RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13839
         (413 letters)



>d1olma2 b.132.1.1 (A:275-393) Supernatant protein factor (SPF),
           C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 119

 Score = 33.8 bits (77), Expect = 0.010
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 36  TFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDK 77
           T +    G+Y   F N  S +  K V F +EVL    + ++K
Sbjct: 78  TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKASEEK 119



 Score = 33.8 bits (77), Expect = 0.010
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 118 TFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDK 159
           T +    G+Y   F N  S +  K V F +EVL    + ++K
Sbjct: 78  TLTCSDPGIYVLRFDNTYSFIHAKKVNFTVEVLLPDKASEEK 119


>d1n0ua5 d.58.11.1 (A:726-842) Elongation factor 2 (eEF-2) {Baker's
           yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 117

 Score = 29.2 bits (65), Expect = 0.31
 Identities = 11/79 (13%), Positives = 30/79 (37%), Gaps = 2/79 (2%)

Query: 103 GNIIYQGERESSGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDKGEK 162
           G ++ + +R  +  +T  A++    ++ F+ ++   T       M          D  + 
Sbjct: 27  GQVVSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTLGSDPLDP 86

Query: 163 GNRYAKNISA--KPKGLNP 179
            ++  + + A  K  G+  
Sbjct: 87  TSKAGEIVLAARKRHGMKE 105


>d2gnxa1 a.246.3.1 (A:123-294) Hypothetical protein BC048403 {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 172

 Score = 27.1 bits (60), Expect = 3.1
 Identities = 11/45 (24%), Positives = 20/45 (44%)

Query: 275 WSFFEAVVLVNHAKDKLHSKPTNSSSIKHLKKLLNHAKDKLHSKP 319
           W F  ++V +++A  KL S        +  KK L   + +   +P
Sbjct: 85  WKFLPSLVTLHNAHTKLQSWGQTFEKQRETKKHLFGGQSQKAVQP 129


>d1o91a_ b.22.1.1 (A:) Collagen NC1 trimerisation domain {Mouse (Mus
           musculus), isoform VIII [TaxId: 10090]}
          Length = 131

 Score = 25.8 bits (56), Expect = 5.2
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 31  SSGKYTFSAHMSGVYTYCFSNQMSTMTPKVVMFNMEVLSTQPSEDDKGEKGLMFEISEGG 90
            +G +T    + GVY + +          V +F          ++ K         S   
Sbjct: 36  QTGIFT--CEVPGVYYFAYHVHCKGGNVWVALFKNNEPMMYTYDEYKKGFLDQASGSAVL 93

Query: 91  FLD----IDVRITGPDGNIIYQGERESSGKYTFSAHM 123
            L     + +++       +Y G+   S   +FS ++
Sbjct: 94  LLRPGDQVFLQMPSEQAAGLYAGQYVHS---SFSGYL 127


>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score = 25.9 bits (57), Expect = 8.8
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 147 MEVLSTQPSEDDKGEKGNRYAKNISAKPK 175
           +EVL  +P E D GEKG    K    + K
Sbjct: 39  VEVLVNEPYEKDDGEKGQYTHKIYHLQSK 67


>d1k7ha_ c.76.1.1 (A:) Alkaline phosphatase {Northern shrimp
           (Pandalus borealis) [TaxId: 6703]}
          Length = 476

 Score = 26.3 bits (57), Expect = 9.2
 Identities = 15/115 (13%), Positives = 36/115 (31%), Gaps = 1/115 (0%)

Query: 182 DKLYSKPTKFVIRTADFLLFCPPSFDLGMIKLLFLSTQPSEDDKGEKGEPNLQDMIRQLG 241
           DK     T   +   D LL    +    ++ L   +   +   +  + +P L +M +   
Sbjct: 236 DKASQGATASYVWNRDDLLAVDIANTDYLMGLFSYTHLDTVLTRDAEMDPTLPEMTKV-A 294

Query: 242 ESLTSVKHEQEYMSVRDRIHRSINESTNSRVVWWSFFEAVVLVNHAKDKLHSKPT 296
             + +      ++ V       ++ +   R       +    V+ A      + T
Sbjct: 295 IEMLTKDENGFFLLVEGGRIDHMHHANQIRQSLAETLDMEEAVSMALSMTDPEET 349


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,468,048
Number of extensions: 64925
Number of successful extensions: 223
Number of sequences better than 10.0: 1
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 14
Length of query: 413
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 325
Effective length of database: 1,199,356
Effective search space: 389790700
Effective search space used: 389790700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (24.8 bits)