Query psy13836
Match_columns 96
No_of_seqs 103 out of 271
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:40:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1233|consensus 99.9 1.8E-22 3.9E-27 160.2 4.9 95 2-96 416-510 (613)
2 PF02913 FAD-oxidase_C: FAD li 98.9 1.2E-09 2.5E-14 77.8 3.8 89 3-91 58-153 (248)
3 TIGR00387 glcD glycolate oxida 98.4 8.8E-07 1.9E-11 69.9 6.2 84 4-91 231-319 (413)
4 PRK11230 glycolate oxidase sub 98.1 1.1E-05 2.4E-10 65.5 6.9 83 4-90 288-375 (499)
5 PLN02805 D-lactate dehydrogena 97.8 7.5E-05 1.6E-09 61.7 7.5 85 4-91 363-453 (555)
6 COG3286 Uncharacterized protei 93.5 0.39 8.4E-06 35.5 6.5 86 7-92 39-135 (204)
7 PF09840 DUF2067: Uncharacteri 83.2 9.2 0.0002 27.8 7.3 85 7-91 36-131 (190)
8 KOG4179|consensus 53.8 5.3 0.00011 33.1 0.5 39 38-77 480-529 (568)
9 cd07947 DRE_TIM_Re_CS Clostrid 51.5 27 0.00059 26.5 4.1 71 17-88 112-198 (279)
10 PF13289 SIR2_2: SIR2-like dom 50.1 26 0.00056 22.6 3.3 28 2-29 85-112 (143)
11 cd00248 Mth938-like Mth938-lik 49.5 7.9 0.00017 25.4 0.7 29 45-73 61-89 (109)
12 COG5405 HslV ATP-dependent pro 48.2 22 0.00047 25.8 2.8 56 7-67 46-103 (178)
13 COG1071 AcoA Pyruvate/2-oxoglu 44.3 59 0.0013 26.0 5.0 69 16-93 234-323 (358)
14 PF12738 PTCB-BRCT: twin BRCT 40.9 14 0.0003 21.2 0.8 27 6-38 3-29 (63)
15 PF05651 Diacid_rec: Putative 37.0 73 0.0016 21.7 4.0 28 2-29 80-107 (135)
16 cd05560 Xcc1710_like Xcc1710_l 36.4 18 0.0004 23.7 0.9 29 45-73 61-89 (109)
17 CHL00123 rps6 ribosomal protei 36.1 66 0.0014 20.6 3.5 63 5-72 10-72 (97)
18 COG3010 NanE Putative N-acetyl 35.4 56 0.0012 24.7 3.4 72 8-90 155-227 (229)
19 cd07045 BMC_CcmK_like Carbon d 33.9 97 0.0021 19.4 4.0 30 6-35 38-67 (84)
20 PF14257 DUF4349: Domain of un 32.3 67 0.0015 23.7 3.5 76 16-91 59-143 (262)
21 TIGR00109 hemH ferrochelatase. 31.8 51 0.0011 25.4 2.9 63 5-72 189-278 (322)
22 PF01218 Coprogen_oxidas: Copr 31.4 74 0.0016 24.9 3.7 77 14-93 133-209 (296)
23 COG1647 Esterase/lipase [Gener 29.7 55 0.0012 25.0 2.6 25 3-27 16-40 (243)
24 PLN02269 Pyruvate dehydrogenas 29.5 2.2E+02 0.0049 22.5 6.2 45 42-94 279-323 (362)
25 COG0277 GlcD FAD/FMN-containin 28.3 1.8E+02 0.0039 22.6 5.5 83 5-91 269-358 (459)
26 cd00886 MogA_MoaB MogA_MoaB fa 27.5 1.1E+02 0.0023 20.8 3.6 38 51-90 21-58 (152)
27 PF01250 Ribosomal_S6: Ribosom 27.4 74 0.0016 19.6 2.6 62 6-72 6-67 (92)
28 PF01766 Birna_VP2: Birnavirus 27.1 5.7 0.00012 32.6 -3.2 49 8-56 120-173 (441)
29 PF06230 DUF1009: Protein of u 26.6 24 0.00052 26.2 0.2 46 3-54 123-169 (214)
30 PRK12378 hypothetical protein; 25.9 1.6E+02 0.0034 22.1 4.5 70 16-86 101-185 (235)
31 TIGR00177 molyb_syn molybdenum 25.4 1.3E+02 0.0028 20.2 3.7 39 50-90 27-65 (144)
32 TIGR03182 PDH_E1_alph_y pyruva 25.0 2.4E+02 0.0052 21.6 5.5 74 12-94 202-296 (315)
33 PF04182 B-block_TFIIIC: B-blo 25.0 64 0.0014 19.5 1.9 21 46-67 30-50 (75)
34 PF00994 MoCF_biosynth: Probab 24.7 1.1E+02 0.0024 20.2 3.2 38 52-91 19-56 (144)
35 PF00676 E1_dh: Dehydrogenase 24.5 3.2E+02 0.0068 20.8 6.0 79 8-94 189-289 (300)
36 PF00487 FA_desaturase: Fatty 24.2 60 0.0013 22.2 1.9 21 71-91 228-248 (257)
37 PRK00453 rpsF 30S ribosomal pr 23.8 1.2E+02 0.0027 19.4 3.3 62 5-71 6-67 (108)
38 PF05172 Nup35_RRM: Nup53/35/4 23.7 8.7 0.00019 25.2 -2.3 68 3-76 6-89 (100)
39 PF01401 Peptidase_M2: Angiote 23.6 1E+02 0.0022 26.2 3.4 44 39-95 186-229 (595)
40 PF02662 FlpD: Methyl-viologen 23.5 1E+02 0.0022 20.6 2.9 48 42-91 71-122 (124)
41 PLN02873 coproporphyrinogen-II 23.2 1.7E+02 0.0036 22.8 4.3 77 14-93 111-187 (274)
42 PF00352 TBP: Transcription fa 22.8 1.9E+02 0.0042 17.7 4.0 27 6-33 60-86 (86)
43 COG3737 Uncharacterized conser 22.7 39 0.00085 23.3 0.7 51 22-77 57-110 (127)
44 cd05782 DNA_polB_like1_exo Unc 22.6 1.4E+02 0.0031 21.4 3.7 39 20-64 80-118 (208)
45 cd07941 DRE_TIM_LeuA3 Desulfob 22.2 1.2E+02 0.0026 22.6 3.3 66 21-89 120-193 (273)
46 PF13368 Toprim_C_rpt: Topoiso 22.0 19 0.00042 21.2 -0.8 16 46-62 10-25 (61)
47 COG5470 Uncharacterized conser 21.9 1E+02 0.0023 20.3 2.5 61 14-85 14-79 (96)
48 PF13250 DUF4041: Domain of un 21.6 1E+02 0.0022 18.0 2.3 24 67-90 12-35 (56)
49 KOG0496|consensus 21.4 1E+02 0.0023 26.7 3.1 61 18-78 144-209 (649)
50 PF00148 Oxidored_nitro: Nitro 21.2 1.7E+02 0.0038 22.5 4.1 50 4-56 145-221 (398)
51 PF11334 DUF3136: Protein of u 21.2 15 0.00033 22.5 -1.4 30 55-85 17-46 (64)
52 TIGR00166 S6 ribosomal protein 21.1 1.4E+02 0.003 18.6 3.0 61 6-72 6-66 (93)
53 cd03511 Rhizopine-oxygenase-li 21.0 54 0.0012 24.4 1.2 21 69-89 253-273 (285)
54 PRK05330 coproporphyrinogen II 20.7 1.7E+02 0.0038 22.9 4.0 77 14-93 138-214 (300)
55 cd05126 Mth938 Mth938 domain. 20.7 41 0.00089 22.4 0.5 48 21-73 47-96 (117)
56 cd05125 Mth938_2P1-like Mth938 20.6 58 0.0013 21.6 1.2 34 35-73 58-91 (114)
57 PF00665 rve: Integrase core d 20.5 2.2E+02 0.0047 17.4 4.7 68 16-88 47-119 (120)
58 cd03509 DesA_FADS-like Fatty a 20.4 80 0.0017 24.0 2.1 23 69-91 237-259 (288)
59 PF13740 ACT_6: ACT domain; PD 20.3 2E+02 0.0044 16.9 4.3 30 4-33 41-70 (76)
60 PF07045 DUF1330: Protein of u 20.3 1E+02 0.0022 17.9 2.1 19 19-37 5-23 (65)
61 PF04304 DUF454: Protein of un 20.3 55 0.0012 19.3 0.9 20 44-63 3-23 (71)
No 1
>KOG1233|consensus
Probab=99.86 E-value=1.8e-22 Score=160.25 Aligned_cols=95 Identities=47% Similarity=0.901 Sum_probs=92.6
Q ss_pred CcccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHH
Q psy13836 2 VKTPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLL 81 (96)
Q Consensus 2 ~~~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l 81 (96)
++.|.+++.|||+.++|+.+++++++|+.+++|+..|..+|+..|..+|.++|+||+-+.+|++.|+|||++|||++..|
T Consensus 416 nqicaATllfEGdre~V~qhE~~~y~iAekF~G~~aG~~NGqrGY~LTfvIAYiRDlgl~~gvlgESFETSvPWDrv~~L 495 (613)
T KOG1233|consen 416 NQICAATLLFEGDREEVDQHEERLYKIAEKFHGVVAGAENGQRGYRLTFVIAYIRDLGLNHGVLGESFETSVPWDRVLSL 495 (613)
T ss_pred hhhhhhhheecccHHHHHHHHHHHHHHHHHhCCccccccccccceEEEEeHHHHHhhcccccchhhcccccCCHHHHHHH
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC
Q psy13836 82 CINVKKRLTRECTEK 96 (96)
Q Consensus 82 ~~~v~~al~~~~~~~ 96 (96)
|++|++.+.++|+++
T Consensus 496 CRnVKer~~rEck~~ 510 (613)
T KOG1233|consen 496 CRNVKERMKRECKAQ 510 (613)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999874
No 2
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.91 E-value=1.2e-09 Score=77.79 Aligned_cols=89 Identities=22% Similarity=0.265 Sum_probs=73.4
Q ss_pred cccEEEEEEecChH-HhHhHHH-HHHHHHHHcCCCc-----CCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccc
Q psy13836 3 KTPLRMLLFISDPE-DVKNNED-KIYSIAKRYGGIP-----AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPW 75 (96)
Q Consensus 3 ~~cll~~gfeG~~~-~v~~~~~-~~~~i~~~~GG~~-----~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~W 75 (96)
..|++++.|+|+++ .++.+.+ .+.++++++|+.. -.+...+-|...++..||+++.....|...+|+|+++||
T Consensus 58 ~~~~llv~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~~~~~~~~~~~~dv~vp~ 137 (248)
T PF02913_consen 58 GGAVLLVEFEGSDEEAVEEQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPYLRDAAGRAGPVWDTEDVAVPP 137 (248)
T ss_dssp TSEEEEEECCCHHHCCHHHHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCGGGCSHCTTEEEEEEEEEESCH
T ss_pred cccEEEEEECCCcHHHHHHHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhcccccccccccCCceeeeeecccc
Confidence 45799999999994 5666666 7888888888764 122345678877777789999999999999999999999
Q ss_pred cchHHHHHHHHHHHHH
Q psy13836 76 DKTVLLCINVKKRLTR 91 (96)
Q Consensus 76 s~~~~l~~~v~~al~~ 91 (96)
++++++++.+++.+.+
T Consensus 138 ~~l~~~~~~~~~~~~~ 153 (248)
T PF02913_consen 138 SRLPEFLREIRALLRE 153 (248)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHhhhhhhhh
Confidence 9999999999988765
No 3
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=98.37 E-value=8.8e-07 Score=69.92 Aligned_cols=84 Identities=14% Similarity=0.132 Sum_probs=66.5
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcC----C-Ccchhhhhhhhchhhhhhhhhhhcccceeeeeccccccch
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPA----G-ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 78 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~----G-~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~ 78 (96)
.|++++.|+|+.+.++.+.+++.++++++|+... + +...+.|...++..|++++.. ...+ +.|+++||+++
T Consensus 231 ~~~l~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~-~~~~---~~d~~vp~~~l 306 (413)
T TIGR00387 231 GAILLVEIDGVHEAVERDEEKIEQICRKNGAVDVQIAQDEEERALLWAGRRNAFKAASKLS-PLYL---IEDGTVPRSKL 306 (413)
T ss_pred ceEEEEEecCCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHHHHHhHHHHHhhC-CCcc---eeEEecCHHHH
Confidence 4789999999999999999999999999988532 1 245667888788788988742 2222 45799999999
Q ss_pred HHHHHHHHHHHHH
Q psy13836 79 VLLCINVKKRLTR 91 (96)
Q Consensus 79 ~~l~~~v~~al~~ 91 (96)
+++++.+++.+.+
T Consensus 307 ~~~~~~~~~~~~~ 319 (413)
T TIGR00387 307 PEALRGIADIARK 319 (413)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999887754
No 4
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=98.08 E-value=1.1e-05 Score=65.55 Aligned_cols=83 Identities=7% Similarity=0.035 Sum_probs=62.7
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCC-----Ccchhhhhhhhchhhhhhhhhhhcccceeeeeccccccch
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAG-----ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 78 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G-----~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~ 78 (96)
.+++++.|+|+++.++.+.+++.++++++|+..+. +...+.|..-+...|+++.. ..+++. .++++||+++
T Consensus 288 ~~~ll~e~~g~~~~v~~~~~~l~~~~~~~g~~~~~~a~~~~~~~~~W~~R~~~~~~~~~~--~~~~~~--~dv~vP~~~l 363 (499)
T PRK11230 288 EAILLCELDGVESDVQEDCERVNDILLKAGATDVRLAQDEAERVRFWAGRKNAFPAVGRI--SPDYYC--MDGTIPRREL 363 (499)
T ss_pred ceEEEEEecCCchHHHHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHhhHHHHHhh--CCCeeE--EeecCChHHH
Confidence 47899999999999999999999999999975332 12345676633456787762 334444 4999999999
Q ss_pred HHHHHHHHHHHH
Q psy13836 79 VLLCINVKKRLT 90 (96)
Q Consensus 79 ~~l~~~v~~al~ 90 (96)
+++++.+++...
T Consensus 364 ~~~~~~~~~~~~ 375 (499)
T PRK11230 364 PGVLEGIARLSQ 375 (499)
T ss_pred HHHHHHHHHHHH
Confidence 999999987554
No 5
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=97.83 E-value=7.5e-05 Score=61.70 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=61.2
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCC--cCCCc---chhhhhhhhchh-hhhhhhhhhcccceeeeeccccccc
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGI--PAGES---NGRRGYMLTYII-AYIRDFACDYYFIGDSFETSVPWDK 77 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~--~~G~~---~g~~W~~~rf~~-pYlRd~l~~~G~~~DTlETA~~Ws~ 77 (96)
.|++++.|+|+++.++.+.+.+.+|++++|+. .+... ..+.|.. |-.. |.+.. ...+....+.++++|||+
T Consensus 363 ~~~Ll~e~~g~~~~~~~~~~~~~~i~~~~g~~~~~~a~~~~e~~~lW~~-R~~~~~~~~~--~~~~~~~~~~DvaVP~s~ 439 (555)
T PLN02805 363 APTLMFEFIGTEAYAREQTLIVQKIASKHNGSDFVFAEEPEAKKELWKI-RKEALWACFA--MEPKYEAMITDVCVPLSH 439 (555)
T ss_pred ceEEEEEEecCcHHHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHH-HHHHHHHHhh--cCCCCceeEEEEEEEHHH
Confidence 48999999999999999999999999999985 22222 2445663 4333 22221 123444567899999999
Q ss_pred hHHHHHHHHHHHHH
Q psy13836 78 TVLLCINVKKRLTR 91 (96)
Q Consensus 78 ~~~l~~~v~~al~~ 91 (96)
++++++.+++.+.+
T Consensus 440 L~e~i~~~~~~~~~ 453 (555)
T PLN02805 440 LAELISRSKKELDA 453 (555)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999887653
No 6
>COG3286 Uncharacterized protein conserved in archaea [Function unknown]
Probab=93.46 E-value=0.39 Score=35.51 Aligned_cols=86 Identities=12% Similarity=0.124 Sum_probs=60.2
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcch-----hhhhhhhchhh--hhhhhhhhccccee----eeeccccc
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNG-----RRGYMLTYIIA--YIRDFACDYYFIGD----SFETSVPW 75 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g-----~~W~~~rf~~p--YlRd~l~~~G~~~D----TlETA~~W 75 (96)
+.+=..|.++.++...+.+.++.+..-+..-+...| .--...+=+.| -|.|.|--+|+=++ -++|++||
T Consensus 39 vkV~v~G~~~eireair~irel~~~vr~r~~~~~~~ly~l~~~~~~a~p~Vp~~vl~daLk~~GyrVevr~~~l~T~ap~ 118 (204)
T COG3286 39 VKVNVFGTKDEIREAIRAIRELHRRVRRRLYPDRQGLYTLYRIFEEASPNVPPDVLIDALKLLGYRVEVRGGELKTNAPW 118 (204)
T ss_pred EEEEEecchHHHHHHHHHHHHHHHHHHhhhccCccceEeeHhHHHhhcCCCCHHHHHHHHHhCCceEEeeCceeecCCCH
Confidence 344567889999999999999888776654332211 11122222233 59999999998764 58999999
Q ss_pred cchHHHHHHHHHHHHHH
Q psy13836 76 DKTVLLCINVKKRLTRE 92 (96)
Q Consensus 76 s~~~~l~~~v~~al~~~ 92 (96)
|-+.++..++-+..+++
T Consensus 119 ~ev~E~vreLse~~~E~ 135 (204)
T COG3286 119 SEVVELVRELSEVYREA 135 (204)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998887776553
No 7
>PF09840 DUF2067: Uncharacterized protein conserved in archaea (DUF2067); InterPro: IPR019202 This family of archaeal proteins, have no known function.
Probab=83.17 E-value=9.2 Score=27.84 Aligned_cols=85 Identities=11% Similarity=0.023 Sum_probs=59.2
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcc-----hhhhhh--hhchhhhhhhhhhhcccce----eeeeccccc
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESN-----GRRGYM--LTYIIAYIRDFACDYYFIG----DSFETSVPW 75 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~-----g~~W~~--~rf~~pYlRd~l~~~G~~~----DTlETA~~W 75 (96)
+.+=..|++.+++...+.+.++.+...+..-+.+. -.--++ ..|..|-|-|.|--.|+=+ |.+.|++||
T Consensus 36 l~I~i~G~~~eike~~~~Ik~~~~~vr~k~~~~g~~~y~l~~i~r~a~~~vp~d~L~~~L~~~G~~ae~~~~~i~T~a~~ 115 (190)
T PF09840_consen 36 LKIEIQGYEKEIKEAIRRIKELVRRVRSKYNKRGLYRYSLDDIFREAGYPVPPDLLVDALKLLGYKAEYREDVIKTDAPL 115 (190)
T ss_pred EEEEEecChHHHHHHHHHHHHHHHHHHHHhccCCceEEcHHHHHHHcCCCCCHHHHHHHHHhCCCeeEEeCCeEEecCCH
Confidence 45566788889988888888887766653222211 111111 3344456899998888765 589999999
Q ss_pred cchHHHHHHHHHHHHH
Q psy13836 76 DKTVLLCINVKKRLTR 91 (96)
Q Consensus 76 s~~~~l~~~v~~al~~ 91 (96)
+.+.++-+++-++..+
T Consensus 116 eev~~l~~~Lse~~~e 131 (190)
T PF09840_consen 116 EEVVELAERLSEIYKE 131 (190)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999877654
No 8
>KOG4179|consensus
Probab=53.77 E-value=5.3 Score=33.14 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=25.4
Q ss_pred CCcchhhhhhhh-------chh-h---hhhhhhhhcccceeeeeccccccc
Q psy13836 38 GESNGRRGYMLT-------YII-A---YIRDFACDYYFIGDSFETSVPWDK 77 (96)
Q Consensus 38 G~~~g~~W~~~r-------f~~-p---YlRd~l~~~G~~~DTlETA~~Ws~ 77 (96)
...|.+.|..+. |+. | |=-..--+.|++.|| ||+..||+
T Consensus 480 dkHPn~~~k~~f~~R~l~afsa~pll~ypthytg~~gylsdt-ets~~w~~ 529 (568)
T KOG4179|consen 480 DKHPNKEYKEHFCARNLVAFSAEPLLIYPTHYTGDSGYLSDT-ETSQQWDN 529 (568)
T ss_pred ccCccHHHHhhcchhhhhhccccceeeeceeecCCCccccCc-cccccccc
Confidence 345666666542 433 3 223345578999998 99999995
No 9
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=51.48 E-value=27 Score=26.54 Aligned_cols=71 Identities=10% Similarity=0.093 Sum_probs=39.2
Q ss_pred HhHhHHHHHHHHHHHcCCCcCCCcchhhhhhh--hchhhhhhhhhh---hccc-----ceeeeecccccc------chHH
Q psy13836 17 DVKNNEDKIYSIAKRYGGIPAGESNGRRGYML--TYIIAYIRDFAC---DYYF-----IGDSFETSVPWD------KTVL 80 (96)
Q Consensus 17 ~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~--rf~~pYlRd~l~---~~G~-----~~DTlETA~~Ws------~~~~ 80 (96)
++-...+.+.+.++++|-. +--.+...++.. -+-.+|+.+++- +.|. ++||...++|++ ++..
T Consensus 112 e~l~~~~~~v~~a~~~g~~-v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~ 190 (279)
T cd07947 112 EAMEKYLEIVEEALDHGIK-PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPK 190 (279)
T ss_pred HHHHHHHHHHHHHHHCCCe-EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHH
Confidence 3444455666777787643 222222233321 122356666433 2554 469999999995 5666
Q ss_pred HHHHHHHH
Q psy13836 81 LCINVKKR 88 (96)
Q Consensus 81 l~~~v~~a 88 (96)
+.+.+++.
T Consensus 191 l~~~l~~~ 198 (279)
T cd07947 191 IIYGLRKD 198 (279)
T ss_pred HHHHHHHh
Confidence 66666554
No 10
>PF13289 SIR2_2: SIR2-like domain
Probab=50.09 E-value=26 Score=22.60 Aligned_cols=28 Identities=7% Similarity=0.056 Sum_probs=20.2
Q ss_pred CcccEEEEEEecChHHhHhHHHHHHHHH
Q psy13836 2 VKTPLRMLLFISDPEDVKNNEDKIYSIA 29 (96)
Q Consensus 2 ~~~cll~~gfeG~~~~v~~~~~~~~~i~ 29 (96)
...+++++||-+.+..+....+.+.+..
T Consensus 85 ~~~~~lfiGys~~D~~i~~~l~~~~~~~ 112 (143)
T PF13289_consen 85 RSKTLLFIGYSFNDPDIRQLLRSALENS 112 (143)
T ss_pred cCCCEEEEEECCCCHHHHHHHHHHHHhc
Confidence 3567899999998887776665555433
No 11
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=49.54 E-value=7.9 Score=25.38 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=24.6
Q ss_pred hhhhhchhhhhhhhhhhcccceeeeeccc
Q psy13836 45 GYMLTYIIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 45 W~~~rf~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+...+|-.|-+++.|.++|+-+|.+.|..
T Consensus 61 G~~~~~~~~~~~~~l~~~gI~vE~m~T~a 89 (109)
T cd00248 61 GAEIAFLPRALRAALRAAGIGVEVMSTGA 89 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEeCcHH
Confidence 44556878899999999999999999973
No 12
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=48.17 E-value=22 Score=25.84 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=40.7
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCC--Ccchhhhhhhhchhhhhhhhhhhccccee
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYIIAYIRDFACDYYFIGD 67 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~g~~W~~~rf~~pYlRd~l~~~G~~~D 67 (96)
++.||-|+..+.-.......+-|+.|.|-..- -+..+.|+.-| |||. |-.+=+++|
T Consensus 46 vlaGFAGstADaftLfe~fe~kle~~~g~L~raavelaKdwr~Dk----~lr~-LEAmllVad 103 (178)
T COG5405 46 VLAGFAGSTADAFTLFERFEAKLEQYQGDLFRAAVELAKDWRTDK----YLRK-LEAMLLVAD 103 (178)
T ss_pred EEEEecccchhHHHHHHHHHHHHHHccCcHHHHHHHHHHhhhhhh----HHHH-HhhheeEeC
Confidence 57899999999888899999999999875432 25678899655 4775 444434433
No 13
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=44.32 E-value=59 Score=26.02 Aligned_cols=69 Identities=9% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHhHhHHHHHHHHHHHcCCCcC-------------C--------Ccchhhhhhhhchhhhhhhhhhhcccceeeeecccc
Q psy13836 16 EDVKNNEDKIYSIAKRYGGIPA-------------G--------ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVP 74 (96)
Q Consensus 16 ~~v~~~~~~~~~i~~~~GG~~~-------------G--------~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~ 74 (96)
-.|-...+.+.+.+++.+|=.+ + ++-.+.|.+ |=-++-+|++|.+.|++.|
T Consensus 234 ~avy~~~~~A~e~AR~g~GPtLIE~~tYR~~~HS~sDd~~~YRskeE~~~~~~-~DPi~r~~~~L~~~g~~se------- 305 (358)
T COG1071 234 LAVYEAAKEAVERARAGEGPTLIEAVTYRYGGHSTSDDPSKYRSKEEVEEWKK-RDPIVRLRKYLIEAGILSE------- 305 (358)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEEEeecCCCCCCCCccccCCHHHHHHHhc-cChHHHHHHHHHHcCCCCH-------
Confidence 4477788888999988887321 1 122355655 2223469999999999887
Q ss_pred ccchHHHHHHHHHHHHHHH
Q psy13836 75 WDKTVLLCINVKKRLTREC 93 (96)
Q Consensus 75 Ws~~~~l~~~v~~al~~~~ 93 (96)
..+.++.+++++.|.+++
T Consensus 306 -e~~~~i~~e~~~~V~ea~ 323 (358)
T COG1071 306 -EELEAIEAEAKAEVDEAV 323 (358)
T ss_pred -HHHHHHHHHHHHHHHHHH
Confidence 566777777777776654
No 14
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=40.91 E-value=14 Score=21.16 Aligned_cols=27 Identities=11% Similarity=0.192 Sum_probs=17.6
Q ss_pred EEEEEEecChHHhHhHHHHHHHHHHHcCCCcCC
Q psy13836 6 LRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAG 38 (96)
Q Consensus 6 ll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G 38 (96)
+.+-||.+.+ +..+.+++..+||.+.+
T Consensus 3 i~~sg~~~~~------~~~l~~~i~~~Gg~~~~ 29 (63)
T PF12738_consen 3 ICFSGFSGKE------RSQLRKLIEALGGKYSK 29 (63)
T ss_dssp EEEEEB-TTT------CCHHHHHHHCTT-EEES
T ss_pred EEECCCCHHH------HHHHHHHHHHCCCEEec
Confidence 4566676655 66777899999996543
No 15
>PF05651 Diacid_rec: Putative sugar diacid recognition; InterPro: IPR008599 This region is found in several proteins characterised as carbohydrate diacid regulators (e.g. P36047 from SWISSPROT). An HTH DNA-binding motif is found at the C terminus of these proteins suggesting that this region includes the sugar recognition region.
Probab=37.03 E-value=73 Score=21.72 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=22.1
Q ss_pred CcccEEEEEEecChHHhHhHHHHHHHHH
Q psy13836 2 VKTPLRMLLFISDPEDVKNNEDKIYSIA 29 (96)
Q Consensus 2 ~~~cll~~gfeG~~~~v~~~~~~~~~i~ 29 (96)
+..++-++|.+|.+++|..--..+...+
T Consensus 80 ~g~~iGviGItG~p~eV~~~~~lvk~~~ 107 (135)
T PF05651_consen 80 NGEVIGVIGITGEPEEVRPYAQLVKKMA 107 (135)
T ss_pred CCEEEEEEEEecCHHHHHHHHHHHHHHH
Confidence 5667899999999999888766665544
No 16
>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria. Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.
Probab=36.44 E-value=18 Score=23.68 Aligned_cols=29 Identities=7% Similarity=-0.134 Sum_probs=24.9
Q ss_pred hhhhhchhhhhhhhhhhcccceeeeeccc
Q psy13836 45 GYMLTYIIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 45 W~~~rf~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+...+|--|-+++.|.++|+-+|.+.|..
T Consensus 61 G~~~~~~~~~~~~~l~~~gi~vE~m~T~~ 89 (109)
T cd05560 61 GERQRFPPPALLAPLLARGIGVEVMDTQA 89 (109)
T ss_pred CCCCCcCCHHHHHHHHHcCCeEEEECHHH
Confidence 55667878899999999999999999973
No 17
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=36.07 E-value=66 Score=20.59 Aligned_cols=63 Identities=8% Similarity=0.008 Sum_probs=42.2
Q ss_pred cEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeecc
Q psy13836 5 PLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 72 (96)
Q Consensus 5 cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA 72 (96)
|+.++-=+.++++++...+.+.++..++||...- .+.|=..++..|- .. ..+--|+.=+|+..
T Consensus 10 ~~~Il~p~l~e~~~~~~~~~~~~~i~~~gg~i~~---~~~wG~r~LAY~I-~k-~~~G~Yv~~~f~~~ 72 (97)
T CHL00123 10 TMYLLKPDLNEEELLKWIENYKKLLRKRGAKNIS---VQNRGKRKLSYKI-NK-YEDGIYIQMNYSGN 72 (97)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEE---EEeecCeeeeEEc-CC-CCEEEEEEEEEEEC
Confidence 5666666667889999999999999999997533 3356666666553 22 23333455566654
No 18
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=35.37 E-value=56 Score=24.67 Aligned_cols=72 Identities=6% Similarity=-0.049 Sum_probs=50.7
Q ss_pred EEEEec-ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHH
Q psy13836 8 MLLFIS-DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 86 (96)
Q Consensus 8 ~~gfeG-~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 86 (96)
+-||++ +....+.-..-+.++++ .|-..+.+ +||+.|-+-...+++|..+=|.=+|.| |...+.....
T Consensus 155 LsGYT~~~~~~~~pDf~lvk~l~~-~~~~vIAE--------Gr~~tP~~Ak~a~~~Ga~aVvVGsAIT--Rp~~It~~F~ 223 (229)
T COG3010 155 LSGYTGYTEKPTEPDFQLVKQLSD-AGCRVIAE--------GRYNTPEQAKKAIEIGADAVVVGSAIT--RPEEITQWFV 223 (229)
T ss_pred cccccCCCCCCCCCcHHHHHHHHh-CCCeEEee--------CCCCCHHHHHHHHHhCCeEEEECcccC--CHHHHHHHHH
Confidence 347777 45556666666666664 56555554 699999988889999999999999987 5555555555
Q ss_pred HHHH
Q psy13836 87 KRLT 90 (96)
Q Consensus 87 ~al~ 90 (96)
++++
T Consensus 224 ~~ik 227 (229)
T COG3010 224 DAIK 227 (229)
T ss_pred HHHh
Confidence 5544
No 19
>cd07045 BMC_CcmK_like Carbon dioxide concentrating mechanism K (CcmK)-like proteins, Bacterial Micro-Compartment (BMC) domain. Bacterial micro-compartments are primitive protein-based organelles that sequester specific metabolic pathways in bacterial cells. The prototypical bacterial microcompartment is the carboxysome shell, a bacterial polyhedral organelle which increase the efficiency of CO2 fixation by encapsulating RuBisCO and carbonic anhydrase. They can be divided into two types: alpha-type carboxysomes (alpha-cyanobacteria and proteobacteria) and beta-type carboxysomes (beta-cyanobacteria). Potential functional differences between the two types are not yet fully understood. In addition to these proteins there are several homologous shell proteins including those found in pdu organelles involved in coenzyme B12-dependent degradation of 1,2-propanediol and eut organelles involved in the cobalamin-dependent degradation of ethanolamine. Structure evidence shows that several carbox
Probab=33.92 E-value=97 Score=19.39 Aligned_cols=30 Identities=23% Similarity=0.232 Sum_probs=25.7
Q ss_pred EEEEEEecChHHhHhHHHHHHHHHHHcCCC
Q psy13836 6 LRMLLFISDPEDVKNNEDKIYSIAKRYGGI 35 (96)
Q Consensus 6 ll~~gfeG~~~~v~~~~~~~~~i~~~~GG~ 35 (96)
..++.+.|+-..|+...+...+.++++|..
T Consensus 38 k~~vii~GdvsaV~~Av~a~~~~~~~~~~~ 67 (84)
T cd07045 38 LVTVKITGDVAAVKAAVEAGAAAAERIGEL 67 (84)
T ss_pred EEEEEEEEcHHHHHHHHHHHHHHHhccCcE
Confidence 467888999999999999999999887653
No 20
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.27 E-value=67 Score=23.70 Aligned_cols=76 Identities=20% Similarity=0.312 Sum_probs=49.0
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCCCcc-------hhhhhhhhchhh--hhhhhhhhcccceeeeeccccccchHHHHHHHH
Q psy13836 16 EDVKNNEDKIYSIAKRYGGIPAGESN-------GRRGYMLTYIIA--YIRDFACDYYFIGDSFETSVPWDKTVLLCINVK 86 (96)
Q Consensus 16 ~~v~~~~~~~~~i~~~~GG~~~G~~~-------g~~W~~~rf~~p--YlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~ 86 (96)
+.++...+.+.+++.++||...-+.. +.....-.+++| .+.+++.+.+=+.....-.+.=.++..-|..+.
T Consensus 59 ~d~~~a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g~v~~~~~~~~DvT~~y~D~~ 138 (262)
T PF14257_consen 59 KDVEKAVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELGKVTSRNISSEDVTEQYVDLE 138 (262)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccCceeeeeccccchHHHHHHHH
Confidence 45888899999999999997543332 233444466676 466665555544455555555567777777776
Q ss_pred HHHHH
Q psy13836 87 KRLTR 91 (96)
Q Consensus 87 ~al~~ 91 (96)
.++..
T Consensus 139 arl~~ 143 (262)
T PF14257_consen 139 ARLKN 143 (262)
T ss_pred HHHHH
Confidence 66543
No 21
>TIGR00109 hemH ferrochelatase. Human ferrochelatase, found at the mitochondrial inner membrane inner surface, was shown in an active recombinant form to be a homodimer. This contrasts to an earlier finding by gel filtration that overexpressed E. coli ferrochelatase runs as a monomer.
Probab=31.85 E-value=51 Score=25.44 Aligned_cols=63 Identities=17% Similarity=0.088 Sum_probs=33.5
Q ss_pred cEEEEEE---------ecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhch-----hhhhhhhh---hh------
Q psy13836 5 PLRMLLF---------ISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYI-----IAYIRDFA---CD------ 61 (96)
Q Consensus 5 cll~~gf---------eG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~-----~pYlRd~l---~~------ 61 (96)
+.+++.+ .|+.- .+.-.+.+..|+++.|.. ...--.| ++||. .|++.|.| .+
T Consensus 189 ~~llfSaHglP~~~~~~Gd~Y-~~~~~~ta~~l~~~l~~~---~~~~~~f-QS~~g~~~Wl~P~~~~~l~~l~~~G~k~V 263 (322)
T TIGR00109 189 AVLLFSAHGLPQSYVDEGDPY-PAECEATTRLIAEKLGFP---NEYRLTW-QSRVGPEPWLGPYTEELLEKLGEQGVQHI 263 (322)
T ss_pred cEEEEeCCCCchhHhhCCCCh-HHHHHHHHHHHHHHcCCC---CCeEEEE-eCCCCCCCcCCCCHHHHHHHHHHcCCceE
Confidence 4566665 34432 245566677777777721 0111122 22544 46666653 22
Q ss_pred ----cccceeeeecc
Q psy13836 62 ----YYFIGDSFETS 72 (96)
Q Consensus 62 ----~G~~~DTlETA 72 (96)
.|+++|-+||-
T Consensus 264 ~vvP~gFv~D~lETl 278 (322)
T TIGR00109 264 VVVPIGFTADHLETL 278 (322)
T ss_pred EEECCcccccchhHH
Confidence 46788888885
No 22
>PF01218 Coprogen_oxidas: Coproporphyrinogen III oxidase; InterPro: IPR001260 Coprogen oxidase (i.e. coproporphyrin III oxidase or coproporphyrinogenase) catalyses the oxidative decarboxylation of coproporphyrinogen III to proto-porhyrinogen IX in the haem and chlorophyll biosynthetic pathways [, ]. The protein is a homodimer containing two internally bound iron atoms per molecule of native protein []. The enzyme is active in the presence of molecular oxygen that acts as an electron acceptor. The enzyme is widely distributed having been found in a variety of eukaryotic and prokaryotic sources.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 3EJO_B 3DWR_B 1VJU_B 2QT8_B 3DWS_A 2AEX_A 1TKL_B 1TK1_A 1TLB_Q 1TXN_A ....
Probab=31.42 E-value=74 Score=24.93 Aligned_cols=77 Identities=10% Similarity=-0.030 Sum_probs=55.3
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 93 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~ 93 (96)
.++++..-.+..+++|.+|+... =.-.++|-+.-|-+|-..+.-===|++.|-|.+ -+|++.-++.++|-+++..++
T Consensus 133 ~~eD~~~FH~~~K~~cd~~~~~~--Yp~fK~wcD~YFyipHR~E~RGiGGIFfD~l~~-~~~e~~f~f~~~vg~~fl~aY 209 (296)
T PF01218_consen 133 FEEDAKHFHQTLKEACDPHDPSY--YPRFKKWCDEYFYIPHRNEHRGIGGIFFDDLNT-GDFEKDFAFVKDVGEAFLPAY 209 (296)
T ss_dssp -HHHHHHHHHHHHHHHGGG-TTH--HHHHHHHHHHHSEEGGGTEESSSEEEEEEEE-S-S-HHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcChHH--HHHHHhhchhhcchhhcCCCcCCceeeeccccc-cchhhHHHHHHHHHHHHHHHH
Confidence 45678888999999999998543 134889999999899855544445788999987 567777777777777766554
No 23
>COG1647 Esterase/lipase [General function prediction only]
Probab=29.72 E-value=55 Score=24.97 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=19.2
Q ss_pred cccEEEEEEecChHHhHhHHHHHHH
Q psy13836 3 KTPLRMLLFISDPEDVKNNEDKIYS 27 (96)
Q Consensus 3 ~~cll~~gfeG~~~~v~~~~~~~~~ 27 (96)
+-||++=||+|+.++|+..-+...+
T Consensus 16 ~AVLllHGFTGt~~Dvr~Lgr~L~e 40 (243)
T COG1647 16 RAVLLLHGFTGTPRDVRMLGRYLNE 40 (243)
T ss_pred EEEEEEeccCCCcHHHHHHHHHHHH
Confidence 3489999999999998876554433
No 24
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=29.55 E-value=2.2e+02 Score=22.51 Aligned_cols=45 Identities=7% Similarity=-0.062 Sum_probs=30.0
Q ss_pred hhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHHH
Q psy13836 42 GRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECT 94 (96)
Q Consensus 42 g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~ 94 (96)
.+.|...+=-++.+++.|.+.|++.+ +.+.++-+++++.|.++++
T Consensus 279 ~~~~~~~~DPi~~~~~~L~~~g~~te--------~e~~~i~~e~~~~v~~a~~ 323 (362)
T PLN02269 279 ISGVRQERDPIERVRKLLLAHELATE--------AELKDIEKEIRKEVDDAVA 323 (362)
T ss_pred HHHHHhCCCHHHHHHHHHHHcCCCCH--------HHHHHHHHHHHHHHHHHHH
Confidence 44565545444568899999999876 5566666666666666553
No 25
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=28.26 E-value=1.8e+02 Score=22.56 Aligned_cols=83 Identities=8% Similarity=-0.048 Sum_probs=53.0
Q ss_pred cEEEEEEecCh-HHhHhHHHHHHHHHHHcC---CCcCCC---cchhhhhhhhchhhhhhhhhhhcccceeeeeccccccc
Q psy13836 5 PLRMLLFISDP-EDVKNNEDKIYSIAKRYG---GIPAGE---SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK 77 (96)
Q Consensus 5 cll~~gfeG~~-~~v~~~~~~~~~i~~~~G---G~~~G~---~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~ 77 (96)
+.+++-++|.. ..+........+++..++ ...... ...+.|...+-..+-... .+-.....++.+|.++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~----~~~~~~~~d~~vp~~~ 344 (459)
T COG0277 269 ARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARLWLARKGALAAAGA----LGPGVIQEDVVVPLEA 344 (459)
T ss_pred eEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHHHHHHHHHHHh----hCCCccccceeeeHHH
Confidence 44667777777 778899999999999998 111121 123344443332222221 1111566789999999
Q ss_pred hHHHHHHHHHHHHH
Q psy13836 78 TVLLCINVKKRLTR 91 (96)
Q Consensus 78 ~~~l~~~v~~al~~ 91 (96)
++.....+.+.+.+
T Consensus 345 ~~~~~~~~~~~~~~ 358 (459)
T COG0277 345 LPEFLREILALLDK 358 (459)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998887765
No 26
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=27.55 E-value=1.1e+02 Score=20.81 Aligned_cols=38 Identities=3% Similarity=-0.162 Sum_probs=26.7
Q ss_pred hhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHH
Q psy13836 51 IIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 90 (96)
Q Consensus 51 ~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~ 90 (96)
+.|+|...|.++|+ +..+..+--|+...+.+.+++++.
T Consensus 21 n~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~ 58 (152)
T cd00886 21 SGPALVELLEEAGH--EVVAYEIVPDDKDEIREALIEWAD 58 (152)
T ss_pred hHHHHHHHHHHcCC--eeeeEEEcCCCHHHHHHHHHHHHh
Confidence 35778888888874 666666667787777777766554
No 27
>PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S6 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S6 is known to bind together with S18 to 16S ribosomal RNA. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities, groups bacterial, red algal chloroplast and cyanelle S6 ribosomal proteins.; GO: 0003735 structural constituent of ribosome, 0019843 rRNA binding, 0006412 translation, 0005840 ribosome; PDB: 3BBN_F 3R3T_B 3F1E_F 2QNH_g 2OW8_g 3PYQ_F 3PYS_F 3PYU_F 3MR8_F 3PYN_F ....
Probab=27.42 E-value=74 Score=19.63 Aligned_cols=62 Identities=13% Similarity=0.114 Sum_probs=39.4
Q ss_pred EEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeecc
Q psy13836 6 LRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 72 (96)
Q Consensus 6 ll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA 72 (96)
++++-=+.++++++...+.+.++..++||....- +.|=..++..|- .. -.+--++.=+|++.
T Consensus 6 ~~il~~~~~~~~~~~~~~~~~~~i~~~gg~v~~~---~~~G~r~LaY~i-~k-~~~G~Y~~~~f~~~ 67 (92)
T PF01250_consen 6 MFILRPDLSEEEIKKLIERVKKIIEKNGGVVRSV---ENWGKRRLAYPI-KK-QKEGHYFLFNFDAS 67 (92)
T ss_dssp EEEE-TTSCHHHHHHHHHHHHHHHHHTTEEEEEE---EEEEEEEESSEE-TT-ECEEEEEEEEEEES
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE---EEEeecccccCC-CC-CCEEEEEEEEEEeC
Confidence 3444434567889999999999999999987544 245444554442 22 24444555566665
No 28
>PF01766 Birna_VP2: Birnavirus VP2 protein; InterPro: IPR002662 Infectious pancreatic necrosis virus (IPNV), a birnavirus, is an important pathogen in fish farms. Analyses of viral proteins showed that VP2 is the major structural and immunogenic polypeptide of the virus [, ]. All neutralizing monoclonal antibodies are specific to VP2 and bind to continuous or discontinuous epitopes. The variable domain of VP2 and the 20 adjacent amino acids of the conserved C-terminal are probably the most important in inducing an immune response for the protection of animals []. The large RNA segment of the Birnaviridae codes for a polyprotein (N-VP2-VP4-VP3-C), most of which is then processed to generate the constituent polypeptides. VP4 protein is involved in generating VP2 and VP3 []. Recombinant VP3 is more immunogenic than recombinant VP2 [].; GO: 0005198 structural molecule activity; PDB: 2DF7_T 3IDE_D 3FBM_A 2GSY_J 2IMU_A 1WCD_J.
Probab=27.06 E-value=5.7 Score=32.58 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=28.1
Q ss_pred EEEEecChHHhHhH-----HHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhh
Q psy13836 8 MLLFISDPEDVKNN-----EDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIR 56 (96)
Q Consensus 8 ~~gfeG~~~~v~~~-----~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlR 56 (96)
-+.|+|+..+|... +.....+.-+-|.+.+|++.+=-=.-.+|+.||.|
T Consensus 120 avt~~G~lSEv~~~~Y~~llS~tsn~~DKvgnvlV~dGv~VLSLPt~fD~pYVR 173 (441)
T PF01766_consen 120 AVTFQGSLSEVEDLSYNSLLSATSNPLDKVGNVLVGDGVAVLSLPTGFDNPYVR 173 (441)
T ss_dssp EEEESS-GGG-S--STTGGGGS-S-GGGEEEEEETTT-EEEE---S-SS---EE
T ss_pred eEEeccCHHHcccccccceeeeccChhhhhcCEEecCceEEEecCcccCCCcee
Confidence 36789988776533 55666778888999999988777777899999988
No 29
>PF06230 DUF1009: Protein of unknown function (DUF1009); InterPro: IPR010415 This is a family of uncharacterised bacterial proteins.
Probab=26.64 E-value=24 Score=26.22 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=28.7
Q ss_pred cccEEEEEEecChHHhHhHHHHHHHHHH-HcCCCcCCCcchhhhhhhhchhhh
Q psy13836 3 KTPLRMLLFISDPEDVKNNEDKIYSIAK-RYGGIPAGESNGRRGYMLTYIIAY 54 (96)
Q Consensus 3 ~~cll~~gfeG~~~~v~~~~~~~~~i~~-~~GG~~~G~~~g~~W~~~rf~~pY 54 (96)
+.|+.+=+.||+++.. +++.++.+ .-||+.+ ...+.-++.||+.|-
T Consensus 123 g~VlAVEa~EGTD~~i----~R~~~l~~~~~~~Vlv--K~~Kp~QD~R~DlPt 169 (214)
T PF06230_consen 123 GRVLAVEAIEGTDAMI----RRAGELRGKGKGGVLV--KVPKPGQDLRFDLPT 169 (214)
T ss_pred CEEEEEeccccHHHHH----HHHHHhcCCCCCEEEE--EccCCCCcccccccc
Confidence 3467777778877664 44444443 3344432 345567899999996
No 30
>PRK12378 hypothetical protein; Provisional
Probab=25.89 E-value=1.6e+02 Score=22.10 Aligned_cols=70 Identities=10% Similarity=0.022 Sum_probs=41.5
Q ss_pred HHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhh---chh-----hhhhhhhhhcccce-------eeeeccccccchHH
Q psy13836 16 EDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLT---YII-----AYIRDFACDYYFIG-------DSFETSVPWDKTVL 80 (96)
Q Consensus 16 ~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~r---f~~-----pYlRd~l~~~G~~~-------DTlETA~~Ws~~~~ 80 (96)
+-...-...++.++++|||.. |+...-+|.--| +.+ --+-+.+++.|.-+ |++|--|+.+.+..
T Consensus 101 DN~nRt~~~vr~~f~K~gg~l-~~~gsv~~~Fe~kG~i~i~~~~~d~~~e~aieaGa~~edv~~~~~~~~i~t~p~~~~~ 179 (235)
T PRK12378 101 DNVNRTVANVRSAFNKNGGNL-GTSGSVAFMFDHKGVFVFEGDDEDELLEALIDADVDVEDVEEEEGTITVYTDPTDFHK 179 (235)
T ss_pred CCHHHHHHHHHHHHhhcCCeE-CCCCceeeeeecceEEEeCCCCHHHHHHHHHhCCCCcccccccCCeEEEEECHHHHHH
Confidence 345566778889999999964 443333454333 222 23556677777622 24666677666666
Q ss_pred HHHHHH
Q psy13836 81 LCINVK 86 (96)
Q Consensus 81 l~~~v~ 86 (96)
+.+.+.
T Consensus 180 v~~~L~ 185 (235)
T PRK12378 180 VKKALE 185 (235)
T ss_pred HHHHHH
Confidence 665554
No 31
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=25.42 E-value=1.3e+02 Score=20.16 Aligned_cols=39 Identities=5% Similarity=-0.160 Sum_probs=29.2
Q ss_pred chhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHH
Q psy13836 50 YIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLT 90 (96)
Q Consensus 50 f~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~ 90 (96)
-+.|+|+..|.+.| ++..+..+--|+...+.+.+.+++.
T Consensus 27 ~n~~~l~~~l~~~G--~~v~~~~~v~Dd~~~i~~~l~~~~~ 65 (144)
T TIGR00177 27 SNGPLLAALLEEAG--FNVSRLGIVPDDPEEIREILRKAVD 65 (144)
T ss_pred CcHHHHHHHHHHCC--CeEEEEeecCCCHHHHHHHHHHHHh
Confidence 34588999999988 4566666777888888888777654
No 32
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=25.00 E-value=2.4e+02 Score=21.59 Aligned_cols=74 Identities=7% Similarity=-0.063 Sum_probs=42.6
Q ss_pred ecCh-HHhHhHHHHHHHHHHHcCCCcC--------------------CCcchhhhhhhhchhhhhhhhhhhcccceeeee
Q psy13836 12 ISDP-EDVKNNEDKIYSIAKRYGGIPA--------------------GESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 70 (96)
Q Consensus 12 eG~~-~~v~~~~~~~~~i~~~~GG~~~--------------------G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlE 70 (96)
.|.+ ..|....+.+.+.+++.+|-.+ .+..-+.|.+ |=-.+.+++.|.+.|++.+.
T Consensus 202 dg~d~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~gHs~~D~~~Yr~~~e~~~~~~-~dPi~~~~~~L~~~g~~~~~-- 278 (315)
T TIGR03182 202 DGMDVLAVREAAKEAVERARSGKGPILLEMKTYRFRGHSMSDPAKYRSKEEVEEWRK-RDPIEKLKARLIEQGIASEE-- 278 (315)
T ss_pred CCCCHHHHHHHHHHHHHHHHccCCCEEEEEeCCcCCCCCCCCccccCCHHHHHHHHh-cCHHHHHHHHHHHCCCCCHH--
Confidence 4533 3455666666666766655211 1223455653 22234688899999998763
Q ss_pred ccccccchHHHHHHHHHHHHHHHH
Q psy13836 71 TSVPWDKTVLLCINVKKRLTRECT 94 (96)
Q Consensus 71 TA~~Ws~~~~l~~~v~~al~~~~~ 94 (96)
.+.++.+++++.+.++++
T Consensus 279 ------~~~~~~~~~~~~v~~a~~ 296 (315)
T TIGR03182 279 ------ELKEIDKEVRAEVEEAVE 296 (315)
T ss_pred ------HHHHHHHHHHHHHHHHHH
Confidence 455566666666655543
No 33
>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks. This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.
Probab=24.98 E-value=64 Score=19.46 Aligned_cols=21 Identities=14% Similarity=-0.197 Sum_probs=16.1
Q ss_pred hhhhchhhhhhhhhhhccccee
Q psy13836 46 YMLTYIIAYIRDFACDYYFIGD 67 (96)
Q Consensus 46 ~~~rf~~pYlRd~l~~~G~~~D 67 (96)
.+.|. .+|..+.|.++|+++-
T Consensus 30 ~D~r~-i~~~~k~L~~~gLI~k 50 (75)
T PF04182_consen 30 IDPRS-IFYRLKKLEKKGLIVK 50 (75)
T ss_pred CCchH-HHHHHHHHHHCCCEEE
Confidence 34444 7899999999999864
No 34
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=24.67 E-value=1.1e+02 Score=20.24 Aligned_cols=38 Identities=8% Similarity=0.105 Sum_probs=28.0
Q ss_pred hhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHH
Q psy13836 52 IAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTR 91 (96)
Q Consensus 52 ~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~ 91 (96)
.|+|...|.++|+ +.....+--|+...+.+++.+++.+
T Consensus 19 ~~~l~~~l~~~G~--~v~~~~~v~Dd~~~i~~~l~~~~~~ 56 (144)
T PF00994_consen 19 GPFLAALLEELGI--EVIRYGIVPDDPDAIKEALRRALDR 56 (144)
T ss_dssp HHHHHHHHHHTTE--EEEEEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCC--eeeEEEEECCCHHHHHHHHHhhhcc
Confidence 4788888888887 5555555568988888888666543
No 35
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=24.45 E-value=3.2e+02 Score=20.81 Aligned_cols=79 Identities=9% Similarity=0.028 Sum_probs=46.7
Q ss_pred EEEEecCh-HHhHhHHHHHHHHHHHcCCCcC------------CCc---------chhhhhhhhchhhhhhhhhhhcccc
Q psy13836 8 MLLFISDP-EDVKNNEDKIYSIAKRYGGIPA------------GES---------NGRRGYMLTYIIAYIRDFACDYYFI 65 (96)
Q Consensus 8 ~~gfeG~~-~~v~~~~~~~~~i~~~~GG~~~------------G~~---------~g~~W~~~rf~~pYlRd~l~~~G~~ 65 (96)
.+-..|.+ ..|-...+.+.+.+++.+|-.+ ... --+.|.+.+=-.+.+++.|.+.|++
T Consensus 189 ~~~VDG~D~~av~~a~~~A~~~~R~g~gP~lie~~tyR~~gHs~~Dd~~~yr~~~e~~~~~~~~DPi~~~~~~L~~~g~~ 268 (300)
T PF00676_consen 189 GIRVDGNDVEAVYEAAKEAVEYARAGKGPVLIEAVTYRLRGHSESDDPTFYRSPEEYEEWWKKRDPIKRFRRYLIEEGVL 268 (300)
T ss_dssp EEEEETTSHHHHHHHHHHHHHHHHTTT--EEEEEEE--SS-SSTTSCGGGTSHHHHHHHHHHCT-HHHHHHHHHHHTTSS
T ss_pred EEEECCEeHHHHHHHHHHHHHHHhcCCCCEEEEEeeccCCCCCCCCCccccCCHHHHHHHHhcCcHHHHHHHHHHHcCCC
Confidence 34456654 5577778888888888777211 111 1234444443334689999999998
Q ss_pred eeeeeccccccchHHHHHHHHHHHHHHHH
Q psy13836 66 GDSFETSVPWDKTVLLCINVKKRLTRECT 94 (96)
Q Consensus 66 ~DTlETA~~Ws~~~~l~~~v~~al~~~~~ 94 (96)
.+ +.+.++.+++++.|.++++
T Consensus 269 t~--------~~~~~i~~e~~~~v~~a~~ 289 (300)
T PF00676_consen 269 TE--------EELDAIEAEIKAEVEEAVE 289 (300)
T ss_dssp -H--------HHHHHHHHHHHHHHHHHHH
T ss_pred CH--------HHHHHHHHHHHHHHHHHHH
Confidence 76 4556666666666665553
No 36
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=24.21 E-value=60 Score=22.16 Aligned_cols=21 Identities=19% Similarity=0.210 Sum_probs=17.6
Q ss_pred ccccccchHHHHHHHHHHHHH
Q psy13836 71 TSVPWDKTVLLCINVKKRLTR 91 (96)
Q Consensus 71 TA~~Ws~~~~l~~~v~~al~~ 91 (96)
-++||.+++++++.+++...+
T Consensus 228 P~vp~~~l~~~~~~~~~~~~~ 248 (257)
T PF00487_consen 228 PGVPWYNLPEAHPILKEVCPE 248 (257)
T ss_pred CCcCHHHHHHHHHHHHHHHHH
Confidence 478999999999999877654
No 37
>PRK00453 rpsF 30S ribosomal protein S6; Reviewed
Probab=23.84 E-value=1.2e+02 Score=19.35 Aligned_cols=62 Identities=15% Similarity=0.020 Sum_probs=37.7
Q ss_pred cEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeec
Q psy13836 5 PLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 71 (96)
Q Consensus 5 cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlET 71 (96)
|++++-=+-++++++...+.+.+++.+.||....- +.|=..++..| +.. ..+--++.=+|++
T Consensus 6 ~~~il~~~~~~~~~~~~~~~~~~~i~~~gg~i~~~---~~~G~r~LAY~-I~k-~~~G~Y~~~~f~~ 67 (108)
T PRK00453 6 IVFILRPDLSEEQVKALVERFKGVITENGGTIHKV---EDWGRRRLAYP-INK-LRKGHYVLLNFEA 67 (108)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCEEEEE---ecccccccceE-cCC-CcEEEEEEEEEEe
Confidence 45555444468889999999999999999986543 23444444333 222 2333345555555
No 38
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=23.73 E-value=8.7 Score=25.18 Aligned_cols=68 Identities=15% Similarity=0.033 Sum_probs=39.4
Q ss_pred cccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcC--------------CCcchhhhhhhhchhhh-hhhhhhhcccce-
Q psy13836 3 KTPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPA--------------GESNGRRGYMLTYIIAY-IRDFACDYYFIG- 66 (96)
Q Consensus 3 ~~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~--------------G~~~g~~W~~~rf~~pY-lRd~l~~~G~~~- 66 (96)
+..+.++||--+ . ...+.+..+++|-+.- ....+..|.+-+|+-|+ -.+.|...|.+.
T Consensus 6 ~~wVtVFGfp~~--~----~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS--A----SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG--G----HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEET
T ss_pred CeEEEEEccCHH--H----HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEc
Confidence 346788888532 2 3444555666666421 12358899999999996 556788888776
Q ss_pred eeeecccccc
Q psy13836 67 DSFETSVPWD 76 (96)
Q Consensus 67 DTlETA~~Ws 76 (96)
+++=-.|+|.
T Consensus 80 g~~mvGV~~~ 89 (100)
T PF05172_consen 80 GSLMVGVKPC 89 (100)
T ss_dssp TCEEEEEEE-
T ss_pred CcEEEEEEEc
Confidence 3444555554
No 39
>PF01401 Peptidase_M2: Angiotensin-converting enzyme This Prosite motif covers only the active site.; InterPro: IPR001548 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to the MEROPS peptidase family M2 (clan MA(E)). The protein fold of the peptidase domain for members of this family resembles that of thermolysin, the type example for clan MA. The catalytic residues and zinc ligands have been identified, the zinc ion being ligated to two His residues within the motif HEXXH, showing that the enzyme belongs to the E sub-group of metalloproteases []. Pepetidyl-dipeptidase A (angiotensin-converting enzyme) is a mammalian enzyme responsible for cleavage of dipeptides from the C-termini of proteins, notably converting angiotensin I to angiotensin II []. The enzyme exists in two differentially transcribed forms, the most common of which is from lung endothelium; this contains two homologous domains that have arisen by gene duplication []. The testis-specific form contains only the C-terminal domain, arising from a duplicated promoter region present in intron 12 of the gene []. Both enzymatic forms are membrane proteins that are anchored by means of a C-terminal transmembrane domain. Both domains of the endothelial enzyme are active, but have differing kinetic constants []. ]. A number of insect enzymes have been shown to be similar to peptidyl-dipeptidase A, these containing a single catalytic domain.; GO: 0008237 metallopeptidase activity, 0008241 peptidyl-dipeptidase activity, 0006508 proteolysis, 0016020 membrane; PDB: 2YDM_A 3BKL_A 2C6N_B 1UZE_A 3BKK_A 2C6F_B 2IUX_A 2IUL_A 2XYD_B 3NXQ_B ....
Probab=23.64 E-value=1e+02 Score=26.24 Aligned_cols=44 Identities=14% Similarity=0.180 Sum_probs=32.3
Q ss_pred CcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHHHh
Q psy13836 39 ESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTE 95 (96)
Q Consensus 39 ~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~~~ 95 (96)
...|+-|+. .|..|-+.+.+-+ -|..|.+||+.+..-++..|.+
T Consensus 186 ~d~g~~Wr~-~ye~~~~~~~~~~------------lw~~i~PLY~~LHayVR~~L~~ 229 (595)
T PF01401_consen 186 KDTGEYWRS-SYEMPNFEQELER------------LWQQIKPLYKQLHAYVRRKLRE 229 (595)
T ss_dssp SSHHHHHHG-GG-CTTHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHH-HhccccHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 456778875 4877765543333 5999999999999999888864
No 40
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=23.48 E-value=1e+02 Score=20.55 Aligned_cols=48 Identities=4% Similarity=-0.004 Sum_probs=38.0
Q ss_pred hhhhhhhhchhhhhhhhhhhcccceeeeec----cccccchHHHHHHHHHHHHH
Q psy13836 42 GRRGYMLTYIIAYIRDFACDYYFIGDSFET----SVPWDKTVLLCINVKKRLTR 91 (96)
Q Consensus 42 g~~W~~~rf~~pYlRd~l~~~G~~~DTlET----A~~Ws~~~~l~~~v~~al~~ 91 (96)
|..|.+.|+ ..+++.|.+.|+=-|-+++ +..+.++.+..+.+.+.|++
T Consensus 71 Gn~~a~~Rv--~~~k~~L~~~Gi~~eRv~~~~~~~~~~~~fa~~~~~f~~~i~~ 122 (124)
T PF02662_consen 71 GNYRAEKRV--ERLKKLLEELGIEPERVRLYWISAPEGKRFAEIVNEFTERIKE 122 (124)
T ss_pred hhHHHHHHH--HHHHHHHHHcCCChhHeEEEEeCcccHHHHHHHHHHHHHHHHH
Confidence 445655554 5688999999999999998 88888888888888777764
No 41
>PLN02873 coproporphyrinogen-III oxidase
Probab=23.24 E-value=1.7e+02 Score=22.75 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=56.6
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 93 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~ 93 (96)
.++++..-.+.++++|.+||-..= .-.|+|-+.-|-+|-..+.-==-|++.|.+.+ -+|.+.-++.++|-+++..+.
T Consensus 111 ~~eD~~~FH~~~K~aCd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfDdln~-~~~e~~f~f~~~vg~afl~aY 187 (274)
T PLN02873 111 FEEDVKHFHGTYKDVCDKHDPEFY--PRFKKWCDDYFYIKHRGERRGLGGIFFDDLND-RDQEDLLAFATDVANSVVPAY 187 (274)
T ss_pred ChHHHHHHHHHHHHHHhccCchhh--HHHHHHHHHhcchhhcCCCCCCceeecCCCCC-CCHHHHHHHHHHHHHHHHHHh
Confidence 456778888999999999986542 34889999999888755544445778888876 457777777777777766554
No 42
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=22.78 E-value=1.9e+02 Score=17.66 Aligned_cols=27 Identities=22% Similarity=0.304 Sum_probs=19.4
Q ss_pred EEEEEEecChHHhHhHHHHHHHHHHHcC
Q psy13836 6 LRMLLFISDPEDVKNNEDKIYSIAKRYG 33 (96)
Q Consensus 6 ll~~gfeG~~~~v~~~~~~~~~i~~~~G 33 (96)
+.+.|.. +.++++...+.+.++++++|
T Consensus 60 i~itGak-s~~~~~~a~~~i~~~L~~~~ 86 (86)
T PF00352_consen 60 IVITGAK-SEEEAKKAIEKILPILQKLG 86 (86)
T ss_dssp EEEEEES-SHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecC-CHHHHHHHHHHHHHHHHHcC
Confidence 3444444 46778888889999998876
No 43
>COG3737 Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=39 Score=23.31 Aligned_cols=51 Identities=10% Similarity=0.038 Sum_probs=36.7
Q ss_pred HHHHHHHHHHcCC---CcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccc
Q psy13836 22 EDKIYSIAKRYGG---IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK 77 (96)
Q Consensus 22 ~~~~~~i~~~~GG---~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~ 77 (96)
-....++++...- +.+|+ +...||--|-+|..+...|+-+|.+-|.+.=..
T Consensus 57 ~e~f~~vl~~a~~~EilliGT-----G~~~rf~p~~l~aal~~~gIsve~Mst~AA~RT 110 (127)
T COG3737 57 PEDFERVLAEAPDVEILLIGT-----GARLRFPPPKLRAALKAAGISVEPMSTGAAVRT 110 (127)
T ss_pred HHHHHHHHhcCCCceEEEEec-----CccccCCCHHHHHHHHHcCCccccccchhhHHH
Confidence 3444455555453 23565 567899888999999999999999999865333
No 44
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=22.64 E-value=1.4e+02 Score=21.42 Aligned_cols=39 Identities=3% Similarity=-0.172 Sum_probs=27.7
Q ss_pred hHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhccc
Q psy13836 20 NNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYF 64 (96)
Q Consensus 20 ~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~ 64 (96)
...+...++.+++.-+.+ .|=-..|+.|||..-...+|+
T Consensus 80 elL~~F~~~i~~~~p~lv------~yNg~~FDlP~L~~Ra~~~gi 118 (208)
T cd05782 80 ELLEDFFQLIEKKNPRLV------SFNGRGFDLPVLHLRALIHGV 118 (208)
T ss_pred HHHHHHHHHHHHhCCEEE------ecCCCcCCHHHHHHHHHHhCC
Confidence 445666677777633322 366668999999999999988
No 45
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=22.16 E-value=1.2e+02 Score=22.62 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHcCCCcCCCcchhhhhhh-hchhhhhhhh---hhhcc----cceeeeeccccccchHHHHHHHHHHH
Q psy13836 21 NEDKIYSIAKRYGGIPAGESNGRRGYML-TYIIAYIRDF---ACDYY----FIGDSFETSVPWDKTVLLCINVKKRL 89 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~~G~~~g~~W~~~-rf~~pYlRd~---l~~~G----~~~DTlETA~~Ws~~~~l~~~v~~al 89 (96)
....+.+.++++|...... .....+. |-...|+.+. +.++| .++||+-++.|+ ++..+.+.+++.+
T Consensus 120 ~~~~~i~~ak~~G~~v~~~--~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~-~v~~lv~~l~~~~ 193 (273)
T cd07941 120 MIRDSVAYLKSHGREVIFD--AEHFFDGYKANPEYALATLKAAAEAGADWLVLCDTNGGTLPH-EIAEIVKEVRERL 193 (273)
T ss_pred HHHHHHHHHHHcCCeEEEe--EEeccccCCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHH-HHHHHHHHHHHhC
Confidence 3456667888888643221 1111121 3233344333 34555 467999999995 5788888877654
No 46
>PF13368 Toprim_C_rpt: Topoisomerase C-terminal repeat
Probab=21.98 E-value=19 Score=21.17 Aligned_cols=16 Identities=6% Similarity=-0.047 Sum_probs=11.4
Q ss_pred hhhhchhhhhhhhhhhc
Q psy13836 46 YMLTYIIAYIRDFACDY 62 (96)
Q Consensus 46 ~~~rf~~pYlRd~l~~~ 62 (96)
..+|| +||+.+.....
T Consensus 10 ~~GRf-GPYv~~g~~~~ 25 (61)
T PF13368_consen 10 KNGRF-GPYVKHGKKNA 25 (61)
T ss_pred eECCC-CceEEECCccc
Confidence 56799 99987654443
No 47
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=21.91 E-value=1e+02 Score=20.26 Aligned_cols=61 Identities=18% Similarity=0.180 Sum_probs=36.6
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcC---CC--cchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHH
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPA---GE--SNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINV 85 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~---G~--~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v 85 (96)
+.+..+.-...+..+.++|||.++ |+ .+--.|.-.|- .+.++ +|+|.|-.|=|=|+-..++
T Consensus 14 D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~~lEG~w~ptr~-------vviEF----ps~~~ar~~y~SpeYq~a~ 79 (96)
T COG5470 14 DPEQYKDYVSKAKPAIEKFGGRYLVRGGEVETLEGEWRPTRN-------VVIEF----PSLEAARDCYNSPEYQAAA 79 (96)
T ss_pred CHHHHHHHHHHhHHHHHHhCCeeEeeCCCeeeccCCCCcccE-------EEEEc----CCHHHHHHHhcCHHHHHHH
Confidence 456677778899999999999765 22 11112664442 22222 5666666666665554443
No 48
>PF13250 DUF4041: Domain of unknown function (DUF4041)
Probab=21.56 E-value=1e+02 Score=18.00 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=17.7
Q ss_pred eeeeccccccchHHHHHHHHHHHH
Q psy13836 67 DSFETSVPWDKTVLLCINVKKRLT 90 (96)
Q Consensus 67 DTlETA~~Ws~~~~l~~~v~~al~ 90 (96)
|.+=.-|+|+|++.+-+.++.+..
T Consensus 12 D~~i~kv~~~Ni~~~~~rI~ksf~ 35 (56)
T PF13250_consen 12 DAAISKVKYNNIDTMEKRIEKSFE 35 (56)
T ss_pred HHHHHhCChhhHHHHHHHHHHHHH
Confidence 444456899999999888876653
No 49
>KOG0496|consensus
Probab=21.38 E-value=1e+02 Score=26.67 Aligned_cols=61 Identities=20% Similarity=0.179 Sum_probs=41.1
Q ss_pred hHhHHHHHHH----HHHHcCCCc-CCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccch
Q psy13836 18 VKNNEDKIYS----IAKRYGGIP-AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKT 78 (96)
Q Consensus 18 v~~~~~~~~~----i~~~~GG~~-~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~ 78 (96)
++...+.+.. +..+.||=. +.+---|-..-.|+-.++-+..+-..+.++.++.|.+||=..
T Consensus 144 ~~~~~~~iv~~mk~L~~~qGGPIIl~QIENEYG~~~~~~~~~~k~y~~w~a~m~~~l~~gvpw~mC 209 (649)
T KOG0496|consen 144 MERWTTKIVPMMKKLFASQGGPIILVQIENEYGNYLRALGAEGKSYLKWAAVLATSLGTGVPWVMC 209 (649)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCEEEEEeechhhHHHHHHHHHHHHhhccceEEEEecCCCCceeEe
Confidence 5555555544 777888833 222112222555666788888999999999999999999543
No 50
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=21.22 E-value=1.7e+02 Score=22.52 Aligned_cols=50 Identities=6% Similarity=-0.015 Sum_probs=31.1
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCC------------------------cCCCcc---hhhhhhhhchhhhhh
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGI------------------------PAGESN---GRRGYMLTYIIAYIR 56 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~------------------------~~G~~~---g~~W~~~rf~~pYlR 56 (96)
+.+-++|...... .....+.++++..|=. .+++.. .-+|.+.||.+||+.
T Consensus 145 ~~VNiiG~~~~~~---~d~~el~~lL~~~Gi~v~~~~~~~~t~~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP~~~ 221 (398)
T PF00148_consen 145 RSVNIIGGSPLGP---GDLEELKRLLEELGIEVNAVFPGGTTLEEIRKAPEAALNIVLCPEGGPYAAEWLEERFGIPYLY 221 (398)
T ss_dssp SEEEEEEESTBTH---HHHHHHHHHHHHTTEEEEEEEETTBCHHHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-EEEE
T ss_pred CceEEecCcCCCc---ccHHHHHHHHHHCCCceEEEeCCCCCHHHHHhCCcCcEEEEeccchhhHHHHHHHHHhCCCeee
Confidence 4567777653221 4456667777777651 224443 448999999999988
No 51
>PF11334 DUF3136: Protein of unknown function (DUF3136); InterPro: IPR021483 This family of proteins with unknown function appear to be restricted to Cyanobacteria.
Probab=21.19 E-value=15 Score=22.47 Aligned_cols=30 Identities=17% Similarity=0.214 Sum_probs=25.6
Q ss_pred hhhhhhhcccceeeeeccccccchHHHHHHH
Q psy13836 55 IRDFACDYYFIGDSFETSVPWDKTVLLCINV 85 (96)
Q Consensus 55 lRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v 85 (96)
||- |..-|.-.+-++-++-|+++..||+..
T Consensus 17 Lr~-Lv~~G~~~~~i~rTvCW~rL~~Lh~~L 46 (64)
T PF11334_consen 17 LRR-LVADGRSEEEIRRTVCWDRLETLHRSL 46 (64)
T ss_pred HHH-HHHcCCCHHHHHHHHHHHHHHHHHHhc
Confidence 553 778888999999999999999999764
No 52
>TIGR00166 S6 ribosomal protein S6. MRP17 protein is a component of the small ribosomal subunit in mitochondria, and is shown here to be an ortholog of S6.
Probab=21.13 E-value=1.4e+02 Score=18.59 Aligned_cols=61 Identities=8% Similarity=-0.010 Sum_probs=35.7
Q ss_pred EEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeecc
Q psy13836 6 LRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETS 72 (96)
Q Consensus 6 ll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA 72 (96)
+.++-=+.+++ ++...+++.++..++||...... .|=..++..|- .. ..+--|+.=.|+..
T Consensus 6 ~~Il~p~~~~~-~~~~~~~~~~~i~~~gg~i~~~~---~~G~r~LaY~I-~k-~~~G~Y~~~~f~~~ 66 (93)
T TIGR00166 6 IFLVRPTLSEE-VKGQIERYKKVITLNGAEIVRSE---DWGKRRLAYPI-KK-QLRAHYVLMNFSGE 66 (93)
T ss_pred EEEECCCCcHH-HHHHHHHHHHHHHhCCCEEEEEE---eecceecceEc-CC-CceEEEEEEEEEeC
Confidence 44444444555 88889999999999999765432 45444444332 22 23333555556554
No 53
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=21.00 E-value=54 Score=24.40 Aligned_cols=21 Identities=29% Similarity=0.289 Sum_probs=17.4
Q ss_pred eeccccccchHHHHHHHHHHH
Q psy13836 69 FETSVPWDKTVLLCINVKKRL 89 (96)
Q Consensus 69 lETA~~Ws~~~~l~~~v~~al 89 (96)
+--++||.+++++++.+++.+
T Consensus 253 l~P~vP~y~Lp~~h~~L~~~~ 273 (285)
T cd03511 253 MYPSVPFHALPKLHELIKDDL 273 (285)
T ss_pred cCCCCcHhHHHHHHHHHHHhC
Confidence 456799999999999988765
No 54
>PRK05330 coproporphyrinogen III oxidase; Provisional
Probab=20.69 E-value=1.7e+02 Score=22.94 Aligned_cols=77 Identities=6% Similarity=-0.050 Sum_probs=56.0
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHHH
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTREC 93 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~~ 93 (96)
.++++..-.+..+++|.+||...= .-.++|-+.-|-+|-..+.-===|++.|.+.+ -.|.+.-++.++|-+++..++
T Consensus 138 ~~eD~~~FH~~~K~~Cd~~~~~~Y--~~fK~wCD~YFyi~HR~E~RGvGGiFfD~l~~-~~~e~~f~F~~~vg~~fl~aY 214 (300)
T PRK05330 138 FEEDAVHFHRTAKDACDPFGPEYY--PRFKKWCDEYFYLKHRNEPRGVGGIFFDDLNS-PGFERDFAFTQAVGDAFLDAY 214 (300)
T ss_pred ChHHHHHHHHHHHHHHhccChhhh--HHHHHHHHHhcChhhcCCCCCCCeeecCCCCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 456778888999999999997642 34889999999888755444445788898876 356666677777766665554
No 55
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=20.68 E-value=41 Score=22.39 Aligned_cols=48 Identities=8% Similarity=-0.145 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHcCC-CcCCCcchhhhhhhhch-hhhhhhhhhhcccceeeeeccc
Q psy13836 21 NEDKIYSIAKRYGG-IPAGESNGRRGYMLTYI-IAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 21 ~~~~~~~i~~~~GG-~~~G~~~g~~W~~~rf~-~pYlRd~l~~~G~~~DTlETA~ 73 (96)
....+.+++...-- +.+|. +...+|. -|-+++.+.+.|+-++.+.|..
T Consensus 47 ~~~~l~~ll~~~peivliGT-----G~~~~~~~~~~~~~~l~~~Gi~ve~m~T~a 96 (117)
T cd05126 47 QPEELEELLEEGVEVIVIGT-----GQSGALKVPPETVEKLEKRGVEVLVLPTEE 96 (117)
T ss_pred CHHHHHHHHhcCCCEEEEcC-----CCCccccCCHHHHHHHHhcCCEEEEcChHH
Confidence 34445566643222 34565 6677754 6788889999999999999864
No 56
>cd05125 Mth938_2P1-like Mth938_2P1-like domain. This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.
Probab=20.57 E-value=58 Score=21.64 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=26.9
Q ss_pred CcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccc
Q psy13836 35 IPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 35 ~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+.+|. +...+|--|-+++.|.++|+-+|.+.|..
T Consensus 58 liiGt-----G~~~~~~~~~~~~~l~~~gi~vevm~T~~ 91 (114)
T cd05125 58 LVIGT-----GRKSRPLSPELRKYFKKLGIAVEVVDTRN 91 (114)
T ss_pred EEEcc-----CCCCCcCCHHHHHHHHHcCCEEEEECHHH
Confidence 45665 33367778889999999999999999964
No 57
>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known. However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....
Probab=20.47 E-value=2.2e+02 Score=17.36 Aligned_cols=68 Identities=13% Similarity=0.139 Sum_probs=44.2
Q ss_pred HHhHhHHHHHHHHHHHcCCCc---CCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccc--hHHHHHHHHHH
Q psy13836 16 EDVKNNEDKIYSIAKRYGGIP---AGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKR 88 (96)
Q Consensus 16 ~~v~~~~~~~~~i~~~~GG~~---~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~--~~~l~~~v~~a 88 (96)
...........+++...|+.. +=...|. -|..+.++.++..+|+-.-..-...||+| ++..+.-+++.
T Consensus 47 ~~~~~~~~~l~~~~~~~~~~~p~~i~tD~g~-----~f~~~~~~~~~~~~~i~~~~~~~~~p~~ng~vEr~~~~l~~~ 119 (120)
T PF00665_consen 47 ETAEAALRALKRAIEKRGGRPPRVIRTDNGS-----EFTSHAFEAWCKHLGIKHVFTPPYTPQQNGFVERFNRTLKRR 119 (120)
T ss_dssp SHHHHHHHHHHHHHHHHS-SE-SEEEEESCH-----HHHSHHHHHHHHHHT-EEEESSTSSTHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccceeccccccc-----ccccchhhhHHHHcCceEeeCCCCChhhccHHHHHHHHHHHh
Confidence 356666777777888888852 2122222 35555778889999988888888888888 66666666543
No 58
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=20.43 E-value=80 Score=24.04 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=19.1
Q ss_pred eeccccccchHHHHHHHHHHHHH
Q psy13836 69 FETSVPWDKTVLLCINVKKRLTR 91 (96)
Q Consensus 69 lETA~~Ws~~~~l~~~v~~al~~ 91 (96)
+=-++||-+++++|++.++....
T Consensus 237 ~~P~vP~y~Lp~~h~~~~~~~~~ 259 (288)
T cd03509 237 DLPTLPWYDLPRLYRARRDAYLR 259 (288)
T ss_pred CCCCCCcccHHHHHHHhHHHHhh
Confidence 44689999999999999887543
No 59
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=20.32 E-value=2e+02 Score=16.94 Aligned_cols=30 Identities=13% Similarity=0.202 Sum_probs=23.8
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcC
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYG 33 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~G 33 (96)
...+++-++++.+..+..++...+++++.|
T Consensus 41 ~f~~~~~v~~~~~~~~~l~~~L~~l~~~~~ 70 (76)
T PF13740_consen 41 RFTLIMLVSIPEDSLERLESALEELAEELG 70 (76)
T ss_dssp EEEEEEEEEESHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEEEeCcccHHHHHHHHHHHHHHCC
Confidence 345778888888888888888888887776
No 60
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=20.28 E-value=1e+02 Score=17.89 Aligned_cols=19 Identities=21% Similarity=0.464 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHcCCCcC
Q psy13836 19 KNNEDKIYSIAKRYGGIPA 37 (96)
Q Consensus 19 ~~~~~~~~~i~~~~GG~~~ 37 (96)
+.-.+.+..++.+|||..+
T Consensus 5 ~~Y~~~~~~~l~~~GG~~l 23 (65)
T PF07045_consen 5 QEYREAVPPILEKYGGRVL 23 (65)
T ss_dssp HHHHHHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHHHHcCCEEE
Confidence 4456788899999999765
No 61
>PF04304 DUF454: Protein of unknown function (DUF454); InterPro: IPR007401 This is a predicted membrane protein.
Probab=20.27 E-value=55 Score=19.33 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=13.2
Q ss_pred hhh-hhhchhhhhhhhhhhcc
Q psy13836 44 RGY-MLTYIIAYIRDFACDYY 63 (96)
Q Consensus 44 ~W~-~~rf~~pYlRd~l~~~G 63 (96)
+|. ++|+-+||++|.-.+.|
T Consensus 3 ~Wl~~h~~~g~~I~~w~~~r~ 23 (71)
T PF04304_consen 3 RWLLNHRLFGPYIRNWEEHRG 23 (71)
T ss_pred HHHHcCchhHHHHHHHHHCCC
Confidence 344 34777899998655544
Done!