RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13839
(413 letters)
>gnl|CDD|216301 pfam01105, EMP24_GP25L, emp24/gp25L/p24 family/GOLD. Members of
this family are implicated in bringing cargo forward
from the ER and binding to coat proteins by their
cytoplasmic domains. This domain corresponds closely to
the beta-strand rich GOLD domain described in. The GOLD
domain is always found combined with lipid- or
membrane-association domains.
Length = 178
Score = 96.9 bits (242), Expect = 1e-23
Identities = 33/68 (48%), Positives = 50/68 (73%)
Query: 341 NLQDMIRQLGESLTSVKHEQEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVTMTIGQI 400
L++ +++L + L +K EQ+Y+ R+ HR NESTNSRVVWWS + +VL+ +++ Q+
Sbjct: 111 PLEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQILVLIGVSVLQV 170
Query: 401 YYLKRFFE 408
YYLKRFFE
Sbjct: 171 YYLKRFFE 178
Score = 80.8 bits (200), Expect = 6e-18
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 3/83 (3%)
Query: 82 LMFEISEGGFLDIDVRITGPDGN---IIYQGERESSGKYTFSAHMSGVYTYCFSNQMSTM 138
+++ GG LDID IT PDGN I + +R+S GK++F+A SG Y +CFSN ST
Sbjct: 26 GSYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKSGGKFSFTATESGEYKFCFSNSFSTF 85
Query: 139 TPKVVMFNMEVLSTQPSEDDKGE 161
+ K V F+++V K +
Sbjct: 86 SSKTVSFDIKVGEEAKDIAKKEK 108
Score = 80.8 bits (200), Expect = 6e-18
Identities = 33/82 (40%), Positives = 48/82 (58%), Gaps = 3/82 (3%)
Query: 1 MFEISEGGFLDIDVRITGPDGN---IIYQGERESSGKYTFSAHMSGVYTYCFSNQMSTMT 57
+++ GG LDID IT PDGN I + +R+S GK++F+A SG Y +CFSN ST +
Sbjct: 27 SYQVISGGNLDIDFTITDPDGNGNVIYSKEDRKSGGKFSFTATESGEYKFCFSNSFSTFS 86
Query: 58 PKVVMFNMEVLSTQPSEDDKGE 79
K V F+++V K +
Sbjct: 87 SKTVSFDIKVGEEAKDIAKKEK 108
Score = 71.9 bits (177), Expect = 7e-15
Identities = 28/63 (44%), Positives = 43/63 (68%), Gaps = 1/63 (1%)
Query: 222 EDDKGEKGEPNLQDMIRQLGESLTSVKHEQEYMSVRDRIHRSINESTNSRVVWWSFFEAV 281
+ K EK +P L++ +++L + L +K EQ+Y+ R+ HR NESTNSRVVWWS + +
Sbjct: 102 DIAKKEKLDP-LEEELKKLEDQLNDIKREQKYLREREARHRETNESTNSRVVWWSIIQIL 160
Query: 282 VLV 284
VL+
Sbjct: 161 VLI 163
>gnl|CDD|218846 pfam05994, FragX_IP, Cytoplasmic Fragile-X interacting family.
CYFIP1/2 (Cytoplasmic fragile X mental retardation
interacting protein) like proteins for a highly
conserved protein family. The function of CYFIPs is
unclear, but CYFIP interaction with fragile X mental
retardation interacting protein (FMRP) involves the
domain of FMRP which also mediating homo- and
heteromerization.
Length = 815
Score = 30.4 bits (69), Expect = 2.3
Identities = 27/123 (21%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 294 KPTNSSSIKHL-KKLLNHAKDKLHSKPTNSSSIKHLEKIVFFFFSGEPNLQDMIRQLGES 352
KP I L K LN A + + TN +H + G + + ++L +
Sbjct: 487 KPPIVQPIYLLGSKALNAAFAAILKQYTNFIGPEHFRALCRLL--GYGGIAVLSQELLKL 544
Query: 353 LTSV--KHEQEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVTMTIGQIYYLKRFFEVR 410
L + YMSV +I R S V+ F A+ L++ F++
Sbjct: 545 LEEAILPFVKIYMSVMPKITRLPPLDYGSHGVYDYFEGALK----DFVSYPELRKLFQLM 600
Query: 411 RVV 413
R +
Sbjct: 601 REL 603
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 29.2 bits (66), Expect = 5.5
Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 6/58 (10%)
Query: 227 EKGEPNLQDMIRQLGESLTSVKHEQEYMSV------RDRIHRSINESTNSRVVWWSFF 278
E+G L ++ ++G L K + +M + R+ + + + +V+ SF
Sbjct: 305 ERGRKRLHKLLAKMGIPLKQAKQKYNHMDMDLKRELRELLEKYAPKYGLDDIVFQSFV 362
>gnl|CDD|226714 COG4263, NosZ, Nitrous oxide reductase [Energy production and
conversion].
Length = 637
Score = 28.7 bits (64), Expect = 7.0
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 20/106 (18%)
Query: 114 SGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNM-------------EVLSTQPSEDDKG 160
GKY + + + ++ MS+ VV+FN+ + ++ D
Sbjct: 244 QGKYAAATCYNSEEGFTLADMMSSERDWVVVFNLKRIEAAVKAGRFKTIGDSKVPVVDGR 303
Query: 161 EKGNRYAKN-------ISAKPKGLNPAKDKLYSKPTKFVIRTADFL 199
R + P G N + D Y + T +
Sbjct: 304 HPYTRDVPVPNTRYIPVPKNPHGHNTSPDGKYFIANGKLSPTFTVI 349
>gnl|CDD|215418 PLN02782, PLN02782, Branched-chain amino acid aminotransferase.
Length = 403
Score = 28.3 bits (63), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 16 ITGPDGNIIYQGERESSGKYTFSAHMSGVYTYCFSNQM 53
+ P G+I Y+G+R S G+ F +YT S QM
Sbjct: 352 VVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQM 389
Score = 28.3 bits (63), Expect = 7.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 98 ITGPDGNIIYQGERESSGKYTFSAHMSGVYTYCFSNQM 135
+ P G+I Y+G+R S G+ F +YT S QM
Sbjct: 352 VVSPVGSITYKGKRVSYGEGGFGTVSQQLYTVLTSLQM 389
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,468,250
Number of extensions: 1919297
Number of successful extensions: 1840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1835
Number of HSP's successfully gapped: 23
Length of query: 413
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 314
Effective length of database: 6,546,556
Effective search space: 2055618584
Effective search space used: 2055618584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.8 bits)