Query psy13836
Match_columns 96
No_of_seqs 103 out of 271
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:41:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2uuu_A Alkyldihydroxyacetoneph 99.5 1.5E-13 5E-18 111.4 8.2 93 3-95 391-483 (584)
2 4bby_A Alkyldihydroxyacetoneph 99.3 3.6E-12 1.2E-16 104.1 9.1 93 3-95 462-554 (658)
3 1e8g_A Vanillyl-alcohol oxidas 97.9 2.3E-05 7.7E-10 62.9 7.4 87 4-91 350-449 (560)
4 1f0x_A DLDH, D-lactate dehydro 97.8 6.9E-06 2.3E-10 66.6 1.6 84 4-91 389-479 (571)
5 3pm9_A Putative oxidoreductase 97.6 0.00025 8.6E-09 56.0 8.1 83 4-92 288-377 (476)
6 2exr_A Cytokinin dehydrogenase 97.1 0.00011 3.8E-09 58.5 0.8 76 3-87 310-401 (524)
7 1wvf_A 4-cresol dehydrogenase 96.2 0.015 5.2E-07 45.9 7.5 84 4-91 319-418 (520)
8 1hsk_A UDP-N-acetylenolpyruvoy 82.7 0.85 2.9E-05 34.0 3.0 39 3-41 270-309 (326)
9 1w1o_A Cytokinin dehydrogenase 70.8 1.7 5.9E-05 34.2 1.7 83 4-89 325-418 (534)
10 3r8j_A Heme-binding protein 2; 51.4 18 0.0006 25.5 4.0 48 3-54 137-186 (212)
11 2ozl_A PDHE1-A type I, pyruvat 50.8 55 0.0019 24.6 6.9 76 11-94 229-326 (365)
12 4b0y_A Heme-binding protein 2; 48.6 23 0.00078 25.3 4.2 48 3-54 156-205 (227)
13 2fvt_A Conserved hypothetical 48.0 6.5 0.00022 26.0 1.1 28 45-72 76-103 (135)
14 2gm2_A Conserved hypothetical 42.7 7.8 0.00027 25.4 0.9 29 45-73 73-101 (132)
15 1l7b_A DNA ligase; BRCT, autos 41.3 13 0.00045 22.7 1.7 47 7-56 11-70 (92)
16 2fi9_A Outer membrane protein; 40.7 9.6 0.00033 24.7 1.1 27 46-72 78-104 (128)
17 2ab1_A Hypothetical protein; H 40.6 8.7 0.0003 24.8 0.9 29 45-73 70-99 (122)
18 3vej_A Ubiquitin-like protein 39.0 8.3 0.00028 20.9 0.5 16 70-85 3-18 (41)
19 4e17_B Catenin alpha-1; four h 36.5 23 0.00079 19.0 2.0 25 71-95 6-34 (40)
20 1zzk_A Heterogeneous nuclear r 34.1 45 0.0015 19.3 3.3 27 8-34 53-79 (82)
21 1qs0_A 2-oxoisovalerate dehydr 33.5 1.6E+02 0.0054 22.4 7.4 76 9-93 271-368 (407)
22 3cpk_A Uncharacterized protein 31.5 17 0.00057 24.7 1.1 29 45-73 97-125 (150)
23 2kxh_B Peptide of FAR upstream 31.0 56 0.0019 16.5 3.1 19 19-37 11-29 (31)
24 4id3_A DNA repair protein REV1 30.5 28 0.00096 20.0 2.0 16 22-37 23-38 (92)
25 2gov_A P22HBP, heme-binding pr 29.8 26 0.0009 24.1 2.0 48 3-54 132-181 (195)
26 4hhu_A OR280; engineered prote 29.0 89 0.003 20.8 4.4 32 5-36 83-115 (170)
27 3l3e_A DNA topoisomerase 2-bin 27.8 36 0.0012 20.6 2.2 25 9-36 21-45 (107)
28 1ydo_A HMG-COA lyase; TIM-barr 27.6 55 0.0019 23.9 3.5 65 18-88 120-198 (307)
29 2kjw_A TS9, 30S ribosomal prot 25.7 56 0.0019 20.2 2.8 37 14-53 57-93 (96)
30 2cw6_A Hydroxymethylglutaryl-C 25.6 1E+02 0.0035 22.1 4.6 63 21-89 122-198 (298)
31 3zzp_A TS9, ribosomal protein 25.1 69 0.0023 18.9 3.0 21 14-34 57-77 (77)
32 2ewh_A Major carboxysome shell 24.8 1.2E+02 0.004 18.8 4.2 30 5-34 44-73 (98)
33 3l46_A Protein ECT2; alternati 24.5 55 0.0019 20.6 2.6 18 21-38 36-53 (112)
34 1wf6_A Similar to S.pombe -RAD 24.3 69 0.0023 20.2 3.1 27 4-36 44-70 (132)
35 1g3k_A ATP-dependent protease 24.3 80 0.0027 20.6 3.5 46 7-52 42-89 (174)
36 1e2k_A Thymidine kinase; trans 23.2 36 0.0012 25.4 1.8 57 4-62 2-59 (331)
37 2d8m_A DNA-repair protein XRCC 23.1 54 0.0019 20.6 2.4 25 9-36 28-52 (129)
38 2cou_A ECT2 protein; BRCT doma 22.8 60 0.002 19.9 2.5 17 21-37 27-43 (109)
39 2z3b_A ATP-dependent protease 22.8 76 0.0026 21.0 3.2 48 7-54 48-97 (180)
40 1m4y_A ATP-dependent protease 22.4 86 0.003 20.3 3.4 48 7-54 42-91 (171)
41 3av9_A Integrase, IN; protein- 22.3 1.6E+02 0.0054 18.8 5.3 65 21-90 68-134 (183)
42 4e18_B Catenin alpha-1; four h 21.9 55 0.0019 18.9 2.0 25 71-95 25-53 (59)
43 3ewb_X 2-isopropylmalate synth 21.3 1E+02 0.0034 22.3 3.8 64 21-89 122-192 (293)
44 3p3d_A Nucleoporin 53; structu 21.1 58 0.002 21.5 2.3 26 42-67 61-87 (132)
45 1vju_A Coproporphyrinogen III 20.9 1.1E+02 0.0038 23.0 4.0 78 13-93 145-222 (309)
46 2ftp_A Hydroxymethylglutaryl-C 20.4 87 0.003 22.5 3.3 62 20-87 124-199 (302)
47 3r3t_A 30S ribosomal protein S 20.1 84 0.0029 19.1 2.8 53 14-71 18-70 (99)
No 1
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=99.45 E-value=1.5e-13 Score=111.45 Aligned_cols=93 Identities=20% Similarity=0.298 Sum_probs=86.9
Q ss_pred cccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHH
Q psy13836 3 KTPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC 82 (96)
Q Consensus 3 ~~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~ 82 (96)
..|++++.|+|+++.|+.+.+++.++|+++||..+++...+.|+..|+..||+|+.++++|.+.+++||++|||++++++
T Consensus 391 ~~~~llve~~g~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~lW~~r~~~~~~l~~~~~~~g~~~~~~Dv~VP~~~l~~~~ 470 (584)
T 2uuu_A 391 NVCLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAETTVSYANLQTLW 470 (584)
T ss_dssp TCEEEEEEEEECHHHHHHHHHHHHHHHHTTTCEEEEEESTTHHHHGGGGHHHHHHHHHTTTEEEEEEEEEEEHHHHHHHH
T ss_pred ccEEEEEEEecChHHHHHHHHHHHHHHHHCCCccchHHHHHHHHHhhhchHHHHhhhcccCCccccceEEeeHHHHHHHH
Confidence 46899999999999999999999999999999888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy13836 83 INVKKRLTRECTE 95 (96)
Q Consensus 83 ~~v~~al~~~~~~ 95 (96)
+.+++.+.+.+.+
T Consensus 471 ~~~~~~l~~~~~~ 483 (584)
T 2uuu_A 471 KDAKQTFVKHFKD 483 (584)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHh
Confidence 9999998887764
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=99.33 E-value=3.6e-12 Score=104.13 Aligned_cols=93 Identities=55% Similarity=1.066 Sum_probs=88.2
Q ss_pred cccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHH
Q psy13836 3 KTPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLC 82 (96)
Q Consensus 3 ~~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~ 82 (96)
..|++++.|||+.+.+..+.+.+.++++++||+..++..++.|...||..||+|+..++.+.+.+++||++|||++++++
T Consensus 462 ~~~~~~~~~eg~~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~avP~~~l~~~~ 541 (658)
T 4bby_A 462 QLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYMRDLGLEYYIIGESFETSAPWDRVVDLC 541 (658)
T ss_dssp TCEEEEEEEEECHHHHHHHHHHHHHHHHTTTCEECCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEEGGGHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHhhCcchhhhhHHHHHHHHhhHHHHHHhhccccCCccceEEEEeeHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy13836 83 INVKKRLTRECTE 95 (96)
Q Consensus 83 ~~v~~al~~~~~~ 95 (96)
+++++.+.+.+.+
T Consensus 542 ~~v~~~l~~~~~~ 554 (658)
T 4bby_A 542 RNVKERIRRECKE 554 (658)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 3
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=97.94 E-value=2.3e-05 Score=62.89 Aligned_cols=87 Identities=8% Similarity=-0.147 Sum_probs=64.9
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcC--CCcc--hhhhhhhhchh----hhhhhh---hhhcccceeeeecc
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPA--GESN--GRRGYMLTYII----AYIRDF---ACDYYFIGDSFETS 72 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~--g~~W~~~rf~~----pYlRd~---l~~~G~~~DTlETA 72 (96)
.|++++.|+|+++.|+.+.+++.+|++++|+..+ .+.+ .+.|.. |+.. |+++.. .|..|-...+++++
T Consensus 350 ~~~l~~e~~g~~~~v~~~~~~i~~i~~~~~~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~ 428 (560)
T 1e8g_A 350 RWNFYGALYGPEPIRRVLWETIKDAFSAIPGVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELKWIDWLPNGAHLFFSPI 428 (560)
T ss_dssp SEEEEEEEESCHHHHHHHHHHHHHHHTTSTTCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGGGGGGSTTEEEEEECBE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHhCCCceeeccccchhhhhHHH-HHhhcccCchhhhhccccccCCCceEEEeee
Confidence 5789999999999999999999999999998533 3222 344554 7654 776653 23333335668999
Q ss_pred ccc--cchHHHHHHHHHHHHH
Q psy13836 73 VPW--DKTVLLCINVKKRLTR 91 (96)
Q Consensus 73 ~~W--s~~~~l~~~v~~al~~ 91 (96)
+|| |+++++++.+++.+.+
T Consensus 429 vP~~~~~l~~~~~~~~~~~~~ 449 (560)
T 1e8g_A 429 AKVSGEDAMMQYAVTKKRCQE 449 (560)
T ss_dssp ECSSHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999776543
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=97.76 E-value=6.9e-06 Score=66.61 Aligned_cols=84 Identities=10% Similarity=0.055 Sum_probs=63.5
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcC--CCcchhhhhhhhchhh----hhhhhhhh-cccceeeeecccccc
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPA--GESNGRRGYMLTYIIA----YIRDFACD-YYFIGDSFETSVPWD 76 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~--G~~~g~~W~~~rf~~p----YlRd~l~~-~G~~~DTlETA~~Ws 76 (96)
.+.+++-|+|+.... ..+.+.+++++++|... .++.+++|...||..+ ++|+...+ .| .+.++|||+||+
T Consensus 389 ~~~llve~~g~~~~~--~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~R~~~~~~~~~~r~~~~~~~g-~~~~~Dvavp~~ 465 (571)
T 1f0x_A 389 EHHLLLKMAGDGVGE--AKSWLVDYFKQAEGDFFVCTPEEGSKAFLHRFAAAGAAIRYQAVHSDEVE-DILALDIALRRN 465 (571)
T ss_dssp SEEEEEEECTTHHHH--HHHHHHHHHHHSSCEEEECCHHHHHHHHHHHTTHHHHHHHHHHHTTTTEE-EEEEEEEECCTT
T ss_pred ceEEEEEEecCcHHH--HHHHHHHHHHHcCCCeeecCccHHHHHHHHhhhhhhHHHHhhhcchhhcC-CceEEEEEecHH
Confidence 378899999887643 25566678888866433 5677888888999997 68887665 33 368999999999
Q ss_pred chHHHHHHHHHHHHH
Q psy13836 77 KTVLLCINVKKRLTR 91 (96)
Q Consensus 77 ~~~~l~~~v~~al~~ 91 (96)
+++.+ +.+++.+.+
T Consensus 466 ~l~~~-~~~~~~l~~ 479 (571)
T 1f0x_A 466 DTEWY-EHLPPEIDS 479 (571)
T ss_dssp CSCCS-CCCCHHHHT
T ss_pred HhHHH-HHHHHHHHh
Confidence 99999 888777654
No 5
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=97.58 E-value=0.00025 Score=56.03 Aligned_cols=83 Identities=11% Similarity=-0.039 Sum_probs=62.0
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCc---CC---Ccchhhhhhhhchhh-hhhhhhhhcccceeeeecccccc
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIP---AG---ESNGRRGYMLTYIIA-YIRDFACDYYFIGDSFETSVPWD 76 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~---~G---~~~g~~W~~~rf~~p-YlRd~l~~~G~~~DTlETA~~Ws 76 (96)
.+++++-|+|+.+.++.+.+++.+++.++|+.. +- +...+-|. .|-..+ .++ ..|. ..+.++++|||
T Consensus 288 ~~~llve~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~a~~~~~~~~lW~-~R~~~~~~~~----~~g~-~~~~Dv~vP~~ 361 (476)
T 3pm9_A 288 PWYVLIELSSPRDDARAALESILERGFEDGIVVDAAIANSVQQQQAFWK-LREEISPAQK----PEGG-SIKHDISVPVA 361 (476)
T ss_dssp SEEEEEEEEESSSCHHHHHHHHHHHHHHTTCCCEEEECCSHHHHHHHHH-HHHTHHHHTG----GGCC-EECCEEECCGG
T ss_pred CeEEEEEEccCcHHHHHHHHHHHHHHHhcCCCcceEEeCCHHHHHHHHH-HHHHHHHHHh----hcCC-ceeEEEEeeHH
Confidence 589999999999889899999999999998752 11 12334564 444443 333 3354 68999999999
Q ss_pred chHHHHHHHHHHHHHH
Q psy13836 77 KTVLLCINVKKRLTRE 92 (96)
Q Consensus 77 ~~~~l~~~v~~al~~~ 92 (96)
+++++++.+++.+.+.
T Consensus 362 ~l~~~~~~~~~~~~~~ 377 (476)
T 3pm9_A 362 AVPQFIEQANAAVVAL 377 (476)
T ss_dssp GHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999888764
No 6
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=97.08 E-value=0.00011 Score=58.52 Aligned_cols=76 Identities=9% Similarity=-0.094 Sum_probs=57.0
Q ss_pred cccEEEEEE-----ec-ChHHhHhHHHHHHHHHHHcCCCcCCCc----------chhhhhhhhchhhhhhhhhhhcccce
Q psy13836 3 KTPLRMLLF-----IS-DPEDVKNNEDKIYSIAKRYGGIPAGES----------NGRRGYMLTYIIAYIRDFACDYYFIG 66 (96)
Q Consensus 3 ~~cll~~gf-----eG-~~~~v~~~~~~~~~i~~~~GG~~~G~~----------~g~~W~~~rf~~pYlRd~l~~~G~~~ 66 (96)
..|++++-| +| +++.|+.+.+.+.++++.+||....+. ....|...++..|.+.. .
T Consensus 310 ~~~~llve~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~W~~R~~~~~a~~~-----~--- 381 (524)
T 2exr_A 310 GSVLYCLELGLHYRDSDSNSTIDKRVERLIGRLRFNEGLRFEVDLPYVDFLLRVKRSEEIAKENGTWETPH-----P--- 381 (524)
T ss_dssp CSEEEEEEEEEEECTTSCHHHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHTTTHHHHHHHHHTTCSSSCC-----C---
T ss_pred ccEEEEEEEEeecCCCCCHHHHHHHHHHHHHHHHhCCCeEeecccchhhhhhhhhhHHHHhhhhcccccCC-----C---
Confidence 347888888 89 788899999999999999999755432 22337766665554432 1
Q ss_pred eeeeccccccchHHHHHHHHH
Q psy13836 67 DSFETSVPWDKTVLLCINVKK 87 (96)
Q Consensus 67 DTlETA~~Ws~~~~l~~~v~~ 87 (96)
++++++|||+++++.+.|.+
T Consensus 382 -~~Dv~VP~s~l~~~~~~v~~ 401 (524)
T 2exr_A 382 -WLNLFVSKRDIGDFNRTVFK 401 (524)
T ss_dssp -CEEEEEEHHHHHHHHHHCCC
T ss_pred -eeEEEECHHHHHHHHHHHHH
Confidence 36999999999999988743
No 7
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=96.22 E-value=0.015 Score=45.91 Aligned_cols=84 Identities=10% Similarity=-0.157 Sum_probs=53.4
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhh----------------hccccee
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFAC----------------DYYFIGD 67 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~----------------~~G~~~D 67 (96)
.+++++.|+|++++++.+.+.+.++++++|+..+. ...+.+ +-...++|..+. ..+.+.+
T Consensus 319 ~~~l~~~~~g~~~~v~~~~~~i~~~~~~~~~~~~~---~~~~~~-~~~~w~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (520)
T 1wvf_A 319 AWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIV---TQEEAG-DTQPFKYRAQLMSGVPNLQEFGLYNWRGGGGSMWF 394 (520)
T ss_dssp SEEEEEEEEESHHHHHHHHHHHHHHHHHHTCCEEE---EHHHHT-TCTTHHHHHHHHTTCCCCGGGGGGGSSCTEEEEEE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHHHHHHHcCCeEEE---ecccch-hhhHHHHHHHhhccCchhhhhccccccCCCceEEe
Confidence 46888889999999999999999999999986432 112211 122223333222 0123333
Q ss_pred eeeccccccchHHHHHHHHHHHHH
Q psy13836 68 SFETSVPWDKTVLLCINVKKRLTR 91 (96)
Q Consensus 68 TlETA~~Ws~~~~l~~~v~~al~~ 91 (96)
+.-...+|++++++++.+++.+.+
T Consensus 395 d~~vp~~~~~l~~~~~~~~~~~~~ 418 (520)
T 1wvf_A 395 APVSEARGSECKKQAAMAKRVLHK 418 (520)
T ss_dssp CBEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHHH
Confidence 444555669999999888776543
No 8
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=82.71 E-value=0.85 Score=34.00 Aligned_cols=39 Identities=18% Similarity=0.022 Sum_probs=34.3
Q ss_pred cccEEEEEEec-ChHHhHhHHHHHHHHHHHcCCCcCCCcc
Q psy13836 3 KTPLRMLLFIS-DPEDVKNNEDKIYSIAKRYGGIPAGESN 41 (96)
Q Consensus 3 ~~cll~~gfeG-~~~~v~~~~~~~~~i~~~~GG~~~G~~~ 41 (96)
+.|++++-++| +.+++....+.+.+++++++|+.++.++
T Consensus 270 ~~a~~lvn~~ga~~~~v~~~~~~v~~~v~~~~gi~le~Ev 309 (326)
T 1hsk_A 270 KHAGFMVNVDNGTATDYENLIHYVQKTVKEKFGIELNREV 309 (326)
T ss_dssp SCTTCEEECSSCCHHHHHHHHHHHHHHHHHHHSCCCCBCS
T ss_pred cccEEEEECCCCCHHHHHHHHHHHHHHHHHhhCCeeEEEE
Confidence 45788999999 7788999999999999999999888764
No 9
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=70.80 E-value=1.7 Score=34.19 Aligned_cols=83 Identities=8% Similarity=-0.055 Sum_probs=44.1
Q ss_pred ccEEEEEEe----cC-h--HHhHhHHHHHHHHHHHcCCCcCC-Ccchhhhhhhhchhhh--hhhh-hhhcccceeeeecc
Q psy13836 4 TPLRMLLFI----SD-P--EDVKNNEDKIYSIAKRYGGIPAG-ESNGRRGYMLTYIIAY--IRDF-ACDYYFIGDSFETS 72 (96)
Q Consensus 4 ~cll~~gfe----G~-~--~~v~~~~~~~~~i~~~~GG~~~G-~~~g~~W~~~rf~~pY--lRd~-l~~~G~~~DTlETA 72 (96)
++++++.+. |+ + +.++...+.+.++++.+|+.... ..+...|.+ ++..++ +|.. ++..+- -..+++
T Consensus 325 ~~~l~ie~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~y~~~~~-~~~~~~w~~r~~~~~~~~~--~~~d~~ 401 (534)
T 1w1o_A 325 TTVYSIEATLNYDNATAAAAAVDQELASVLGTLSYVEGFAFQRDVAYAAFLD-RVHGEEVALNKLGLWRVPH--PWLNMF 401 (534)
T ss_dssp SEEEEEEEEEEC-------CHHHHHHHHHHTTCCCCTTCEEEEEEEHHHHHT-HHHHHHHHHHHTTCSSSCC--CCEEEE
T ss_pred ceEEEEEEEEecCCCccchhhhHHHHHHHHHhhcccCCcceeccchHHHHhh-hhhhhHHHHhhccccccCC--ccccEE
Confidence 455665554 74 4 67788888888888888774222 111122221 222221 2221 121111 023888
Q ss_pred ccccchHHHHHHHHHHH
Q psy13836 73 VPWDKTVLLCINVKKRL 89 (96)
Q Consensus 73 ~~Ws~~~~l~~~v~~al 89 (96)
+|||+++++.+.+.+.+
T Consensus 402 vP~s~l~~~~~~~~~~l 418 (534)
T 1w1o_A 402 VPRSRIADFDRGVFKGI 418 (534)
T ss_dssp EEGGGHHHHHHHHTTTT
T ss_pred ecHHHHHhHHHHHHHHH
Confidence 99999999998886644
No 10
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=51.35 E-value=18 Score=25.51 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=36.9
Q ss_pred cccEEEEEEec--ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhh
Q psy13836 3 KTPLRMLLFIS--DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 54 (96)
Q Consensus 3 ~~cll~~gfeG--~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pY 54 (96)
..++.++.|.| +++.+..+.++..+.++++|-...|. -.+-.+|+.|+
T Consensus 137 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 186 (212)
T 3r8j_A 137 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 186 (212)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHTTCCBCSS----CEEEEESSSSS
T ss_pred CEEEEEEEeCCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 45789999999 55668889999999999999666443 34556777776
No 11
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=50.83 E-value=55 Score=24.64 Aligned_cols=76 Identities=9% Similarity=0.001 Sum_probs=47.3
Q ss_pred Eec-ChHHhHhHHHHHHHHHHHcCCCcC-------------C--------Ccchhhhhhhhchhhhhhhhhhhcccceee
Q psy13836 11 FIS-DPEDVKNNEDKIYSIAKRYGGIPA-------------G--------ESNGRRGYMLTYIIAYIRDFACDYYFIGDS 68 (96)
Q Consensus 11 feG-~~~~v~~~~~~~~~i~~~~GG~~~-------------G--------~~~g~~W~~~rf~~pYlRd~l~~~G~~~DT 68 (96)
..| +...|....+.+.+.+++.+|-.+ + +...+.|.+.+=-.+-+++.|.+.|++.+
T Consensus 229 VdG~D~~av~~a~~~A~~~~r~~~gP~lIe~~t~R~~gHs~~D~~~~Yr~~~e~~~~~~~~dpi~~~~~~L~~~g~~~~- 307 (365)
T 2ozl_A 229 VDGMDILCVREATRFAAAYCRSGKGPILMELQTYRYHGHEMSDPGVSYRTREEIQEVRSKSDPIMLLKDRMVNSNLASV- 307 (365)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTCCCEEEEEECCCSSCSSTTCCSCSSSCHHHHHHHHHHHCHHHHHHHHHHHTTSSCH-
T ss_pred EeCCCHHHHHHHHHHHHHHHHhCCCCEEEEEEeecCCCCCCCCCCcccCCHHHHHHHHhCCCHHHHHHHHHHhcCCCCH-
Confidence 466 356677777777777777776321 1 11234566544333457888999999876
Q ss_pred eeccccccchHHHHHHHHHHHHHHHH
Q psy13836 69 FETSVPWDKTVLLCINVKKRLTRECT 94 (96)
Q Consensus 69 lETA~~Ws~~~~l~~~v~~al~~~~~ 94 (96)
+.+.++.+++++.|.++++
T Consensus 308 -------~~~~~i~~~~~~~v~~a~~ 326 (365)
T 2ozl_A 308 -------EELKEIDVEVRKEIEDAAQ 326 (365)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666543
No 12
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=48.56 E-value=23 Score=25.28 Aligned_cols=48 Identities=13% Similarity=0.068 Sum_probs=34.8
Q ss_pred cccEEEEEEec--ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhh
Q psy13836 3 KTPLRMLLFIS--DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 54 (96)
Q Consensus 3 ~~cll~~gfeG--~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pY 54 (96)
..++.++.|.| +++.+..+.++..+.+++.|-...|. -.+-.+|+.|+
T Consensus 156 ~~~vaVr~FsG~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~y~~A~Yd~P~ 205 (227)
T 4b0y_A 156 EMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK----VYYTAGYNSPV 205 (227)
T ss_dssp CEEEEEEEESSCCCHHHHHHHHHHHHHHHHHHTCCBCSS----CEEEEECC---
T ss_pred CEEEEEEEecCcCCHHHHHHHHHHHHHHHHhCCCccCCC----cEEEEEeCCCC
Confidence 45789999999 55668889999999999999666443 34556788776
No 13
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=47.98 E-value=6.5 Score=25.99 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=24.7
Q ss_pred hhhhhchhhhhhhhhhhcccceeeeecc
Q psy13836 45 GYMLTYIIAYIRDFACDYYFIGDSFETS 72 (96)
Q Consensus 45 W~~~rf~~pYlRd~l~~~G~~~DTlETA 72 (96)
+...+|--|-+++.|.+.|+-+|.+.|.
T Consensus 76 G~~~~~l~p~l~~~l~~~GI~vE~M~T~ 103 (135)
T 2fvt_A 76 GADVWIAPRQLREALRGVNVVLDTMQTG 103 (135)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHH
Confidence 5566787789999999999999999996
No 14
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=42.69 E-value=7.8 Score=25.40 Aligned_cols=29 Identities=3% Similarity=-0.115 Sum_probs=25.0
Q ss_pred hhhhhchhhhhhhhhhhcccceeeeeccc
Q psy13836 45 GYMLTYIIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 45 W~~~rf~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+...+|--|-+++.|.+.|+-+|.+.|..
T Consensus 73 G~~~~~l~p~~~~~l~~~GI~vE~m~T~a 101 (132)
T 2gm2_A 73 GERQQFPSTDVLAACLTRGIGLEAMTNAA 101 (132)
T ss_dssp TTSCCCCCHHHHHHHHHHTCEEEEECHHH
T ss_pred CCCCCcCCHHHHHHHHHcCCEEEEeCHHH
Confidence 55667888999999999999999999953
No 15
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=41.33 E-value=13 Score=22.75 Aligned_cols=47 Identities=11% Similarity=0.212 Sum_probs=31.8
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCC------------cCCCcchhhhhhh-hchhhhhh
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGI------------PAGESNGRRGYML-TYIIAYIR 56 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~------------~~G~~~g~~W~~~-rf~~pYlR 56 (96)
.++.|+|.-.. .+..+.+++.++||. .+|+.+|.+..+. .+.+|-+.
T Consensus 11 ~~~v~TG~l~~---~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~ 70 (92)
T 1l7b_A 11 LTFVITGELSR---PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLT 70 (92)
T ss_dssp CEEECSTTTTS---CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEE
T ss_pred cEEEEecCCCC---CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEe
Confidence 35678886544 577888899999994 3477777776555 45555443
No 16
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=40.68 E-value=9.6 Score=24.72 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=23.7
Q ss_pred hhhhchhhhhhhhhhhcccceeeeecc
Q psy13836 46 YMLTYIIAYIRDFACDYYFIGDSFETS 72 (96)
Q Consensus 46 ~~~rf~~pYlRd~l~~~G~~~DTlETA 72 (96)
...+|--|-+++.|.++|+-+|.+.|.
T Consensus 78 ~~~~~l~p~~~~~l~~~GI~vE~m~T~ 104 (128)
T 2fi9_A 78 VELLRLPEELRVLLWEKRISSDTMSTG 104 (128)
T ss_dssp TSCCCCCHHHHHHHHHTTCEEEEECHH
T ss_pred CCCCCCCHHHHHHHHHcCCEEEEeCHH
Confidence 336788899999999999999999995
No 17
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=40.62 E-value=8.7 Score=24.84 Aligned_cols=29 Identities=7% Similarity=-0.049 Sum_probs=24.9
Q ss_pred hhhhhc-hhhhhhhhhhhcccceeeeeccc
Q psy13836 45 GYMLTY-IIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 45 W~~~rf-~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+...+| -.|-+++.|.++|+-+|.+.|..
T Consensus 70 G~~~~~~~~~~~~~~l~~~gI~ve~m~T~~ 99 (122)
T 2ab1_A 70 GMSEALKVPSSTVEYLKKHGIDVRVLQTEQ 99 (122)
T ss_dssp CSSCCSCCCHHHHHHHHHTTCEEEEECHHH
T ss_pred CCCCccCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 567788 66899999999999999999853
No 18
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=38.96 E-value=8.3 Score=20.86 Aligned_cols=16 Identities=38% Similarity=0.659 Sum_probs=12.7
Q ss_pred eccccccchHHHHHHH
Q psy13836 70 ETSVPWDKTVLLCINV 85 (96)
Q Consensus 70 ETA~~Ws~~~~l~~~v 85 (96)
.-.+||+.+..|.++-
T Consensus 3 ~l~VPWd~Ie~lL~~~ 18 (41)
T 3vej_A 3 DLTVPWDDIEALLKNN 18 (41)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHH
Confidence 3469999999998764
No 19
>4e17_B Catenin alpha-1; four helix bundle, cell adhesion; 2.30A {Mus musculus}
Probab=36.47 E-value=23 Score=18.97 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=17.1
Q ss_pred cccccc----chHHHHHHHHHHHHHHHHh
Q psy13836 71 TSVPWD----KTVLLCINVKKRLTRECTE 95 (96)
Q Consensus 71 TA~~Ws----~~~~l~~~v~~al~~~~~~ 95 (96)
++.+|+ ++..-|++|++||+.-+.+
T Consensus 6 s~~tr~~rkerIv~eCnavrqALQdLlse 34 (40)
T 4e17_B 6 SSCTRDDRRERIVAECNAVRQALQDLLSE 34 (40)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555 5788899999999987765
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=34.09 E-value=45 Score=19.33 Aligned_cols=27 Identities=15% Similarity=0.407 Sum_probs=22.0
Q ss_pred EEEEecChHHhHhHHHHHHHHHHHcCC
Q psy13836 8 MLLFISDPEDVKNNEDKIYSIAKRYGG 34 (96)
Q Consensus 8 ~~gfeG~~~~v~~~~~~~~~i~~~~GG 34 (96)
++-..|+++.|+.....+.++++..+|
T Consensus 53 ~v~I~G~~~~v~~A~~~I~~~i~~~~g 79 (82)
T 1zzk_A 53 IITITGTQDQIQNAQYLLQNSVKQYSG 79 (82)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEeCHHHHHHHHHHHHHHHHhccC
Confidence 344567899999999999999988766
No 21
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=33.47 E-value=1.6e+02 Score=22.43 Aligned_cols=76 Identities=9% Similarity=-0.064 Sum_probs=45.3
Q ss_pred EEEecCh-HHhHhHHHHHHHHHHHcCCCcC-------------CCcc--------hhhhhhhhchhhhhhhhhhhcccce
Q psy13836 9 LLFISDP-EDVKNNEDKIYSIAKRYGGIPA-------------GESN--------GRRGYMLTYIIAYIRDFACDYYFIG 66 (96)
Q Consensus 9 ~gfeG~~-~~v~~~~~~~~~i~~~~GG~~~-------------G~~~--------g~~W~~~rf~~pYlRd~l~~~G~~~ 66 (96)
+-..|.+ ..|....+.+.+.+++.+|-.+ +..+ .+.|.+ +=-+.-+++.|.+.|++.
T Consensus 271 ~~VdG~D~~av~~a~~~A~~~ar~~~gP~lIe~~t~R~~Ghs~~Dd~~~Yr~~~e~~~~~~-~DPi~~~~~~L~~~g~~~ 349 (407)
T 1qs0_A 271 LRVDGNDFVAVYAASRWAAERARRGLGPSLIEWVTYRAGPHSTSDDPSKYRPADDWSHFPL-GDPIARLKQHLIKIGHWS 349 (407)
T ss_dssp EEEETTCHHHHHHHHHHHHHHHHTTSCCEEEEEECCCCSCSSTTCCGGGTSCTTHHHHCTT-CCHHHHHHHHHHHTTSCC
T ss_pred EEEcCCCHHHHHHHHHHHHHHHHhcCCCEEEEEEeeccCCcCCCCCccccCCHHHHHHHhc-CCHHHHHHHHHHHCCCCC
Confidence 3446643 5677777777777777776211 1112 235654 311235889999999987
Q ss_pred eeeeccccccchHHHHHHHHHHHHHHH
Q psy13836 67 DSFETSVPWDKTVLLCINVKKRLTREC 93 (96)
Q Consensus 67 DTlETA~~Ws~~~~l~~~v~~al~~~~ 93 (96)
+ +.+.++.+++++.|.+++
T Consensus 350 ~--------~~~~~i~~~~~~~v~~a~ 368 (407)
T 1qs0_A 350 E--------EEHQATTAEFEAAVIAAQ 368 (407)
T ss_dssp H--------HHHHHHHHHHHHHHHHHH
T ss_pred H--------HHHHHHHHHHHHHHHHHH
Confidence 7 445566666666665554
No 22
>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A
Probab=31.53 E-value=17 Score=24.65 Aligned_cols=29 Identities=7% Similarity=-0.168 Sum_probs=25.0
Q ss_pred hhhhhchhhhhhhhhhhcccceeeeeccc
Q psy13836 45 GYMLTYIIAYIRDFACDYYFIGDSFETSV 73 (96)
Q Consensus 45 W~~~rf~~pYlRd~l~~~G~~~DTlETA~ 73 (96)
+...+|-.|-++..|.++|+-+|.+.|..
T Consensus 97 G~~~~~l~p~~~~~L~~~GIgvE~M~T~a 125 (150)
T 3cpk_A 97 GRRQHLLGPEQVRPLLAMGVGVEAMDTQA 125 (150)
T ss_dssp TTSCCCCCHHHHHHHHTTTCEEEEECHHH
T ss_pred CCCCCCCCHHHHHHHHHcCCEEEEeCHHH
Confidence 55667888999999999999999999854
No 23
>2kxh_B Peptide of FAR upstream element-binding protein 1; RRM, FIR, FBP, protein-protein complex, protein binding; NMR {Homo sapiens}
Probab=31.05 E-value=56 Score=16.45 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=14.6
Q ss_pred HhHHHHHHHHHHHcCCCcC
Q psy13836 19 KNNEDKIYSIAKRYGGIPA 37 (96)
Q Consensus 19 ~~~~~~~~~i~~~~GG~~~ 37 (96)
.....++++|+.+.||-..
T Consensus 11 adA~~RaRQIaAKig~~~~ 29 (31)
T 2kxh_B 11 KDALQRARQIAAKIGGDAG 29 (31)
T ss_dssp HHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhcCCCC
Confidence 3456788999999998654
No 24
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=30.55 E-value=28 Score=20.01 Aligned_cols=16 Identities=13% Similarity=0.011 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCCcC
Q psy13836 22 EDKIYSIAKRYGGIPA 37 (96)
Q Consensus 22 ~~~~~~i~~~~GG~~~ 37 (96)
+..+.++++.+||...
T Consensus 23 ~~~l~~~i~~~GG~~~ 38 (92)
T 4id3_A 23 RLQLHEMIVLHGGKFL 38 (92)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCEEE
Confidence 5567889999999643
No 25
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=29.81 E-value=26 Score=24.10 Aligned_cols=48 Identities=10% Similarity=0.012 Sum_probs=34.9
Q ss_pred cccEEEEEEecC--hHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhh
Q psy13836 3 KTPLRMLLFISD--PEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAY 54 (96)
Q Consensus 3 ~~cll~~gfeG~--~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pY 54 (96)
..++.++.|.|. ++.+..+.++..+.+++.|....+. ..+-.+|+.|+
T Consensus 132 ~~~vav~~F~G~~~~~~~~~~~~~L~~~L~~~g~~~~~~----~~~~a~Yn~P~ 181 (195)
T 2gov_A 132 GITVYSTQFGGYAKEADYVAHATQLRTTLEGTPATYQGD----VYYCAGYDPPM 181 (195)
T ss_dssp SCEEEEEEEESCCCHHHHHHHHHHHHHHTTTSSCCEEEE----EEEEEESSCCS
T ss_pred CeEEEEEEECCccCHHHHHHHHHHHHHHHHHCCCcccCC----cEEEEEeCCCC
Confidence 457899999994 4668888888889888887655432 34556777775
No 26
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=29.03 E-value=89 Score=20.84 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=24.0
Q ss_pred cEEEEEEecCh-HHhHhHHHHHHHHHHHcCCCc
Q psy13836 5 PLRMLLFISDP-EDVKNNEDKIYSIAKRYGGIP 36 (96)
Q Consensus 5 cll~~gfeG~~-~~v~~~~~~~~~i~~~~GG~~ 36 (96)
.++.+.|+|++ +..+-..+...+-++++-|..
T Consensus 83 gvm~i~f~gddlea~ekalkemirqarkfagtv 115 (170)
T 4hhu_A 83 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTV 115 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred eEEEEEEecCcHHHHHHHHHHHHHHHHhhcceE
Confidence 58899999987 446666666667788888854
No 27
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=27.77 E-value=36 Score=20.56 Aligned_cols=25 Identities=12% Similarity=0.134 Sum_probs=17.3
Q ss_pred EEEecChHHhHhHHHHHHHHHHHcCCCc
Q psy13836 9 LLFISDPEDVKNNEDKIYSIAKRYGGIP 36 (96)
Q Consensus 9 ~gfeG~~~~v~~~~~~~~~i~~~~GG~~ 36 (96)
+.+.|... ..+..+.+++.++||..
T Consensus 21 i~isg~~~---~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 21 VCVSKKLS---KKQSELNGIAASLGADY 45 (107)
T ss_dssp EEECGGGG---GGHHHHHHHHHHTTCEE
T ss_pred EEEeCCCh---HhHHHHHHHHHHcCCEE
Confidence 34455433 45778889999999954
No 28
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=27.62 E-value=55 Score=23.91 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=40.6
Q ss_pred hHhHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhchhhhhhhh---hhhccc----ceeeeeccccccchHHHHH
Q psy13836 18 VKNNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCI 83 (96)
Q Consensus 18 v~~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DTlETA~~Ws~~~~l~~ 83 (96)
+-.....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||.-.+.| ..+.++.+
T Consensus 120 ~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~v~~lv~ 193 (307)
T 1ydo_A 120 SLHILKQVNNDAQKANLTTRAYLSTVFGCP-----YEKDVPIEQVIRLSEALFEFGISELSLGDTIGAANP-AQVETVLE 193 (307)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEECTTCBT-----TTBCCCHHHHHHHHHHHHHHTCSCEEEECSSCCCCH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEEEecCC-----cCCCCCHHHHHHHHHHHHhcCCCEEEEcCCCCCcCH-HHHHHHHH
Confidence 3344566677888888754 2221 3456666665544 466665 7899999988 45666666
Q ss_pred HHHHH
Q psy13836 84 NVKKR 88 (96)
Q Consensus 84 ~v~~a 88 (96)
.+++.
T Consensus 194 ~l~~~ 198 (307)
T 1ydo_A 194 ALLAR 198 (307)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66554
No 29
>2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus}
Probab=25.69 E-value=56 Score=20.21 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=28.1
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhh
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIA 53 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~p 53 (96)
++++++...+++..+..++||...-. +.|=..|+..|
T Consensus 57 ~ee~~~~~ve~~~~iI~~~gG~i~~v---e~WG~R~LAY~ 93 (96)
T 2kjw_A 57 DQSQLALEKEIIQRALENYGARVEKV---EELGLRRLAYP 93 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCSCC---EECCCCCCCCS
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEE---ecccccccccc
Confidence 67889999999999999999986543 35655555444
No 30
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=25.64 E-value=1e+02 Score=22.07 Aligned_cols=63 Identities=16% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHcCCCc-------CCCcchhhhhhhhchhhhhhhh---hhhccc----ceeeeeccccccchHHHHHHHH
Q psy13836 21 NEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDF---ACDYYF----IGDSFETSVPWDKTVLLCINVK 86 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~---l~~~G~----~~DTlETA~~Ws~~~~l~~~v~ 86 (96)
....+.+.++++|-.. .|.. ..+|.+..|+-+. +.++|. ++||...+.| ..+.++.+.++
T Consensus 122 ~~~~~i~~a~~~G~~v~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P-~~~~~lv~~l~ 195 (298)
T 2cw6_A 122 RFDAILKAAQSANISVRGYVSCALGCP-----YEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTP-GIMKDMLSAVM 195 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTCBT-----TTBSCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEEEEEeeCC-----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCcCH-HHHHHHHHHHH
Confidence 4455667788887644 2221 3445555554443 466665 7899999888 55666666666
Q ss_pred HHH
Q psy13836 87 KRL 89 (96)
Q Consensus 87 ~al 89 (96)
+.+
T Consensus 196 ~~~ 198 (298)
T 2cw6_A 196 QEV 198 (298)
T ss_dssp HHS
T ss_pred HhC
Confidence 543
No 31
>3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus}
Probab=25.08 E-value=69 Score=18.90 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=18.5
Q ss_pred ChHHhHhHHHHHHHHHHHcCC
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGG 34 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG 34 (96)
++++++....++..+..++||
T Consensus 57 ~ee~~~~~vek~~~~i~~~Gg 77 (77)
T 3zzp_A 57 DQSQLQNEKEIIQRALENYGA 77 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHHhcCC
Confidence 567799999999999999997
No 32
>2ewh_A Major carboxysome shell protein 1A; bacterial microcompartment domain; 1.40A {Halothiobacillus neapolitanus} SCOP: d.58.56.1 PDB: 2g13_A 3h8y_A
Probab=24.85 E-value=1.2e+02 Score=18.80 Aligned_cols=30 Identities=13% Similarity=0.084 Sum_probs=26.0
Q ss_pred cEEEEEEecChHHhHhHHHHHHHHHHHcCC
Q psy13836 5 PLRMLLFISDPEDVKNNEDKIYSIAKRYGG 34 (96)
Q Consensus 5 cll~~gfeG~~~~v~~~~~~~~~i~~~~GG 34 (96)
.+.++.+.|+-..|+...+...+.+++.|.
T Consensus 44 g~~tv~i~Gdv~aV~aAv~ag~~~~~~~g~ 73 (98)
T 2ewh_A 44 GYVTVLVRGETGAVNAAVRAGADACERVGD 73 (98)
T ss_dssp TEEEEEEEECHHHHHHHHHHHHHHHTTSTT
T ss_pred eEEEEEEEEcHHHHHHHHHHHHHHHHhcCC
Confidence 477889999999999999999998887764
No 33
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=24.47 E-value=55 Score=20.60 Aligned_cols=18 Identities=11% Similarity=0.169 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHcCCCcCC
Q psy13836 21 NEDKIYSIAKRYGGIPAG 38 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~~G 38 (96)
.++.+.+++..+||.+.+
T Consensus 36 er~~l~~~i~~~GG~~~~ 53 (112)
T 3l46_A 36 EKTNMEEMTEMQGGKYLP 53 (112)
T ss_dssp HHHHHHHHHHHTTCEECC
T ss_pred HHHHHHHHHHHcCCEECc
Confidence 577888899999998765
No 34
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=24.33 E-value=69 Score=20.18 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=18.3
Q ss_pred ccEEEEEEecChHHhHhHHHHHHHHHHHcCCCc
Q psy13836 4 TPLRMLLFISDPEDVKNNEDKIYSIAKRYGGIP 36 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~~~~~~~~i~~~~GG~~ 36 (96)
.++.+.||.+ .....+..+++.|||..
T Consensus 44 ~~i~i~G~~~------~~~~~L~~~i~~~Gg~v 70 (132)
T 1wf6_A 44 CRIYLCGFSG------RKLDKLRRLINSGGGVR 70 (132)
T ss_dssp CEEEEESCCS------HHHHHHHHHHHHTTCEE
T ss_pred EEEEEECCCh------HHHHHHHHHHHHCCCEE
Confidence 3455556642 34667888999999964
No 35
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=24.33 E-value=80 Score=20.60 Aligned_cols=46 Identities=7% Similarity=-0.167 Sum_probs=33.8
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCCC--cchhhhhhhhchh
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGE--SNGRRGYMLTYII 52 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G~--~~g~~W~~~rf~~ 52 (96)
+.+++.|...+.....+.+..-++.|-+..... ...+.|++.||.-
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~r 89 (174)
T 1g3k_A 42 VLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALR 89 (174)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTGG
T ss_pred EEEEeCccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhccCcC
Confidence 467999999999998888888888888632111 4567787777643
No 36
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=23.16 E-value=36 Score=25.39 Aligned_cols=57 Identities=9% Similarity=-0.113 Sum_probs=31.8
Q ss_pred ccEEEEEEecChHHhHh-HHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhc
Q psy13836 4 TPLRMLLFISDPEDVKN-NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDY 62 (96)
Q Consensus 4 ~cll~~gfeG~~~~v~~-~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~ 62 (96)
++.++|.|||....=+- +.+...+.++..| +..-.+||..|.. -+..|.||+++.+.
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~~~g-v~~trEPg~~w~~-~~g~~~Lr~~yld~ 59 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD-IVYVPEPMTYWRV-LGASETIANIYTTQ 59 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC----CC-EEEECCCHHHHHT-TSSSCHHHHHHHHH
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhhhCC-EEEEeCCCCcccc-cccHHHHHHHHhCh
Confidence 46789999997755222 2233333334444 7777889988743 11236777777653
No 37
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.13 E-value=54 Score=20.60 Aligned_cols=25 Identities=8% Similarity=0.008 Sum_probs=17.1
Q ss_pred EEEecChHHhHhHHHHHHHHHHHcCCCc
Q psy13836 9 LLFISDPEDVKNNEDKIYSIAKRYGGIP 36 (96)
Q Consensus 9 ~gfeG~~~~v~~~~~~~~~i~~~~GG~~ 36 (96)
+.|.|.. ...+..+.+++..+||.+
T Consensus 28 i~itG~~---~~~r~~l~~~i~~~Gg~v 52 (129)
T 2d8m_A 28 VVLSGFQ---NPFRSELRDKALELGAKY 52 (129)
T ss_dssp EEEESCC---TTHHHHHHHHHHHTTEEE
T ss_pred EEEeCCC---cHHHHHHHHHHHHcCCEE
Confidence 3345543 235678889999999964
No 38
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=22.84 E-value=60 Score=19.85 Aligned_cols=17 Identities=12% Similarity=0.210 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHcCCCcC
Q psy13836 21 NEDKIYSIAKRYGGIPA 37 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~~ 37 (96)
.+..+.+++..+||.+.
T Consensus 27 ~r~~l~~~i~~~GG~~~ 43 (109)
T 2cou_A 27 EKHSMEEMTEMQGGSYL 43 (109)
T ss_dssp HHHHHHHHHHHHTCBCC
T ss_pred HHHHHHHHHHHcCCEEe
Confidence 46677889999999764
No 39
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=22.80 E-value=76 Score=20.96 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=33.3
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCC--Ccchhhhhhhhchhhh
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYIIAY 54 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~g~~W~~~rf~~pY 54 (96)
+.+++.|...+.....+.+..-++.|-|..+. ....+.|.+.+|.-||
T Consensus 48 i~~~~aG~~aD~~~l~~~~~~~~~~y~g~~~~~~~~l~~~~~~~~~~rp~ 97 (180)
T 2z3b_A 48 VLAGFAGSVADAFTLFEKFEAKLEEYNGNLKRAAVELAKEWRSDKVLRKL 97 (180)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGGC
T ss_pred EEEEeCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhhhCcCcc
Confidence 56799999999999999999888888752111 1345567666654454
No 40
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=22.39 E-value=86 Score=20.32 Aligned_cols=48 Identities=10% Similarity=0.017 Sum_probs=31.8
Q ss_pred EEEEEecChHHhHhHHHHHHHHHHHcCCCcCC--Ccchhhhhhhhchhhh
Q psy13836 7 RMLLFISDPEDVKNNEDKIYSIAKRYGGIPAG--ESNGRRGYMLTYIIAY 54 (96)
Q Consensus 7 l~~gfeG~~~~v~~~~~~~~~i~~~~GG~~~G--~~~g~~W~~~rf~~pY 54 (96)
+.+++.|...+.....+.++.-+..|.+...- ....+.|++.||.-||
T Consensus 42 i~~~~aG~~aD~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (171)
T 1m4y_A 42 VLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRL 91 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTGGGC
T ss_pred EEEEeCccHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhCCCCce
Confidence 56799999999888888888888877754210 1234466666654444
No 41
>3av9_A Integrase, IN; protein-protein interactions, HIV, recombination-inhibitor C; 1.70A {Human immunodeficiency virus type 1} PDB: 3ava_A 3avb_A 3avc_A 3avg_A 3avh_A 3avi_A 3avj_A 3avk_A 3avl_A 3avm_A 3avn_A 3nf6_A* 3nf7_A* 3nf8_A* 3nf9_A* 3nfa_A* 3avf_A
Probab=22.31 E-value=1.6e+02 Score=18.77 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccc--hHHHHHHHHHHHH
Q psy13836 21 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDK--TVLLCINVKKRLT 90 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~--~~~l~~~v~~al~ 90 (96)
....+.+++.++|-..+=..+|.. |....+++++...|+-...--.-.||+| ++..+..+++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~i~sDnG~e-----f~s~~~~~~~~~~gI~~~~s~p~~P~~nG~vEr~~~tlk~~l~ 134 (183)
T 3av9_A 68 TAYFLLKLAGRWPVKTVHTDNGSN-----FTSTTVKAACWWAGIKQEDGIPYNPQSQGVIESMNKELKKIIG 134 (183)
T ss_dssp HHHHHHHHHHHSCCCEEECSSHHH-----HHCHHHHHHHHHHTCEEECCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcEEEecCchh-----cchHHHHHHHHHCCCEEeecCCCCCcchhHHHHHHHHHHHHHH
Confidence 334455567777543333444443 3334457788888887776666777776 4555555555443
No 42
>4e18_B Catenin alpha-1; four helix bundle, cell adhesion; 2.40A {Mus musculus}
Probab=21.95 E-value=55 Score=18.88 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=16.0
Q ss_pred cccccc----chHHHHHHHHHHHHHHHHh
Q psy13836 71 TSVPWD----KTVLLCINVKKRLTRECTE 95 (96)
Q Consensus 71 TA~~Ws----~~~~l~~~v~~al~~~~~~ 95 (96)
++.+|+ ++..-|++|++||++-+++
T Consensus 25 s~~tr~~rke~Iv~eCnavrqALQdLlsE 53 (59)
T 4e18_B 25 SSCTRDDRRERIVAECNAVRQALQDLLSE 53 (59)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 566776 4788999999999987765
No 43
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=21.27 E-value=1e+02 Score=22.31 Aligned_cols=64 Identities=14% Similarity=0.046 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhh---hhhhccc----ceeeeeccccccchHHHHHHHHHHH
Q psy13836 21 NEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRD---FACDYYF----IGDSFETSVPWDKTVLLCINVKKRL 89 (96)
Q Consensus 21 ~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd---~l~~~G~----~~DTlETA~~Ws~~~~l~~~v~~al 89 (96)
..+.+.+.++++|...-..-. ...|.+..|+.+ .+.++|. ++||.-.++| ..+..+.+.+++.+
T Consensus 122 ~~~~~v~~a~~~g~~v~~~~~----d~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P-~~v~~lv~~l~~~~ 192 (293)
T 3ewb_X 122 SIKHHISYARQKFDVVQFSPE----DATRSDRAFLIEAVQTAIDAGATVINIPDTVGYTNP-TEFGQLFQDLRREI 192 (293)
T ss_dssp HHHHHHHHHHTTCSCEEEEEE----TGGGSCHHHHHHHHHHHHHTTCCEEEEECSSSCCCH-HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEEEEEec----cCCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCCH-HHHHHHHHHHHHhc
Confidence 345566678888764432211 234555555433 3566774 6799999999 45667777766543
No 44
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=21.11 E-value=58 Score=21.54 Aligned_cols=26 Identities=15% Similarity=-0.049 Sum_probs=19.8
Q ss_pred hhhhhhhhchhhh-hhhhhhhccccee
Q psy13836 42 GRRGYMLTYIIAY-IRDFACDYYFIGD 67 (96)
Q Consensus 42 g~~W~~~rf~~pY-lRd~l~~~G~~~D 67 (96)
|..|.+-||+.|+ -...|..-|-+.+
T Consensus 61 g~NWikItYds~~~A~rAL~~NG~ii~ 87 (132)
T 3p3d_A 61 GNSWTKITYDNPASAVDALLENGAVFN 87 (132)
T ss_dssp ETTEEEEEBSSHHHHHHHHTTTTCEET
T ss_pred CCcEEEEEcCCHHHHHHHHHhCCeEeC
Confidence 7899999999996 4445777776654
No 45
>1vju_A Coproporphyrinogen III oxidase; structural genomics, PSI, protein structure initiative, structural genomics of pathogenic protozoa consortium; 1.40A {Leishmania major} SCOP: d.248.1.1 PDB: 2qt8_A* 3dwr_A 3dws_A* 3ejo_A 3e8j_A*
Probab=20.91 E-value=1.1e+02 Score=23.02 Aligned_cols=78 Identities=14% Similarity=0.101 Sum_probs=58.5
Q ss_pred cChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeeccccccchHHHHHHHHHHHHHH
Q psy13836 13 SDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRE 92 (96)
Q Consensus 13 G~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlETA~~Ws~~~~l~~~v~~al~~~ 92 (96)
+.++++..--+..++.|..||.-.= .-.|+|-+--|-+|---+.-===|++.|-|.+ -+|++.-++.++|-+++..+
T Consensus 145 ~~~eD~~hFH~~~k~aCd~~~~~~Y--p~fK~wCDeYFyl~HR~E~RGVGGIFfDdl~~-~~~e~~faf~~~vg~afl~a 221 (309)
T 1vju_A 145 AVEEDCRDFHQVAQDLCKPFGADVY--ARFKGWCDEYFFIPYRNEARGIGGLFFDDLNE-WPFEKCFEFVQAVGKGYMDA 221 (309)
T ss_dssp CCHHHHHHHHHHHHHHHGGGCTTHH--HHHHHHHHHHSEEGGGTEESSSEEEEEEEECS-SCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCchhh--HHHHHHHHHhcchhhcCCCCCCCeEecCCCCC-CCHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999985431 24889999999888744434445788999986 46777777888887777665
Q ss_pred H
Q psy13836 93 C 93 (96)
Q Consensus 93 ~ 93 (96)
+
T Consensus 222 Y 222 (309)
T 1vju_A 222 Y 222 (309)
T ss_dssp H
T ss_pred H
Confidence 4
No 46
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=20.36 E-value=87 Score=22.53 Aligned_cols=62 Identities=15% Similarity=-0.045 Sum_probs=37.3
Q ss_pred hHHHHHHHHHHHcCCCc-------CCCcchhhhhhhhchhhhhhhhhh---hccc----ceeeeeccccccchHHHHHHH
Q psy13836 20 NNEDKIYSIAKRYGGIP-------AGESNGRRGYMLTYIIAYIRDFAC---DYYF----IGDSFETSVPWDKTVLLCINV 85 (96)
Q Consensus 20 ~~~~~~~~i~~~~GG~~-------~G~~~g~~W~~~rf~~pYlRd~l~---~~G~----~~DTlETA~~Ws~~~~l~~~v 85 (96)
...+.+.+.++++|-.. .|. + ..+|.+..|+.++.. +.|. ++||.-.+.|. .+.++.+.+
T Consensus 124 ~~~~~~v~~a~~~G~~V~~~l~~~~~~-e----~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~-~~~~lv~~l 197 (302)
T 2ftp_A 124 ERFVPVLEAARQHQVRVRGYISCVLGC-P----YDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAG-ATRRLIEAV 197 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEECTTCB-T----TTBCCCHHHHHHHHHHHHHTTCSEEEEEESSSCCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEEeeC-C----cCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCcCHH-HHHHHHHHH
Confidence 44466778888888754 222 1 134666667776654 7775 77888887663 334444444
Q ss_pred HH
Q psy13836 86 KK 87 (96)
Q Consensus 86 ~~ 87 (96)
++
T Consensus 198 ~~ 199 (302)
T 2ftp_A 198 AS 199 (302)
T ss_dssp TT
T ss_pred HH
Confidence 33
No 47
>3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis}
Probab=20.15 E-value=84 Score=19.10 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=34.5
Q ss_pred ChHHhHhHHHHHHHHHHHcCCCcCCCcchhhhhhhhchhhhhhhhhhhcccceeeeec
Q psy13836 14 DPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFET 71 (96)
Q Consensus 14 ~~~~v~~~~~~~~~i~~~~GG~~~G~~~g~~W~~~rf~~pYlRd~l~~~G~~~DTlET 71 (96)
++++++...+++..+..++||..... +.|=..++..|- .. ..+-.|+.=+|+.
T Consensus 18 ~~e~~~~~~~~~~~~i~~~gg~i~~~---e~wG~R~LAY~I-~k-~~~G~Y~l~~f~a 70 (99)
T 3r3t_A 18 EEEAQKALVERFAGVLTNNGAEIINT---KEWGKRRLAYEI-ND-LREGFYMILNVNA 70 (99)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCCCC---CCCCSCCCCCCC-CC-CCCSCCCCCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEE---EEeeccccCcCc-CC-CCEEEEEEEEEEe
Confidence 46779999999999999999987643 356444443332 22 3345555555554
Done!