RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13836
         (96 letters)



>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
           methylhydroxylase {Pseudomonas putida [TaxId: 303]}
          Length = 279

 Score = 28.5 bits (63), Expect = 0.11
 Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 7/72 (9%)

Query: 11  FISDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYY 63
                E V  N   +  + K+ G                +    L   +  +++F    +
Sbjct: 85  LYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNW 144

Query: 64  FIGDSFETSVPW 75
             G       P 
Sbjct: 145 RGGGGSMWFAPV 156


>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 76

 Score = 24.0 bits (52), Expect = 2.0
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 23 DKIYSIAKRYGGIPAGESNGRRGY 46
          D IY      GG   G  NGR G+
Sbjct: 33 DIIYVTRVEEGGWWEGTLNGRTGW 56


>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 98

 Score = 23.3 bits (50), Expect = 4.8
 Identities = 7/24 (29%), Positives = 8/24 (33%)

Query: 23 DKIYSIAKRYGGIPAGESNGRRGY 46
            I  + K       GE NG  G 
Sbjct: 57 QLINVMNKDDPDWWQGEINGVTGL 80


>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 62

 Score = 22.0 bits (47), Expect = 8.4
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 23 DKIYSIAKRYGGIPAGESNGRRGY 46
          D I  ++K       GES G+ G 
Sbjct: 28 DIILVLSKVNEEWLEGESKGKVGI 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.141    0.433 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 384,786
Number of extensions: 16757
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 10
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.1 bits)