RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13836
         (96 letters)



>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
           lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
           {Dictyostelium discoideum} PDB: 2uuv_A*
          Length = 584

 Score = 79.4 bits (196), Expect = 4e-19
 Identities = 19/91 (20%), Positives = 36/91 (39%)

Query: 5   PLRMLLFISDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYF 64
            L ++ F    + V  +   ++ I  +      G + G+      Y + YIRDF  D+  
Sbjct: 393 CLSIIGFEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNM 452

Query: 65  IGDSFETSVPWDKTVLLCINVKKRLTRECTE 95
             D  ET+V +     L  + K+   +   +
Sbjct: 453 WVDVAETTVSYANLQTLWKDAKQTFVKHFKD 483


>4fbw_A DNA repair protein RAD32; DNA double-strand break repair,
          nuclease, hydrolase; HET: DNA; 2.20A
          {Schizosaccharomyces pombe} PDB: 4fcx_B*
          Length = 417

 Score = 29.1 bits (64), Expect = 0.17
 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)

Query: 48 LTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLT 90
             I+   R+   D   + GD F  + P  K +   +   +   
Sbjct: 41 FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNC 84


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 2.6
 Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 25/94 (26%)

Query: 11  FISDPEDVKNNEDKIYSI--AKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDY------ 62
           F+ +  D K+ +D   SI   +    I   +        L + +                
Sbjct: 29  FVDN-FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL-------LSKQEEMVQ 80

Query: 63  YFIGDSFETSVPWDKTVLLCINVKKRLTRECTEK 96
            F+ +    +  +         +   +  E  + 
Sbjct: 81  KFVEEVLRINYKF---------LMSPIKTEQRQP 105


>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
          C-terminal domain, reduced form at PH7, oxidoreductase;
          0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
          2fwf_A 2fwg_A 1vrs_D 1uc7_A
          Length = 134

 Score = 25.5 bits (56), Expect = 2.7
 Identities = 5/23 (21%), Positives = 11/23 (47%), Gaps = 2/23 (8%)

Query: 17 DVKNNEDKIYSIAKRYG--GIPA 37
          +V  N+ +  ++ K     G+P 
Sbjct: 72 NVTANDAQDVALLKHLNVLGLPT 94


>2i2x_A MTAB, methyltransferase 1; TIM barrel and helix bundle (MTAB),
           rossman fold and helix B (MTAC); HET: B13; 2.50A
           {Methanosarcina barkeri}
          Length = 461

 Score = 25.0 bits (54), Expect = 5.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)

Query: 23  DKIYSIAKRYGGIPAGESN 41
             I  IAK+ G I AG+++
Sbjct: 201 TDISKIAKKTGTISAGDTD 219


>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical
           dehydratase, lyase; 1.82A {Clostridium difficile} PDB:
           3o3n_A* 3o3o_A
          Length = 408

 Score = 24.3 bits (52), Expect = 9.9
 Identities = 6/45 (13%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 17  DVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACD 61
            ++   + +  +A  Y  +    +  R      Y +  + +  CD
Sbjct: 295 ALQYEVNDLDGMAVAYSTMFNNVNLDRM---TKYRVDSLVEGKCD 336


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.323    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0450    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,533,020
Number of extensions: 81608
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 232
Number of HSP's successfully gapped: 9
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.1 bits)