 eF~~--~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLYr~k 546 (631)
T KOG0377|consen 469 EFRK--YDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLYRNK 546 (631)
T ss_pred HHHh--cChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHHhch
Confidence 8999 999999999999999888863 33321 1
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 69 DDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 69 ~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
..++.+|.-+|.|.+|.|+.+||..++.-+
T Consensus 547 s~LetiF~~iD~D~SG~isldEF~~a~~l~ 576 (631)
T KOG0377|consen 547 SSLETIFNIIDADNSGEISLDEFRTAWKLL 576 (631)
T ss_pred hhHHHHHHHhccCCCCceeHHHHHHHHHHH
Confidence 124557889999999999999999987644
No 76
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.02 E-value=0.07 Score=31.31 Aligned_cols=53 Identities=4% Similarity=0.022 Sum_probs=37.2
Q ss_pred CCCCHHHHHHHHHHhchhhhc-CCCc---hhhcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 9 GYITTDVLREILKELDDKISR-HPVY---QDTYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~d~~~~~-~~~~---~~~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
..++.+|++.++...-.++.. .... .++++. +|.|++|.|+.+||..++..+.
T Consensus 26 ~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~--~D~d~DG~I~f~EF~~l~~~l~ 82 (89)
T cd05023 26 YQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKK--LDLNSDGQLDFQEFLNLIGGLA 82 (89)
T ss_pred CeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHH--cCCCCCCcCcHHHHHHHHHHHH
Confidence 368888888887764332221 1111 118888 9999999999999999987753
No 77
>KOG3866|consensus
Probab=94.90 E-value=0.2 Score=36.22 Aligned_cols=90 Identities=16% Similarity=0.218 Sum_probs=64.2
Q ss_pred CCCCCCHHHHHHHHHHhchhhhcCCCchhhcccccccCCCCcceeHHHHHHHHHH-h---CCCCC-HHHH----------
Q psy13834 7 GNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKE-L---DDKIS-ADDL---------- 71 (104)
Q Consensus 7 ~~~~~~~~~~~~l~~~~d~~~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~-~---g~~~s-~~~~---------- 71 (104)
++.+-|.+.++.++...|..-...+.....|.. .|.|++|+++-.+|..++.. + -.+.. ++++
T Consensus 220 vnhPGSkdQLkEVWEE~DgLdpn~fdPKTFF~L--HD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRM 297 (442)
T KOG3866|consen 220 VNHPGSKDQLKEVWEESDGLDPNQFDPKTFFAL--HDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRM 297 (442)
T ss_pred CCCCCcHHHHHHHHHHhcCCCcccCCcchheee--eccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence 456667888888888777664444444448898 99999999999999888763 2 11111 1222
Q ss_pred -HHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 72 -DMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 72 -~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+.++...|.+.+.-|+.+||++.-.+.
T Consensus 298 REHVMk~vDtNqDRlvtleEFL~~t~~k 325 (442)
T KOG3866|consen 298 REHVMKQVDTNQDRLVTLEEFLNDTDNK 325 (442)
T ss_pred HHHHHHhcccchhhhhhHHHHHhhhhhc
Confidence 235788899999999999999876544
No 78
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=94.80 E-value=0.06 Score=27.66 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.2
Q ss_pred HHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 71 LDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 71 ~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+..+|..++.+++|.|++.+|..++....
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~ 30 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLG 30 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhC
Confidence 56788999999999999999999988663
No 79
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=94.58 E-value=0.035 Score=34.27 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 66 ISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 66 ~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+++++++.++.++-.+..|++.|.+|+.-+...
T Consensus 4 LtDeQFdrLW~e~Pvn~~GrLkY~eFL~kfs~e 36 (118)
T PF08976_consen 4 LTDEQFDRLWNEMPVNAKGRLKYQEFLSKFSSE 36 (118)
T ss_dssp --HHHHHHHHTTS-B-TTS-EEHHHHHHHT---
T ss_pred ccHHHhhhhhhhCcCCccCCEeHHHHHHHcccc
Confidence 789999999999999999999999999988743
No 80
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=94.32 E-value=0.14 Score=29.95 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHhchhhhcCCCchh---hcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 9 GYITTDVLREILKELDDKISRHPVYQD---TYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~d~~~~~~~~~~~---~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
..++.++++.++...- .+...+...+ +++. .|.|++|.|+..+|..++..+.
T Consensus 27 g~Is~~EL~~~l~~~~-~lg~k~t~~ev~~m~~~--~D~d~dG~Idf~EFv~lm~~l~ 81 (88)
T cd05029 27 NTLSKKELKELIQKEL-TIGSKLQDAEIAKLMED--LDRNKDQEVNFQEYVTFLGALA 81 (88)
T ss_pred CEECHHHHHHHHHHHH-hcCCCCCHHHHHHHHHH--hcCCCCCCCcHHHHHHHHHHHH
Confidence 4678888888885310 0112222222 7888 9999999999999998887654
No 81
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=94.16 E-value=0.047 Score=32.03 Aligned_cols=56 Identities=7% Similarity=0.148 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHHH-hchhhhcCCCch---hhcccccccCCCCcceeHHHHHHHHHHhCCCC
Q psy13834 9 GYITTDVLREILKE-LDDKISRHPVYQ---DTYRVTKSTKIGNGYITTDVLREILKELDDKI 66 (104)
Q Consensus 9 ~~~~~~~~~~l~~~-~d~~~~~~~~~~---~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~ 66 (104)
..++.+++..++.. +...+....... .+++. +|.+++|.|+..+|..++..+++.+
T Consensus 25 G~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~--~D~~~dg~I~f~eF~~l~~~~~~~~ 84 (94)
T cd05031 25 NTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD--LDQNRDGKVNFEEFVSLVAGLSIAC 84 (94)
T ss_pred CeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH--hCCCCCCcCcHHHHHHHHHHHHHHH
Confidence 45777888877764 211111111111 17888 9999999999999999998776433
No 82
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=94.04 E-value=0.065 Score=31.22 Aligned_cols=51 Identities=6% Similarity=0.150 Sum_probs=37.1
Q ss_pred CCCCHHHHHHHHH-Hhchhhh-----cCCCchhhcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 9 GYITTDVLREILK-ELDDKIS-----RHPVYQDTYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 9 ~~~~~~~~~~l~~-~~d~~~~-----~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
..++.+++..++. .+...+. ..+.. +|+. +|.+++|.|+.++|..++..+.
T Consensus 25 ~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~--i~~~--~D~d~dG~I~f~eF~~~~~~~~ 81 (88)
T cd05030 25 DTLYKKEFKQLVEKELPNFLKKEKNQKAIDK--IFED--LDTNQDGQLSFEEFLVLVIKVG 81 (88)
T ss_pred ccCCHHHHHHHHHHHhhHhhccCCCHHHHHH--HHHH--cCCCCCCcCcHHHHHHHHHHHH
Confidence 4688899998886 3322222 11222 8999 9999999999999999887653
No 83
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=94.04 E-value=0.27 Score=32.47 Aligned_cols=57 Identities=11% Similarity=0.070 Sum_probs=46.7
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCC-----------------------------------------------------H
Q psy13834 42 STKIGNGYITTDVLREILKELDDKIS-----------------------------------------------------A 68 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s-----------------------------------------------------~ 68 (104)
||.|++|.|..-|-.+-++.+|.++- .
T Consensus 16 FDrd~DGiI~P~dTy~GFraLGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp 95 (174)
T PF05042_consen 16 FDRDKDGIIYPWDTYQGFRALGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVP 95 (174)
T ss_pred eCCCCCeeECHHHHHHHHHHhCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccccccCCcCCH
Confidence 89999999999998888888775531 5
Q ss_pred HHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 69 DDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 69 ~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+.++++|+.+...+.+.+++.|..+++...
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhc
Confidence 567889999988777889999999988753
No 84
>KOG0042|consensus
Probab=94.00 E-value=0.085 Score=40.80 Aligned_cols=61 Identities=15% Similarity=0.175 Sum_probs=56.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|.. +|.+..|+++..+..++|+..+.+.+.+.+.+++.+.+...+|.+...+|..++...
T Consensus 598 rf~~--lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 598 RFAF--LDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHh--hcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHHH
Confidence 6888 999999999999999999999889999999999999999999999999999887754
No 85
>KOG3555|consensus
Probab=93.94 E-value=0.095 Score=38.25 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=50.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
+|.. +|.|.+|.++..||+.+-. .-.+.-+..+|..+|...+|.|+-.|++..+.+..|
T Consensus 255 MFnk--lD~N~Dl~Ld~sEl~~I~l----dknE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~~ 313 (434)
T KOG3555|consen 255 MFNK--LDTNYDLLLDQSELRAIEL----DKNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSDP 313 (434)
T ss_pred hhhc--cccccccccCHHHhhhhhc----cCchhHHHHHHhhhcccccCccccchhhhhhccCCC
Confidence 8999 9999999999999886642 234455889999999999999999999999886544
No 86
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.92 E-value=0.25 Score=29.27 Aligned_cols=52 Identities=10% Similarity=0.139 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHhchhhhcCCCchh----hcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 10 YITTDVLREILKELDDKISRHPVYQD----TYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 10 ~~~~~~~~~l~~~~d~~~~~~~~~~~----~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
.++..|++.++..==..+...-++.. +++. .|.|++|.|++.||..++..+.
T Consensus 23 tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~--LD~n~Dg~vdF~EF~~Lv~~l~ 78 (91)
T cd05024 23 YLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKD--LDDCRDGKVGFQSFFSLIAGLL 78 (91)
T ss_pred cCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHH--hCCCCCCcCcHHHHHHHHHHHH
Confidence 58888888877543223333322222 8888 9999999999999999987764
No 87
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=93.60 E-value=0.19 Score=29.28 Aligned_cols=50 Identities=14% Similarity=0.235 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHH-hchhhh-----cCCCchhhcccccccCCCCcceeHHHHHHHHHHhC
Q psy13834 10 YITTDVLREILKE-LDDKIS-----RHPVYQDTYRVTKSTKIGNGYITTDVLREILKELD 63 (104)
Q Consensus 10 ~~~~~~~~~l~~~-~d~~~~-----~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g 63 (104)
.++.+++..+++. +...+. ..+.. +|+. +|.+++|.|+..+|..++..+.
T Consensus 27 ~Is~~El~~~l~~~lg~~~~~~~s~~~v~~--i~~~--~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 27 KLSKKELKDLLQTELSDFLDAQKDADAVDK--IMKE--LDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred eECHHHHHHHHHHHHHHHccCCCCHHHHHH--HHHH--HCCCCCCcCcHHHHHHHHHHHH
Confidence 4778888888864 322111 11222 8888 9999999999999999887654
No 88
>KOG4578|consensus
Probab=93.21 E-value=0.16 Score=36.90 Aligned_cols=81 Identities=12% Similarity=0.138 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhchhhhcC--------CC--chh-----hcccccccCCCCcceeHHH---HHHHHHHhCCCCCHHHHHHH
Q psy13834 13 TDVLREILKELDDKISRH--------PV--YQD-----TYRVTKSTKIGNGYITTDV---LREILKELDDKISADDLDMM 74 (104)
Q Consensus 13 ~~~~~~l~~~~d~~~~~~--------~~--~~~-----~f~~~~~D~~~~g~i~~~e---l~~~l~~~g~~~s~~~~~~l 74 (104)
.+.+..++..+..++..- +. +++ .|.. +|+|+++.|...| |+.++.... -...-..++
T Consensus 300 teFL~~Ll~aL~Tdmv~s~~~as~gr~~e~DeeRvv~w~F~q--LdkN~nn~i~rrEwKpFK~~l~k~s--~~rkC~rk~ 375 (421)
T KOG4578|consen 300 TEFLTSLLDALKTDMVMSGINASNGRKSEPDEERVVHWYFNQ--LDKNSNNDIERREWKPFKRVLLKKS--KPRKCSRKF 375 (421)
T ss_pred hHHHHHHHHHHhhhhhhhcccccCCcccCCChhheeeeeeee--ecccccCccchhhcchHHHHHHhhc--cHHHHhhhc
Confidence 356677777776662211 00 011 7999 9999999999988 455554432 112345678
Q ss_pred HHhhCCCCCCceeHHHHHHHHHh
Q psy13834 75 IAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 75 ~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+..+|.++|.+|++.|+...|..
T Consensus 376 ~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 376 FKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred chhcccCCCceecHHHHhhhhcc
Confidence 99999999999999999999874
No 89
>KOG4666|consensus
Probab=93.13 E-value=0.1 Score=37.86 Aligned_cols=57 Identities=11% Similarity=0.188 Sum_probs=47.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH-hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE-LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~-~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
+|+. |+.+.+|.++..+|..+++. +| +..-.+.-+|..++...+|+|.|.+|..+..
T Consensus 301 afk~--f~v~eDg~~ge~~ls~ilq~~lg--v~~l~v~~lf~~i~q~d~~ki~~~~f~~fa~ 358 (412)
T KOG4666|consen 301 AFKR--FSVAEDGISGEHILSLILQVVLG--VEVLRVPVLFPSIEQKDDPKIYASNFRKFAA 358 (412)
T ss_pred HHHh--cccccccccchHHHHHHHHHhcC--cceeeccccchhhhcccCcceeHHHHHHHHH
Confidence 8999 99999999999999999985 44 3333456788899888899999999998776
No 90
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=92.98 E-value=0.23 Score=29.11 Aligned_cols=29 Identities=17% Similarity=0.236 Sum_probs=25.1
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
++..+|..+|.+++|.|+++++..++...
T Consensus 11 ~l~~~F~~~D~d~~G~Is~~el~~~l~~~ 39 (96)
T smart00027 11 KYEQIFRSLDKNQDGTVTGAQAKPILLKS 39 (96)
T ss_pred HHHHHHHHhCCCCCCeEeHHHHHHHHHHc
Confidence 45677999999999999999999998764
No 91
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=92.78 E-value=0.1 Score=30.49 Aligned_cols=49 Identities=10% Similarity=0.134 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHH-----hchhhh-cCCCchhhcccccccCCCCcceeHHHHHHHHHHh
Q psy13834 10 YITTDVLREILKE-----LDDKIS-RHPVYQDTYRVTKSTKIGNGYITTDVLREILKEL 62 (104)
Q Consensus 10 ~~~~~~~~~l~~~-----~d~~~~-~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~ 62 (104)
.++.++++.+++. +..... ..+.. +++. .|.|++|.|+..+|..++..+
T Consensus 26 ~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~--~i~~--~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 26 KLKKSELKELINNELSHFLEEIKEQEVVDK--VMET--LDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred EECHHHHHHHHHHHhHHHhcCCCCHHHHHH--HHHH--hCCCCCCcCcHHHHHHHHHHH
Confidence 4778888888875 222111 11222 7888 999999999999999888764
No 92
>KOG2562|consensus
Probab=92.66 E-value=0.37 Score=36.40 Aligned_cols=56 Identities=16% Similarity=0.319 Sum_probs=43.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH-------hC-CCCC-HHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE-------LD-DKIS-ADDLDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~-------~g-~~~s-~~~~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
.|+. .|.+++|.|+..|++-+... .| ..++ ++-+.+++........+.|+..+|..
T Consensus 356 wFrc--lDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 356 WFRC--LDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred heee--eeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 9999 99999999999998766653 23 2333 44566778877777788999999886
No 93
>PF14658 EF-hand_9: EF-hand domain
Probab=91.99 E-value=0.3 Score=27.23 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=20.5
Q ss_pred hcccccccCCCC-cceeHHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGN-GYITTDVLREILKE 61 (104)
Q Consensus 36 ~f~~~~~D~~~~-g~i~~~el~~~l~~ 61 (104)
..+. +|+++. |.|+.+.|..+|+.
T Consensus 40 l~~e--lDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 40 LINE--LDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred HHHH--hCCCCCCceEeHHHHHHHHHH
Confidence 5555 899988 99999999999875
No 94
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=91.78 E-value=0.28 Score=26.18 Aligned_cols=27 Identities=22% Similarity=0.294 Sum_probs=22.9
Q ss_pred HHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 72 DMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 72 ~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.++|..+|.+++|.|+.+|+..++...
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~ 28 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS 28 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc
Confidence 357888999999999999999988654
No 95
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=91.66 E-value=0.31 Score=27.96 Aligned_cols=29 Identities=3% Similarity=0.053 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCC--CCCCceeHHHHHHHHHh
Q psy13834 69 DDLDMMIAEIDS--DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 69 ~~~~~l~~~~d~--~~~g~I~~~eF~~~l~~ 97 (104)
+.+..+|..+|. +++|.|++.+|..++..
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~ 38 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLET 38 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHH
Confidence 346778999999 89999999999999865
No 96
>KOG0169|consensus
Probab=91.55 E-value=0.32 Score=38.68 Aligned_cols=61 Identities=20% Similarity=0.299 Sum_probs=56.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|+. .|++.+|.++..+...+++.+...++...+..++.+++...++++.+.+|+.+....
T Consensus 141 ~~~~--ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 141 IFQE--ADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred HHHH--HccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhh
Confidence 8999 999999999999999999999888998899999999988899999999999887755
No 97
>KOG0038|consensus
Probab=91.13 E-value=0.37 Score=31.27 Aligned_cols=58 Identities=14% Similarity=0.230 Sum_probs=38.0
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCC-HHHHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 42 STKIGNGYITTDVLREILKELDDKIS-ADDLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s-~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
|..+|.|.++.++|..++.-+..-.. +-.+.-.|.-+|-|+++.|.-++....+..+.
T Consensus 80 FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lT 138 (189)
T KOG0038|consen 80 FSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLT 138 (189)
T ss_pred hccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHh
Confidence 55588888988888888876543222 11222345666778888888777777776553
No 98
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=90.77 E-value=0.4 Score=35.57 Aligned_cols=53 Identities=19% Similarity=0.137 Sum_probs=39.7
Q ss_pred CCCCCCHHHHHHHHHHhchh------hhcCCCchhhcccccccCCCCcceeHHHHHHHHHH
Q psy13834 7 GNGYITTDVLREILKELDDK------ISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKE 61 (104)
Q Consensus 7 ~~~~~~~~~~~~l~~~~d~~------~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~ 61 (104)
.|.......+..+++.+|.+ ..+.+..+.+|+. +|.|++|.|+.+||..++..
T Consensus 327 ~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~~~~~F~~--~D~d~DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 327 EGGEAFTHAAQEIFRLYDLDGDGFITREEWLGSDAVFDA--LDLNHDGKITPEEMRAGLGA 385 (391)
T ss_pred hccChhhHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHH--hCCCCCCCCcHHHHHHHHHH
Confidence 35666778888889888876 1121211228999 99999999999999999875
No 99
>KOG0035|consensus
Probab=90.43 E-value=0.35 Score=39.24 Aligned_cols=63 Identities=13% Similarity=0.057 Sum_probs=53.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCH-----HHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISA-----DDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~-----~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
.|+. ++....|.++.+++..++-.+|.+.-. ++|..++...+....|+++|.+|...+.+.+.
T Consensus 752 le~~--~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 752 LENE--QDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHhH--HHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 8999 999999999999999999999987774 34566777777777799999999999987654
No 100
>KOG0041|consensus
Probab=89.31 E-value=0.58 Score=31.87 Aligned_cols=34 Identities=32% Similarity=0.508 Sum_probs=29.2
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhh-CCCCC
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKILIL-APETA 103 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~~~-~~~~~ 103 (104)
....+|..+|.+.||.|++-|.-.+|..+ .|.|+
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTH 134 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTH 134 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCchhh
Confidence 45678999999999999999999999877 66664
No 101
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=89.17 E-value=1.9 Score=24.05 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=34.7
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
+.+++..+++..|..+|.+++..++..-+..+--.++-..+..++.
T Consensus 15 ~d~~m~~if~l~~~~vs~~el~a~lrke~~~~y~~c~D~~L~~FL~ 60 (68)
T PF07308_consen 15 KDDDMIEIFALAGFEVSKAELSAWLRKEDEKGYKECSDQLLRNFLN 60 (68)
T ss_pred ChHHHHHHHHHcCCccCHHHHHHHHCCCCCccccccChHHHHHHHH
Confidence 3467899999999999999999999887766555566555555554
No 102
>KOG1029|consensus
Probab=88.20 E-value=1.5 Score=35.55 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=46.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.|.. +- -+.|+||...-+.++-..|. ...-+.++++..|.|+||+++..||.-.|.
T Consensus 21 qF~~--Lk-p~~gfitg~qArnfflqS~L--P~~VLaqIWALsDldkDGrmdi~EfSIAmk 76 (1118)
T KOG1029|consen 21 QFGQ--LK-PGQGFITGDQARNFFLQSGL--PTPVLAQIWALSDLDKDGRMDIREFSIAMK 76 (1118)
T ss_pred HHhc--cC-CCCCccchHhhhhhHHhcCC--ChHHHHHHHHhhhcCccccchHHHHHHHHH
Confidence 4555 44 45799999999999998884 445689999999999999999999987654
No 103
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=87.38 E-value=2.7 Score=24.55 Aligned_cols=51 Identities=10% Similarity=0.092 Sum_probs=37.2
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
..||..||.+.-+..+.+++.++...++..+....=...+=++=..++..+
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkei 63 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEI 63 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 358899999999999999999999988888765544444444444444444
No 104
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=86.79 E-value=1.3 Score=27.22 Aligned_cols=30 Identities=13% Similarity=0.279 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 66 ISADDLDMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 66 ~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
.....+..+|..+|.|++|.|+.+|+..+.
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~ 74 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR 74 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 344568889999999999999999999775
No 105
>KOG4251|consensus
Probab=85.34 E-value=1.4 Score=31.01 Aligned_cols=53 Identities=9% Similarity=0.293 Sum_probs=44.6
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~ 94 (104)
.|.|++|.+|.++|...+.-....+.-.++..++..-+.+++.+++.++.+..
T Consensus 290 IDsNhDGivTaeELe~y~dP~n~~~alne~~~~ma~~d~n~~~~Ls~eell~r 342 (362)
T KOG4251|consen 290 IDSNHDGIVTAEELEDYVDPQNFRLALNEVNDIMALTDANNDEKLSLEELLER 342 (362)
T ss_pred hhcCCccceeHHHHHhhcCchhhhhhHHHHHHHHhhhccCCCcccCHHHHHHH
Confidence 68999999999999988766666666677888999999999999999987764
No 106
>KOG2562|consensus
Probab=83.40 E-value=2.1 Score=32.55 Aligned_cols=60 Identities=17% Similarity=0.159 Sum_probs=51.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|.. .+.+..|.|+...|...+.. +..++...+.+++...+..+.+.+.-.+|...+..+
T Consensus 144 ~f~k--~~~d~~g~it~~~Fi~~~~~-~~~l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqel 203 (493)
T KOG2562|consen 144 TFRK--IDGDDTGHITRDKFINYWMR-GLMLTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQEL 203 (493)
T ss_pred hhhh--hccCcCCceeHHHHHHHHHh-hhhHHHHHHHHHHHHHhccCccceeccccHHHHHHH
Confidence 7888 99999999999999988876 455777788999999999999998888888877755
No 107
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=83.02 E-value=3.4 Score=22.86 Aligned_cols=32 Identities=16% Similarity=0.349 Sum_probs=27.5
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
=-|+.+-++.++..+|.++|+.++.++.+.+.
T Consensus 30 Ppine~mir~M~~QMG~kpSekqi~Q~m~~mk 61 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGRKPSEKQIKQMMRSMK 61 (64)
T ss_pred CCCCHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 35788889999999999999999999987653
No 108
>KOG0751|consensus
Probab=82.84 E-value=4.5 Score=31.32 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=10.6
Q ss_pred HHHhhCCCCCCceeHHHHHHHHH
Q psy13834 74 MIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 74 l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.|..+|+.++|.+++++|..++.
T Consensus 113 aFqlFDr~~~~~vs~~~~~~if~ 135 (694)
T KOG0751|consen 113 AFQLFDRLGNGEVSFEDVADIFG 135 (694)
T ss_pred HHHHhcccCCCceehHHHHHHHh
Confidence 44444444444444444444443
No 109
>KOG0751|consensus
Probab=81.26 E-value=2.2 Score=32.93 Aligned_cols=55 Identities=16% Similarity=0.306 Sum_probs=38.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-CCCceeHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSD-GSGTVDFDVIQ 92 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~-~~g~I~~~eF~ 92 (104)
+|+. .|+.++|+|+.-+++.++......+....++..+...... ..-+++|..|.
T Consensus 184 afr~--~d~~~ng~is~Ldfq~imvt~~~h~lt~~v~~nlv~vagg~~~H~vSf~yf~ 239 (694)
T KOG0751|consen 184 AFRE--KDKAKNGFISVLDFQDIMVTIRIHLLTPFVEENLVSVAGGNDSHQVSFSYFN 239 (694)
T ss_pred HHHH--hcccCCCeeeeechHhhhhhhhhhcCCHHHhhhhhhhcCCCCccccchHHHH
Confidence 8999 9999999999999999999876666556666655444322 22245554443
No 110
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=80.32 E-value=1.6 Score=25.72 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=36.6
Q ss_pred CcceeHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 47 NGYITTDVLREILKELD--DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g--~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.++..|...+-.-+. .+++.++...++..+........++.+|...+...
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 66 (104)
T cd07313 13 DGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKEH 66 (104)
T ss_pred cCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 68888887655554322 35777788888887776666668888888887754
No 111
>PRK00523 hypothetical protein; Provisional
Probab=78.87 E-value=5.3 Score=22.59 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=27.3
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
=-|+.+-++.++..+|.++|+.++.++.+.+
T Consensus 38 Ppine~mir~M~~QMGqKPSekki~Q~m~~m 68 (72)
T PRK00523 38 PPITENMIRAMYMQMGRKPSESQIKQVMRSV 68 (72)
T ss_pred cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 3577888999999999999999999998876
No 112
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=77.83 E-value=7.7 Score=21.45 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=29.4
Q ss_pred ccCCCCcceeHHHHHHHHHH----------hCCCCCHHHHHHHHHhhCC
Q psy13834 42 STKIGNGYITTDVLREILKE----------LDDKISADDLDMMIAEIDS 80 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~----------~g~~~s~~~~~~l~~~~d~ 80 (104)
||...+.+|+-+++.++++. .|..++..-+.+++.+...
T Consensus 12 YDT~~s~YiTL~di~~lV~~g~~~~V~D~ktgeDiT~~iL~QIi~e~e~ 60 (64)
T PF07879_consen 12 YDTETSSYITLEDIAQLVREGEDFKVVDAKTGEDITRSILLQIILEEES 60 (64)
T ss_pred ccCCCceeEeHHHHHHHHHCCCeEEEEECCCCcccHHHHHHHHHHHHHh
Confidence 89999999999999999985 2455666666666665543
No 113
>PLN02952 phosphoinositide phospholipase C
Probab=77.76 E-value=12 Score=29.45 Aligned_cols=54 Identities=11% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCcceeHHHHHHHHHHhC--CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 46 GNGYITTDVLREILKELD--DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 46 ~~g~i~~~el~~~l~~~g--~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
..|.++..++..+.+.+. ......++..+|..+..+ .+.++.++|..+|.....
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~ 68 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQD 68 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCC
Confidence 457888888887777653 233567888888888654 367888888888876543
No 114
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=76.74 E-value=8.2 Score=21.69 Aligned_cols=29 Identities=7% Similarity=0.102 Sum_probs=22.6
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+|..+|..+.. +.+.++.++|..+|....
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ 29 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQ 29 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTS
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHh
Confidence 46778888865 678899999999887543
No 115
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=76.23 E-value=3.1 Score=26.51 Aligned_cols=50 Identities=10% Similarity=0.155 Sum_probs=28.6
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHhh
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDS-------DGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~-------~~~g~I~~~eF~~~l~~~ 98 (104)
-+.|+..||.++=+.+-. +...+..++.++.. +..+.|+|+.|..+|...
T Consensus 5 ~~~lsp~eF~qLq~y~ey--s~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y 61 (138)
T PF14513_consen 5 WVSLSPEEFAQLQKYSEY--STKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY 61 (138)
T ss_dssp -S-S-HHHHHHHHHHHHH------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH
T ss_pred eeccCHHHHHHHHHHHHH--HHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH
Confidence 367888888777665432 33446667777632 345579999999988754
No 116
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=74.81 E-value=4.6 Score=17.24 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=11.2
Q ss_pred cCCCCcceeHHHHHHHH
Q psy13834 43 TKIGNGYITTDVLREIL 59 (104)
Q Consensus 43 D~~~~g~i~~~el~~~l 59 (104)
|-|++|.|+.-++..+-
T Consensus 1 DvN~DG~vna~D~~~lk 17 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALLK 17 (21)
T ss_dssp -TTSSSSSSHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHH
Confidence 45778888877765543
No 117
>PRK01844 hypothetical protein; Provisional
Probab=74.73 E-value=8.1 Score=21.87 Aligned_cols=30 Identities=17% Similarity=0.400 Sum_probs=26.9
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
-|+.+-++.++...|.++|+.++.++.+.+
T Consensus 38 pine~mir~Mm~QMGqkPSekki~Q~m~~m 67 (72)
T PRK01844 38 PINEQMLKMMMMQMGQKPSQKKINQMMSAM 67 (72)
T ss_pred CCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 577888999999999999999999998876
No 118
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=74.44 E-value=17 Score=22.18 Aligned_cols=47 Identities=23% Similarity=0.366 Sum_probs=27.3
Q ss_pred ccCCCCcceeHHHHHHHHHH----------hCCCCCHHHHHHHHHhhCCCCCCceeH
Q psy13834 42 STKIGNGYITTDVLREILKE----------LDDKISADDLDMMIAEIDSDGSGTVDF 88 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~----------~g~~~s~~~~~~l~~~~d~~~~g~I~~ 88 (104)
||...+-+||-+++.+++.. .|..++..-+-+++.+....+...++-
T Consensus 12 YDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E~E~~g~~~lp~ 68 (107)
T TIGR01848 12 YDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAEEESGGEPVLST 68 (107)
T ss_pred cCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHHHHhCCCCCCCH
Confidence 66666777777777777664 134455555556666555444444443
No 119
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.00 E-value=8.5 Score=21.67 Aligned_cols=32 Identities=16% Similarity=0.331 Sum_probs=27.3
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
=-|+.+-++.++...|.++|+..+++++..+-
T Consensus 37 Ppine~~iR~M~~qmGqKpSe~kI~Qvm~~i~ 68 (71)
T COG3763 37 PPINEEMIRMMMAQMGQKPSEKKINQVMRSII 68 (71)
T ss_pred CCCCHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 45788889999999999999999999887653
No 120
>KOG0998|consensus
Probab=73.95 E-value=0.77 Score=37.35 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=50.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.. .|.+.+|.|+..+....+...| ++...+.+++...+....|.+++.+|+-.+..
T Consensus 288 if~q--~d~~~dG~I~s~~~~~~f~~~g--l~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 288 IFSQ--VDKDNDGSISSNEARNIFLPFG--LSKPRLAHVWLLADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHh--ccccCCCcccccccccccccCC--CChhhhhhhhhhcchhccCcccccccchhhhh
Confidence 6888 9999999999999999988855 77778999999999999999999999876653
No 121
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=71.85 E-value=11 Score=25.08 Aligned_cols=39 Identities=15% Similarity=0.200 Sum_probs=25.4
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDS 80 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~ 80 (104)
+..+.+|++..++|.+.+..-+..++.+++.+++...++
T Consensus 25 L~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~~~K 63 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVETDDK 63 (186)
T ss_dssp ----TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH-SS
T ss_pred CccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhhCCC
Confidence 356789999999999999987778899999999877553
No 122
>KOG4666|consensus
Probab=71.79 E-value=13 Score=27.45 Aligned_cols=60 Identities=8% Similarity=0.052 Sum_probs=48.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL-DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~-g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.|.. ||.+++|.++..+-...+.-+ |...+.+-++--|..++.+.||.+.=++|..+++.
T Consensus 264 ~f~L--Fde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 264 TFML--FDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhe--ecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHH
Confidence 9999 999999999988877666644 55667676777789999999999998888777663
No 123
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=71.42 E-value=12 Score=20.27 Aligned_cols=33 Identities=15% Similarity=0.387 Sum_probs=27.5
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
+..+|.+|+..++..++..++..++.-++...-
T Consensus 7 s~~lTeEEl~~~i~~L~~~~~~~dm~~IW~~v~ 39 (61)
T TIGR01639 7 SKKLSKEELNELINSLDEIPNRNDMLIIWNQVH 39 (61)
T ss_pred hHHccHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 356889999999999999999888887776654
No 124
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=70.30 E-value=4.9 Score=22.57 Aligned_cols=47 Identities=11% Similarity=0.231 Sum_probs=29.0
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.+++..|-.++. ..++.+.+..+...+..=..++|+-+||+..+...
T Consensus 8 ~~~F~~L~~~l~---~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALS---KHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHH---HHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 344444444444 34555556666555554457789999999887653
No 125
>KOG3449|consensus
Probab=69.74 E-value=8.7 Score=23.55 Aligned_cols=51 Identities=18% Similarity=0.444 Sum_probs=40.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
+|-. ++.-++-..+..++++++...|.....+.++.++.+.. |+ +.+|.+.
T Consensus 6 AYLL--~~lgGn~~psa~DikkIl~sVG~E~d~e~i~~visel~----GK-~i~ElIA 56 (112)
T KOG3449|consen 6 AYLL--AVLGGNASPSASDIKKILESVGAEIDDERINLVLSELK----GK-DIEELIA 56 (112)
T ss_pred HHHH--HHhcCCCCCCHHHHHHHHHHhCcccCHHHHHHHHHHhc----CC-CHHHHHH
Confidence 4555 67777778899999999999999999999999998884 33 4455544
No 126
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=69.04 E-value=4.5 Score=24.40 Aligned_cols=24 Identities=4% Similarity=0.111 Sum_probs=20.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE 61 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~ 61 (104)
++.. .|.+++|+++.+||.-+|.-
T Consensus 48 IW~L--aD~~~dG~L~~~EF~iAm~L 71 (104)
T PF12763_consen 48 IWNL--ADIDNDGKLDFEEFAIAMHL 71 (104)
T ss_dssp HHHH--H-SSSSSEEEHHHHHHHHHH
T ss_pred HHhh--hcCCCCCcCCHHHHHHHHHH
Confidence 7788 89999999999999888763
No 127
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=68.43 E-value=19 Score=23.87 Aligned_cols=38 Identities=21% Similarity=0.259 Sum_probs=31.0
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
+..|.+|++..++|...++.-+..++.+.+.+++..-+
T Consensus 26 L~ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~ 63 (179)
T PRK00819 26 LTLDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDD 63 (179)
T ss_pred CccCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCC
Confidence 45578899999999999986667789898888877554
No 128
>PF14337 DUF4393: Domain of unknown function (DUF4393)
Probab=67.32 E-value=8.6 Score=25.15 Aligned_cols=50 Identities=24% Similarity=0.345 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHh-----hCCCCCCceeHHHHHHHHHhhCCCCCC
Q psy13834 54 VLREILKELDDKISADDLDMMIAE-----IDSDGSGTVDFDVIQRKILILAPETAR 104 (104)
Q Consensus 54 el~~~l~~~g~~~s~~~~~~l~~~-----~d~~~~g~I~~~eF~~~l~~~~~~~~~ 104 (104)
-...++..+....+++++.+||+. ++.+.+..+. .-|+.++.++.|..|+
T Consensus 18 i~~p~le~~~~~~~~e~Lremfa~LLass~d~~~~~~~h-p~fv~Ii~qLsp~EA~ 72 (186)
T PF14337_consen 18 IAGPALEAASYEIDDEELREMFANLLASSMDKRKNDDVH-PSFVEIIKQLSPDEAR 72 (186)
T ss_pred hhHHHHHhccCcCCcHHHHHHHHHHHHHHhCcCcccccc-HHHHHHHHhCCHHHHH
Confidence 345666677777788888887754 3555444444 4499999988887653
No 129
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=66.06 E-value=16 Score=21.58 Aligned_cols=58 Identities=9% Similarity=0.119 Sum_probs=33.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH-------hCC----CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE-------LDD----KISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~-------~g~----~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|+. + .|++|.++...|...+.. +|+ +-.+.-+..+|.... .+..|+-++|+.-+...
T Consensus 8 lFsl--i-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 8 LFSL--I-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHH--H-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT-
T ss_pred HHHH--H-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhC
Confidence 7777 6 577899999988777664 343 224445555666552 45679999999988854
No 130
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=64.62 E-value=15 Score=23.47 Aligned_cols=42 Identities=19% Similarity=0.261 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHH----------hhCCCCCCceeHHHHHHH
Q psy13834 53 DVLREILKELDDKISADDLDMMIA----------EIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 53 ~el~~~l~~~g~~~s~~~~~~l~~----------~~d~~~~g~I~~~eF~~~ 94 (104)
.=+.+-.+++|+.++++|+..++. .+-.+.+|..+-..|..+
T Consensus 93 ~ll~~e~eklGi~Vs~~El~d~l~~g~~p~~~~~~~f~~~tG~Fd~~~l~~f 144 (145)
T PF13623_consen 93 ILLEQEFEKLGITVSDDELQDMLNQGTNPMLQQNPFFNPQTGQFDRAKLKQF 144 (145)
T ss_pred HHHHHHHHHhCCccCHHHHHHHHhcCCCchhhhccccCcccCCcCHHHHHhh
Confidence 345566677899999999988881 123456777776666544
No 131
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=64.01 E-value=7.8 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.575 Sum_probs=21.5
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSD 81 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~ 81 (104)
.|+||..++..+|.... ++.++++.++..+...
T Consensus 19 ~G~lT~~eI~~~L~~~~--~~~e~id~i~~~L~~~ 51 (82)
T PF03979_consen 19 KGYLTYDEINDALPEDD--LDPEQIDEIYDTLEDE 51 (82)
T ss_dssp HSS-BHHHHHHH-S-S-----HHHHHHHHHHHHTT
T ss_pred cCcCCHHHHHHHcCccC--CCHHHHHHHHHHHHHC
Confidence 68999999999998544 7778888888777543
No 132
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=63.75 E-value=27 Score=23.20 Aligned_cols=56 Identities=16% Similarity=0.118 Sum_probs=37.7
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCC-------CCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDD-------KISADDLDMMIAEIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~-------~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~ 94 (104)
+|.. |+..+.+.+|..|+..+++.-.. .-+.-|+..++... .+.+|.+.-+.-..+
T Consensus 101 iF~k--ya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~-~d~dG~l~Ke~iR~v 163 (174)
T PF05042_consen 101 IFSK--YAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILA-KDKDGFLSKEDIRGV 163 (174)
T ss_pred HHHH--hCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHH-cCcCCcEeHHHHhhh
Confidence 8998 99888899999999999986221 12233444444444 566888877765543
No 133
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=62.70 E-value=13 Score=20.16 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=21.4
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13834 49 YITTDVLREILKELDDKISADDLDMM 74 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l 74 (104)
.|+.++|..+|+...-.++.+++.+.
T Consensus 29 ~it~~DF~~Al~~~kpSVs~~dl~~y 54 (62)
T PF09336_consen 29 PITMEDFEEALKKVKPSVSQEDLKKY 54 (62)
T ss_dssp HBCHHHHHHHHHTCGGSS-HHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCCHHHHHHH
Confidence 58899999999999888998888753
No 134
>KOG1707|consensus
Probab=62.42 E-value=4.1 Score=31.97 Aligned_cols=53 Identities=8% Similarity=0.155 Sum_probs=37.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCC----CHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKI----SADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~----s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.|.. ||.|++|.+...||..++....... ...+.. -....|.++|.-|+..+.
T Consensus 320 ~f~~--~D~d~Dg~L~p~El~~LF~~~P~~pW~~~~~~~~t------~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 320 VFEK--FDRDNDGALSPEELKDLFSTAPGSPWTSSPYKDST------VKNERGWLTLNGFLSQWS 376 (625)
T ss_pred HHHh--ccCCCCCCcCHHHHHHHhhhCCCCCCCCCcccccc------eecccceeehhhHHHHHH
Confidence 8999 9999999999999999999875433 101100 012467788888877554
No 135
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=62.00 E-value=20 Score=18.16 Aligned_cols=40 Identities=15% Similarity=0.200 Sum_probs=27.0
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 53 DVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 53 ~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
+|...++..+| .+..++.+.+..... ...++.++.+....
T Consensus 4 ~d~~~AL~~LG--y~~~e~~~av~~~~~--~~~~~~e~~ik~aL 43 (47)
T PF07499_consen 4 EDALEALISLG--YSKAEAQKAVSKLLE--KPGMDVEELIKQAL 43 (47)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHH--STTS-HHHHHHHHH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHhhc--CCCCCHHHHHHHHH
Confidence 57778888888 677788888888864 33366777766544
No 136
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=61.72 E-value=16 Score=22.43 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=36.6
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
.-.-++..+|.+++.++++..|..+....+..++..+.. .+.++.+.
T Consensus 12 ~~lgG~~~pTaddI~kIL~AaGveVd~~~~~l~~~~L~G-----KdI~ELIa 58 (112)
T PTZ00373 12 CVLGGNENPTKKEVKNVLSAVNADVEDDVLDNFFKSLEG-----KTPHELIA 58 (112)
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 445567779999999999999999998888888877743 44566554
No 137
>KOG0040|consensus
Probab=58.66 E-value=12 Score=33.08 Aligned_cols=34 Identities=18% Similarity=0.408 Sum_probs=28.6
Q ss_pred CCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 65 KISADD---LDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 65 ~~s~~~---~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
++|++. +..+|..||.+.+|.++|.+|-.++..+
T Consensus 2246 GVtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrsl 2282 (2399)
T KOG0040|consen 2246 GVTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSL 2282 (2399)
T ss_pred CCCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhc
Confidence 566654 4568999999999999999999999865
No 138
>KOG2871|consensus
Probab=56.89 E-value=9.7 Score=28.43 Aligned_cols=56 Identities=14% Similarity=0.279 Sum_probs=40.6
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHH-HHHHHHhhCCCCCCceeHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADD-LDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~-~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
.|+. +|+.++|+|+..-++.++..+...+++.. +..+=...+...-|.|-..+|..
T Consensus 314 ~f~a--~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~lg 370 (449)
T KOG2871|consen 314 NFHA--YDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFLG 370 (449)
T ss_pred hhhc--cCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEeccccc
Confidence 8999 99999999999999999999886666543 33333444555666665555443
No 139
>PF06207 DUF1002: Protein of unknown function (DUF1002); InterPro: IPR009343 This protein family has no known function. Its members are about 300 amino acids in length. It has so far been detected in Firmicute bacteria and some archaebacteria.
Probab=56.21 E-value=23 Score=24.47 Aligned_cols=47 Identities=11% Similarity=0.293 Sum_probs=35.7
Q ss_pred eHHHHHHHHH----HhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 51 TTDVLREILK----ELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 51 ~~~el~~~l~----~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+.++++.++. .+++.++++++.++...+..=.+-.++|.+|..-+..
T Consensus 173 t~~eI~~IV~~~~~~~~i~ls~~q~~~i~~l~~~~~~~~~~~~~~k~ql~~ 223 (225)
T PF06207_consen 173 TDEEIRNIVNNVLNNYNINLSDEQIQQIVNLMKKIQNLNIDWKQVKEQLNN 223 (225)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 6777777666 4688999999999887776555556888988887754
No 140
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=55.70 E-value=18 Score=19.76 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=31.1
Q ss_pred CCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCC
Q psy13834 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDG 82 (104)
Q Consensus 46 ~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~ 82 (104)
.++-++...+.+.+...|..++.+.+...+..++.++
T Consensus 10 ~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCC
Confidence 3467889999999998899999999998888887764
No 141
>KOG1954|consensus
Probab=54.23 E-value=22 Score=26.92 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.4
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
+|+|+...-++.|... ++.+..+-+++...|.|.+|.++=+||.-
T Consensus 457 ~gk~sg~~ak~~mv~s--klpnsvlgkiwklad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 457 NGKLSGRNAKKEMVKS--KLPNSVLGKIWKLADIDKDGMLDDEEFAL 501 (532)
T ss_pred CceeccchhHHHHHhc--cCchhHHHhhhhhhcCCcccCcCHHHHHH
Confidence 6888888777777654 46677789999999999999999999964
No 142
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.34 E-value=12 Score=24.09 Aligned_cols=61 Identities=23% Similarity=0.324 Sum_probs=44.3
Q ss_pred hcccccccCCCCcceeHHH---HHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCCC
Q psy13834 36 TYRVTKSTKIGNGYITTDV---LREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAPE 101 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~e---l~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~~ 101 (104)
.|++ .+.| |.++..| |+.+++. .+.++..++..++.....-+...++|..|-..+.+-.++
T Consensus 35 lf~V--m~AD--G~v~~~E~~a~r~il~~-~f~i~~~~l~ali~~~e~~~~Ea~d~y~fts~l~r~Ld~ 98 (148)
T COG4103 35 LFHV--MEAD--GTVSESEREAFRAILKE-NFGIDGEELDALIEAGEEAGYEAIDLYSFTSVLKRHLDE 98 (148)
T ss_pred HHHH--Hhcc--cCcCHHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCH
Confidence 7888 6654 6677666 4444443 366888999999988877777889999999888854443
No 143
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=52.77 E-value=17 Score=17.00 Aligned_cols=16 Identities=19% Similarity=0.104 Sum_probs=11.4
Q ss_pred CCceeHHHHHHHHHhh
Q psy13834 83 SGTVDFDVIQRKILIL 98 (104)
Q Consensus 83 ~g~I~~~eF~~~l~~~ 98 (104)
.|+|++++++.+..+.
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 4678888888776653
No 144
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=49.55 E-value=34 Score=20.85 Aligned_cols=51 Identities=16% Similarity=0.229 Sum_probs=38.3
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+-..++..+|.+++..+++..|..+....+..++..+.. .+.++.+..-..
T Consensus 10 ~~l~g~~~pTa~dI~~IL~AaGveVe~~~~~lf~~~L~G-----Kdi~eLIa~g~~ 60 (109)
T cd05833 10 AVLGGNASPSAADVKKILGSVGVEVDDEKLNKVISELEG-----KDVEELIAAGKE 60 (109)
T ss_pred HHHcCCCCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHHhHh
Confidence 445667789999999999999999988877777776642 456777665443
No 145
>KOG4347|consensus
Probab=49.36 E-value=20 Score=28.61 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=13.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL 62 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~ 62 (104)
.|+. +|.+.+|.|+..++...+..+
T Consensus 560 lF~l--~D~s~~g~Ltf~~lv~gL~~l 584 (671)
T KOG4347|consen 560 LFRL--LDDSMTGLLTFKDLVSGLSIL 584 (671)
T ss_pred HHHh--cccCCcceeEHHHHHHHHHHH
Confidence 4555 555555555555555544443
No 146
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=48.11 E-value=54 Score=20.13 Aligned_cols=46 Identities=17% Similarity=0.356 Sum_probs=34.7
Q ss_pred cCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHH
Q psy13834 43 TKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93 (104)
Q Consensus 43 D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~ 93 (104)
-..++..+|.+++.++++..|..+....+..++..+.. .+.++.+.
T Consensus 11 ~l~g~~~pta~dI~~IL~AaGvevd~~~~~~f~~~L~g-----K~i~eLIa 56 (113)
T PLN00138 11 VLGGNTCPSAEDLKDILGSVGADADDDRIELLLSEVKG-----KDITELIA 56 (113)
T ss_pred HhcCCCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHHH
Confidence 34456679999999999999999888877777777742 45566664
No 147
>PLN02222 phosphoinositide phospholipase C 2
Probab=47.95 E-value=53 Score=25.98 Aligned_cols=58 Identities=19% Similarity=0.312 Sum_probs=43.1
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDD--KISADDLDMMIAEIDS-DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~--~~s~~~~~~l~~~~d~-~~~g~I~~~eF~~~l~~ 97 (104)
+|.. |.. ++.++.++|...|..... ..+.+....+|..+.. -..+.++++.|..+|..
T Consensus 30 if~~--~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 30 IFEK--YSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSASSLLHRNGLHLDAFFKYLFG 90 (581)
T ss_pred HHHH--hcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcC
Confidence 5666 653 479999999999997643 3566777888887532 23567999999999975
No 148
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=47.86 E-value=44 Score=20.33 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 52 TDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
.+|++.++..+...++++++++++..
T Consensus 81 ~dElrai~~~~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 81 RDELRAIFAKERYTLSPEELDEILDI 106 (112)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45555566555555666666655543
No 149
>PLN02228 Phosphoinositide phospholipase C
Probab=46.41 E-value=75 Score=25.10 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=38.6
Q ss_pred cceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHhh
Q psy13834 48 GYITTDVLREILKELDD--KISADDLDMMIAEIDSD----GSGTVDFDVIQRKILIL 98 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~--~~s~~~~~~l~~~~d~~----~~g~I~~~eF~~~l~~~ 98 (104)
+.++.++|.+.|..... ..+.+.+..++..+... ..|.++.+.|..+|...
T Consensus 37 ~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 37 GKMSFDELLRFVSEVQGERHAGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CccCHHHHHHHHHHhcCCccCCHHHHHHHHHHhccchhhcccCccCHHHHHHHhcCc
Confidence 57999999999987642 34556678888877543 34679999999999753
No 150
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=46.40 E-value=12 Score=20.88 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=32.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC-------CCCceeHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSD-------GSGTVDFDVIQRK 94 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~-------~~g~I~~~eF~~~ 94 (104)
+|+. . .++.++||..+|++.|.. ++.+-++..+..- ..|..+|..|++.
T Consensus 11 aFr~--l-A~~KpyVT~~dLr~~l~p-------e~aey~~~~Mp~~~~~~~~~~~~~~DY~~f~~~ 66 (69)
T PF08726_consen 11 AFRA--L-AGGKPYVTEEDLRRSLTP-------EQAEYCISRMPPYEGPDGDAIPGAYDYESFTNS 66 (69)
T ss_dssp HHHH--H-CTSSSCEEHHHHHHHS-C-------CCHHHHHCCSEC--SSS----TTEEECHHHHCC
T ss_pred HHHH--H-HcCCCcccHHHHHHHcCc-------HHHHHHHHHCcccCCCCcCCCCCCcCHHHHHHH
Confidence 7888 7 678899999999987632 2234455444321 2367999988753
No 151
>TIGR00135 gatC glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, C subunit. This model has been revised to remove the candidate sequence from Methanococcus jannaschii, now part of a related model.
Probab=46.33 E-value=52 Score=19.01 Aligned_cols=28 Identities=11% Similarity=0.280 Sum_probs=19.5
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
|+.+++.++-+-+...++++++.++...
T Consensus 1 i~~~~v~~lA~La~L~l~eee~~~~~~~ 28 (93)
T TIGR00135 1 ISDEEVKHLAKLARLELSEEEAESFAGD 28 (93)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4567777777777778888877665443
No 152
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=46.29 E-value=65 Score=19.42 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=35.5
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhh---CCCCCCceeHHHHHHHHHhhCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEI---DSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~---d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
-|.. +-. +|+|+..+|.+++ |.+=|.+-..++|..+ -.-..+.|+.+|...+..+...
T Consensus 35 RFd~--La~--dG~L~rs~Fg~CI---GM~dSkeFA~eLFdALaRrr~i~~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 35 RFDK--LAK--DGLLPRSDFGECI---GMKDSKEFAGELFDALARRRGIKGDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHH--H-B--TTBEEGGGHHHHH---T--S-HHHHHHHHHHHHHHTT--SSEE-HHHHHHHHHHHH-
T ss_pred HHHH--hCc--CCcccHHHHHHhc---CCcccHHHHHHHHHHHHHhcCCccCCcCHHHHHHHHHHhhc
Confidence 4555 554 7999999999998 6554555455555443 2233577999999988877643
No 153
>cd04411 Ribosomal_P1_P2_L12p Ribosomal protein P1, P2, and L12p. Ribosomal proteins P1 and P2 are the eukaryotic proteins that are functionally equivalent to bacterial L7/L12. L12p is the archaeal homolog. Unlike other ribosomal proteins, the archaeal L12p and eukaryotic P1 and P2 do not share sequence similarity with their bacterial counterparts. They are part of the ribosomal stalk (called the L7/L12 stalk in bacteria), along with 28S rRNA and the proteins L11 and P0 in eukaryotes (23S rRNA, L11, and L10e in archaea). In bacterial ribosomes, L7/L12 homodimers bind the extended C-terminal helix of L10 to anchor the L7/L12 molecules to the ribosome. Eukaryotic P1/P2 heterodimers and archaeal L12p homodimers are believed to bind the L10 equivalent proteins, eukaryotic P0 and archaeal L10e, in a similar fashion. P1 and P2 (L12p, L7/L12) are the only proteins in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain
Probab=46.19 E-value=58 Score=19.68 Aligned_cols=43 Identities=16% Similarity=0.359 Sum_probs=34.3
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.+++.+++...|..++...+..++..+.. .+.++.+.....
T Consensus 17 ~ta~~I~~IL~aaGveVe~~~~~~~~~aLaG-----k~V~eli~~g~~ 59 (105)
T cd04411 17 LTEDKIKELLSAAGAEIEPERVKLFLSALNG-----KNIDEVISKGKE 59 (105)
T ss_pred CCHHHHHHHHHHcCCCcCHHHHHHHHHHHcC-----CCHHHHHHHHHh
Confidence 9999999999999999998888888877632 466777765543
No 154
>PF01316 Arg_repressor: Arginine repressor, DNA binding domain; InterPro: IPR020900 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes, an example of the latter being Giardia lamblia (Giardia intestinalis) []. The three-enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 10% of total cell protein []. Most prokaryotic arginine deiminase pathways are under the control of a repressor gene, termed ArgR []. This is a negative regulator, and will only release the arginine deiminase operon for expression in the presence of arginine []. The crystal structure of apo-ArgR from Bacillus stearothermophilus has been determined to 2.5A by means of X-ray crystallography []. The protein exists as a hexamer of identical subunits, and is shown to have six DNA-binding domains, clustered around a central oligomeric core when bound to arginine. It predominantly interacts with A.T residues in ARG boxes. This hexameric protein binds DNA at its N terminus to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbour-joining tree, some of these paralogous sequences show long branches and differ significantly from the well-conserved C-terminal region. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0006525 arginine metabolic process; PDB: 1AOY_A 3V4G_A 3LAJ_D 3FHZ_A 3LAP_B 3ERE_D 2P5L_C 1F9N_D 2P5K_A 1B4A_A ....
Probab=45.95 E-value=53 Score=18.31 Aligned_cols=31 Identities=16% Similarity=0.252 Sum_probs=22.3
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
.-+-+||...|...|+.+++.-+.+-+.++.
T Consensus 19 i~sQ~eL~~~L~~~Gi~vTQaTiSRDLkeL~ 49 (70)
T PF01316_consen 19 ISSQEELVELLEEEGIEVTQATISRDLKELG 49 (70)
T ss_dssp --SHHHHHHHHHHTT-T--HHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHcCCCcchhHHHHHHHHcC
Confidence 3456899999999999999999988887764
No 155
>KOG0998|consensus
Probab=45.89 E-value=10 Score=31.17 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=50.2
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|+. .|..+.|.|+..+-...+...| +....+-+++...+..+.|..+..+|...+...
T Consensus 16 ~~~~--~d~~~~G~i~g~~a~~f~~~s~--L~~qvl~qiws~~d~~~~g~l~~q~f~~~lrlv 74 (847)
T KOG0998|consen 16 YFKS--ADPQGDGRITGAEAVAFLSKSG--LPDQVLGQIWSLADSSGKGFLNRQGFYAALRLV 74 (847)
T ss_pred hhhc--cCcccCCcccHHHhhhhhhccc--cchhhhhccccccccccCCccccccccccchHh
Confidence 6888 9999999999999888887766 666778889999999988999999998877644
No 156
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=45.11 E-value=67 Score=23.32 Aligned_cols=33 Identities=27% Similarity=0.499 Sum_probs=17.1
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
.|.||++|-.+.++........+.++.++..++
T Consensus 300 ~G~itReeal~~v~~~d~~~~~~~~~~~~~~lg 332 (343)
T TIGR03573 300 SGRITREEAIELVKEYDGEFPKEDLEYFLKYLG 332 (343)
T ss_pred cCCCCHHHHHHHHHHhcccccHHHHHHHHHHhC
Confidence 566666665555555433333444555555554
No 157
>cd08330 CARD_ASC_NALP1 Caspase activation and recruitment domain found in Human ASC, NALP1, and similar proteins. Caspase activation and recruitment domain (CARD) similar to those found in human ASC (Apoptosis-associated speck-like protein containing a CARD) and NALP1 (CARD7, NLRP1). ASC, an adaptor molecule, and NALP1, a member of the Nod-like receptor (NLR) family, are involved in the assembly of the 'inflammasome', a multiprotein platform, which is responsible for caspase-1 activation and regulation of IL-1beta maturation. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effector Domain). They se
Probab=44.20 E-value=61 Score=18.47 Aligned_cols=49 Identities=16% Similarity=0.220 Sum_probs=33.7
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
.|.|+.++...+.. .+.+.+...+++..... .|...|..|+..+....|
T Consensus 27 ~~Vit~e~~~~I~a---~~T~~~kar~Lld~l~~--kG~~A~~~F~~~L~e~~p 75 (82)
T cd08330 27 KKVITQEQYSEVRA---EKTNQEKMRKLFSFVRS--WGASCKDIFYQILREEEP 75 (82)
T ss_pred CCCCCHHHHHHHHc---CCCcHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCh
Confidence 46677666555543 33556677777777654 678999999999976555
No 158
>PLN02230 phosphoinositide phospholipase C 4
Probab=44.01 E-value=83 Score=25.03 Aligned_cols=59 Identities=8% Similarity=0.163 Sum_probs=42.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCC---CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDD---KISADDLDMMIAEIDS-------DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~---~~s~~~~~~l~~~~d~-------~~~g~I~~~eF~~~l~~ 97 (104)
+|.. |-.++ +.++.++|.+.|..-.. ..+.+++..++..+.. -..+.++++.|..+|..
T Consensus 34 lf~~--~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 34 LFEK--YADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred HHHH--HhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 6777 75443 89999999999997652 3456667777764421 13456999999998875
No 159
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=43.79 E-value=52 Score=19.44 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=32.8
Q ss_pred CCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 46 ~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+.|-||.++...+-. .+.+.+...+++.... ..|.-.|..|+.++..
T Consensus 32 ~~gIlT~~~~e~I~a---~~T~~~k~~~LLdiLp--~RG~~AF~~F~~aL~e 78 (94)
T cd08327 32 QEGILTESHVEEIES---QTTSRRKTMKLLDILP--SRGPKAFHAFLDSLEE 78 (94)
T ss_pred hCCCCCHHHHHHHHc---cCChHHHHHHHHHHHH--hhChhHHHHHHHHHHH
Confidence 467788777666552 3455667777776643 4677899999999975
No 160
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=43.22 E-value=35 Score=15.85 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=10.1
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
++-.++.+.-.-+ |+.+||..++.
T Consensus 4 EW~~Li~eA~~~G---ls~eeir~FL~ 27 (30)
T PF08671_consen 4 EWVELIKEAKESG---LSKEEIREFLE 27 (30)
T ss_dssp HHHHHHHHHHHTT-----HHHHHHHHH
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHH
Confidence 4444554443222 55555555543
No 161
>KOG4004|consensus
Probab=43.08 E-value=9.9 Score=26.03 Aligned_cols=58 Identities=12% Similarity=0.056 Sum_probs=40.8
Q ss_pred hcccccccC-CCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTK-IGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~-~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.|-. +|. -.+|+++..||.-+-.- .-+-+.-+..+|..+|.|.+|.|+.+|+-..+.-
T Consensus 192 qf~q--ld~~p~d~~~sh~el~pl~ap--~ipme~c~~~f~e~cd~~nd~~ial~ew~~c~gi 250 (259)
T KOG4004|consen 192 QFGQ--LDQHPIDGYLSHTELAPLRAP--LIPMEHCTTRFFETCDLDNDKYIALDEWAGCFGI 250 (259)
T ss_pred eecc--ccCCCccccccccccccccCC--cccHHhhchhhhhcccCCCCCceeHHHhhcccCc
Confidence 4555 564 44899999987533211 1223455778999999999999999999877653
No 162
>PHA02105 hypothetical protein
Probab=42.57 E-value=57 Score=17.71 Aligned_cols=49 Identities=4% Similarity=0.013 Sum_probs=32.7
Q ss_pred ceeHHHHHHHHHHh---CCCCCHHHHHHHHHhhCCCC--CCceeHHHHHHHHHh
Q psy13834 49 YITTDVLREILKEL---DDKISADDLDMMIAEIDSDG--SGTVDFDVIQRKILI 97 (104)
Q Consensus 49 ~i~~~el~~~l~~~---g~~~s~~~~~~l~~~~d~~~--~g~I~~~eF~~~l~~ 97 (104)
.++.+++.+++..- ..++..+-++++=..+.... --.++|+||..++-.
T Consensus 4 klt~~~~~~a~~~ndq~eyp~~~e~~~ql~svfsipqi~yvyls~~e~~si~p~ 57 (68)
T PHA02105 4 KLTKEDWESAKYQNDQNEYPVELELFDQLKTVFSIPQIKYVYLSYEEFNSIMPF 57 (68)
T ss_pred eecHHHHHHHHHcCccccccccHHHHHHHHHhccccceEEEEEeHHHhcccccc
Confidence 46788888888753 24666666777666665442 235899999877653
No 163
>PF07862 Nif11: Nitrogen fixation protein of unknown function; InterPro: IPR012903 This domain is found in the cyanobacteria, and the nitrogen-fixing proteobacterium Azotobacter vinelandii and may be involved in nitrogen fixation, but no role has been assigned [].
Probab=42.50 E-value=42 Score=16.88 Aligned_cols=21 Identities=10% Similarity=0.281 Sum_probs=16.7
Q ss_pred eHHHHHHHHHHhCCCCCHHHH
Q psy13834 51 TTDVLREILKELDDKISADDL 71 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~ 71 (104)
+.+++..+.+..|+.+|.++|
T Consensus 28 ~~~e~~~lA~~~Gy~ft~~el 48 (49)
T PF07862_consen 28 NPEEVVALAREAGYDFTEEEL 48 (49)
T ss_pred CHHHHHHHHHHcCCCCCHHHh
Confidence 457888888888988887765
No 164
>TIGR01529 argR_whole arginine repressor. This model includes most members of the arginine-responsive transcriptional regulator family ArgR. This hexameric protein binds DNA at its amino end to repress arginine biosyntheis or activate arginine catabolism. Some species have several ArgR paralogs. In a neighbor-joining tree, some of these paralogous sequences show long branches and differ significantly in an otherwise well-conserved C-terminal region motif GT[VIL][AC]GDDT. These paralogs are excluded from the seed and score in the gray zone of this model, between trusted and noise cutoffs.
Probab=42.44 E-value=59 Score=20.71 Aligned_cols=40 Identities=18% Similarity=0.253 Sum_probs=32.0
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC----CCCCce
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDS----DGSGTV 86 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~----~~~g~I 86 (104)
....+.+|+...++..|..+|..-+.+.+.++.. +++|.-
T Consensus 14 ~~i~tqeeL~~~L~~~G~~vsqaTIsRdL~elglvk~~~~~g~~ 57 (146)
T TIGR01529 14 EKISTQEELVALLKAEGIEVTQATVSRDLRELGAVKVRDEDGSY 57 (146)
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHHHcCCEEEECCCCcE
Confidence 4567889999999999999999999998887753 355643
No 165
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=41.85 E-value=57 Score=17.51 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.3
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHH
Q psy13834 51 TTDVLREILKELDDKISADDLDMM 74 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l 74 (104)
+.+++..+.+..|+.+|.+++...
T Consensus 26 ~~e~~~~lA~~~Gf~ft~~el~~~ 49 (64)
T TIGR03798 26 DPEDRVAIAKEAGFEFTGEDLKEA 49 (64)
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHH
Confidence 468889999999999999988764
No 166
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=40.61 E-value=12 Score=23.02 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=28.4
Q ss_pred CcceeHHHHHHHHHHh--CCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKEL--DDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~--g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.++..|...+...+ ...++..+...++..+..-....+++.+|+..+..
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ 89 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLRELRD 89 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5788877776665544 23344555666666555444445666666665543
No 167
>PRK00034 gatC aspartyl/glutamyl-tRNA amidotransferase subunit C; Reviewed
Probab=40.28 E-value=74 Score=18.34 Aligned_cols=28 Identities=18% Similarity=0.340 Sum_probs=20.7
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
|+.+++.++-+-+.+.++++++.++...
T Consensus 3 i~~e~i~~la~La~l~l~~ee~~~~~~~ 30 (95)
T PRK00034 3 ITREEVKHLAKLARLELSEEELEKFAGQ 30 (95)
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 6778888888877888888876665443
No 168
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=38.97 E-value=27 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.076 Sum_probs=17.9
Q ss_pred hcccccccCCCCcceeHHHHHHHHHH
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKE 61 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~ 61 (104)
...+ ||++++|.|+.-.++-++-.
T Consensus 102 Ll~v--yD~~rtG~I~vls~KvaL~~ 125 (127)
T PF09068_consen 102 LLNV--YDSQRTGKIRVLSFKVALIT 125 (127)
T ss_dssp HHHH--H-TT--SEEEHHHHHHHHHH
T ss_pred HHHH--hCCCCCCeeehhHHHHHHHH
Confidence 7788 99999999999999887754
No 169
>PRK06402 rpl12p 50S ribosomal protein L12P; Reviewed
Probab=38.73 E-value=92 Score=18.96 Aligned_cols=41 Identities=17% Similarity=0.384 Sum_probs=32.5
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHH
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRK 94 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~ 94 (104)
.||.+++.++++..|..+....+..++..+.. ++.++.+..
T Consensus 16 ~it~e~I~~IL~AAGveVee~~~k~~v~aL~G-----kdIeElI~~ 56 (106)
T PRK06402 16 EINEDNLKKVLEAAGVEVDEARVKALVAALED-----VNIEEAIKK 56 (106)
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHHcC-----CCHHHHHHh
Confidence 79999999999999999998888877777632 455666644
No 170
>KOG4403|consensus
Probab=37.68 E-value=1.8e+02 Score=22.50 Aligned_cols=60 Identities=20% Similarity=0.334 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHhchh-------------hhcCCCchh-------hcccccccCCCCcceeHHHHHHHHHHhC-CCCC
Q psy13834 9 GYITTDVLREILKELDDK-------------ISRHPVYQD-------TYRVTKSTKIGNGYITTDVLREILKELD-DKIS 67 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~d~~-------------~~~~~~~~~-------~f~~~~~D~~~~g~i~~~el~~~l~~~g-~~~s 67 (104)
..+.-+-++.|.+.+|.+ +.+.|+... .|+- .+..|+.++|.++++..- .+-+
T Consensus 63 dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~~~~~kr~~~fH~------dD~~ItVedLWeaW~~Sev~nWT 136 (575)
T KOG4403|consen 63 DKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYRDSTRKRSEKFHG------DDKHITVEDLWEAWKESEVHNWT 136 (575)
T ss_pred chhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcccchhhhhhhccC------CccceeHHHHHHHHHhhhhhcch
Confidence 345667788888888877 333343322 4553 367899999999998754 4566
Q ss_pred HHHHHHH
Q psy13834 68 ADDLDMM 74 (104)
Q Consensus 68 ~~~~~~l 74 (104)
.+++-++
T Consensus 137 ~e~tvqW 143 (575)
T KOG4403|consen 137 NERTVQW 143 (575)
T ss_pred HHHHHHH
Confidence 5554443
No 171
>PRK10945 gene expression modulator; Provisional
Probab=37.56 E-value=79 Score=17.87 Aligned_cols=29 Identities=24% Similarity=0.448 Sum_probs=19.7
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
+.+.|.+++......++.+|+..+....|
T Consensus 20 s~eTLEkvie~~~~~L~~~E~~~f~~AaD 48 (72)
T PRK10945 20 TIDTLERVIEKNKYELSDDELAVFYSAAD 48 (72)
T ss_pred cHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence 34567777777777777777776665554
No 172
>COG1460 Uncharacterized protein conserved in archaea [Function unknown]
Probab=37.13 E-value=73 Score=19.70 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=19.2
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
|..|++.++..-+..++++++++++.-
T Consensus 81 t~~ElRsIla~e~~~~s~E~l~~Ildi 107 (114)
T COG1460 81 TPDELRSILAKERVMLSDEELDKILDI 107 (114)
T ss_pred CHHHHHHHHHHccCCCCHHHHHHHHHH
Confidence 456777777777777777777776543
No 173
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=37.07 E-value=37 Score=20.56 Aligned_cols=20 Identities=40% Similarity=0.539 Sum_probs=9.9
Q ss_pred HHhCCCCCHHHHHHHHHhhC
Q psy13834 60 KELDDKISADDLDMMIAEID 79 (104)
Q Consensus 60 ~~~g~~~s~~~~~~l~~~~d 79 (104)
+..|+.+++++++..+..+-
T Consensus 61 k~~gI~vsd~evd~~i~~ia 80 (118)
T PF09312_consen 61 KRLGIKVSDEEVDEAIANIA 80 (118)
T ss_dssp HHCT----HHHHHHHHHHHH
T ss_pred HHcCCCCCHHHHHHHHHHHH
Confidence 34577777777776665553
No 174
>PLN02952 phosphoinositide phospholipase C
Probab=36.94 E-value=1.3e+02 Score=24.08 Aligned_cols=59 Identities=15% Similarity=0.169 Sum_probs=41.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCC--CCCHHHHHHHHHhhCC-------CCCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDD--KISADDLDMMIAEIDS-------DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~--~~s~~~~~~l~~~~d~-------~~~g~I~~~eF~~~l~~ 97 (104)
+|.. |-.+ .+.++.++|...|..... ..+.++...++..+.. -..+.++++.|..+|..
T Consensus 43 lf~~--~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 43 VFCK--FSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred HHHH--HhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccccccccCcCHHHHHHHHcC
Confidence 7887 7543 468999999999997643 3666667777654321 12345899999999874
No 175
>PRK10788 periplasmic folding chaperone; Provisional
Probab=36.14 E-value=1.6e+02 Score=23.09 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHhh
Q psy13834 52 TDVLREILKELDDKISADDLDMMIAEIDS-DGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~~~d~-~~~g~I~~~eF~~~l~~~ 98 (104)
..=+.+..+.+|+.++++++...+..... ..+|..+.+.|..++...
T Consensus 98 ~~Ll~q~A~~lgi~vsd~ev~~~I~~~p~Fq~~G~Fd~~~y~~~L~~~ 145 (623)
T PRK10788 98 EALLDQYARELGLGISDEQVKQAIFATPAFQTDGKFDNNKYLAILNQM 145 (623)
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHHHhCcccccCCCcCHHHHHHHHHHc
Confidence 33345555668999999999998887531 246888888888877654
No 176
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=35.98 E-value=95 Score=18.60 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 54 VLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 54 el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
.+...+...|+++|+++++.++...
T Consensus 76 ~v~~~L~~~gi~~t~~~i~~~IEaA 100 (108)
T PF09682_consen 76 YVKERLKKKGIKVTDEQIEGAIEAA 100 (108)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 5667777889999999998877543
No 177
>KOG2351|consensus
Probab=34.91 E-value=56 Score=20.62 Aligned_cols=38 Identities=16% Similarity=0.400 Sum_probs=24.9
Q ss_pred ccCCCCccee---HHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 42 STKIGNGYIT---TDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 42 ~D~~~~g~i~---~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
|....-|.+. .+|-+.++.+++.+++++++++++..+.
T Consensus 88 FE~A~lgnLcpetaEEAkaLvPSL~nkidD~~le~iL~dls 128 (134)
T KOG2351|consen 88 FEVAQLGNLCPETAEEAKALVPSLENKIDDDELEQILKDLS 128 (134)
T ss_pred hhHHHHhccCcccHHHHHHhccccccccCHHHHHHHHHHHH
Confidence 4433444443 4566777777888888888888877653
No 178
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=34.84 E-value=1e+02 Score=21.67 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=30.8
Q ss_pred CcceeHHHHHHHHHHhC--CCCCHHH---HHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 47 NGYITTDVLREILKELD--DKISADD---LDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g--~~~s~~~---~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|.++..|+. +.+.+- ..++.++ +..+|..- .....++++|+..+...
T Consensus 69 DG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~lf~~~---k~~~~~l~~~~~~~~~~ 121 (267)
T PRK09430 69 KGRVTEADIR-IASQLMDRMNLHGEARRAAQQAFREG---KEPDFPLREKLRQFRSV 121 (267)
T ss_pred CCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHh---cccCCCHHHHHHHHHHH
Confidence 6899999987 444431 3466666 44455544 33448899998887654
No 179
>COG5562 Phage envelope protein [General function prediction only]
Probab=34.18 E-value=29 Score=22.10 Aligned_cols=46 Identities=11% Similarity=0.268 Sum_probs=27.8
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
+|.|.....+.+..-. .... -..+......+..|+.+|+||+..+.
T Consensus 54 ~~~Il~~g~k~~~~V~-~~~n---~~~i~~al~~~qsGqttF~ef~~~la 99 (137)
T COG5562 54 DGVILIKGVKKVVGVA-EVFN---TTLIKTALRRHQSGQTTFEEFCSALA 99 (137)
T ss_pred CCEEEeecccccccee-cccC---HHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 5666666655554321 1122 23344455566789999999999875
No 180
>PF07128 DUF1380: Protein of unknown function (DUF1380); InterPro: IPR009811 This family consists of several hypothetical bacterial proteins of around 140 residues in length. Members of this family seem to be specific to Enterobacteria. The function of this family is unknown.
Probab=33.57 E-value=83 Score=20.15 Aligned_cols=30 Identities=17% Similarity=0.384 Sum_probs=23.0
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhCC
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEIDS 80 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d~ 80 (104)
|.++++.+...+..++|++++..++..++.
T Consensus 28 T~eDV~~~a~gme~~lTd~E~~aVL~~I~~ 57 (139)
T PF07128_consen 28 TREDVRALADGMEYNLTDDEARAVLARIGD 57 (139)
T ss_pred cHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Confidence 467777776666778888888888887765
No 181
>PF06648 DUF1160: Protein of unknown function (DUF1160); InterPro: IPR010594 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf75; it is a family of uncharacterised viral proteins.
Probab=33.55 E-value=46 Score=20.78 Aligned_cols=46 Identities=9% Similarity=0.177 Sum_probs=31.8
Q ss_pred hhcCCCchhhcccccccCCCCcceeHHHHHHHHHHh-CCCCCHHHHHHHHHhhC
Q psy13834 27 ISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKEL-DDKISADDLDMMIAEID 79 (104)
Q Consensus 27 ~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~-g~~~s~~~~~~l~~~~d 79 (104)
+..++.. +|++ |- .+.|+.+.+..++.+. |..+|..+++=+...+.
T Consensus 35 f~~Kl~~--Il~m--Fl---~~eid~e~~y~l~~~~d~~~LT~~Qi~Yl~~~~~ 81 (122)
T PF06648_consen 35 FLDKLIK--ILKM--FL---NDEIDVEDMYNLFGAVDGLKLTRSQIDYLYNRVY 81 (122)
T ss_pred HHHHHHH--HHHH--HH---hCCCCHHHHHHHHhcccHhhcCHHHHHHHHHHHH
Confidence 4444444 7777 76 4678899999999876 46888887765544443
No 182
>PF06384 ICAT: Beta-catenin-interacting protein ICAT; InterPro: IPR009428 This family consists of several eukaryotic beta-catenin-interacting (ICAT) proteins. Beta-catenin is a multifunctional protein involved in both cell adhesion and transcriptional activation. Transcription mediated by the beta-catenin/Tcf complex is involved in embryological development and is upregulated in various cancers. ICAT selectively inhibits beta-catenin/Tcf binding in vivo, without disrupting beta-catenin/cadherin interactions [].; GO: 0008013 beta-catenin binding; PDB: 1LUJ_B 1T08_B 1M1E_B.
Probab=33.30 E-value=54 Score=18.84 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=12.0
Q ss_pred HHHHHHHHhCCCCCHHHHH
Q psy13834 54 VLREILKELDDKISADDLD 72 (104)
Q Consensus 54 el~~~l~~~g~~~s~~~~~ 72 (104)
|+..+++.+|.+++.+|..
T Consensus 21 EIL~ALrkLge~Ls~eE~~ 39 (78)
T PF06384_consen 21 EILTALRKLGEKLSPEEEA 39 (78)
T ss_dssp HHHHHHHHTT----HHHHH
T ss_pred HHHHHHHHhcCCCCHHHHH
Confidence 5778899999999988754
No 183
>cd08807 CARD_CARD10_CARMA3 Caspase activation and recruitment domain of CARD10-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD10, also known as CARMA3 (caspase recruitment domain-containing membrane-associated guanylate kinase protein 3) or BIMP1. The CARMA3-BCL10-MALT1 signalosome plays a role in the GPCR-induced NF-kB activation. CARMA3 is more widely expressed than CARMA1, which is found only in hematopoietic cells. In endothelial and smooth muscle cells, CARMA3-mediated NF-kB activation induces pro-inflammatory signals within the vasculature and is a key factor in atherogenesis. In bronchial epithelial cells, CARMA3-mediated NF-kB signaling is important for the development of allergic airway inflammation. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains fo
Probab=31.97 E-value=87 Score=18.31 Aligned_cols=52 Identities=13% Similarity=0.219 Sum_probs=34.0
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCCC
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAPE 101 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~~ 101 (104)
|-|+..+..+++.......+...+..++.-.. ..|.=.|.-|++.+...+|+
T Consensus 29 ~VL~~~deEEI~~~~~~~~~~~k~~~LLDIL~--trG~~gf~aFLeSLE~~yp~ 80 (86)
T cd08807 29 RVIDEQDEEEVLNSYRFPCRINRTGRLMDILR--GRGKRGYEAFLEALEFYYPE 80 (86)
T ss_pred CCCChhhHHHHHhccchhhHHHHHHHHHHHHH--hcCchHHHHHHHHHHhhhHH
Confidence 56666777777766555556556666655543 35677788888888765553
No 184
>KOG4347|consensus
Probab=31.85 E-value=75 Score=25.54 Aligned_cols=50 Identities=22% Similarity=0.280 Sum_probs=35.8
Q ss_pred eeHHHHHHHHHHhCC-CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 50 ITTDVLREILKELDD-KISADDLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 50 i~~~el~~~l~~~g~-~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
|+...+..+++.+-. ..+..-+.++|...|.+.+|.++|.+++..+..+.
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~ 585 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILK 585 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHH
Confidence 455556666655432 23344567899999999999999999999887653
No 185
>PTZ00315 2'-phosphotransferase; Provisional
Probab=31.13 E-value=1.4e+02 Score=23.71 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=31.2
Q ss_pred ccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
+..+.+|++..++|.+....-+..++.+.+.+++..-+
T Consensus 398 L~ld~~Gwv~vd~LL~~~~~~~~~~t~e~i~~VV~~nd 435 (582)
T PTZ00315 398 VPITSNGYVLLDDILRQPPMRNDPVSVQDVARVVRDSD 435 (582)
T ss_pred CCcCCCCCEEHHHHHHHHHhcCCCCCHHHHHHHHHcCC
Confidence 45678999999999999887677789899998887544
No 186
>COG1508 RpoN DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog [Transcription]
Probab=31.03 E-value=1.6e+02 Score=22.56 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=38.6
Q ss_pred cCCCCcceeHHHHHHHHHHhCCCCCHHHHHHH---HHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 43 TKIGNGYITTDVLREILKELDDKISADDLDMM---IAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 43 D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l---~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
-.|.+|++..+ +..+...++. ++.+++.++ ++.++.-|-|.-++.|.+..-.+..
T Consensus 119 ~Ldd~GYl~~~-le~~~~~l~~-~~~~eve~vl~~iQ~ldP~GV~Ar~l~EcL~lQL~~~ 176 (444)
T COG1508 119 ALDDEGYLTES-LEEIAELLGS-VDEEEVEKVLARIQSLDPAGVGARDLRECLLLQLERR 176 (444)
T ss_pred hcCcCCCcccC-HHHHHHhccc-ccHHHHHHHHHHHhcCCCCccccCcHHHHHHHHHHhc
Confidence 35678988877 6666666654 666777665 5666777888889998887666543
No 187
>PF02037 SAP: SAP domain; InterPro: IPR003034 The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA binding domain found in diverse nuclear proteins involved in chromosomal organisation [], including in apoptosis []. In yeast, SAP is found in the most distal N-terminal region of E3 SUMO-protein ligase SIZ1, where it is involved in nuclear localization [].; GO: 0003676 nucleic acid binding; PDB: 2RNN_A 1JEQ_A 2KW9_A 2KVU_A 2DO1_A 1ZBU_B 1ZBH_A 2DO5_A 2RNO_A 1H1J_S ....
Probab=30.98 E-value=58 Score=15.31 Aligned_cols=19 Identities=37% Similarity=0.265 Sum_probs=12.9
Q ss_pred ceeHHHHHHHHHHhCCCCC
Q psy13834 49 YITTDVLREILKELDDKIS 67 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s 67 (104)
.++..+|+..++..|.+.+
T Consensus 3 ~l~v~eLk~~l~~~gL~~~ 21 (35)
T PF02037_consen 3 KLTVAELKEELKERGLSTS 21 (35)
T ss_dssp TSHHHHHHHHHHHTTS-ST
T ss_pred cCcHHHHHHHHHHCCCCCC
Confidence 3566788888888776554
No 188
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=30.77 E-value=51 Score=16.52 Aligned_cols=24 Identities=17% Similarity=0.346 Sum_probs=16.0
Q ss_pred hccccccc-CC-CCcceeHHHHHHHHHH
Q psy13834 36 TYRVTKST-KI-GNGYITTDVLREILKE 61 (104)
Q Consensus 36 ~f~~~~~D-~~-~~g~i~~~el~~~l~~ 61 (104)
+|+. |- .+ ....++..||+.++..
T Consensus 11 vFhk--Ya~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 11 VFHK--YAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHH--HHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHH--HhccCCCCCeEcHHHHHHHHHH
Confidence 5666 64 22 3457888888888874
No 189
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=30.12 E-value=1.2e+02 Score=17.61 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=31.3
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
.|.+|.++...+- . .+.+.+...+++.... ..|--.|..|+.++..
T Consensus 32 ~gvlt~~~~~~I~-~--~~t~~~k~~~Lld~L~--~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 32 KDILTDSMAESIM-A--KPTSFSQNVALLNLLP--KRGPRAFSAFCEALRE 77 (90)
T ss_pred cCCCCHHHHHHHH-c--CCCcHHHHHHHHHHHH--HhChhHHHHHHHHHHh
Confidence 5777777655544 2 3355666677776654 3567899999999975
No 190
>PRK10391 oriC-binding nucleoid-associated protein; Provisional
Probab=30.04 E-value=89 Score=17.57 Aligned_cols=29 Identities=14% Similarity=0.323 Sum_probs=19.9
Q ss_pred eHHHHHHHHHHhCCCCCH-HHHHHHHHhhC
Q psy13834 51 TTDVLREILKELDDKISA-DDLDMMIAEID 79 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~-~~~~~l~~~~d 79 (104)
+.+.|.+++..+...+++ +++..+....|
T Consensus 15 s~eTLEkv~e~~~y~L~~~~e~~~f~~AaD 44 (71)
T PRK10391 15 SLESLEKLFDHLNYTLTDDQEIINMYRAAD 44 (71)
T ss_pred cHHHHHHHHHHhhcccCCHHHHHHHHHHHH
Confidence 456677888887777776 67776655554
No 191
>PF13331 DUF4093: Domain of unknown function (DUF4093)
Probab=29.83 E-value=1.1e+02 Score=17.81 Aligned_cols=37 Identities=16% Similarity=0.094 Sum_probs=19.3
Q ss_pred HHHHHHHH-HhCCCCC-HHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 53 DVLREILK-ELDDKIS-ADDLDMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 53 ~el~~~l~-~~g~~~s-~~~~~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
.+.+..+. .+|++.. ..++-+-++.+. |+++||...+
T Consensus 48 ~~rR~~l~~~L~iGy~N~KqllkrLN~f~------it~~e~~~al 86 (87)
T PF13331_consen 48 KERREKLGEYLGIGYGNAKQLLKRLNMFG------ITREEFEEAL 86 (87)
T ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHcC------CCHHHHHHHh
Confidence 34444443 4555433 344444555553 7777777664
No 192
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=29.49 E-value=2e+02 Score=20.09 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=37.6
Q ss_pred CcceeHHHHHHHHHHhCC------CCCHHHHHHHHHhhCCCCC-CceeHHHHHHH
Q psy13834 47 NGYITTDVLREILKELDD------KISADDLDMMIAEIDSDGS-GTVDFDVIQRK 94 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~------~~s~~~~~~l~~~~d~~~~-g~I~~~eF~~~ 94 (104)
.|.+..+.+.+++..++. .+..++-..++..+..+-| +.|+++|-+..
T Consensus 168 ~g~~r~d~v~~i~~~l~~eklifEAp~k~~q~~~I~~~G~~VNL~NI~~~evi~L 222 (237)
T TIGR03849 168 KGNVKEDELDVLAENVDINKVIFEAPQKNQQVEFILKFGPDVNLGNIPPEEVISL 222 (237)
T ss_pred CCCCchHHHHHHHhhCChhcEEEECCCHHHHHHHHHHhCCCcccccCCHHHHHHH
Confidence 478888889999998763 3455666778999999988 78999887763
No 193
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=29.40 E-value=1.3e+02 Score=18.80 Aligned_cols=50 Identities=10% Similarity=0.310 Sum_probs=36.2
Q ss_pred CCCcceeHHHHHHHHHHhC---------CCCCHHHHHHHHHhhCCCCCC-ceeHHHHHHH
Q psy13834 45 IGNGYITTDVLREILKELD---------DKISADDLDMMIAEIDSDGSG-TVDFDVIQRK 94 (104)
Q Consensus 45 ~~~g~i~~~el~~~l~~~g---------~~~s~~~~~~l~~~~d~~~~g-~I~~~eF~~~ 94 (104)
-|+..||.+||.+++..-. +.++.+++.++...+.....+ .++..|-+..
T Consensus 79 lGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 79 LGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEKAPKGEKLTLAEALRA 138 (141)
T ss_pred ECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHhccccCCCCHHHHHHH
Confidence 3567889999999888632 246788888888888775554 4888876654
No 194
>PRK09389 (R)-citramalate synthase; Provisional
Probab=29.32 E-value=1.4e+02 Score=23.04 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCC--CCCCceeHHHHHHHHHhh
Q psy13834 52 TDVLREILKELDDKISADDLDMMIAEIDS--DGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~~~d~--~~~g~I~~~eF~~~l~~~ 98 (104)
...+...++.+|+.++++++.+++..+.. +....++-+|+..++...
T Consensus 320 ~~~v~~~l~~~g~~~~~~~~~~~~~~vk~~~~~~~~~~~~el~~l~~~~ 368 (488)
T PRK09389 320 RAALKAALKEMGIEVSDDQLNEIVSRVKELGDRGKRVTDADLLAIAEDV 368 (488)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Confidence 44577888889999999888888776643 334569999988887654
No 195
>PRK00441 argR arginine repressor; Provisional
Probab=29.31 E-value=1.2e+02 Score=19.35 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=32.4
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC----CCCCCceeH
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEID----SDGSGTVDF 88 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d----~~~~g~I~~ 88 (104)
.+..+.++|.+.++..|+.+|+.-+.+-+.++. .+.+|..-|
T Consensus 16 ~~~~~q~eL~~~L~~~G~~vSqaTisRDl~~L~lvKv~~~~G~~~Y 61 (149)
T PRK00441 16 KEIETQEELAEELKKMGFDVTQATVSRDIKELKLIKVLSNDGKYKY 61 (149)
T ss_pred cCCCcHHHHHHHHHhcCCCcCHHHHHHHHHHcCcEEeECCCCCEEE
Confidence 567788999999999999999998888777664 245665333
No 196
>PF08044 DUF1707: Domain of unknown function (DUF1707); InterPro: IPR012551 This domain is found in a variety of actinomycetales proteins. All of the proteins containing this domain are hypothetical and probably membrane bound or associated. Currently, it is unclear to the function of this domain.
Probab=28.88 E-value=90 Score=16.31 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=21.3
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIA 76 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~ 76 (104)
.|.|+..||..-+...-..-+..++..++.
T Consensus 21 ~GrL~~~Ef~~R~~~a~~A~t~~eL~~l~~ 50 (53)
T PF08044_consen 21 EGRLSLDEFDERLDAAYAARTRGELDALFA 50 (53)
T ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHc
Confidence 588888888877776655566666666654
No 197
>cd08785 CARD_CARD9-like Caspase activation and recruitment domain of CARD9 and related proteins. Caspase activation and recruitment domain (CARD) found in CARD9, CARD14 (CARMA2), CARD10 (CARMA3), CARD11 (CARMA1) and BCL10. BCL10 (B-cell lymphoma 10), together with Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), are integral components of the CBM signalosome. They associate with CARD9 to form M-CBM (CBM complex in myeloid immune cells), and with CARD11 to form L-CBM (CBM complex in lymphoid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. BCL10/Malt1 also associates with CARD10, which is more widely expressed and is not restricted to hematopoietic cells, to play a role in GPCR-induced NF-kB activation. CARD14 has also been shown to associate with BCL10. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inf
Probab=28.81 E-value=1.2e+02 Score=17.51 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=31.9
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
.|-++.++...+...-......+...+++..... .|.=.|.-|++.+...+|
T Consensus 28 ~~VLt~~d~EeI~~~~t~~~r~~ka~~LLdiL~~--rG~~Af~~F~~aL~~~yp 79 (86)
T cd08785 28 CKVLDEQDEEEVLSSPRLPIRANRTGRLLDILAT--RGKRGYVAFLESLEFYYP 79 (86)
T ss_pred cCCCCHHHHHHHhCCCccccHHHHHHHHHHHHHh--cCcchHHHHHHHHHHhCH
Confidence 4677777766666532222233556666665543 466778889998875555
No 198
>smart00513 SAP Putative DNA-binding (bihelical) motif predicted to be involved in chromosomal organisation.
Probab=28.73 E-value=73 Score=14.80 Aligned_cols=19 Identities=21% Similarity=0.179 Sum_probs=13.5
Q ss_pred ceeHHHHHHHHHHhCCCCC
Q psy13834 49 YITTDVLREILKELDDKIS 67 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s 67 (104)
.++..+|+..++..|.+.+
T Consensus 3 ~l~~~~Lk~~l~~~gl~~~ 21 (35)
T smart00513 3 KLKVSELKDELKKRGLSTS 21 (35)
T ss_pred cCcHHHHHHHHHHcCCCCC
Confidence 4567788888888776544
No 199
>cd08809 CARD_CARD9 Caspase activation and recruitment domain of CARD9-like proteins. Caspase activation and recruitment domain (CARD) similar to that found in CARD9. CARD9 is a central regulator of innate immunity and is highly expressed in dendritic cells and macrophages. Together with BCL10 (B-cell lymphoma 10) and Malt1 (mucosa-associated lymphoid tissue-lymphoma-translocation gene 1), it forms the M-CBM signalosome (the CBM complex in myeloid immune cells), which mediates activation of NF-kB and MAPK by ITAM-coupled receptors expressed on immune cells. CARD9 associates with BCL10 via a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating wi
Probab=28.67 E-value=1.1e+02 Score=17.97 Aligned_cols=52 Identities=10% Similarity=0.249 Sum_probs=34.7
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
.|-|+..+..+++.......+...+.+++.-.. ..|.=.|.-|+..+...+|
T Consensus 28 ~~Vl~~~deEeI~~~~~~~~~~~kvg~LLDIL~--~rG~~~f~aFLeSLE~~yP 79 (86)
T cd08809 28 CKVLNSDDEEQVLNDPSLVIRKRKVGVLLDILQ--RTGLKGYEAFLESLELYYP 79 (86)
T ss_pred hCCCChhhHHHHHcCcccchHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHH
Confidence 467777788888776555566666666665553 3566778888887775444
No 200
>KOG4070|consensus
Probab=28.60 E-value=33 Score=22.47 Aligned_cols=50 Identities=12% Similarity=0.322 Sum_probs=26.2
Q ss_pred ceeHHHHHHHHHHhC----CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 49 YITTDVLREILKELD----DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 49 ~i~~~el~~~l~~~g----~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.++-..+.++++.++ ..++.-.+.-.|.......-+.|+|++|...|..+
T Consensus 33 em~gkn~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~~~~tf~~fkkal~el 86 (180)
T KOG4070|consen 33 EMNGKNWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKARTITFEEFKKALEEL 86 (180)
T ss_pred ccccccHHHHHhhcCcccCCcccccccceeeeeccccccccccHHHHHHHHHHH
Confidence 355555666666553 23333334444555555555567777775555443
No 201
>KOG4301|consensus
Probab=28.53 E-value=74 Score=23.70 Aligned_cols=62 Identities=16% Similarity=0.117 Sum_probs=41.0
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
+|..-.||..+.|.++....+-++..+.-+--.+.+. .+-....|.+|.+.+-.|..++...
T Consensus 113 aflLaA~ds~~~g~~~vfavkialatlc~gk~~dklr-yIfs~isds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 113 AFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLR-YIFSLISDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHHHhhcCccCCCCceeecchhhhhhhccchHHHHHH-HHHHHHccchHHHHHHHHHHHHHHH
Confidence 4444338999999999998888888764333334444 4444456778887766666666544
No 202
>PF13099 DUF3944: Domain of unknown function (DUF3944)
Probab=28.35 E-value=80 Score=15.24 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHhhCCCCCCce
Q psy13834 66 ISADDLDMMIAEIDSDGSGTV 86 (104)
Q Consensus 66 ~s~~~~~~l~~~~d~~~~g~I 86 (104)
.+++++..++.....+.+|..
T Consensus 13 cs~edL~~L~~~Lt~dkdG~~ 33 (35)
T PF13099_consen 13 CSNEDLKDLVDILTHDKDGKK 33 (35)
T ss_pred CCHHHHHHHHHHHhcCCCCCc
Confidence 567788888888777777754
No 203
>PF03874 RNA_pol_Rpb4: RNA polymerase Rpb4; InterPro: IPR005574 The eukaryotic RNA polymerase subunits RPB4 and RPB7 form a heterodimer that reversibly associates with the RNA polymerase II core. Archaeal cells contain a single RNAP made up of about 12 subunits, displaying considerable homology to the eukaryotic RNAPII subunits. The RPB4 and RPB7 homologs are called subunits F and E, respectively, and have been shown to form a stable heterodimer. While the RPB7 homologue is reasonably well conserved, the similarity between the eukaryotic RPB4 and the archaeal F subunit is barely detectable [].; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3AYH_A 3H3V_E 4A3C_D 3PO3_D 3HOX_D 2R92_D 3HOU_D 1Y77_D 2R7Z_D 3QT1_D ....
Probab=28.27 E-value=76 Score=18.97 Aligned_cols=22 Identities=14% Similarity=0.273 Sum_probs=8.3
Q ss_pred HHHHHHHHHhC-CCCCHHHHHHH
Q psy13834 53 DVLREILKELD-DKISADDLDMM 74 (104)
Q Consensus 53 ~el~~~l~~~g-~~~s~~~~~~l 74 (104)
+.+..++..+. .+++..++-++
T Consensus 57 e~~~~l~~~L~~~~L~~~E~~qi 79 (117)
T PF03874_consen 57 ESIKELREELKKFGLTEFEILQI 79 (117)
T ss_dssp HHHHHHHHHHTTSTS-HHHHHHH
T ss_pred HHHHHHHHHHhcccCCHHHHHHH
Confidence 33444444332 23444444443
No 204
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=28.21 E-value=36 Score=19.77 Aligned_cols=16 Identities=31% Similarity=0.320 Sum_probs=8.5
Q ss_pred CcceeHHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKEL 62 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~ 62 (104)
+|.++..|...+...+
T Consensus 16 DG~v~~~E~~~i~~~l 31 (111)
T cd07176 16 DGDIDDAELQAIEALL 31 (111)
T ss_pred ccCCCHHHHHHHHHHH
Confidence 4556655555554443
No 205
>PRK08181 transposase; Validated
Probab=28.06 E-value=1.5e+02 Score=20.82 Aligned_cols=48 Identities=15% Similarity=-0.012 Sum_probs=31.9
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
...|+.+.+...++.+..+--.+.+..+..... .+..+|.||+..+..
T Consensus 4 ~~~~~~~~l~~~l~~LkL~~~~~~~~~~~~~a~---~~~~~~~e~L~~ll~ 51 (269)
T PRK08181 4 TNVIDEARLGLLLNELRLPTIKTLWPQFAEQAD---KEGWPAARFLAAIAE 51 (269)
T ss_pred CCcccHHHHHHHHHHcCchHHHHHHHHHHHHHh---hcCCCHHHHHHHHHH
Confidence 456777888888988875433344444444333 355899999988764
No 206
>KOG1265|consensus
Probab=27.47 E-value=1.9e+02 Score=24.56 Aligned_cols=60 Identities=15% Similarity=0.252 Sum_probs=49.4
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh----------CCCCCHHHHHHHHHhhCCC----CCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL----------DDKISADDLDMMIAEIDSD----GSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~----------g~~~s~~~~~~l~~~~d~~----~~g~I~~~eF~~~l~~ 97 (104)
+|.. +.-+..-++|.++|..+++.- -..++...+..++..+..+ ..|+++-+-|+.++..
T Consensus 226 iF~k--i~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 226 IFRK--ISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred HHHH--hccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchhhhhccccchhhhHHHhhC
Confidence 8888 777777899999999999852 2356778899999988765 4789999999999875
No 207
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=27.43 E-value=1.1e+02 Score=16.40 Aligned_cols=15 Identities=13% Similarity=0.348 Sum_probs=5.2
Q ss_pred CCCCHHHHHHHHHhh
Q psy13834 64 DKISADDLDMMIAEI 78 (104)
Q Consensus 64 ~~~s~~~~~~l~~~~ 78 (104)
..++.+++..++..+
T Consensus 13 ~~Ls~~e~~~~~~~i 27 (66)
T PF02885_consen 13 EDLSREEAKAAFDAI 27 (66)
T ss_dssp ----HHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 344444444444444
No 208
>PF09061 Stirrup: Stirrup; InterPro: IPR015146 The Stirrup domain, found in the prokaryotic protein ribonucleotide reductase, has a molecular mass of 9 kDa and is folded into an alpha/beta structure. It allows for binding of the reductase to DNA via electrostatic interactions, since it has a predominance of positive charges distributed on its surface []. ; GO: 0016788 hydrolase activity, acting on ester bonds; PDB: 1DQ3_A.
Probab=27.40 E-value=46 Score=18.52 Aligned_cols=31 Identities=19% Similarity=0.417 Sum_probs=21.8
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
.|.++..-|.++++.+-.....+++.+|+..
T Consensus 47 rgrvskavlvkmlrkly~~tk~e~vkrmlhl 77 (79)
T PF09061_consen 47 RGRVSKAVLVKMLRKLYEATKNEEVKRMLHL 77 (79)
T ss_dssp HS-EEHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHhhchHHHHHHHHh
Confidence 5788999999999988655556777777653
No 209
>PF14069 SpoVIF: Stage VI sporulation protein F
Probab=27.21 E-value=1.3e+02 Score=17.25 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=31.9
Q ss_pred HHHHHHHHHH----hCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 52 TDVLREILKE----LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 52 ~~el~~~l~~----~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
...++++++. ++.++|.+..++++...-.++- ..++..+..++.
T Consensus 30 E~~vR~lIk~vs~~an~~Vs~~~ed~IV~~I~~~~~-p~d~~~l~Km~~ 77 (79)
T PF14069_consen 30 EKKVRQLIKQVSQIANKPVSKEQEDQIVQAIINQKI-PNDMNHLMKMMN 77 (79)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhCCC-CcCHHHHHHHHc
Confidence 3556777764 4789999988888888876655 677777776664
No 210
>PF13624 SurA_N_3: SurA N-terminal domain; PDB: 3NRK_A.
Probab=26.95 E-value=85 Score=19.44 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=23.3
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCC-CCCCceeHHHHHHHHHh
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAEIDS-DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~-~~~g~I~~~eF~~~l~~ 97 (104)
|...-+.+.-+..|..+|+++++..+..... ..+|..+-+.|..++..
T Consensus 84 I~~~ll~q~A~~~gi~vsd~ev~~~i~~~~~f~~~g~~~~~~f~~~L~~ 132 (154)
T PF13624_consen 84 IDQKLLLQEAKKLGISVSDAEVDDAIKQIPAFQENGKFDKEAFEEFLKQ 132 (154)
T ss_dssp HHHHHHHHHHHHTT----HHHHHHHHHH--HHHHH----HHHHHHHHH-
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 3334445555667899999999988877321 11366666777776654
No 211
>cd05831 Ribosomal_P1 Ribosomal protein P1. This subfamily represents the eukaryotic large ribosomal protein P1. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P1 is located in the L12 stalk, with proteins P2, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers) and bacteria may have four or six copies (two or three homodimers), depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2A, and
Probab=26.93 E-value=1.5e+02 Score=17.78 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=31.9
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHH
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKI 95 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l 95 (104)
.-.+|.+++..+++..|..+....+..++..+.. .+.++++...
T Consensus 15 ~~~~Tae~I~~ilkAaGveve~~~~~~f~~~L~g-----k~i~elIa~~ 58 (103)
T cd05831 15 GIEITADNINALLKAAGVNVEPYWPGLFAKALEG-----KDIKDLLSNV 58 (103)
T ss_pred CCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHcC-----CCHHHHhhcc
Confidence 3479999999999999998887666655555532 5567666544
No 212
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=26.41 E-value=1.3e+02 Score=17.95 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=32.1
Q ss_pred eeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCC---CceeHHHHHHHHHhhCC
Q psy13834 50 ITTDVLREILKELDDKISADDLDMMIAEIDSDGS---GTVDFDVIQRKILILAP 100 (104)
Q Consensus 50 i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~---g~I~~~eF~~~l~~~~~ 100 (104)
+...+..-++.-+...+|++|+.++...+-..+. ..++...++.-+....|
T Consensus 20 vP~~Dy~PLlALL~r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P 73 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELP 73 (96)
T ss_dssp B-HHHHHHHHHHHTTTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S
T ss_pred CCCCccHHHHHHhcccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCc
Confidence 5566666677777788999999988777633322 45666666666655444
No 213
>COG5296 Transcription factor involved in TATA site selection and in elongation by RNA polymerase II [Transcription]
Probab=26.24 E-value=2.3e+02 Score=21.69 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=19.7
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 54 VLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 54 el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
.+.+++..+|..+|+.++.+|++.-+
T Consensus 329 k~~~l~d~~~~~LSdkeis~~V~~k~ 354 (521)
T COG5296 329 KYDKLVDTMGRRLSDKEISKMVACKD 354 (521)
T ss_pred HHHHHHHHhCCcCchhHHHHHHHHHH
Confidence 35566667788899999998887664
No 214
>KOG3555|consensus
Probab=25.94 E-value=18 Score=26.86 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=42.9
Q ss_pred cCCCchhhcccccccCCCCcceeHHHHHHHHHHhC---CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 29 RHPVYQDTYRVTKSTKIGNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 29 ~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g---~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.+++. .|+. .=.++++......+..+-..+. .++-..++-.||..+|.+.++.++-.|...+.+
T Consensus 211 ~RL~d--WF~~--lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l 277 (434)
T KOG3555|consen 211 NRLRD--WFKA--LHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLLDQSELRAIEL 277 (434)
T ss_pred HHHHH--HHHH--HHhhhhccCcchhhcccccccccccCcchhhhhhhhhhccccccccccCHHHhhhhhc
Confidence 34444 6766 6555556555555554433222 245567889999999999999999998877654
No 215
>PLN02223 phosphoinositide phospholipase C
Probab=25.90 E-value=1.9e+02 Score=22.84 Aligned_cols=59 Identities=14% Similarity=0.209 Sum_probs=41.3
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHh----C-CCCCHHHHHHHHHhhCCC--------CCCceeHHHHHHHHHh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKEL----D-DKISADDLDMMIAEIDSD--------GSGTVDFDVIQRKILI 97 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~----g-~~~s~~~~~~l~~~~d~~--------~~g~I~~~eF~~~l~~ 97 (104)
+|.. |- .+.|.++.+.|.+.+.-+ | ...+.++.+.++..+-.. ..+.++.+.|..+|..
T Consensus 21 ~f~~--~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 21 FFGN--EF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred HHHH--hh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 6776 63 567899999999988333 2 356667777777655322 2356999999999875
No 216
>smart00657 RPOL4c DNA-directed RNA-polymerase II subunit.
Probab=25.74 E-value=1.4e+02 Score=18.20 Aligned_cols=10 Identities=20% Similarity=0.338 Sum_probs=4.4
Q ss_pred CHHHHHHHHH
Q psy13834 12 TTDVLREILK 21 (104)
Q Consensus 12 ~~~~~~~l~~ 21 (104)
+..|+..++.
T Consensus 10 ~n~Ev~~ll~ 19 (118)
T smart00657 10 TNSEVQLLLE 19 (118)
T ss_pred HHHHHHHHHH
Confidence 3344444444
No 217
>PF06854 Phage_Gp15: Bacteriophage Gp15 protein; InterPro: IPR009660 This entry describes Gp15 from Bacteriophage A500 (Listeria phage A500), related proteins in other bacteriophage, and prophage regions of bacterial genomes. The function is unknown.
Probab=25.71 E-value=61 Score=21.55 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=17.8
Q ss_pred CCCceeHHHHHHHHHhhCCCC
Q psy13834 82 GSGTVDFDVIQRKILILAPET 102 (104)
Q Consensus 82 ~~g~I~~~eF~~~l~~~~~~~ 102 (104)
..|.+.|++|+.++..+..+|
T Consensus 129 ~~~~lhW~~F~aL~~~L~~~t 149 (183)
T PF06854_consen 129 EQGYLHWWKFKALFNGLSEDT 149 (183)
T ss_pred hcccCcHHHHHHHHhcCCCCC
Confidence 367899999999999887765
No 218
>KOG0169|consensus
Probab=25.55 E-value=2.8e+02 Score=22.88 Aligned_cols=57 Identities=12% Similarity=0.175 Sum_probs=37.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
.|+- .+..+++.+...++.+....++..+ ++..+|..+..+ .+.++..+++.++...
T Consensus 177 ~f~e--~~~~~~~k~~~~~~~~~~~~~~~rp---ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~ 233 (746)
T KOG0169|consen 177 LFKE--SDNSQTGKLEEEEFVKFRKELTKRP---EVYFLFVQYSHG-KEYLSTDDLLRFLEEE 233 (746)
T ss_pred HHHH--HHhhccceehHHHHHHHHHhhccCc---hHHHHHHHHhCC-CCccCHHHHHHHHHHh
Confidence 6666 6777888888888888877766544 466666666544 5566666666655543
No 219
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=25.50 E-value=1.4e+02 Score=17.07 Aligned_cols=51 Identities=10% Similarity=0.146 Sum_probs=23.7
Q ss_pred CcceeHHHHHHHHHHhC-CCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 47 NGYITTDVLREILKELD-DKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g-~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
+|.++..|...+-.-+. ...+..+...+...+....+...++.+|...+..
T Consensus 13 DG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (106)
T cd07316 13 DGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKESDFGLEEYARQFRR 64 (106)
T ss_pred cCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 57777776544433221 2233333333333332222222566777766654
No 220
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=25.06 E-value=86 Score=20.49 Aligned_cols=31 Identities=13% Similarity=0.149 Sum_probs=22.5
Q ss_pred HHHHHHHHHhhCCCCCCceeHHHHHHHHHhh
Q psy13834 68 ADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98 (104)
Q Consensus 68 ~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~ 98 (104)
..-++.++..-+.+.++.|++..|..+++..
T Consensus 82 ~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~ 112 (175)
T PF04876_consen 82 HSFLEHLLGGEDDSTNGLIDIGKFFDILQPK 112 (175)
T ss_pred HHHHHHHhcCCcCCcccceeHHHHHHHHHHH
Confidence 3446666666555668889999999988753
No 221
>COG1859 KptA RNA:NAD 2'-phosphotransferase [Translation, ribosomal structure and biogenesis]
Probab=24.93 E-value=1.5e+02 Score=20.33 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=30.7
Q ss_pred cCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 43 TKIGNGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 43 D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
-.|..|+.+.+++...++..+..++.+.+..+...-+
T Consensus 53 ~lD~~Gwa~i~~l~~~~~k~~~~~~~~~l~~iV~~d~ 89 (211)
T COG1859 53 RLDEEGWADIDELLEGLRKAGRWLTRELLLAVVATDD 89 (211)
T ss_pred eeccccchhHHHHHHHHHhhccCCCHHHHHHHHhcCC
Confidence 5678899999999999999999999877776665544
No 222
>cd08313 Death_TNFR1 Death domain of Tumor Necrosis Factor Receptor 1. Death Domain (DD) found in tumor necrosis factor receptor-1 (TNFR-1). TNFR-1 has many names including TNFRSF1A, CD120a, p55, p60, and TNFR60. It activates two major intracellular signaling pathways that lead to the activation of the transcription factor NF-kB and the induction of cell death. Upon binding of its ligand TNF, TNFR-1 trimerizes which leads to the recruitment of an adaptor protein named TNFR-associated death domain protein (TRADD) through a DD/DD interaction. Mutations in the TNFRSF1A gene causes TNFR-associated periodic syndrome (TRAPS), a rare disorder characterized recurrent fever, myalgia, abdominal pain, conjunctivitis and skin eruptions. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation a
Probab=24.76 E-value=1.3e+02 Score=17.14 Aligned_cols=24 Identities=13% Similarity=0.403 Sum_probs=16.4
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHH
Q psy13834 49 YITTDVLREILKELDDKISADDLDMM 74 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l 74 (104)
.++..+.+++.+.+| +|+.+|+.+
T Consensus 8 ~v~~~~wk~~~R~LG--lse~~Id~i 31 (80)
T cd08313 8 EVPPRRWKEFVRRLG--LSDNEIERV 31 (80)
T ss_pred hCCHHHHHHHHHHcC--CCHHHHHHH
Confidence 356677788888887 666666544
No 223
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=24.74 E-value=79 Score=18.67 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=7.6
Q ss_pred eeHHHHHHHHHHhC
Q psy13834 50 ITTDVLREILKELD 63 (104)
Q Consensus 50 i~~~el~~~l~~~g 63 (104)
++..++..++..+|
T Consensus 33 ~s~~el~~~l~~~~ 46 (110)
T PF03960_consen 33 LSREELRELLSKLG 46 (110)
T ss_dssp --HHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhc
Confidence 56666666666665
No 224
>PRK03341 arginine repressor; Provisional
Probab=24.33 E-value=1.5e+02 Score=19.48 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=31.2
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC----CCCCCce
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEID----SDGSGTV 86 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d----~~~~g~I 86 (104)
.+..+-++|...|+..|+.+|+.-+.+-+.++. .+.+|.-
T Consensus 27 ~~i~tQ~eL~~~L~~~Gi~vTQaTiSRDl~eL~~~Kv~~~~G~~ 70 (168)
T PRK03341 27 QSVRSQAELAALLADEGIEVTQATLSRDLDELGAVKLRGADGGL 70 (168)
T ss_pred CCCccHHHHHHHHHHcCCcccHHHHHHHHHHhcCEeeecCCCCE
Confidence 456678999999999999999998888877664 3455554
No 225
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=24.07 E-value=1.6e+02 Score=17.19 Aligned_cols=53 Identities=11% Similarity=0.068 Sum_probs=37.0
Q ss_pred cceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCC
Q psy13834 48 GYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100 (104)
Q Consensus 48 g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~ 100 (104)
-.|.-.+|..++.....-.+..+...+=..+|.-.++.|+.=||--+..-..|
T Consensus 21 ~IVPW~~F~~~L~~~h~~~~~~~~~aLk~TiDlT~n~~iS~FeFdvFtRlFqP 73 (85)
T PF02761_consen 21 TIVPWSEFRQALQKVHPISSGLEAMALKSTIDLTCNDYISNFEFDVFTRLFQP 73 (85)
T ss_dssp SEEEHHHHHHHHHHHS--SSHHHHHHHHHHH-TTSSSEEEHHHHHHHHHHT--
T ss_pred eEeeHHHHHHHHHHhcCCCchHHHHHHHHHHhcccCCccchhhhHHHHHHHhh
Confidence 45888999999998754444455667778889999999999888776654433
No 226
>COG0721 GatC Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit [Translation, ribosomal structure and biogenesis]
Probab=23.59 E-value=1.7e+02 Score=17.27 Aligned_cols=30 Identities=13% Similarity=0.297 Sum_probs=21.3
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
.|+.+++.++.+-....+++++++.+...+
T Consensus 2 ~i~~e~v~~la~LarL~lseee~e~~~~~l 31 (96)
T COG0721 2 AIDREEVKHLAKLARLELSEEELEKFATQL 31 (96)
T ss_pred ccCHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 467788888887777788888777654433
No 227
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=23.48 E-value=1.2e+02 Score=16.62 Aligned_cols=37 Identities=22% Similarity=0.230 Sum_probs=21.2
Q ss_pred ccCCCCcceeHHHHHHHHHHh----CCCCCHHHHHHHHHhh
Q psy13834 42 STKIGNGYITTDVLREILKEL----DDKISADDLDMMIAEI 78 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~----g~~~s~~~~~~l~~~~ 78 (104)
.+...+-.+-..+|+.++..+ |...+++-++.+|+.|
T Consensus 32 l~~~~~~dl~a~~L~~A~~~L~~ItG~~~~ediLd~IFs~F 72 (73)
T PF12631_consen 32 LENGLPLDLVAEDLREALESLGEITGEVVTEDILDNIFSNF 72 (73)
T ss_dssp HHTT--HHHHHHHHHHHHHHHHHHCTSS--HHHHHHHHCTS
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhh
Confidence 343333455667788888875 4566666677777654
No 228
>PF12995 DUF3879: Domain of unknown function, E. rectale Gene description (DUF3879); InterPro: IPR024540 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=23.31 E-value=2.2e+02 Score=18.96 Aligned_cols=36 Identities=19% Similarity=0.353 Sum_probs=26.2
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCce
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEIDSDGSGTV 86 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I 86 (104)
...+.+.-|+..|++....+...++.++-.++.|.|
T Consensus 3 ns~~~~~~lka~gi~tnskqyka~~~~mm~~~~~~~ 38 (186)
T PF12995_consen 3 NSSSVQEQLKAAGINTNSKQYKAVMSEMMSAGEGAM 38 (186)
T ss_pred ChHHHHHHHHhcCCCcChHHHHHHHHHHhcCCCCce
Confidence 345677778888888777777777777777776653
No 229
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=23.20 E-value=2.2e+02 Score=18.58 Aligned_cols=38 Identities=21% Similarity=0.354 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHhhCCCC
Q psy13834 65 KISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAPET 102 (104)
Q Consensus 65 ~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~~~~ 102 (104)
.+...++.+++..+..+-.|=+--.+|+..+..+.|.-
T Consensus 106 KlrVk~LK~iL~~~g~~C~GC~EK~dfv~ri~el~~k~ 143 (154)
T PF10208_consen 106 KLRVKQLKKILDDWGEDCKGCLEKSDFVRRIEELKPKY 143 (154)
T ss_dssp TTCHHHHHHHHHHHTTT-SS-CSHHHHHHHCHCCCCCC
T ss_pred hCcHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhhc
Confidence 45667788888888888888899999999888775543
No 230
>PRK04280 arginine repressor; Provisional
Probab=23.08 E-value=1.4e+02 Score=19.11 Aligned_cols=36 Identities=22% Similarity=0.226 Sum_probs=28.1
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhC----CCCCCce
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEID----SDGSGTV 86 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d----~~~~g~I 86 (104)
+-+||...|+..|+..++.-+.+-+.++. .+.+|.-
T Consensus 20 tQeeL~~~L~~~Gi~vTQATiSRDikeL~lvKv~~~~G~~ 59 (148)
T PRK04280 20 TQDELVDRLREEGFNVTQATVSRDIKELHLVKVPLPDGRY 59 (148)
T ss_pred CHHHHHHHHHHcCCCeehHHHHHHHHHcCCEEeecCCCcE
Confidence 45789999999999999999988887764 3455653
No 231
>PF15320 RAM: mRNA cap methylation, RNMT-activating mini protein
Probab=22.79 E-value=1.4e+02 Score=17.19 Aligned_cols=25 Identities=4% Similarity=-0.116 Sum_probs=16.6
Q ss_pred HHHHHHHhhCCCCCCceeHHHHHHHHHhhC
Q psy13834 70 DLDMMIAEIDSDGSGTVDFDVIQRKILILA 99 (104)
Q Consensus 70 ~~~~l~~~~d~~~~g~I~~~eF~~~l~~~~ 99 (104)
+++++|+....+.| .||.+++..-.
T Consensus 2 ~~Ee~Fa~RfTe~D-----~ey~~~~~~~~ 26 (81)
T PF15320_consen 2 ECEEEFADRFTEDD-----EEYMEYCKRPF 26 (81)
T ss_pred hHHHHHHHhccccC-----HHHHHHHhCCC
Confidence 45677777766655 67777777443
No 232
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=22.74 E-value=2.7e+02 Score=19.66 Aligned_cols=47 Identities=11% Similarity=0.101 Sum_probs=28.5
Q ss_pred CcceeHHHHHHHHHH-----hCCCCCHHHHHHHHHhhC----CCCCCceeHHHHHH
Q psy13834 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEID----SDGSGTVDFDVIQR 93 (104)
Q Consensus 47 ~g~i~~~el~~~l~~-----~g~~~s~~~~~~l~~~~d----~~~~g~I~~~eF~~ 93 (104)
.-.++...|..+|.. .|.+++++++.-+-..+- ...+..|+|.+|+.
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 345788889888873 578999998875544332 22467899999965
No 233
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=22.69 E-value=1.2e+02 Score=15.26 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=19.9
Q ss_pred Cccee-HHHHHHHHHHhCCCCCHHHHHHHHHh
Q psy13834 47 NGYIT-TDVLREILKELDDKISADDLDMMIAE 77 (104)
Q Consensus 47 ~g~i~-~~el~~~l~~~g~~~s~~~~~~l~~~ 77 (104)
.|.|+ ..++-..|...|.-++++.+++++..
T Consensus 15 ~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 15 RGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred cCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 46665 34445555666788888777777654
No 234
>PHA02142 putative RNA ligase
Probab=22.16 E-value=1.2e+02 Score=22.71 Aligned_cols=28 Identities=11% Similarity=0.216 Sum_probs=24.8
Q ss_pred hcccccccCCCCcceeHHHHHHHHHHhCCC
Q psy13834 36 TYRVTKSTKIGNGYITTDVLREILKELDDK 65 (104)
Q Consensus 36 ~f~~~~~D~~~~g~i~~~el~~~l~~~g~~ 65 (104)
+|.+ |+-+..++++.+++..++..+|..
T Consensus 274 vF~v--~~i~~~~yl~~~e~~~~~~~~gl~ 301 (366)
T PHA02142 274 AFRA--WFIDEQRFATDEEFQDLCRTLGME 301 (366)
T ss_pred EEEE--EEeccceeCCHHHHHHHHHHcCCc
Confidence 7888 888888999999999999998864
No 235
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=22.11 E-value=1.3e+02 Score=16.10 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=18.2
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
.+.+.-.+|..+..+.+ ++.+++..+|++..
T Consensus 20 h~~L~E~DL~~L~~kS~--ms~qqVr~WFa~~~ 50 (56)
T PF11569_consen 20 HKQLQEEDLDELCDKSR--MSYQQVRDWFAERM 50 (56)
T ss_dssp T----TTHHHHHHHHTT----HHHHHHHHHHHS
T ss_pred cCCccHhhHHHHHHHHC--CCHHHHHHHHHHhc
Confidence 34555567777777766 77788888887654
No 236
>PF09687 PRESAN: Plasmodium RESA N-terminal; InterPro: IPR019111 The short, four-helical domain first identified in the Plasmodium export proteins PHISTa and PHISTc [] has been extended to become this six-helical PRESAC domain identified in the P. falciparum-specific RESA-type (Ring-infected erythrocyte surface antigen) proteins in association with the DnaJ domain. Overall, at least 67 proteins have been detected in P. falciparum with complete copies of the PRESAC domain. No versions of this domain were detected in other apicomplexan genera, suggesting that the domain was 'invented' after the divergence of the lineage leading to the genus Plasmodium undergoing a dramatic proliferation only in P. falciparum. A secondary structure-prediction derived from the multiple alignment of the PRESAC family reveals that it is composed of an all-helical fold with six conserved helical segments. There is some evidence it might localise to membranes [].
Probab=21.88 E-value=1.8e+02 Score=17.05 Aligned_cols=30 Identities=13% Similarity=0.305 Sum_probs=19.2
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
.++.+++...+..++..++..++..++...
T Consensus 5 ~lt~~ei~~~i~~l~~~~~k~~m~~iw~~~ 34 (129)
T PF09687_consen 5 NLTDEEINKKINSLGEFVSKKDMYNIWNQV 34 (129)
T ss_pred HhhHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 355667777777777667766666555444
No 237
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=21.68 E-value=1.7e+02 Score=16.51 Aligned_cols=64 Identities=11% Similarity=0.189 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHHhchhhhcCCCchhhcccccccCCCCcceeHHHHHHHHHHhCCCCCHHHHHHHHHhh
Q psy13834 10 YITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEI 78 (104)
Q Consensus 10 ~~~~~~~~~l~~~~d~~~~~~~~~~~~f~~~~~D~~~~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~ 78 (104)
.++.+.+..|+..+...+.---.. +++. -+-+...+=+..++..++.. ...+|..|++.+..+.
T Consensus 3 ~~s~ENv~~MIe~Ik~KL~mvN~~--~i~~--~~f~~~~yedl~diy~~V~~-K~~fS~sEm~aI~~EL 66 (71)
T PF06569_consen 3 EPSQENVEYMIEEIKQKLNMVNAG--AIKP--EDFSEEKYEDLKDIYEMVMS-KDSFSPSEMQAIAEEL 66 (71)
T ss_pred CccHHHHHHHHHHHHHHHHHhhHH--hCCH--HhCChhhHHHHHHHHHHHHh-ccCCCHHHHHHHHHHH
Confidence 466777777877765541111111 3333 22222333334445555544 4567778888777665
No 238
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=21.62 E-value=1.9e+02 Score=17.10 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=7.3
Q ss_pred CCCHHHHHHHHHHh
Q psy13834 10 YITTDVLREILKEL 23 (104)
Q Consensus 10 ~~~~~~~~~l~~~~ 23 (104)
+++.+++..+++.+
T Consensus 35 p~s~~eL~~~l~~~ 48 (105)
T cd03035 35 GLDAATLERWLAKV 48 (105)
T ss_pred CCCHHHHHHHHHHh
Confidence 45555555555543
No 239
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=21.58 E-value=2.3e+02 Score=22.07 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCC--CCCCceeHHHHHHHHHh
Q psy13834 52 TDVLREILKELDDKISADDLDMMIAEIDS--DGSGTVDFDVIQRKILI 97 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~~~d~--~~~g~I~~~eF~~~l~~ 97 (104)
..-++..++.+|+.++++++.+++..+.. +..+.|+-+|+..++..
T Consensus 429 ~~av~~~l~~lG~~~~~~~~~~l~~~vk~~a~~~~~l~~~el~~i~~~ 476 (503)
T PLN03228 429 RHAVKDRLKELGYELDDEKLNEVFSRFRDLTKEKKRITDADLKALVVN 476 (503)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Confidence 34567788889999999988888766532 12356999998888764
No 240
>PF00690 Cation_ATPase_N: Cation transporter/ATPase, N-terminus; InterPro: IPR004014 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3KDP_C 3N2F_A 3B8E_A 3N23_A 2XZB_A 1MHS_B 3A3Y_A 2ZXE_A 3B8C_A 3B9B_A ....
Probab=21.43 E-value=1.5e+02 Score=15.80 Aligned_cols=16 Identities=6% Similarity=0.208 Sum_probs=7.3
Q ss_pred CCCCHHHHHHHHHhhC
Q psy13834 64 DKISADDLDMMIAEID 79 (104)
Q Consensus 64 ~~~s~~~~~~l~~~~d 79 (104)
.+++.+++.+-...+.
T Consensus 19 ~GLs~~ev~~r~~~~G 34 (69)
T PF00690_consen 19 QGLSSEEVEERRKKYG 34 (69)
T ss_dssp SBBTHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhcc
Confidence 3444444444444443
No 241
>cd05832 Ribosomal_L12p Ribosomal protein L12p. This subfamily includes archaeal L12p, the protein that is functionally equivalent to L7/L12 in bacteria and the P1 and P2 proteins in eukaryotes. L12p is homologous to P1 and P2 but is not homologous to bacterial L7/L12. It is located in the L12 stalk, with proteins L10, L11, and 23S rRNA. L12p is the only protein in the ribosome to occur as multimers, always appearing as sets of dimers. Recent data indicate that most archaeal species contain six copies of L12p (three homodimers), while eukaryotes have four copies (two heterodimers), and bacteria may have four or six copies (two or three homodimers), depending on the species. The organization of proteins within the stalk has been characterized primarily in bacteria, where L7/L12 forms either two or three homodimers and each homodimer binds to the extended C-terminal helix of L10. L7/L12 is attached to the ribosome through L10 and is the only ribosomal protein that does not directly intera
Probab=21.40 E-value=2.1e+02 Score=17.43 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=33.8
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.||.+++..++...|..+....+..+...+.. .+.++.+....
T Consensus 16 eITae~I~~IL~AAGveVd~~~~~ala~aL~g-----kdIeElIa~~~ 58 (106)
T cd05832 16 EINEENLKKVLEAAGIEVDEARVKALVAALEE-----VNIDEAIKKAA 58 (106)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhcc
Confidence 79999999999999999988877777777743 56666665444
No 242
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=21.21 E-value=1.2e+02 Score=18.60 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=11.2
Q ss_pred CCCCHHHHHHHHHHhchh
Q psy13834 9 GYITTDVLREILKELDDK 26 (104)
Q Consensus 9 ~~~~~~~~~~l~~~~d~~ 26 (104)
..++.+++..+++.....
T Consensus 36 ~~~s~~eL~~~l~~~g~~ 53 (117)
T COG1393 36 TPPSREELKKILSKLGDG 53 (117)
T ss_pred CCCCHHHHHHHHHHcCcc
Confidence 356667777776666543
No 243
>PF06226 DUF1007: Protein of unknown function (DUF1007); InterPro: IPR010412 This is a family of conserved bacterial proteins with unknown function.
Probab=21.06 E-value=64 Score=21.78 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.2
Q ss_pred ccCCCCcceeHHHHHHHHHHh
Q psy13834 42 STKIGNGYITTDVLREILKEL 62 (104)
Q Consensus 42 ~D~~~~g~i~~~el~~~l~~~ 62 (104)
+|.|++|.++.+++..+....
T Consensus 59 ~D~~~dg~~~~~el~~l~~~~ 79 (212)
T PF06226_consen 59 LDKDGDGKLDPEELAALAKEI 79 (212)
T ss_pred hhhcccCCCCHHHHHHHHHHH
Confidence 789999999999998887754
No 244
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=21.05 E-value=90 Score=17.07 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=12.1
Q ss_pred CCceeHHHHHHHHHhh
Q psy13834 83 SGTVDFDVIQRKILIL 98 (104)
Q Consensus 83 ~g~I~~~eF~~~l~~~ 98 (104)
+|.|+++.|+.....+
T Consensus 37 ~g~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 37 RGSIDLDTFLKQVRSL 52 (65)
T ss_dssp TTSS-HHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH
Confidence 5789999999887754
No 245
>smart00874 B5 tRNA synthetase B5 domain. This domain is found in phenylalanine-tRNA synthetase beta subunits.
Probab=20.88 E-value=1.5e+02 Score=15.75 Aligned_cols=17 Identities=12% Similarity=0.415 Sum_probs=10.6
Q ss_pred CCCCCHHHHHHHHHhhC
Q psy13834 63 DDKISADDLDMMIAEID 79 (104)
Q Consensus 63 g~~~s~~~~~~l~~~~d 79 (104)
|..++.+++..++..+.
T Consensus 16 G~~i~~~ei~~~L~~lg 32 (71)
T smart00874 16 GLDLSAEEIEEILKRLG 32 (71)
T ss_pred CCCCCHHHHHHHHHHCC
Confidence 66666666666666554
No 246
>PF13592 HTH_33: Winged helix-turn helix
Probab=20.61 E-value=1.5e+02 Score=15.53 Aligned_cols=32 Identities=16% Similarity=0.236 Sum_probs=21.3
Q ss_pred cceeHHHHHHHHH-HhCCCCCHHHHHHHHHhhC
Q psy13834 48 GYITTDVLREILK-ELDDKISADDLDMMIAEID 79 (104)
Q Consensus 48 g~i~~~el~~~l~-~~g~~~s~~~~~~l~~~~d 79 (104)
+..+..++...+. ..|..++..-+.+++..+.
T Consensus 3 ~~wt~~~i~~~I~~~fgv~ys~~~v~~lL~r~G 35 (60)
T PF13592_consen 3 GRWTLKEIAAYIEEEFGVKYSPSGVYRLLKRLG 35 (60)
T ss_pred CcccHHHHHHHHHHHHCCEEcHHHHHHHHHHcC
Confidence 4556667777666 4577777777777776554
No 247
>PF09107 SelB-wing_3: Elongation factor SelB, winged helix ; InterPro: IPR015191 This entry represents a domain with a winged helix-type fold, which consists of a closed 3-helical bundle with a right-handed twist, and a small beta-sheet wing []. Different winged helix domains share a common structure, but can differ in sequence. This entry is designated "type 3". The winged helix motif is involved in both DNA and RNA binding. In the elongation factor SelB, the winged helix domains recognise RNA, allowing the complex to wrap around the small ribosomal subunit. In bacteria, the incorporation of the amino acid selenocysteine into proteins requires elongation factor SelB, which binds both transfer RNA (tRNA) and mRNA. SelB binds to an mRNA hairpin formed by the selenocysteine insertion sequence (SECIS) with extremely high specificity []. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm; PDB: 2PJP_A 2UWM_A 1WSU_B 1LVA_A 2PLY_A.
Probab=20.60 E-value=1.4e+02 Score=15.34 Aligned_cols=30 Identities=27% Similarity=0.400 Sum_probs=21.2
Q ss_pred CcceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCC
Q psy13834 47 NGYITTDVLREILKELDDKISADDLDMMIAEIDSD 81 (104)
Q Consensus 47 ~g~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~ 81 (104)
.|.|+..+++.++ | +|....-.++..+|..
T Consensus 8 ~~~itv~~~rd~l---g--~sRK~ai~lLE~lD~~ 37 (50)
T PF09107_consen 8 NGEITVAEFRDLL---G--LSRKYAIPLLEYLDRE 37 (50)
T ss_dssp TSSBEHHHHHHHH---T--S-HHHHHHHHHHHHHT
T ss_pred CCcCcHHHHHHHH---C--ccHHHHHHHHHHHhcc
Confidence 6889999999888 3 5666666677666643
No 248
>TIGR03685 L21P_arch 50S ribosomal protein L12P. This model represents the L12P protein of the large (50S) subunit of the archaeal ribosome.
Probab=20.46 E-value=2.1e+02 Score=17.23 Aligned_cols=43 Identities=14% Similarity=0.326 Sum_probs=33.3
Q ss_pred ceeHHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHH
Q psy13834 49 YITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96 (104)
Q Consensus 49 ~i~~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~ 96 (104)
.||.+++..++...|..+....+..+...+.. .+.++.+....
T Consensus 16 ~iT~e~I~~IL~AAGv~ve~~~~~~la~~L~g-----k~i~eli~~~~ 58 (105)
T TIGR03685 16 EINEENLKAVLEAAGVEVDEARVKALVAALEG-----VNIEEAIKKAA 58 (105)
T ss_pred CCCHHHHHHHHHHhCCcccHHHHHHHHHHHcC-----CCHHHHHHhhh
Confidence 79999999999999999888877777777742 45666665444
No 249
>PRK05066 arginine repressor; Provisional
Probab=20.31 E-value=2e+02 Score=18.60 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=28.0
Q ss_pred eHHHHHHHHHHhCCC-CCHHHHHHHHHhhC----CCCCCce
Q psy13834 51 TTDVLREILKELDDK-ISADDLDMMIAEID----SDGSGTV 86 (104)
Q Consensus 51 ~~~el~~~l~~~g~~-~s~~~~~~l~~~~d----~~~~g~I 86 (104)
+-+||...|+..|+. +++.-+.+-++++. .+++|.-
T Consensus 25 tQeeL~~~L~~~Gi~~vTQATiSRDikeL~lvKv~~~~G~~ 65 (156)
T PRK05066 25 SQGEIVTALQEQGFDNINQSKVSRMLTKFGAVRTRNAKMEM 65 (156)
T ss_pred CHHHHHHHHHHCCCCeecHHHHHHHHHHcCCEEeeCCCCCE
Confidence 457899999999999 89999988888764 3455643
No 250
>COG1438 ArgR Arginine repressor [Transcription]
Probab=20.18 E-value=1.4e+02 Score=19.27 Aligned_cols=29 Identities=21% Similarity=0.302 Sum_probs=22.2
Q ss_pred eHHHHHHHHHHhCCCCCHHHHHHHHHhhC
Q psy13834 51 TTDVLREILKELDDKISADDLDMMIAEID 79 (104)
Q Consensus 51 ~~~el~~~l~~~g~~~s~~~~~~l~~~~d 79 (104)
|-+|+...|...|+.+++.-+.+.+.++.
T Consensus 22 TQ~Elv~~L~~~Gi~vTQaTvSRDlkelg 50 (150)
T COG1438 22 TQEELVELLQEEGIEVTQATVSRDLKELG 50 (150)
T ss_pred CHHHHHHHHHHcCCeEehHHHHHHHHHcC
Confidence 45778888888888888888887777663
No 251
>cd08316 Death_FAS_TNFRSF6 Death domain of FAS or TNF receptor superfamily member 6. Death Domain (DD) found in the FS7-associated cell surface antigen (FAS). FAS, also known as TNFRSF6 (TNF receptor superfamily member 6), APT1, CD95, FAS1, or APO-1, together with FADD (Fas-associating via Death Domain) and caspase 8, is an integral part of the death inducing signalling complex (DISC), which plays an important role in the induction of apoptosis and is activated by binding of the ligand FasL to FAS. FAS also plays a critical role in self-tolerance by eliminating cell types (autoreactive T and B cells) that contribute to autoimmunity. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitment domain), DED (Death Effector Domain), and PYRIN. They serve as adaptors in sign
Probab=20.09 E-value=1.2e+02 Score=18.06 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHH
Q psy13834 52 TDVLREILKELDDKISADDLDMMIA 76 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~ 76 (104)
...|.++|+.++.....+.+..++.
T Consensus 69 ~~~Li~aLr~~~l~~~Ad~I~~~l~ 93 (97)
T cd08316 69 YRTLIKTLRKAKLCTKADKIQDIIE 93 (97)
T ss_pred HHHHHHHHHHccchhHHHHHHHHHH
Confidence 4666677777776666566655543
No 252
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=20.02 E-value=2e+02 Score=17.33 Aligned_cols=46 Identities=17% Similarity=0.293 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHhhCCCCCCceeHHHHHHHHHh
Q psy13834 52 TDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILI 97 (104)
Q Consensus 52 ~~el~~~l~~~g~~~s~~~~~~l~~~~d~~~~g~I~~~eF~~~l~~ 97 (104)
..-+..++..+...++.+|-..+...++.=.+|.|++..-+.++..
T Consensus 52 ~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 52 INVLQHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence 3445666666667788777666666665556788888766666543
No 253
>TIGR02613 mob_myst_B mobile mystery protein B. Members of this protein family, which we designate mobile mystery protein B, are found in mobization-related contexts more often than not, including within a CRISPR-associated gene region in Geobacter sulfurreducens PCA, and on plasmids in Agrobacterium tumefaciens and Coxiella burnetii, always together with mobile mystery protein A (TIGR02612), a member of the family of helix-turn-helix DNA binding proteins (pfam01381). This protein is encoded by the downstream member of the gene pair and belongs to the Fic protein family (pfam02661), where Fic (filamentation induced by cAMP) is a regulator of cell division. The characteristics of having a two-gene operon in a varied context and often on plasmids, with one member affecting cell division and the other able to bind DNA, suggests similarity to addiction modules.
Probab=20.01 E-value=2e+02 Score=18.97 Aligned_cols=22 Identities=18% Similarity=0.111 Sum_probs=18.3
Q ss_pred CCCCcceeHHHHHHHHHHhCCC
Q psy13834 44 KIGNGYITTDVLREILKELDDK 65 (104)
Q Consensus 44 ~~~~g~i~~~el~~~l~~~g~~ 65 (104)
.||+|.+.+-=+..++...|..
T Consensus 126 ~DGNGRt~Rll~~l~L~~~g~~ 147 (186)
T TIGR02613 126 PNGNGRHARLATDLLLEQQGYS 147 (186)
T ss_pred CCCCcHHHHHHHHHHHHHCCCC
Confidence 5899999988888888888863
Done!