RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13839
(413 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.025
Identities = 36/247 (14%), Positives = 74/247 (29%), Gaps = 58/247 (23%)
Query: 189 TKFVIRTA--DFLLFCPPSFDLGMIKLLF--LSTQPSEDDK---GEKGEPN---LQDMIR 238
K ++ D ++ + LF L ++ E + E N L I+
Sbjct: 42 PKSILSKEEIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99
Query: 239 QLGESLTSVKHEQEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVNHAKDKLHSKPTNS 298
E + Y+ RDR++ N+ V + + L
Sbjct: 100 T--EQRQPSMMTRMYIEQRDRLYND-NQVFAKYNVS-----RLQPYLKLRQAL------- 144
Query: 299 SSIKHLKKLLNH-----AKDKLHSKPTNSSSIK-HLEKIVFFFFSGEPN--------LQD 344
++ K +L K + S ++ ++ +F+ N LQ
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 345 MIRQLGESLTSVKH-----EQEYMSVRDRIHRSINESTNSRV------VW----WSFFE- 388
++ Q+ + TS + S++ + R + V W+ F
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264
Query: 389 -AVVLVT 394
+L+T
Sbjct: 265 SCKILLT 271
Score = 32.1 bits (72), Expect = 0.40
Identities = 37/281 (13%), Positives = 97/281 (34%), Gaps = 58/281 (20%)
Query: 134 QMSTMTPKVV-MFNMEVLSTQPSEDD--KGEKGNRYAKNISAKPKGLNPAKDK-LYSKPT 189
++ T P+ + + E + + D K ++ I + L PA+ + ++
Sbjct: 321 EVLTTNPRRLSIIA-ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD--- 376
Query: 190 KFVIRTADFLLFCPPSFDLGMIKLLFLSTQPSEDDKGEKGEPNLQDMIRQLGESLTSVKH 249
+F PPS + I L + + D + ++ +L + K
Sbjct: 377 -------RLSVF-PPSAHIPTILLSLIWFDVIKSD--------VMVVVNKLHKYSLVEKQ 420
Query: 250 EQE--------YMSVR------DRIHRSINESTNSRVVW--WSFFEAVV-------LVNH 286
+E Y+ ++ +HRSI + N + + + +H
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH 480
Query: 287 AKDKLHSKPTNSSSIKHL------KKLLNHAKDKLHSKPTNSSSIKHLEKIVFFFFSGEP 340
K+ H + + L +K+ H ++ + ++++ L+ + +P
Sbjct: 481 LKNIEHPERMTLFRMVFLDFRFLEQKI-RHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539
Query: 341 NLQDMIRQLGESLTSVKHEQEYMSVR--DRIHRSINESTNS 379
+ ++ + + L K E+ + + D + ++ +
Sbjct: 540 KYERLVNAILDFL--PKIEENLICSKYTDLLRIALMAEDEA 578
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol
biosynthesis, oxidized vitamin E, lipid-binding,
transport, transcription regulation; HET: VTQ; 1.95A
{Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB:
1o6u_A* 1olm_E*
Length = 403
Score = 35.3 bits (81), Expect = 0.035
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 36 TFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDKGEK 80
T + G+Y F N S + K V F +EVL + ++K ++
Sbjct: 352 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKASEEKMKQ 396
Score = 35.3 bits (81), Expect = 0.035
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 118 TFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDKGEK 162
T + G+Y F N S + K V F +EVL + ++K ++
Sbjct: 352 TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKASEEKMKQ 396
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.0 bits (80), Expect = 0.055
Identities = 51/315 (16%), Positives = 89/315 (28%), Gaps = 120/315 (38%)
Query: 102 DGNI-IY-----QGERESSGKYTFSAHMSGVY-TYCFSNQMSTMTPKVVMF------NME 148
+GN + QG + Y F + +Y TY V +
Sbjct: 151 EGNAQLVAIFGGQGNTDD---Y-FE-ELRDLYQTY---------HVLVGDLIKFSAETLS 196
Query: 149 VLSTQPSEDDKGEKGNRYAKNISAKPKGLNPAK--DKLYSKPTKFVIRTADFLLFCPPSF 206
L + +K + +GLN + + + P K D+LL P S
Sbjct: 197 ELIRTTLDAEK-----VF-------TQGLNILEWLENPSNTPDK------DYLLSIPISC 238
Query: 207 DLGMIKLLFLSTQPSEDDKGEKGEPNLQDMIRQLGESLTSVKHEQEYMSVRDRIHRSINE 266
L+ + Q + + + LG + +R + +
Sbjct: 239 -----PLIGV-IQLA----------HYVVTAKLLG-----FTPGE----LRSYLKGATGH 273
Query: 267 STNSRVV----------WWSFFEAVVLVNHAKDKL--------HSKPTNSSSIKHLKKLL 308
S +V W SFF +V L + P S L+ L
Sbjct: 274 SQG--LVTAVAIAETDSWESFFVSVRKAITV---LFFIGVRCYEAYPNTSLPPSILEDSL 328
Query: 309 NHAKDKLHSKPTNSSSIKHLEKIVFFFFSGEPNLQDMIRQLGESLTSVKHEQEYMSVRDR 368
+ P+ SI +L + +QD + + L + K
Sbjct: 329 ENN----EGVPSPMLSISNLTQ---------EQVQDYVNKTNSHLPAGKQ---------- 365
Query: 369 IHRS-INESTNSRVV 382
+ S +N + VV
Sbjct: 366 VEISLVN-GAKNLVV 379
>3irp_X URO-adherence factor A; DEV-IGG fold, cell WALL, hemagglutinin,
peptidoglycan-anchor secreted, virulence, cell adhesion;
1.50A {Staphylococcus saprophyticus subsp} PDB: 3irz_A
3is0_X 3is1_X
Length = 429
Score = 33.1 bits (74), Expect = 0.16
Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 4/97 (4%)
Query: 32 SGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDKGEKGLMFEISEGGF 91
+YTF+ + + T ++ + + ++ F +++ G + S
Sbjct: 274 KSEYTFTNNKNQRDTRAHASSIQFVRAELAGFGGFGGYVWFDKNNDGVQ----NDSNAAA 329
Query: 92 LDIDVRITGPDGNIIYQGERESSGKYTFSAHMSGVYT 128
I V + P G + + +G Y F +G Y
Sbjct: 330 AGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYL 366
Score = 28.9 bits (63), Expect = 3.2
Identities = 10/44 (22%), Positives = 15/44 (34%)
Query: 3 EISEGGFLDIDVRITGPDGNIIYQGERESSGKYTFSAHMSGVYT 46
S I V + P G + + +G Y F +G Y
Sbjct: 323 NDSNAAAAGITVNLLDPTGIRLATTTTDITGHYNFDNLTNGNYL 366
>3dfb_A Metal-binding protein SMBP; four helical bundle, copper, periplasm;
1.90A {Nitrosomonas europaea} PDB: 3u8v_A
Length = 93
Score = 29.4 bits (65), Expect = 0.54
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 11/62 (17%)
Query: 280 AVVLVNHAKDKL---------HSKPTNSSSIKHLKKLLNHAKDKLHSKPTNSS--SIKHL 328
L+ HAK+ L IKHL+ + H ++ T + +I+HL
Sbjct: 26 TDQLLEHAKESLTHAKAASEAGGNTHVGHGIKHLEDAIKHGEEGHVGVATKHAQEAIEHL 85
Query: 329 EK 330
Sbjct: 86 RA 87
>3ucp_A UNDA; beta-barrel, C-type cytochrome, electron transport, C-type H
cell surface, transport protein; HET: HEC; 1.76A
{Shewanella SP} PDB: 3ufh_A* 3ufk_A*
Length = 874
Score = 30.8 bits (67), Expect = 0.89
Identities = 17/135 (12%), Positives = 39/135 (28%), Gaps = 6/135 (4%)
Query: 6 EGGFLDIDVRITGPDGNIIYQGERESSGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNM 65
+ G + +D+ +T +G + G + + ++ + + + +
Sbjct: 64 DNGTVSVDIVLTNANGVPVT-GLEQYAQINAIGLGIAKL-----TPESGKGYKTPQWVSY 117
Query: 66 EVLSTQPSEDDKGEKGLMFEISEGGFLDIDVRITGPDGNIIYQGERESSGKYTFSAHMSG 125
+ + I + G+ I S + SG
Sbjct: 118 INSVKAADPARSLANYSYTDGKDSAGNPITKEVKFTPGDAIQANIESSCKTTCLTVVDSG 177
Query: 126 VYTYCFSNQMSTMTP 140
VY Y F +ST+
Sbjct: 178 VYRYTFQTNLSTLPA 192
>2k7q_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 191
Score = 30.1 bits (67), Expect = 0.92
Identities = 21/144 (14%), Positives = 39/144 (27%), Gaps = 20/144 (13%)
Query: 3 EISEGGFLDIDVRITGPDGNIIY-QGERESSGKYT--FSAHMSGVY--TYCFSNQMSTMT 57
ISE + + P G +R +G F +G + + Q +
Sbjct: 24 NISETDLSLLTATVVPPSGREEPCLLKRLRNGHVGISFVPKETGEHLVHVKKNGQHVASS 83
Query: 58 PKVVMFNMEVLSTQPSEDDKGEKGLM----------FEISEGGFLDIDVRITGPDG---N 104
P V+ + + G+ + + G+ + + I GP N
Sbjct: 84 PIPVVISQSEIGDASRVRVSGQGLHEGHTFEPAEFIIDTRDAGYGGLSLSIEGPSKVDIN 143
Query: 105 IIYQGERESSGKYTFSAHMSGVYT 128
+ Y G Y
Sbjct: 144 TEDLEDGTCRVTYC--PTEPGNYI 165
>2dlg_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Length = 102
Score = 28.2 bits (63), Expect = 1.7
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 82 LMFEISEGGFLDIDVRITGPDGNIIY-QGERESSGKY--TFSAHMSGVYT 128
L +I E D+ +T P G + + + F GV+T
Sbjct: 21 LNLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHT 70
Score = 27.1 bits (60), Expect = 4.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 1 MFEISEGGFLDIDVRITGPDGNIIY-QGERESSGKY--TFSAHMSGVYT 46
+I E D+ +T P G + + + F GV+T
Sbjct: 22 NLKIPEINSSDMSAHVTSPSGRVTEAEIVPMGKNSHCVRFVPQEMGVHT 70
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating
mechanism, electron oxidoreductase; 1.46A {Rhodobacter
sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A
1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Length = 333
Score = 29.1 bits (65), Expect = 3.1
Identities = 18/120 (15%), Positives = 34/120 (28%), Gaps = 15/120 (12%)
Query: 32 SGKYTFSAHMSGVYTY-CFSNQMSTMTPKVVMFNME-VLSTQPSEDDKGEKGLMFEISEG 89
F A +G + Y C M P V+ M + P + K +G
Sbjct: 112 KVVLRFKATRAGAFVYHCAPGGP--MIPWHVVSGMAGCIMVLPRDGLKDHEGKPVRYDTV 169
Query: 90 GFLDIDVRITGPDGNIIYQGERESSGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEV 149
++ + + + + + M T+ P ++FN V
Sbjct: 170 YYIG--------ESDHYIPKDEDGTYMRFSDPSEGYEDMVAV---MDTLIPSHIVFNGAV 218
>3qoy_A 50S ribosomal protein L1; beta-alpha-beta, structural constituent
of ribosome, rRNA BI regulation of translation,
translation, ribosomal RNA; 2.10A {Aquifex aeolicus}
Length = 242
Score = 28.5 bits (64), Expect = 3.4
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 78 GEKGLMFEISEGGFLDIDVRITGPD 102
G L+ +I + + D DV I P+
Sbjct: 99 GGDELINKILKEEWTDFDVAIATPE 123
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors,
dimerization, glutamic acid BIN structural genomics,
structural genomics consortium; HET: Z99; 2.80A {Homo
sapiens} PDB: 2e4z_A*
Length = 481
Score = 27.9 bits (62), Expect = 7.8
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Query: 221 SEDDKGEKGEPNLQDMIRQLGE-----SLTSVKHEQEYMSVRDRIHRSINESTNSRVV 273
SE GEKG + + ++ G S+ + ++ DRI + + ++ NSR V
Sbjct: 194 SEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 8.4
Identities = 6/37 (16%), Positives = 16/37 (43%), Gaps = 5/37 (13%)
Query: 227 EKGEPNLQDMIRQLGESLTSVK-----HEQEYMSVRD 258
EK + +L++ ++ E + K ++ + D
Sbjct: 114 EKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
>2k7p_A Filamin-A; IG-like, ABP-280, actin binding protein, acetylation,
actin-binding, cytoplasm, cytoskeleton, disease
mutation, phosphoprotein; NMR {Homo sapiens}
Length = 188
Score = 27.1 bits (59), Expect = 8.5
Identities = 16/131 (12%), Positives = 42/131 (32%), Gaps = 13/131 (9%)
Query: 11 DIDVRITGPDGNIIY-QGERESSGKYT--FSAHMSGVYT--YCFSNQMSTMTPKVVMFNM 65
+I + P G + G T ++ +G++ + N +P +
Sbjct: 35 EITGEVRMPSGKVAQPTITDNKDGTVTVRYAPSEAGLHEMDIRYDNMHIPGSPLQFYVDY 94
Query: 66 EVLSTQPSEDDKGEKGLMFEISE-------GGFLDIDVRITGPDGNIIYQGE-RESSGKY 117
+ G++ + + G + + I GP I + ++ +
Sbjct: 95 VNCGHVTAYGPGLTHGVVNKPATFTVNTKDAGEGGLSLAIEGPSKAEISCTDNQDGTCSV 154
Query: 118 TFSAHMSGVYT 128
++ + G Y+
Sbjct: 155 SYLPVLPGDYS 165
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0601 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,018,972
Number of extensions: 345048
Number of successful extensions: 806
Number of sequences better than 10.0: 1
Number of HSP's gapped: 800
Number of HSP's successfully gapped: 28
Length of query: 413
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 317
Effective length of database: 4,021,377
Effective search space: 1274776509
Effective search space used: 1274776509
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)