BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13836
(96 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O00116|ADAS_HUMAN Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo
sapiens GN=AGPS PE=1 SV=1
Length = 658
Score = 125 bits (314), Expect = 7e-29, Method: Composition-based stats.
Identities = 54/88 (61%), Positives = 69/88 (78%)
Query: 9 LLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68
LLF D E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD A +YY +G+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGES 527
Query: 69 FETSVPWDKTVLLCINVKKRLTRECTEK 96
FETS PWD+ V LC NVK+R+TREC EK
Sbjct: 528 FETSAPWDRVVDLCRNVKERITRECKEK 555
>sp|P97275|ADAS_CAVPO Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Cavia
porcellus GN=AGPS PE=1 SV=1
Length = 658
Score = 122 bits (305), Expect = 9e-28, Method: Composition-based stats.
Identities = 52/88 (59%), Positives = 67/88 (76%)
Query: 9 LLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68
LLF D E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY IG+S
Sbjct: 468 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGES 527
Query: 69 FETSVPWDKTVLLCINVKKRLTRECTEK 96
FETS PWD+ V LC NVK+R+ REC EK
Sbjct: 528 FETSAPWDRVVDLCRNVKERIRRECKEK 555
>sp|Q8C0I1|ADAS_MOUSE Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Mus
musculus GN=Agps PE=1 SV=1
Length = 645
Score = 121 bits (303), Expect = 2e-27, Method: Composition-based stats.
Identities = 51/88 (57%), Positives = 67/88 (76%)
Query: 9 LLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68
LLF D E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAYIRD +YY IG+S
Sbjct: 455 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLGLEYYVIGES 514
Query: 69 FETSVPWDKTVLLCINVKKRLTRECTEK 96
FETS PWD+ + LC NVK+R+ REC E+
Sbjct: 515 FETSAPWDRVIDLCRNVKERIRRECKER 542
>sp|Q9EQR2|ADAS_RAT Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Rattus
norvegicus GN=Agps PE=2 SV=1
Length = 644
Score = 119 bits (298), Expect = 5e-27, Method: Composition-based stats.
Identities = 49/88 (55%), Positives = 67/88 (76%)
Query: 9 LLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68
LLF D E V +E ++Y IA ++GG+ AGE NG+RGY+LTY+IAY+RD +YY +G+S
Sbjct: 454 LLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYVVGES 513
Query: 69 FETSVPWDKTVLLCINVKKRLTRECTEK 96
FETS PWD+ + LC NVK+R+ REC E+
Sbjct: 514 FETSAPWDRVIDLCRNVKERIRRECKER 541
>sp|Q9V778|ADAS_DROME Alkyldihydroxyacetonephosphate synthase OS=Drosophila melanogaster
GN=CG10253 PE=2 SV=1
Length = 631
Score = 105 bits (263), Expect = 7e-23, Method: Composition-based stats.
Identities = 46/88 (52%), Positives = 63/88 (71%)
Query: 9 LLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68
LLF D +DV+ E IY IA+++ G PAG NG RGY+LT++IAYIRDF + +S
Sbjct: 420 LLFEGDLKDVQRQEALIYEIAEKFQGFPAGGQNGERGYILTFVIAYIRDFGLHQGIVAES 479
Query: 69 FETSVPWDKTVLLCINVKKRLTRECTEK 96
FETSVPWD+ LLC +VK+R+ EC+++
Sbjct: 480 FETSVPWDRCSLLCRSVKQRVVSECSKR 507
>sp|O45218|ADAS_CAEEL Alkyldihydroxyacetonephosphate synthase OS=Caenorhabditis elegans
GN=ads-1 PE=2 SV=1
Length = 597
Score = 84.0 bits (206), Expect = 2e-16, Method: Composition-based stats.
Identities = 35/77 (45%), Positives = 55/77 (71%)
Query: 16 EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 75
E+V +E+++ +A+++ G+ G NG+ GY LT+ IAY+RD ++ +G+SFETSVPW
Sbjct: 404 EEVDQHEERLNKLAEQFHGVVGGAENGQYGYRLTFAIAYLRDLGMNHGVLGESFETSVPW 463
Query: 76 DKTVLLCINVKKRLTRE 92
DK + LC NVK+ + RE
Sbjct: 464 DKVLSLCRNVKELMKRE 480
>sp|O97157|ADAS_TRYBB Alkyldihydroxyacetonephosphate synthase OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 613
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 30/72 (41%)
Query: 24 KIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCI 83
++ + + +G G G Y + Y+RDFA + F D FETSV + +
Sbjct: 405 ELVGVFQAFGATCLGTKPGNTWQEKKYDLPYLRDFALAHNFWADVFETSVLYTDAIHCWR 464
Query: 84 NVKKRLTRECTE 95
VKK E
Sbjct: 465 AVKKSFAEVMAE 476
>sp|P13785|FLP_ZYGRO Recombinase Flp protein OS=Zygosaccharomyces rouxii GN=R PE=3 SV=1
Length = 490
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 5 PLRMLLFISDPEDVKNNEDKIYSIAKRYG-GIPAGESNGRRGYMLTYIIAYIRDFACDYY 63
P+ +L+F+S KNNE K Y + R G+P NGR A+++
Sbjct: 423 PMDVLVFLSSYARFKNNEGKEYKLQARSSRGVPDFPDNGRTALYNALTAAHVKRRKIS-I 481
Query: 64 FIGDSFETS 72
+G S +TS
Sbjct: 482 VVGRSIDTS 490
>sp|Q13E22|MNME_RHOPS tRNA modification GTPase MnmE OS=Rhodopseudomonas palustris (strain
BisB5) GN=mnmE PE=3 SV=2
Length = 460
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 32 YGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVL 80
+GG A E + RG L +IA I DFA Y+ G++ S +T+L
Sbjct: 357 WGGNAAFEISALRGQGLGELIAAIEDFAAQYFASGETALISRARHRTLL 405
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.141 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,265,823
Number of Sequences: 539616
Number of extensions: 1406973
Number of successful extensions: 3006
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2998
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 191,569,459
effective HSP length: 66
effective length of query: 30
effective length of database: 155,954,803
effective search space: 4678644090
effective search space used: 4678644090
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)