BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13839
(413 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DKA|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKA|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Apo-Form
pdb|2DKC|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKC|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Substrate Complex
pdb|2DKD|A Chain A, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
pdb|2DKD|B Chain B, Crystal Structure Of N-Acetylglucosamine-Phosphate Mutase,
A Member Of The Alpha-D-Phosphohexomutase Superfamily,
In The Product Complex
Length = 544
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 69 STQPSEDDKGEKGLMFEISEGGFLDIDVRITGPDGNIIYQGERESS 114
S PS D +GEK + E+ + D+ + ++ P +I + RESS
Sbjct: 100 SPSPSNDSEGEKNSLVEVIKNLVSDLKIDLSIPANVVIARDSRESS 145
>pdb|1QE0|A Chain A, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
pdb|1QE0|B Chain B, Crystal Structure Of Apo S. Aureus Histidyl-Trna
Synthetase
Length = 420
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 298 SSSIKHLKKLLNHAKDKLHSKPTNSSSIKHLEKIVFFFFSG-EPNLQ-DMIRQLGESLTS 355
S +KHLK ++N D K N + +KH E ++ F S + L D +R L
Sbjct: 153 SFGLKHLKLVINSVGDMASRKEYNEALVKHFEPVIHEFCSDCQSRLHTDPMRILD---CK 209
Query: 356 VKHEQEYMSVRDRIHRSINESTNS 379
V ++E + RI +NE + +
Sbjct: 210 VDRDKEAIKTAPRITDFLNEESKA 233
>pdb|1PAZ|A Chain A, Refinement Of The Structure Of Pseudoazurin From
Alcaligenes Faecalis S-6 At 1.55 Angstroms Resolution
pdb|1PZA|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZB|A Chain A, The Crystal Structures Of Reduced Pseudoazurin From
Alcaligenes Faecalis S-6 At Two Ph Values
pdb|1PZC|A Chain A, Apo-Pseudoazurin (Metal Free Protein)
pdb|3PAZ|A Chain A, Reduced Native Pseudoazurin From A. Faecalis
pdb|8PAZ|A Chain A, Oxidized Native Pseudoazurin From A. Faecalis
pdb|2P80|D Chain D, Solution Structure Of The Complex Between Nitrite
Reductase And Pseudoazurin From A. Faecalis
pdb|3NYK|A Chain A, The Structure Of Cobalt-Substituted Pseudoazurin From
Alcaligenes Faecalis
Length = 123
Score = 29.6 bits (65), Expect = 3.5, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 25/52 (48%)
Query: 174 PKGLNPAKDKLYSKPTKFVIRTADFLLFCPPSFDLGMIKLLFLSTQPSEDDK 225
P+G K K+ V + +L+ C P + +GMI L+ + P+ D+
Sbjct: 50 PEGAEKFKSKINENYVLTVTQPGAYLVKCTPHYAMGMIALIAVGDSPANLDQ 101
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal Form
Length = 521
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 251 QEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVNHAKDKLHSKPTNSSSIKHLKKLLNH 310
Q Y V D I N + V +F EA V NH H + T + K H
Sbjct: 136 QTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRH 195
Query: 311 AKDKLHSKPTNSSSIK-----HLEKIVF 333
A D+L +K NS++++ +EKI+F
Sbjct: 196 AADELLNK-GNSNNLRVGVHASVEKIIF 222
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From Almond
Length = 536
Score = 28.9 bits (63), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 251 QEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVNHAKDKLHSKPTNSSSIKHLKKLLNH 310
Q Y V D I N + V +F EA V NH H + T + K H
Sbjct: 136 QTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTFDNKGTRH 195
Query: 311 AKDKLHSKPTNSSSIK-----HLEKIVF 333
A D+L +K NS++++ +EKI+F
Sbjct: 196 AADELLNK-GNSNNLRVGVHASVEKIIF 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,129,309
Number of Sequences: 62578
Number of extensions: 505170
Number of successful extensions: 1307
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 11
length of query: 413
length of database: 14,973,337
effective HSP length: 101
effective length of query: 312
effective length of database: 8,652,959
effective search space: 2699723208
effective search space used: 2699723208
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)