RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13834
(104 letters)
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 64.9 bits (159), Expect = 1e-15
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NGYI+ LR ++ L +K++ ++++ MI E D DG G V+++
Sbjct: 22 QNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYE 65
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 64.1 bits (157), Expect = 2e-15
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G+IT D LR + L + ++LD MI E D D G V+++
Sbjct: 19 GDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYE 62
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 65.3 bits (160), Expect = 4e-15
Identities = 32/44 (72%), Positives = 40/44 (90%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNGYI+TDV+REIL ELD+ +S++DLD MI EID+DGSGTVDF+
Sbjct: 104 GNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFE 147
Score = 48.7 bits (117), Expect = 9e-09
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G ++TD + IL+ L + + + +I E D G+G +DFD
Sbjct: 27 GSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFD 70
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 63.8 bits (156), Expect = 4e-15
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNGYI+ LR ++ L +K++ +++D MI E D DG G V+++
Sbjct: 42 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 85
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A
1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A
2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 64.9 bits (159), Expect = 8e-15
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L EIL+ + ++ +D++ ++ + D + G +DFD
Sbjct: 109 ADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDFD 152
Score = 48.7 bits (117), Expect = 9e-09
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G I+T L +++ L + ++LD +I E+D DGSGT+DF+
Sbjct: 33 GGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFE 76
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 64.5 bits (158), Expect = 9e-15
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI + L+ +L+ + I+ DD++ ++ + D + G +D+D
Sbjct: 108 ADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDYD 151
Score = 46.4 bits (111), Expect = 7e-08
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 48 GYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I+T L ++++ L + ++L MI E+D DGSGTVDFD
Sbjct: 34 GSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFD 75
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle,
cell division, mitosis, MR transport, nuclear pore
complex, nucleus, phosphoprotein; 2.50A {Saccharomyces
cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 64.1 bits (157), Expect = 1e-14
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I+ LR + KEL + ++ ++L MI E D DG G ++ +
Sbjct: 109 HTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINEN 152
Score = 47.2 bits (113), Expect = 4e-08
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G++ L+ +K L ++ ++ +I E DS+G + +D
Sbjct: 36 NDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYD 79
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 62.2 bits (152), Expect = 1e-14
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G I+T L +++ L + ++LD +I E+D DGSGT+DF+
Sbjct: 33 GGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFE 76
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 62.9 bits (154), Expect = 3e-14
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I+ L+ + KEL + ++ ++L MI E D DG G V
Sbjct: 92 ETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSEQ 135
Score = 47.1 bits (113), Expect = 3e-08
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G I L+ ++ L + +++ MI+EID +G+G ++F
Sbjct: 19 GTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFG 62
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 62.9 bits (154), Expect = 6e-14
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNGYI+ LR ++ L +K++ +++D MI E D DG G V+++
Sbjct: 97 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 140
Score = 46.4 bits (111), Expect = 1e-07
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G ITT L +++ L + +L MI E+D+DG+GT+DF
Sbjct: 24 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 67
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 59.8 bits (146), Expect = 7e-14
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G ++ D RE+ + +D+ EID DG+G ++ D
Sbjct: 14 KDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding,
ME binding protein-toxin complex; 2.20A {Chlamydomonas
reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 62.2 bits (152), Expect = 8e-14
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT LR + KEL + ++ ++L MIAE D + +D D
Sbjct: 114 NSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 157
Score = 47.6 bits (114), Expect = 4e-08
Identities = 17/44 (38%), Positives = 28/44 (63%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I L+ ++ L + +++ MI+EID DGSGT+DF+
Sbjct: 41 GSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFE 84
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D*
2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A
1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 61.7 bits (151), Expect = 8e-14
Identities = 17/44 (38%), Positives = 29/44 (65%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I+ LR ++ L +K++ D++D MI E D DG G ++++
Sbjct: 96 GNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINYE 139
Score = 45.2 bits (108), Expect = 2e-07
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G ITT L +++ L + +L MI E+D+DG+GT+DF
Sbjct: 23 GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 66
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 64.1 bits (156), Expect = 1e-13
Identities = 18/44 (40%), Positives = 30/44 (68%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNGYI+ LR ++ L +K++ +++D MI E D DG G V+++
Sbjct: 398 GNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYE 441
Score = 47.6 bits (113), Expect = 7e-08
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
K G+G ITT L +++ L + +L MI E+D+DG+GT+DF
Sbjct: 321 FDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFP 368
Score = 24.5 bits (53), Expect = 9.4
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
Y T ++ L ++I ID G +
Sbjct: 260 DGNYKTRAEVKFEGDTLVNRIELK-------GIDFKEDGNILGH 296
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 61.4 bits (150), Expect = 1e-13
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I LR++L L D +++ +++ ++ E+ G G ++++
Sbjct: 89 GNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYE 132
Score = 38.3 bits (90), Expect = 7e-05
Identities = 8/51 (15%), Positives = 23/51 (45%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKIL 96
+G ++ + L L+ L + +L+ + ++++ F + RK +
Sbjct: 18 NDGKVSIEELGSALRSLGKNPTNAELNTIKGQLNAKEFDLATFKTVYRKPI 68
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 61.1 bits (149), Expect = 2e-13
Identities = 10/44 (22%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G ++ LR +L L +K++ ++D ++ ++ D +G +D+
Sbjct: 96 STGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYK 139
Score = 39.1 bits (92), Expect = 4e-05
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDFD 89
G G I D L + L+ + + + D++ A+ + ++ D
Sbjct: 17 GQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLD 61
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 62.1 bits (151), Expect = 2e-13
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G IT D + K S +D + D D +G +D D
Sbjct: 126 GSGTITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVD 169
Score = 34.3 bits (79), Expect = 0.003
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 10/54 (18%)
Query: 46 GNGYITTD-----VLREILKELDDKISADDLDMMIAEIDSDGSGT-----VDFD 89
GNG IT D +I +L+ + E G G + F
Sbjct: 33 GNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCGMEYGKEIAFP 86
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 60.6 bits (148), Expect = 2e-13
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKE-LDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I+T LRE ++ L ++ D++ +I ++D +G G VDF+
Sbjct: 101 GDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFE 145
Score = 48.7 bits (117), Expect = 8e-09
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI L ++ + + +L + +I+ + G VDFD
Sbjct: 24 KDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFD 67
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 60.8 bits (148), Expect = 5e-13
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + L+ L +K S D++D ++E DG+G +D
Sbjct: 138 GDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIK 181
Score = 34.6 bits (80), Expect = 0.002
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I+ + +R L + +LD M+AE G ++F
Sbjct: 70 KDGFISKNDIRATFDSLGRLCTEQELDSMVAE----APGPINFT 109
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 59.8 bits (146), Expect = 5e-13
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I D LRE+L + D+ + +++D M E D G ++
Sbjct: 89 ASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYV 132
Score = 33.6 bits (78), Expect = 0.004
Identities = 9/44 (20%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L ++L + + + L+ M++E G ++F
Sbjct: 20 RDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE----APGPINFT 59
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 57.9 bits (141), Expect = 8e-13
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT D L++ LK + ++ ++ ++ D D SGT+D+
Sbjct: 36 NSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 79
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 59.5 bits (145), Expect = 9e-13
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G I L E+L + + +++ M A D +G VD+
Sbjct: 108 GKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYK 151
Score = 31.8 bits (73), Expect = 0.020
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I D LRE + ++ + + + SG ++F
Sbjct: 38 ADGIIDKDDLRETFAAMGRLNVKNE---ELDAMIKEASGPINFT 78
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 57.6 bits (140), Expect = 9e-13
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I+ L + L+ L SAD++ M+AEID+DG G +DF+
Sbjct: 16 GDGKISLSELTDALRTLGST-SADEVQRMMAEIDTDGDGFIDFN 58
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 58.8 bits (142), Expect = 2e-12
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I L+ +L++L + +L +I E+ S T +
Sbjct: 61 GNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSYS 104
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 57.4 bits (139), Expect = 2e-12
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I L+ +L++L + +L +I E+ S T +
Sbjct: 45 GNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSYP 88
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein;
HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB:
1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 58.7 bits (142), Expect = 3e-12
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG IT D + K S++D + D D SG +D D
Sbjct: 122 QNGAITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVD 165
Score = 34.4 bits (79), Expect = 0.003
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 5/51 (9%)
Query: 46 GNGYITTD-----VLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVI 91
NG I+ D ++ L E G+G
Sbjct: 29 HNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGAGMKYGVET 79
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 57.5 bits (140), Expect = 4e-12
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G GYI L++ L L D++ + + +++ G + +D
Sbjct: 92 GTGYIPKAALQDALLNLGDRLKPHEFAEFLGITETE-KGQIRYD 134
Score = 45.9 bits (110), Expect = 8e-08
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+IT + L+ +LK+ ++ + M E D+ G+G + F
Sbjct: 19 RTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFP 62
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 55.6 bits (135), Expect = 5e-12
Identities = 11/45 (24%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELDDK-ISADDLDMMIAEIDSDGSGTVDFD 89
G+G I D + I++++ ++ ++ +++ + E D DG+G +D
Sbjct: 21 GDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDIP 65
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 56.7 bits (138), Expect = 7e-12
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I+ L+ +L + +K++ ++D M+ E+ DGSG ++
Sbjct: 97 GDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINIK 139
Score = 45.9 bits (110), Expect = 1e-07
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I+ L +++ L S ++ ++ EID DG+ ++F
Sbjct: 24 NSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFS 67
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 55.3 bits (134), Expect = 7e-12
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I++ L + LK L ++ D++ M+AEID+DG G + FD
Sbjct: 24 GDGKISSSELGDALKTLGS-VTPDEVRRMMAEIDTDGDGFISFD 66
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 56.8 bits (137), Expect = 7e-12
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I L+ ++++L + ++ MI+E+ S T+ +
Sbjct: 63 NEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISYR 106
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 56.8 bits (138), Expect = 9e-12
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEID--SDGSGTVDFD 89
G G+I+ LR +L L +++S +D+D +I D D G V ++
Sbjct: 97 GQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLEGNVKYE 142
Score = 40.6 bits (96), Expect = 9e-06
Identities = 6/48 (12%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + L ++ + L +D+ + G ++ F+
Sbjct: 20 FWDGRDGAVDAFKLGDVCRCLGINPRNEDVFA-VGGTHKMGEKSLPFE 66
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 55.0 bits (133), Expect = 1e-11
Identities = 9/56 (16%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD----VIQRKI 95
K + +T + L +++ L + + ++ + D D SG D + ++
Sbjct: 25 KDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQETFLTIMLEYG 80
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 56.4 bits (137), Expect = 1e-11
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ + ++++L+ + D + D++ M E +G G D+
Sbjct: 100 ETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYV 142
Score = 33.6 bits (78), Expect = 0.004
Identities = 8/44 (18%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+++ + ++ I ++L +L M+ E G ++F
Sbjct: 31 RDGFVSKEDIKAISEQLGRAPDDKELTAMLKE----APGPLNFT 70
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 53.3 bits (129), Expect = 3e-11
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I L+ ++ L + ++ ++ E D +G+G + FD
Sbjct: 20 KTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFD 63
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 51.9 bits (125), Expect = 2e-10
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 46 GNGYITTDVLREILKELDDKIS------ADDLDMMIAEIDSDGSGTVDFD 89
G+GY+T L+ + LD + + +I D + G + +
Sbjct: 20 GDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKE 69
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 53.0 bits (128), Expect = 2e-10
Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEID--SDGSGTVDFD 89
G G I++ +R +LK L ++I+ D + + D D G + ++
Sbjct: 98 GQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYE 143
Score = 37.2 bits (87), Expect = 2e-04
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 1/48 (2%)
Query: 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + + ++L+ L + + G +
Sbjct: 20 FWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQHG-GTKKMGEKAYKLE 66
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 52.3 bits (126), Expect = 3e-10
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKEL-DDKISADDLDMMIAEIDSDGSGTVDFD 89
IT + LR L + +S +D M+ E D DG G ++
Sbjct: 53 ERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGALNQT 97
Score = 31.5 bits (72), Expect = 0.022
Identities = 3/16 (18%), Positives = 6/16 (37%)
Query: 74 MIAEIDSDGSGTVDFD 89
M+ E S ++
Sbjct: 8 MLLETTSTTKMETKYE 23
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 52.6 bits (127), Expect = 3e-10
Identities = 11/44 (25%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG + LR +L L +K++ ++++ ++A D +G ++++
Sbjct: 100 GNGKVMGAELRHVLTTLGEKMTEEEVETVLAG-HEDSNGCINYE 142
Score = 37.2 bits (87), Expect = 2e-04
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSD--GSGTVDFD 89
++G+G I ++++ L + ++ ++ SD S VDF+
Sbjct: 21 RVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKSRRVDFE 68
Score = 24.5 bits (54), Expect = 6.1
Identities = 14/91 (15%), Positives = 35/91 (38%), Gaps = 6/91 (6%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTD----VLREILKEL 62
G+G I ++++ L + V KS ++ + + + +L+ + K
Sbjct: 23 GDGKILYSQCGDVMRALGQNPTNAEV-LKVLGNPKSDELKSRRVDFETFLPMLQAVAKN- 80
Query: 63 DDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93
+ + +D D +G+G V ++
Sbjct: 81 RGQGTYEDYLEGFRVFDKEGNGKVMGAELRH 111
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 50.7 bits (122), Expect = 3e-10
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 47 NGYITTDVLREILKELDDKI--SADDLDMMIAEIDSDGSGTVDFD 89
I+ + L+ +++ L + LD MI E+D +G G V F+
Sbjct: 21 PNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFE 65
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F*
1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C*
1o1g_C*
Length = 149
Score = 52.1 bits (126), Expect = 4e-10
Identities = 10/44 (22%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG + LR +L L +K++ ++++ ++ + D +G ++++
Sbjct: 98 GNGTVMGAELRHVLATLGEKMTEEEVEELMKGQE-DSNGCINYE 140
Score = 37.1 bits (87), Expect = 2e-04
Identities = 6/48 (12%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSD--GSGTVDFD 89
+ G+ IT + +I + L + +++ ++ + + + F+
Sbjct: 19 RTGDAKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFE 66
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like,
squid, contractIle protein; 2.60A {Todarodes pacificus}
PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Length = 153
Score = 52.1 bits (126), Expect = 5e-10
Identities = 8/44 (18%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G+I D L+++L+ + D S +++ + + + +++
Sbjct: 98 GQGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLK-NKQFNYN 140
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L+++ L D+L+ M+ E G ++F
Sbjct: 29 RDGFIGMEDLKDMFSSLGRVPPDDELNAMLKECP----GQLNFT 68
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major} SCOP:
a.39.1.8
Length = 191
Score = 52.7 bits (127), Expect = 6e-10
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + ++ +R L ++S ++ + D G++ FD
Sbjct: 106 GDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFD 149
Score = 49.2 bits (118), Expect = 9e-09
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I+ L L S + ++ D + SG + FD
Sbjct: 40 GSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFD 83
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 51.4 bits (124), Expect = 6e-10
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G ++ + ++ + + + L ++ ID+DG+G +D +
Sbjct: 13 GDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 51.0 bits (123), Expect = 1e-09
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G +T + + K+ + + + + D++G G + +
Sbjct: 88 GDGKLTKEEVTSFFKKHGI----EKVAEQVMKADANGDGYITLE 127
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 52.2 bits (126), Expect = 8e-10
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+GYIT D +++ K+ + +D MI EID D G +D+
Sbjct: 95 GSGYITLDEIQQACKDFG--LDDIHIDDMIKEIDQDNDGQIDYG 136
Score = 50.3 bits (121), Expect = 3e-09
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT D L++ LK + ++ ++ ++ D D SGT+D+
Sbjct: 23 NSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYG 66
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 50.7 bits (122), Expect = 1e-09
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L+ +LK ++ + + D DG G + D
Sbjct: 55 ASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAADKDGDGKIGID 101
Score = 27.9 bits (63), Expect = 0.27
Identities = 5/26 (19%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 64 DKISADDLDMMIAEIDSDGSGTVDFD 89
D + ADD+ + + ++ G+ +
Sbjct: 5 DLLKADDIKKALDAVKAE--GSFNHK 28
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 51.7 bits (124), Expect = 1e-09
Identities = 10/44 (22%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + D L+ ++K D + + + D+D SG ++
Sbjct: 141 GDGTVDVDELKTMMKAFD--VPQEAAYTFFEKADTDKSGKLERT 182
Score = 38.3 bits (89), Expect = 1e-04
Identities = 4/53 (7%), Positives = 15/53 (28%), Gaps = 9/53 (16%)
Query: 46 GNGYITTDVLREILKELDDKISADD---------LDMMIAEIDSDGSGTVDFD 89
+G + D + + ++A D + + + + +
Sbjct: 49 SDGKMEMDEVLYWPDRMRQLVNATDEQVEKMRDAVRVFFLHKGVEPVNGLLRE 101
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 51.0 bits (123), Expect = 2e-09
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT + L+ LK + + ++ ++ D D SGT+D+
Sbjct: 40 KSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDYK 83
Score = 49.1 bits (118), Expect = 1e-08
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+GYIT D L++ +E + ++ ++ ++D D G +D++
Sbjct: 112 GSGYITPDELQQACEEFG--VEDVRIEELMRDVDQDNDGRIDYN 153
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 50.3 bits (121), Expect = 2e-09
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GY+T ++ IL D ++ + + S+ +D+
Sbjct: 97 CTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSE--DNIDYK 138
Score = 28.3 bits (64), Expect = 0.27
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 4/46 (8%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
K G I+ D ++L S+ D + + ++
Sbjct: 26 KSSGGKISIDNASYNARKLGLAPSSIDEKKIKELYG----DNLTYE 67
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 49.6 bits (119), Expect = 2e-09
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKEL---DDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I D L+ L+ ++A + +A D DG G + +
Sbjct: 54 QSGFIEEDELKYFLQRFESGARVLTASETKTFLAAADHDGDGKIGAE 100
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 51.1 bits (123), Expect = 3e-09
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 46 GNGYITTDVLREIL--KELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I+ + L+ I ++++ + +D ++ E+D +G G +DF
Sbjct: 142 GNGKISVEELKRIFGRDDIENPLIDKAIDSLLQEVDLNGDGEIDFH 187
Score = 50.3 bits (121), Expect = 4e-09
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G +++ + + LK++ + D+ ++ +IDS+ SG + +
Sbjct: 70 NSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHYT 113
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 49.4 bits (118), Expect = 3e-09
Identities = 6/44 (13%), Positives = 16/44 (36%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
I+ + R I ++ + D + E+ + G + +
Sbjct: 37 KTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYP 80
Score = 25.9 bits (57), Expect = 1.8
Identities = 6/37 (16%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 55 LREILKELDDKISADDLDMMIA--EIDSDGSGTVDFD 89
R+IL L +++ + D+ + T+ +
Sbjct: 8 DRDILARLHKAVTSHYHAITQEFENFDTMKTNTISRE 44
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata}
SCOP: a.39.1.4
Length = 109
Score = 49.5 bits (119), Expect = 3e-09
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L+ +LK ++ + ++A DSD G + D
Sbjct: 54 QSGFIEEEELKGVLKGFSAHGRDLNDTETKALLAAGDSDHDGKIGAD 100
Score = 26.0 bits (58), Expect = 1.5
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 62 LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ + ADD++ I+ GT D+
Sbjct: 2 MTKVLKADDINKAISAF--KDPGTFDYK 27
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence,
southeast collabora structural genomics, secsg,
structural genomics, PSI; HET: CTZ; 1.72A {Renilla
muelleri} PDB: 2hq8_A
Length = 186
Score = 50.5 bits (121), Expect = 3e-09
Identities = 7/44 (15%), Positives = 19/44 (43%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GY++ + L+ + ++ D +D + +G + D
Sbjct: 115 KDGYVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRD 158
Score = 33.2 bits (76), Expect = 0.007
Identities = 4/53 (7%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 46 GNGYITTDVLREILKEL---------DDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G+I+ + I + + + + + ++ + +
Sbjct: 27 GDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLGLAPGVRISVE 79
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR
{Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 49.8 bits (120), Expect = 3e-09
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G I LR +L L +K+S +++D ++ + G V++
Sbjct: 89 ATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVPVK-DGMVNYH 131
Score = 35.6 bits (83), Expect = 7e-04
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G G I + ++L+ + I EI+S VD +
Sbjct: 18 GTGRIPKTSIGDLLRACGQNPT----LAEITEIESTLPAEVDME 57
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 50.7 bits (121), Expect = 3e-09
Identities = 11/45 (24%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELDDK-ISADDLDMMIAEIDSDGSGTVDFD 89
GN + + + + +L+ +D + E+D +G+G+V FD
Sbjct: 143 GNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFD 187
Score = 32.2 bits (73), Expect = 0.014
Identities = 6/54 (11%), Positives = 11/54 (20%), Gaps = 10/54 (18%)
Query: 46 GNGYITTDVLREIL----------KELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G + D + + D + G+ DF
Sbjct: 61 ETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGSKLENKGSEDFV 114
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 49.9 bits (120), Expect = 5e-09
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I + L++ L ++S D++I + D G G + FD
Sbjct: 87 NSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFD 130
Score = 46.1 bits (110), Expect = 1e-07
Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELD-DKISADDLDMMIAEIDSDGSGTVDFD 89
+G I+ L++ L + + +I+ D + V+F
Sbjct: 20 RSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGVNFS 64
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 48.1 bits (115), Expect = 5e-09
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + + R + EL + D + + +D+D G + F
Sbjct: 40 RSGRLEREEFRALCTELR--VRPADAEAVFQRLDADRDGAITFQ 81
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 50.6 bits (121), Expect = 5e-09
Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 28/110 (25%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQ--DTYRVTKSTKI------------------- 45
G+G + L+++L + D I P+ + ++
Sbjct: 135 GSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADF 194
Query: 46 ------GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG ++ RE L D + D D S V F
Sbjct: 195 RKIDTNSNGTLSRKEFREHFVRLGFD-KKSVQDALFRYADEDESDDVGFS 243
Score = 50.6 bits (121), Expect = 6e-09
Identities = 11/114 (9%), Positives = 36/114 (31%), Gaps = 35/114 (30%)
Query: 7 GNGYITTDVLREILKEL-------------------DDKISRHPVYQD----TYRVTKST 43
NG ++ RE L D + + + +
Sbjct: 201 SNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVG----FSEYVHLGLCLLVLR 256
Query: 44 KI-------GNGYITTDVLREILKELD-DKISADDLDMMIAEIDSDGSGTVDFD 89
+ +G ++ + ++++L++ + + + + +D D S ++ +
Sbjct: 257 ILYAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSYQ 310
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 48.4 bits (116), Expect = 7e-09
Identities = 10/47 (21%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELDD---KISADDLDMMIAEIDSDGSGTVDFD 89
+GY+ D L+ L++ +++ + ++ D+DG G + D
Sbjct: 54 QSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGAD 100
Score = 24.2 bits (53), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 67 SADDLDMMIAEIDSDGSGTVDFD 89
SA + + ID+D SG +D D
Sbjct: 39 SASQVKDIFRFIDNDQSGYLDGD 61
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 49.7 bits (119), Expect = 7e-09
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+ + D R+ L +L + + + + + D +GSGT+D +
Sbjct: 50 GSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGSGTLDLE 93
Score = 27.7 bits (62), Expect = 0.50
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 27/85 (31%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTD-VLREILKELDD- 64
G+G +T D LR + HP + +G T D VLR L D
Sbjct: 122 GDGVVTVDDLRGVYSGRA-----HPKVR------------SGEWTEDEVLRRFLDNFDSS 164
Query: 65 ----KISADD-LDMM---IAEIDSD 81
+++ + D A +++D
Sbjct: 165 EKDGQVTLAEFQDYYSGVSASMNTD 189
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 47.9 bits (115), Expect = 9e-09
Identities = 11/47 (23%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I D L+ L+ ++ + +A+ D DG G + D
Sbjct: 54 KSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDKDGDGMIGVD 100
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 48.0 bits (115), Expect = 9e-09
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I D L+ L+ ++ + + DSDG G + D
Sbjct: 55 KSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVD 101
Score = 23.7 bits (52), Expect = 9.2
Identities = 1/28 (3%), Positives = 10/28 (35%), Gaps = 2/28 (7%)
Query: 62 LDDKISADDLDMMIAEIDSDGSGTVDFD 89
++ D+ + + + + ++
Sbjct: 3 FSGILADADVAAALKACE--AADSFNYK 28
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 49.2 bits (118), Expect = 1e-08
Identities = 14/49 (28%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKELDDKISA-----DDLDMMIAEIDSDGSGTVDFD 89
+G ITT L IL + K + + + MI ++D + G +DF
Sbjct: 135 NDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIRDVDKNNDGKIDFH 183
Score = 48.8 bits (117), Expect = 2e-08
Identities = 17/44 (38%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G GYIT + L++ L++ K+ + D+++ +IDSDGSG +D+
Sbjct: 65 GKGYITKEQLKKGLEKDGLKLPYN-FDLLLDQIDSDGSGKIDYT 107
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A
1rk9_A 1g33_A
Length = 109
Score = 47.7 bits (114), Expect = 1e-08
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKELD---DKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I D L ILK +SA + ++A D DG G + +
Sbjct: 54 KSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVE 100
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein,
calcium-binding protein, NHE1 regulating protein; 2.70A
{Homo sapiens}
Length = 202
Score = 47.1 bits (112), Expect = 7e-08
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKEL-DDKISADDL----DMMIAEIDSDGSGTVDFD 89
+G I+ + ++L+ + +++ + L D + E D DG G V F
Sbjct: 127 RDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFV 175
Score = 35.5 bits (82), Expect = 0.001
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GY++ L++I L D +I DGS VDF
Sbjct: 42 KKGYLSRMDLQQIG-ALAVNPLGDR---IIESFFPDGSQRVDFP 81
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 46.5 bits (111), Expect = 8e-08
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI+ L ++LK L D +D I D DG G + F+
Sbjct: 88 KDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFE 136
Score = 37.6 bits (88), Expect = 1e-04
Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G ++ + + + + + + +I D+DG+G VDF
Sbjct: 17 LDNSGSLSVEEFMSLPELQQNPL----VQRVIDIFDTDGNGEVDFK 58
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 44.9 bits (107), Expect = 1e-07
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 46 GNGYITTDVLREILKEL---DDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I + L+ LK +++ + +A D+DG G + +
Sbjct: 55 KSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDTDGDGKIGVE 101
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 46.7 bits (111), Expect = 1e-07
Identities = 8/44 (18%), Positives = 17/44 (38%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + + L ++S M+ D+D +G + F
Sbjct: 64 RSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFY 107
Score = 39.8 bits (93), Expect = 3e-05
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + + L++L I+ ++ + + G D +
Sbjct: 130 RSGTLEPHEILPALQQLGFYINQRTSLLLH-RLFARGMAFCDLN 172
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 46.5 bits (111), Expect = 1e-07
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G IT + L + ++ + ++ E D + G VDF+
Sbjct: 136 GSGKITNEELGRLFGV--TEVDDETWHQVLQECDKNNDGEVDFE 177
Score = 41.1 bits (97), Expect = 1e-05
Identities = 10/55 (18%), Positives = 23/55 (41%), Gaps = 11/55 (20%)
Query: 46 GNGYITTDVLREILKE-----------LDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + L E ++ LD ++D ++ +D D +G +++
Sbjct: 53 GDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSVDFDRNGYIEYS 107
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 43.7 bits (104), Expect = 2e-07
Identities = 9/44 (20%), Positives = 24/44 (54%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G ++ + ++ + + + L ++ ID+DG+G +D +
Sbjct: 13 GDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 26.4 bits (59), Expect = 0.57
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 71 LDMMIAEIDSDGSGTVDFD 89
+ + EID +G G V ++
Sbjct: 2 AEALFKEIDVNGDGAVSYE 20
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 46.2 bits (110), Expect = 2e-07
Identities = 14/44 (31%), Positives = 28/44 (63%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G I+T L ++ + D I ++L+ +I ++D++ G VDF+
Sbjct: 430 GSGKISTKELFKLFSQADSSIQMEELESIIEQVDNNKDGEVDFN 473
Score = 31.2 bits (71), Expect = 0.046
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 46 GNGYITTDVLREILKEL--------------DDKISADDLDMMIAEIDSDGSGTVDF 88
+G + D L E + D +D ++ +D DGSG++++
Sbjct: 344 NDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTIEDQIDSLMPLLDMDGSGSIEY 400
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 45.1 bits (107), Expect = 3e-07
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G +T L + D A +D+DG G V
Sbjct: 111 GDGAVTVADTARALTAFG--VPEDLARQAAAALDTDGDGKVGET 152
Score = 35.9 bits (83), Expect = 7e-04
Identities = 8/59 (13%), Positives = 14/59 (23%), Gaps = 15/59 (25%)
Query: 46 GNGYITTDVLREILKELDDKISAD---------------DLDMMIAEIDSDGSGTVDFD 89
GNG+I K + + + D DG + +
Sbjct: 17 GNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGLAGIADRDGDQRITRE 75
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora
erythraea} SCOP: a.39.1.5
Length = 176
Score = 44.7 bits (106), Expect = 5e-07
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I D L L +S + ++D++G+G + D
Sbjct: 115 ADGQINADEFAAWLTALG--MSKAEAAEAFNQVDTNGNGELSLD 156
Score = 32.0 bits (73), Expect = 0.015
Identities = 8/59 (13%), Positives = 17/59 (28%), Gaps = 15/59 (25%)
Query: 46 GNGYITTD----VLREILKELDDKISADDL-----------DMMIAEIDSDGSGTVDFD 89
GNG + + I + A ++ D + E G++ +
Sbjct: 20 GNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEE 78
Score = 25.5 bits (56), Expect = 3.5
Identities = 10/103 (9%), Positives = 31/103 (30%), Gaps = 20/103 (19%)
Query: 7 GNGYITTDVLREILKELDDKI---SRHPVYQDTYRVTKSTKI---------GNGYITTD- 53
GNG + + + + + + Q +G +T +
Sbjct: 20 GNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDYLAKEAGVGSDGSLTEEQ 79
Query: 54 -------VLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
++ E + +++ + ++ D + G ++ D
Sbjct: 80 FIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 44.6 bits (106), Expect = 5e-07
Identities = 7/44 (15%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG ++ + +L + I D++ ++ +D + G + +
Sbjct: 52 HNGSLSHREIYTVLASV--GIKKWDINRILQALDINDRGNITYT 93
Score = 42.7 bits (101), Expect = 2e-06
Identities = 8/48 (16%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQR 93
+GYI+ + ++ + + +D+D + S G +I +
Sbjct: 121 EDGYISKSDIVSLVHD--KVLDNNDIDNFFLSVHSIKKGIPREHIINK 166
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding
protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB:
2scp_A
Length = 174
Score = 43.6 bits (103), Expect = 9e-07
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ I+ D L + ID++ G + +
Sbjct: 107 EDNNISRDEYGIFFGMLG--LDKTMAPASFDAIDTNNDGLLSLE 148
Score = 30.8 bits (70), Expect = 0.049
Identities = 6/55 (10%), Positives = 17/55 (30%), Gaps = 11/55 (20%)
Query: 46 GNGYITTDVLREILKELDD--KISADDLDMMIAEI---------DSDGSGTVDFD 89
+G IT + + ++ A+ +++ + G +D
Sbjct: 19 KDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDET 73
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 43.7 bits (103), Expect = 1e-06
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+I T+ L+ LK+L DD A+ D+M+ DS+ G ++
Sbjct: 116 HSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFDSNNDGKLELT 167
Score = 42.9 bits (101), Expect = 3e-06
Identities = 8/50 (16%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDM------MIAEIDSDGSGTVDFD 89
G+GY+ L+ +++EL L++ + + G +
Sbjct: 29 GSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIV 78
Score = 37.9 bits (88), Expect = 1e-04
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEI-----DSDGSGTVDFD 89
GNGYI + L +LK+L +K + I+ G +
Sbjct: 204 GNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRT 252
Score = 31.0 bits (70), Expect = 0.049
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 14/70 (20%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKI 66
GNGYI + L +LK+L +K + + K+ + K+
Sbjct: 204 GNGYIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSD--------------GGKL 249
Query: 67 SADDLDMMIA 76
DL ++++
Sbjct: 250 YRTDLALILS 259
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 42.1 bits (99), Expect = 4e-06
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+ I + I D D + G V +
Sbjct: 122 GDNIIDKHEYSTVYMSYG--IPKSDCDAAFDTLSDGGKTMVTRE 163
Score = 32.5 bits (74), Expect = 0.010
Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 15/59 (25%)
Query: 46 GNGYITTDVLREILKELDD---------------KISADDLDMMIAEIDSDGSGTVDFD 89
+G I D +K++ + D + D + V +
Sbjct: 26 HDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKE 84
Score = 26.7 bits (59), Expect = 1.1
Identities = 12/104 (11%), Positives = 31/104 (29%), Gaps = 21/104 (20%)
Query: 7 GNGYITTDVLREILKEL---DDKISRHPVYQDTYRVTKSTKI---------GNGYITTD- 53
+G I D +K++ + + + K + +T +
Sbjct: 26 HDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEE 85
Query: 54 ---VLREILKELDD-----KISADDLDMMIAEIDSDGSGTVDFD 89
+ E +K ++ + ++ M D+ G +D
Sbjct: 86 WLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 42.4 bits (100), Expect = 5e-06
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
GNG I+ D L + D + + MI+ IDS+ G VDF+
Sbjct: 439 GNGKISVDELASVFGL--DHLESKTWKEMISGIDSNNDGDVDFE 480
Score = 32.7 bits (75), Expect = 0.013
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 8/51 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDF 88
G+G + L + +L D ++D ++ D D +G +D+
Sbjct: 359 GDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAADFDRNGYIDY 409
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 41.6 bits (98), Expect = 9e-06
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT + L + IS + ++ E D + +DFD
Sbjct: 448 KSGKITKEELANLFGL--TSISEKTWNDVLGEADQNKDNMIDFD 489
Score = 34.3 bits (79), Expect = 0.004
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 8/51 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDF 88
G+G + L E L + K +++D ++ E+D D +G +++
Sbjct: 368 GDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVDFDKNGYIEY 418
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 41.2 bits (97), Expect = 1e-05
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I++ L I + ++ +++E+D + G VDFD
Sbjct: 431 NSGKISSTELATIFGV--SDVDSETWKSVLSEVDKNNDGEVDFD 472
Score = 32.7 bits (75), Expect = 0.012
Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 46 GNGYITTDVLREILKE-----------LDDKISADDLDMMIAEIDSDGSGTVDF 88
G+G + L E KE LD ++D ++ +D D +G +++
Sbjct: 348 GDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHEVDQVLDAVDFDKNGYIEY 401
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 40.7 bits (95), Expect = 2e-05
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + + + K + D+ + I G T D +
Sbjct: 118 GDGIVDLEEFQNYCKNFQ--LQCADVPAVYNVITDGGKVTFDLN 159
Score = 25.3 bits (55), Expect = 4.3
Identities = 5/59 (8%), Positives = 16/59 (27%), Gaps = 15/59 (25%)
Query: 46 GNGYITTDVLREILKELDD---------------KISADDLDMMIAEIDSDGSGTVDFD 89
+G I + +++ + D+ + D + V ++
Sbjct: 22 HDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDEWRDLKGRADINKDDVVSWE 80
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 40.2 bits (94), Expect = 2e-05
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 43 TKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ +G + + K D++ + ++ M D++G T+DF
Sbjct: 33 EECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTIDFL 79
Score = 30.9 bits (70), Expect = 0.040
Identities = 10/61 (16%), Positives = 20/61 (32%), Gaps = 17/61 (27%)
Query: 46 GNGYITTDVLREILKELDDKISADD-----------------LDMMIAEIDSDGSGTVDF 88
NG I L +I++ + A +D + +D +G G +
Sbjct: 108 RNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSL 167
Query: 89 D 89
+
Sbjct: 168 N 168
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 40.0 bits (94), Expect = 2e-05
Identities = 11/49 (22%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKEL-----DDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + + L+ L + S + +MIA +D D +G + F+
Sbjct: 12 QDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Score = 34.6 bits (80), Expect = 0.002
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+G + LR+ + + ++S L ++ + G + FD
Sbjct: 83 GSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKN--GRIFFD 124
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY,
metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8
PDB: 2jc2_A
Length = 198
Score = 40.1 bits (94), Expect = 2e-05
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKELD-----DKISADDLDMMIAEIDSDGSGTVDFD 89
+G I D L+ L + + + +M++ +D D SGT+ F+
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 93
Score = 36.3 bits (84), Expect = 6e-04
Identities = 17/115 (14%), Positives = 35/115 (30%), Gaps = 34/115 (29%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQDTYR-------VTKSTKIG------------- 46
+G I D L+ L + P +T R S +G
Sbjct: 45 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFNEFKELWAVLNG 104
Query: 47 ------------NGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + L++ L + ++S ++ + ++ G + FD
Sbjct: 105 WRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTN--GKITFD 157
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A
{Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 39.8 bits (93), Expect = 4e-05
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKEL-DDKISADDL----DMMIAEIDSDGSGTVDFD 89
+ I+ D L ++L+ + IS + L D I E D DG + F
Sbjct: 126 KDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFT 174
Score = 32.4 bits (74), Expect = 0.014
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG ++ + + I EL D +I S+G V+F
Sbjct: 42 ENGTLSREDFQRIP-ELAINPLGDR---IINAFFSEGEDQVNFR 81
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 38.2 bits (89), Expect = 1e-04
Identities = 8/50 (16%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 46 GNGYITTDVLREILKELDDKISADD------LDMMIAEIDSDGSGTVDFD 89
GNG I + L ++ + ++++ +ID + G + +
Sbjct: 106 GNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFHKIDINNDGELTLE 155
Score = 35.9 bits (83), Expect = 7e-04
Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDFD 89
+G T + +L A+ D + D++ G VDF
Sbjct: 33 PSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFL 77
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 37.8 bits (88), Expect = 1e-04
Identities = 9/45 (20%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDFD 89
+G +T ++ + SA+ + M D + G +DF
Sbjct: 28 PSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFM 72
Score = 36.7 bits (85), Expect = 3e-04
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 46 GNGYITTDVLREILKELDDKISADD-------LDMMIAEIDSDGSGTVDFD 89
GNG I L I+K + ++ +M+ +ID +G G + +
Sbjct: 101 GNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSLE 151
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 37.7 bits (87), Expect = 2e-04
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI+ L+ LK+L + D M+ D + G +D +
Sbjct: 117 SSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFDKNKDGRLDLN 168
Score = 37.4 bits (86), Expect = 3e-04
Identities = 4/52 (7%), Positives = 14/52 (26%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDFD 89
G + + +K++ + ++ D + G +
Sbjct: 209 RTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKS 260
Score = 34.3 bits (78), Expect = 0.004
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDM----------MIAEIDSDGSGTVDFD 89
NGYI L + + + K+ D ++ D+ G + +
Sbjct: 24 DNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIE 77
Score = 27.0 bits (59), Expect = 1.2
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 18/101 (17%)
Query: 7 GNGYITTDVLREILKEL------DDKISRHPVYQDTYRVTKST-KIGNGYI--------- 50
NGYI L + + + DKI+ V Q + +G +
Sbjct: 24 DNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATFDGRLQIEELANMI 83
Query: 51 --TTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ I + ++ + + + D+D SG +
Sbjct: 84 LPQEENFLLIFRREAPLDNSVEFMKIWRKYDADSSGYISAA 124
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 37.0 bits (86), Expect = 3e-04
Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKEL-----DDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I D L+ L + + + +M++ +D D SGT+ F+
Sbjct: 14 QDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 62
Score = 35.1 bits (81), Expect = 0.001
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G + L++ L + +++ ++ + + G + FD
Sbjct: 85 RSGTVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGK--ITFD 126
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 37.1 bits (86), Expect = 3e-04
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILK--------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+I + L+E++ L + + +D + D G +D D
Sbjct: 124 QTGFIEREELKEMVVALLHESELVLSEDMIEVMVDKAFVQADRKNDGKIDID 175
Score = 30.5 bits (69), Expect = 0.067
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
S+ I +G I + + L ++ + D + D +G ++F
Sbjct: 48 SSIIDDGLIHKEEFQLALFRNRNRRNLF-ADRIFDVFDVKRNGVIEFG 94
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 37.1 bits (86), Expect = 3e-04
Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILK--------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
G+I +++++ L D + D +D E D+ G +D +
Sbjct: 135 QQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDKTFEEADTKHDGKIDKE 186
Score = 30.2 bits (68), Expect = 0.090
Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 42 STKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
S I +G I + + L + + K S D + D+ +G + F+
Sbjct: 59 SAVIDDGLINKEEFQLALFKTNKKES-LFADRVFDLFDTKHNGILGFE 105
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 36.2 bits (84), Expect = 5e-04
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 8/52 (15%)
Query: 46 GNGYITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDFD 89
+ ++ L IL ++ D D M+A +DSD +G + F+
Sbjct: 16 DDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFE 67
Score = 35.9 bits (83), Expect = 6e-04
Identities = 11/44 (25%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G I + L + ++ M+I SD G +DFD
Sbjct: 90 RSGTIGSSELPGAFEAAGFHLNEHLYSMIIRR-YSDEGGNMDFD 132
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell
junction, cell projection, coiled coil, endocytosis,
membrane, phosphoprotein; NMR {Homo sapiens}
Length = 111
Score = 34.7 bits (80), Expect = 0.001
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G++T R IL + + L + D D G + +
Sbjct: 27 MSGHLTGPQARTILMQS--SLPQAQLASIWNLSDIDQDGKLTAE 68
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 46 GNGYITTDVLREILKEL-----DDKISADDL----DMMIAEIDSDGSGTVDFD 89
+G + + L ++ L D ++SA ++ D ++ E D D GT++
Sbjct: 111 DDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 33.9 bits (78), Expect = 0.002
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+++ +REI + + + L + + D+ G + D
Sbjct: 23 MDGFVSGLEVREIFLKT--GLPSTLLAHIWSLCDTKDCGKLSKD 64
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium,
RAS signal transduction, endocytosis/exocytosis
complex; NMR {Mus musculus} SCOP: a.39.1.6
Length = 92
Score = 33.5 bits (77), Expect = 0.002
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG+I +E + K+ +L + D D G + D
Sbjct: 22 LNGFIPGSAAKEFFTKS--KLPILELSHIWELSDFDKDGALTLD 63
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain,
POB1 EH domain, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Length = 110
Score = 34.0 bits (78), Expect = 0.002
Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ +I+ V + + K+S +L + D+D G +
Sbjct: 35 PSSFISGSVAKNFFTKS--KLSIPELSYIWELSDADCDGALTLP 76
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 34.1 bits (78), Expect = 0.003
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Query: 46 GNGYITTDVLREILKEL-----DDKISADDL----DMMIAEIDSDGSGTVDFD 89
+G + + L ++ L D ++SA ++ D ++ E D D GT++
Sbjct: 142 DDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 194
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 33.7 bits (77), Expect = 0.005
Identities = 9/44 (20%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDF 88
+G+++ + ++I A + + D++G GT+DF
Sbjct: 39 PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTIDF 82
Score = 30.2 bits (68), Expect = 0.089
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILKEL-----------DDKISADDL-DMMIAEIDSDGSGTVDFD 89
GNGYI+ + EI++ + +D+ + + + + ++D++ G + +
Sbjct: 112 GNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTNRDGKLSLE 167
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 33.3 bits (76), Expect = 0.007
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYIT + + +I+K L + ++ ++D + G V D
Sbjct: 151 KDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTID 206
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 33.4 bits (77), Expect = 0.007
Identities = 5/49 (10%), Positives = 10/49 (20%), Gaps = 3/49 (6%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRK 94
+ I + + L +A + G R
Sbjct: 395 ESACIAYIRITQYLDAGGIPRTAQSE---ETRVWHRRDGKWQIVHFHRS 440
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 31.7 bits (72), Expect = 0.011
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 42 STKIGNG-YITTDVLREIL-KELDDKISADDLDMMIAEIDSDGSGTVDFD 89
S GN + D L+++L E I D+ E+D + G V+F
Sbjct: 20 SLIKGNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 32.5 bits (74), Expect = 0.011
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYIT D + I+ D+ + + +D + G + D
Sbjct: 112 HDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLD 167
Score = 24.4 bits (53), Expect = 6.9
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 2/84 (2%)
Query: 6 AGNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDK 65
+G + + +I K+ S + V NG+I + +L
Sbjct: 38 CPSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKD--NNGFIHFEEFITVLSTTSRG 95
Query: 66 ISADDLDMMIAEIDSDGSGTVDFD 89
+ L D + G + FD
Sbjct: 96 TLEEKLSWAFELYDLNHDGYITFD 119
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 32.6 bits (74), Expect = 0.012
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI + + +I+K L + +D+ ++D + G V D
Sbjct: 138 KDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 193
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2,
protein structure initiative, northeast structural
genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Length = 121
Score = 31.7 bits (72), Expect = 0.015
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G+IT D R + + L + A D + G +D
Sbjct: 45 ISGFITGDQARNFFFQS--GLPQPVLAQIWALADMNNDGRMDQV 86
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 32.3 bits (73), Expect = 0.015
Identities = 10/56 (17%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+G IT + + I+K L + + ++ ++D + G V D
Sbjct: 178 KDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQDGVVTID 233
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand,
EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB:
2jxc_A 1f8h_A 1ff1_A
Length = 106
Score = 31.3 bits (71), Expect = 0.017
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 46 GNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG+++ D ++ +L L+ K+ D L + D D G +D D
Sbjct: 27 VNGFLSGDKVKPVL--LNSKLPVDILGRVWELSDIDHDGMLDRD 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.019
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 20/82 (24%)
Query: 10 YITTD--VLRE----ILKELDDKISRHPVYQDTYRVTKSTKI---------GNGYITTDV 54
Y T D LR I + + D I R PV +T K+T I G G +T
Sbjct: 460 YDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRN 519
Query: 55 L-----REILKELDDKISADDL 71
R I+ D DD
Sbjct: 520 KDGTGVRVIVAGTLDINPDDDY 541
Score = 31.9 bits (72), Expect = 0.024
Identities = 18/111 (16%), Positives = 34/111 (30%), Gaps = 29/111 (26%)
Query: 4 PGAG-NGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKEL 62
G G + Y T+ +++ D H ++DTY G+ D++ L
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRAD----NH--FKDTY----------GFSILDIVINNPVNL 1672
Query: 63 -------DDKISADDLDMMIAEIDSDGSGTV-----DFDVIQRKILILAPE 101
K ++ MI E DG + + + +
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.7 bits (71), Expect = 0.027
Identities = 14/92 (15%), Positives = 36/92 (39%), Gaps = 24/92 (26%)
Query: 14 DVLREILKELDDKISRHPVYQDTYRVTK-------STKIGNGYITTDV---LREILKELD 63
+ E+ +L+++ + H D Y + K + Y + + L+ I E
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI--EHP 487
Query: 64 DKISADDLDMMIAEIDSDGSGTVDFDVIQRKI 95
++++ + + +DF +++KI
Sbjct: 488 ERMT------LFRMV------FLDFRFLEQKI 507
Score = 28.7 bits (63), Expect = 0.40
Identities = 30/143 (20%), Positives = 46/143 (32%), Gaps = 54/143 (37%)
Query: 14 DVLREILKE---------LDD--------------KI---SRHPVYQDTYRVTKSTKI-- 45
LR +LK L + KI +R D +T I
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 46 --GNGYITTDVLREIL-KELDDKISADDL--DM---------MIAEIDSDGSGTVDF--- 88
+ +T D ++ +L K LD DL ++ +IAE DG T D
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 89 -------DVIQRKILILAPETAR 104
+I+ + +L P R
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYR 372
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 31.3 bits (71), Expect = 0.033
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
NG I+ D + I+ D+ ++ + +D + G + +
Sbjct: 112 NNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLE 167
Score = 31.3 bits (71), Expect = 0.034
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDFDVIQR 93
+G++ ++I K+ + + D+D +G +DF
Sbjct: 39 PSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNGYIDFKEFIC 87
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 31.0 bits (70), Expect = 0.036
Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYIT + + +I+ ++ +D + A +D + G +
Sbjct: 112 NDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQ 167
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 30.3 bits (68), Expect = 0.065
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 1/58 (1%)
Query: 46 GNGYITTDVLREILKELDDKISADDL-DMMIAEIDSDGSGTVDFDVIQRKILILAPET 102
G IT + I + + DS+ GT+DF + +
Sbjct: 47 PTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKEYVIALHMTTAGK 104
Score = 28.8 bits (64), Expect = 0.26
Identities = 8/58 (13%), Positives = 20/58 (34%), Gaps = 14/58 (24%)
Query: 46 GNGYITTDVLREILKELDDKISADDL--------------DMMIAEIDSDGSGTVDFD 89
GNG I+ + + EI+ + I+ +D+ + + + +
Sbjct: 120 GNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEK 177
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 29.8 bits (67), Expect = 0.092
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 12/56 (21%)
Query: 46 GNGYITTDVLREILK------------ELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+GYI + + +I+K L + +D+ ++D + G V D
Sbjct: 105 KDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLD 160
Score = 24.4 bits (53), Expect = 8.2
Identities = 9/83 (10%), Positives = 24/83 (28%), Gaps = 2/83 (2%)
Query: 7 GNGYITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKI 66
+G + + ++I + + +T G + + L L
Sbjct: 32 PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTT--QTGSVKFEDFVTALSILLRGT 89
Query: 67 SADDLDMMIAEIDSDGSGTVDFD 89
+ L D + G ++ +
Sbjct: 90 VHEKLRWTFNLYDINKDGYINKE 112
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 30.1 bits (67), Expect = 0.11
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 8/51 (15%)
Query: 47 NGYITTDVLREIL-----KELDDKISADDLD---MMIAEIDSDGSGTVDFD 89
+ ++ L IL + D K +D M+A +DSD +G + F+
Sbjct: 744 DMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSDTTGKLGFE 794
Score = 27.8 bits (61), Expect = 0.59
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 47 NGYITTDVLREIL-----KELDDKISADDLD---MMIAEIDSDGSGTVDFDVIQR 93
+ I+ L+ IL K D + + L+ M+ +D DG+G +
Sbjct: 547 DMEISVKELQTILNRIISKHKDLRTNGFSLESCRSMVNLMDRDGNGKLGLVEFNI 601
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.1 bits (63), Expect = 0.17
Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 42 STKIGN-GYITTDVLREIL-KELDDKI-SADDLDMMIAEIDSDGSGTVDFD 89
+ K G+ ++ + L++++ E + LD + E+D +G G V F+
Sbjct: 17 AAKEGDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFE 67
>3a8r_A Putative uncharacterized protein; EF-hand, membrane,
oxidoreductase, transmembrane, calcium BI protein; 2.40A
{Oryza sativa japonica group}
Length = 179
Score = 29.3 bits (65), Expect = 0.17
Identities = 11/63 (17%), Positives = 27/63 (42%)
Query: 39 VTKSTKIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILIL 98
+ + I +T D L++ ++L D+ + L +D + G + + ++ I +
Sbjct: 68 LARKRGIVKQVLTKDELKDFYEQLTDQGFDNRLRTFFDMVDKNADGRLTAEEVKEIIALS 127
Query: 99 APE 101
A
Sbjct: 128 ASA 130
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 28.6 bits (64), Expect = 0.18
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 48 GYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
GY+T + LR ++++ L+++ +D ++ ++D G V F
Sbjct: 23 GYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 28.7 bits (64), Expect = 0.22
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 47 NGYITTDVLREILKELD------DKISADDLDMMIAEIDSDGSGTVDFD 89
I L+ +L + D S D+ ++A ++ +G +D +
Sbjct: 18 GSDIDATQLQGLLNQELLTGPPGDMFSLDECRSLVALMELKVNGRLDQE 66
Score = 28.7 bits (64), Expect = 0.23
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 46 GNGYITTDVLREILKELDD----KISADDLDMMIAEIDSDGSGTVDFD 89
G + + L + ++ D IS + L ++ SD G V F
Sbjct: 88 SPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTLR-YSDSVGRVSFP 134
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 27.9 bits (62), Expect = 0.31
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ L+E+L L + +++ +DS+ VDF
Sbjct: 26 KFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 73
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes,
cation-PI interactions, classical hydrogen bonds,
protein binding; 1.80A {Archaeoglobus fulgidus} SCOP:
c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Length = 275
Score = 28.3 bits (63), Expect = 0.36
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%)
Query: 6 AGNGYITTD--VLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELD 63
Y TTD V LK L+D P Y V +T + L +LK L+
Sbjct: 186 VIPAY-TTDSRVDLFNLKILEDDKGALPPYDAIIIVNGNTA------KDEKLISVLKLLE 238
Query: 64 DKISADDLDMMIAEIDSDG 82
D+I D + + + D +
Sbjct: 239 DRIDTDTMRALNYQYDVEK 257
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 27.5 bits (61), Expect = 0.42
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 42 STKIGN-GYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
S K G+ + L+E+L L + +++ +DS+ VDF
Sbjct: 23 SGKEGDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 76
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 27.1 bits (60), Expect = 0.58
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
++ L+++L+ LD + AD +D ++ E+D +G G VDF
Sbjct: 25 KYKLSKKELKDLLQTELSSFLDVQKDADAVDKIMKELDENGDGEVDFQ 72
>3o66_A Glycine betaine/carnitine/choline ABC transporter; structural
genomics, PSI-2, protein structure initiative; HET: PGE;
1.86A {Staphylococcus aureus subsp}
Length = 282
Score = 27.6 bits (61), Expect = 0.65
Identities = 17/73 (23%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 12 TTD--VLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKISAD 69
+TD + LK L D P Y + T L+ + +L KIS
Sbjct: 197 STDGRIAAYDLKVLKDDKQFFPPYAASAVATNEL-----LRQHPELKTTINKLTGKISTS 251
Query: 70 DLDMMIAEIDSDG 82
++ + E D G
Sbjct: 252 EMQRLNYEADGKG 264
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 27.1 bits (60), Expect = 0.66
Identities = 10/54 (18%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 42 STKIGNGY-ITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ + G+ Y + L+E+L++ + D + ++ +D++ VDF
Sbjct: 20 AGRCGDKYKLCQAELKELLQKELATWTPTEFRECDYNKFMSVLDTNKDCEVDFV 73
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 26.7 bits (59), Expect = 0.76
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 46 GNGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
I+ RE+L++ L D + D +I +D++ G + FD
Sbjct: 27 VKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFD 75
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 26.8 bits (59), Expect = 0.78
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 42 STKIGN-GYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
S K G+ + L+E+L L + +++ +DS+ VDF
Sbjct: 32 SGKEGDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 85
>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain,
NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum
polycephalum}
Length = 243
Score = 27.2 bits (61), Expect = 0.83
Identities = 11/55 (20%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Query: 17 REIL--KELDDKISRHPVYQDTYRVTKSTKI---GNGYITTDVLREILKELDDKI 66
+IL ELDD ++ ++ Y + G G+++ D++++ I
Sbjct: 158 DDILLRTELDDMAKKYSNFKVYYVLNNPPAGWTGGVGFVSADMIKQHFSPPSSDI 212
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 26.6 bits (59), Expect = 0.93
Identities = 5/36 (13%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 54 VLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ +E+ + +D ++ +D + +DF
Sbjct: 38 IKKELCLGEMKE---SSIDDLMKSLDKNSDQEIDFK 70
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 27.5 bits (60), Expect = 0.95
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 49 YITTDVLREILKEL--------DDKISADDLDMMIAEIDSDGSGTVDFD 89
I+ L+ IL+ + D S + +M+ +D DGSG +
Sbjct: 547 EISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLK 595
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 27.0 bits (60), Expect = 1.1
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 53 DVLREILKE----LDDKISADDLDMMIAEIDSDGSGTVDFDVIQRKILILAP 100
+ + ++++ L S L M DGS I +L P
Sbjct: 192 EWIEVMIEDARAGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLRP 243
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 26.3 bits (58), Expect = 1.1
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ L+E++ L++ + +D ++ +DS+G G DF
Sbjct: 25 KHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQ 72
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 26.3 bits (58), Expect = 1.2
Identities = 7/51 (13%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 42 STKIGN-GYITTDVLREIL-KELDDKI-SADDLDMMIAEIDSDGSGTVDFD 89
+ + G ++ + +E++ ++L + LD + +D + + F+
Sbjct: 32 ARQEGRKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFN 82
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold,
dioxygenase, iron, mRNP complex, prolyl hydroxylase;
HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A
3kt4_A 3mgu_A
Length = 633
Score = 27.2 bits (59), Expect = 1.2
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 11 ITTDVLREILKELDDKISRHPVYQDTYRVTKSTKIGN 47
+ D+LR + KE++ +I D YRV +S + N
Sbjct: 43 VNDDLLRAVRKEIETEIHFTKKETDIYRVNQSGDLAN 79
>3r6u_A Choline-binding protein; substrate binding protein,
ABC-transporter, extracellular, transport protein; 1.61A
{Bacillus subtilis} PDB: 3ppq_A 3ppo_A* 3ppp_A 3ppn_A
3ppr_A*
Length = 284
Score = 26.8 bits (59), Expect = 1.3
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 12 TTD--VLREILKELDDKISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKELDDKISAD 69
+TD + LK L D P Y + V + L I+K++ KI
Sbjct: 198 STDGRIKSYGLKMLKDDKQFFPPYDCSPVVPEKV-----LKEHPELEGIIKKMLGKIDTA 252
Query: 70 DLDMMIAEIDSDG 82
+ + E+D +
Sbjct: 253 TMQELNYEVDGNL 265
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 114
Score = 26.4 bits (58), Expect = 1.3
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 26 KISRHPVYQDTYRVTKSTKIGNGYITTDVLREILKEL 62
+ RH + T+S + NG + V R L +
Sbjct: 11 TLLRHEGIETVSYATQSLVVANGGLGNGVSRNQLLPV 47
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex,
transferase; HET: MSE TPP; 2.00A {Streptomyces
clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB:
1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Length = 573
Score = 26.7 bits (60), Expect = 1.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 24 DDKISRHPVYQDTYRVTKSTKI-GNGYITTDV 54
+D + H V V + G G I +D+
Sbjct: 379 EDGMRVHQVIDSMNTVMEEAAEPGEGTIVSDI 410
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 26.0 bits (57), Expect = 1.5
Identities = 8/55 (14%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 42 STKIGN-GYITTDVLREIL-KEL-----DDKISADDLDMMIAEIDSDGSGTVDFD 89
S K+G+ + +E++ K+L + + ++ ++ ++D++ + F+
Sbjct: 22 SVKLGHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFE 76
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 25.9 bits (57), Expect = 1.5
Identities = 7/35 (20%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 55 LREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
L D K + L + + D + +DF
Sbjct: 39 FPNFLSACDKK-GTNYLADVFEKKDKNEDKKIDFS 72
>3s1x_A Probable transaldolase; alpha-beta barrel, conformational
selection, domain swapping transferase; HET: I22; 1.65A
{Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A*
3s1w_A*
Length = 223
Score = 26.4 bits (59), Expect = 1.6
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 53 DVLREILKELDDKIS----ADDLDMMIAE 77
D++REILK +D +S + + M+ E
Sbjct: 44 DIIREILKIVDGPVSVEVVSTKYEGMVEE 72
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like
domain, actin binding protein, contractIle protein;
20.00A {Gallus gallus} SCOP: i.15.1.1
Length = 863
Score = 26.8 bits (58), Expect = 1.6
Identities = 7/46 (15%), Positives = 18/46 (39%)
Query: 44 KIGNGYITTDVLREILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+ G + + R L + + + +++ +D + G V F
Sbjct: 736 RKKTGMMDCEDFRACLISMGYNMGEAEFARIMSIVDPNRMGVVTFQ 781
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 25.9 bits (57), Expect = 1.8
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 56 REILKELDDKISADDLDMMIAEIDSDGSGTVDFD 89
+E+ + + +D + +D++ VDF
Sbjct: 42 KELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQ 75
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.5 bits (56), Expect = 1.8
Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
+T L+ ++++ L D +D ++ ++D++G VDF
Sbjct: 25 TQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFS 72
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 25.6 bits (56), Expect = 1.9
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
N I+ + ++ LD M+ ++D D G +DF
Sbjct: 29 NTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQ 76
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 25.6 bits (56), Expect = 2.2
Identities = 9/48 (18%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 47 NGYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
++ L+E+L L + ++ ++ ++DS+ VDF+
Sbjct: 26 KYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFN 73
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 25.7 bits (56), Expect = 2.3
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 12/56 (21%)
Query: 46 GNGYI--------TTDVLREILKELDDKISADDL----DMMIAEIDSDGSGTVDFD 89
GN + T V +E E +S D+L D ++ + D + G +D+
Sbjct: 81 GNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYIDYA 136
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 26.0 bits (57), Expect = 2.7
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 6 AGNGYITTDVLREILKELDDK 26
GY+ + + +L L ++
Sbjct: 234 GSQGYVPRERIGPVLAVLVEQ 254
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 25.2 bits (55), Expect = 2.7
Identities = 10/54 (18%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Query: 42 STKIGN-GYITTDVLREILKE-----LDDKISADDLDMMIAEIDSDGSGTVDFD 89
S++ G+ ++ ++E+L + + +K+ + L ++ +D + VDF
Sbjct: 21 SSQEGDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQ 74
>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural
genomics, JOI for structural genomics, JCSG; HET: GOL;
2.40A {Thermotoga maritima} SCOP: c.1.10.1
Length = 230
Score = 25.6 bits (57), Expect = 3.5
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 53 DVLREILKELDDKIS----ADDLDMMIAE 77
++EI + +S + D + M+ E
Sbjct: 53 QRVKEICDLVKGPVSAEVVSLDYEGMVRE 81
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase,
herbicide, sulfonylurea, thiamin diphosphate, FAD,
inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A
{Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5
c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Length = 677
Score = 25.7 bits (57), Expect = 3.8
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 21 KELDDKISRHPVYQDTYRVTKSTKIGNGYITTDV 54
+ KI V + +V T + +TT V
Sbjct: 455 ETPGSKIKPQTVIKKLSKVANDTG-RHVIVTTGV 487
>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A
{Bacillus subtilis}
Length = 212
Score = 25.2 bits (56), Expect = 4.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 53 DVLREILKELDDKIS----ADDLDMMIAE 77
D LREI + +S + + MI E
Sbjct: 42 DRLREITDVVKGSVSAEVISLKAEEMIEE 70
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 25.2 bits (55), Expect = 4.6
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 5 GAGNGYITTDVLREILKELDDKIS 28
AG GY++ V+ L L +
Sbjct: 229 AAGGGYVSPSVVNAALDCLTKATN 252
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 25.2 bits (55), Expect = 5.1
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 12/44 (27%)
Query: 5 GAGNGYITTDVLREILK----------ELDDKISRHPVYQDTYR 38
GAG G I +VL+ +L+ +++ + YQ Y
Sbjct: 483 GAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQVTDY--YQSIYA 524
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 24.3 bits (53), Expect = 5.5
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 42 STKIGN-GYITTDVLREIL-KELDDKISADD--LDMMIAEIDSDGSGTVDFD 89
S + G+ ++ L+E++ KEL D + ++ ++D + V+F
Sbjct: 20 SGREGDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQ 71
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes
thetaiotaomicron, protein structure initiative II(PSI
II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Length = 357
Score = 24.5 bits (53), Expect = 9.0
Identities = 4/26 (15%), Positives = 8/26 (30%)
Query: 57 EILKELDDKISADDLDMMIAEIDSDG 82
E K++ I+ + G
Sbjct: 263 ENKKKMAGAITNPMIQEAFDVATGAG 288
>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel,
FAD-binding domain, NADH-binding domain, oxidoreductase;
HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1
PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*
Length = 275
Score = 24.3 bits (53), Expect = 9.1
Identities = 8/49 (16%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Query: 21 KELDDKISRHPV-YQDTYRVTKST---KIGNGYITTDVLREILKELDDK 65
EL++ ++H ++ Y + ++ G G++ +++R+ L +++
Sbjct: 194 PELEELRNKHSARFKLWYTLDRAPEAWDYGQGFVNEEMIRDHLPPPEEE 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.138 0.379
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,726,885
Number of extensions: 101527
Number of successful extensions: 852
Number of sequences better than 10.0: 1
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 316
Length of query: 104
Length of database: 6,701,793
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,775,244
Effective search space: 167133540
Effective search space used: 167133540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (23.3 bits)