BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13845
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
pdb|1MHD|B Chain B, Crystal Structure Of A Smad Mh1 Domain Bound To Dna
Length = 132
Score = 170 bits (430), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 102/135 (75%), Gaps = 6/135 (4%)
Query: 59 MTSLFPFTPPIVKKLLGWKKGDG---EDKYSEKAXXXXXXXXXXXNGLDELEKAITTQDP 115
M+S+ PFTPPIVK+LLGWKKG+ E+K+ EKA LDELEKAITTQ+
Sbjct: 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNV 60
Query: 116 NTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKR 175
NTKC+TIP R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+
Sbjct: 61 NTKCITIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKK 117
Query: 176 DQVCVNPYHYQRIHT 190
D+VCVNPYHYQR+ T
Sbjct: 118 DEVCVNPYHYQRVET 132
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHY 274
R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+D+VCVNPYHY
Sbjct: 69 RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHY 127
Query: 275 QRI 277
QR+
Sbjct: 128 QRV 130
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
pdb|1OZJ|B Chain B, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A
Resolution
Length = 144
Score = 169 bits (429), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/135 (60%), Positives = 102/135 (75%), Gaps = 6/135 (4%)
Query: 59 MTSLFPFTPPIVKKLLGWKKGDG---EDKYSEKAXXXXXXXXXXXNGLDELEKAITTQDP 115
M+S+ PFTPPIVK+LLGWKKG+ E+K+ EKA LDELEKAITTQ+
Sbjct: 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNV 60
Query: 116 NTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKR 175
NTKC+TIP R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+
Sbjct: 61 NTKCITIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKK 117
Query: 176 DQVCVNPYHYQRIHT 190
D+VCVNPYHYQR+ T
Sbjct: 118 DEVCVNPYHYQRVET 132
Score = 98.6 bits (244), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHY 274
R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+D+VCVNPYHY
Sbjct: 69 RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHY 127
Query: 275 QRI 277
QR+
Sbjct: 128 QRV 130
>pdb|1MK2|A Chain A, Smad3 Sbd Complex
Length = 206
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 66/74 (89%)
Query: 304 DTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNR 363
D QPV YCEP FWCSISYYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNR
Sbjct: 1 DLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNR 60
Query: 364 NHVVEQIRRHIGKG 377
N VE RRHIG+G
Sbjct: 61 NAAVELTRRHIGRG 74
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 77 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 117
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2
Length = 227
Score = 137 bits (346), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 71/94 (75%), Gaps = 3/94 (3%)
Query: 287 DATDALSLSPSPAIPAG---DTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDG 343
D LSP+ P D QPV Y EP FWCSI+YYELN RVGETFHASQPS++VDG
Sbjct: 2 DTGSPAELSPTTLSPVNHSLDLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDG 61
Query: 344 FTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKG 377
FTDPSNSERFCLGLLSNVNRN VE RRHIG+G
Sbjct: 62 FTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRG 95
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 98 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 138
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
pdb|1DEV|C Chain C, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad-
Binding Domain Of Sara
Length = 196
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 67/81 (82%)
Query: 304 DTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNR 363
D QPV Y EP FWCSI+YYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNR
Sbjct: 2 DLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNR 61
Query: 364 NHVVEQIRRHIGKGPSISVDG 384
N VE RRHIG+G + G
Sbjct: 62 NATVEMTRRHIGRGVRLYYIG 82
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 78 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 118
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX
pdb|3KMP|B Chain B, Crystal Structure Of Smad1-Mh1DNA COMPLEX
Length = 124
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 88/127 (69%), Gaps = 4/127 (3%)
Query: 65 FTPPIVKKLLGWKKGDGEDKYSEKAXXXXXXXXXXXNG-LDELEKAITTQDPNTKCVTIP 123
FT P VK+LLGWK+GD E+K++EKA G ++ELEKA++ + CVTIP
Sbjct: 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIP 60
Query: 124 SARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPY 183
R+ G +S+R KGLPHVIYCR+WRWP LQSH+EL+ ++ C F F K+ +VC+NPY
Sbjct: 61 --RSLDGRLQVSHR-KGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPY 117
Query: 184 HYQRIHT 190
HY+R+ +
Sbjct: 118 HYKRVES 124
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Query: 209 NLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVC 268
N R+ G +S+R KGLPHVIYCR+WRWP LQSH+EL+ ++ C F F K+ +VC
Sbjct: 55 NCVTIPRSLDGRLQVSHR-KGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVC 113
Query: 269 VNPYHYQRI 277
+NPYHY+R+
Sbjct: 114 INPYHYKRV 122
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
pdb|1U7F|C Chain C, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 198
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/66 (86%), Positives = 60/66 (90%)
Query: 312 EPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIR 371
EP FWCSISYYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNRN VE R
Sbjct: 1 EPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTR 60
Query: 372 RHIGKG 377
RHIG+G
Sbjct: 61 RHIGRG 66
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 69 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 109
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
pdb|1U7V|C Chain C, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 198
Score = 125 bits (313), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 312 EPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIR 371
EP FWCSI+YYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNRN VE R
Sbjct: 1 EPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTR 60
Query: 372 RHIGKGPSISVDG 384
RHIG+G + G
Sbjct: 61 RHIGRGVRLYYIG 73
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 69 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 109
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3
Length = 197
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 59/65 (90%)
Query: 313 PVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRR 372
P FWCSISYYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNRN VE RR
Sbjct: 1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRR 60
Query: 373 HIGKG 377
HIG+G
Sbjct: 61 HIGRG 65
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 68 LYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 108
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|B Chain B, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|C Chain C, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
pdb|1KHU|D Chain D, Smad1 Crystal Structure Reveals The Details Of Bmp
Signaling Pathway
Length = 218
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 64/86 (74%), Gaps = 5/86 (5%)
Query: 297 SPAIPA----GDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSE- 351
+P +P+ GD Q V Y EP WCSI YYELN RVGE FHAS S+ VDGFTDPSN++
Sbjct: 1 APPLPSEINRGDVQAVAYEEPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNKN 60
Query: 352 RFCLGLLSNVNRNHVVEQIRRHIGKG 377
RFCLGLLSNVNRN +E RRHIGKG
Sbjct: 61 RFCLGLLSNVNRNSTIENTRRHIGKG 86
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 32/40 (80%), Positives = 36/40 (90%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIP 42
LYY+GGEV+AECLSDSSIFVQS NCN +G+HP TVCKIP
Sbjct: 89 LYYVGGEVYAECLSDSSIFVQSRNCNYHHGFHPTTVCKIP 128
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3GMJ|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 245
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
Query: 283 SEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVD 342
SEDG++ + GD V Y EP FW SI+YYELN RVGE FH + S+ VD
Sbjct: 18 SEDGNSNNPNDGGQLLDAQMGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVD 77
Query: 343 GFTDPS-NSERFCLGLLSNVNRNHVVEQIRRHIGKG 377
GFT+PS NS+R CLG LSNVNRN +E RRHIGKG
Sbjct: 78 GFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKG 113
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 38/41 (92%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYY+ GEV+AECLSDS+IFVQS NCN ++G+HP+TVCKIPP
Sbjct: 116 LYYVTGEVYAECLSDSAIFVQSRNCNYQHGFHPSTVCKIPP 156
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|B Chain B, Crystal Structure Of Mad Mh2 Domain
pdb|3DIT|C Chain C, Crystal Structure Of Mad Mh2 Domain
Length = 188
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 314 VFWCSISYYELNTRVGETFHASQPSISVDGFTDPS-NSERFCLGLLSNVNRNHVVEQIRR 372
FW SI+YYELN RVGE FH + S+ VDGFT+PS NS+R CLG LSNVNRN +E RR
Sbjct: 1 AFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRR 60
Query: 373 HIGKG 377
HIGKG
Sbjct: 61 HIGKG 65
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 31/41 (75%), Positives = 37/41 (90%)
Query: 3 LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYY+ GEV+AECLSDS+IFVQS NCN +G+HP+TVCKIPP
Sbjct: 68 LYYVTGEVYAECLSDSAIFVQSRNCNYHHGFHPSTVCKIPP 108
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex
pdb|1MR1|B Chain B, Crystal Structure Of A Smad4-Ski Complex
Length = 235
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 3 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 62
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 63 RLHIGKGVQLECKGEGD 79
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 78 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 114
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal
Domain
Length = 234
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 62 RLHIGKGVQLECKGEGD 78
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 77 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 113
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4
Heterotrimeric Complex
Length = 239
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 7 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 66
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 67 RLHIGKGVQLECKGEGD 83
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 82 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 118
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4
Heterotrimeric Complex
Length = 236
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 7 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 66
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 67 RLHIGKGVQLECKGEGD 83
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 82 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 118
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|B Chain B, Crystal Structure Analysis Of The Smad4 Active Fragment
pdb|1DD1|C Chain C, Crystal Structure Analysis Of The Smad4 Active Fragment
Length = 268
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 36 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 95
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 96 RLHIGKGVQLECKGEGD 112
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 111 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 147
>pdb|1G88|A Chain A, S4afl3arg515 Mutant
pdb|1G88|B Chain B, S4afl3arg515 Mutant
pdb|1G88|C Chain C, S4afl3arg515 Mutant
Length = 268
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%), Gaps = 2/77 (2%)
Query: 313 PVFWCSISYYELNTRVGETFH--ASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF +S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 36 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 95
Query: 371 RRHIGKGPSISVDGFTD 387
R HIGKG + G D
Sbjct: 96 RLHIGKGVQLECKGEGD 112
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 8 GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 111 GDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 147
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|B Chain B, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|C Chain C, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
pdb|3QSV|D Chain D, Structural Basis For Dna Recognition By Constitutive Smad4
Mh1 Dimers
Length = 132
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 69/126 (54%), Gaps = 6/126 (4%)
Query: 69 IVKKLLGWKKGDGEDKYSEKAXXXXXXXXXXXNGLD-ELEKAITTQDPN-TKCVTIPSAR 126
IV L+ ++G + ++++A L AITT + +KCVTI R
Sbjct: 11 IVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTI--QR 68
Query: 127 TDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQ 186
T G ++ R KG PHVIY RLWRWP L NEL+ + C + F LK D VCVNPYHY+
Sbjct: 69 TLDGRLQVAGR-KGFPHVIYARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNPYHYE 126
Query: 187 RIHTQG 192
R+ + G
Sbjct: 127 RVVSPG 132
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 42/63 (66%), Gaps = 2/63 (3%)
Query: 215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHY 274
RT G ++ R KG PHVIY RLWRWP L NEL+ + C + F LK D VCVNPYHY
Sbjct: 68 RTLDGRLQVAGR-KGFPHVIYARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNPYHY 125
Query: 275 QRI 277
+R+
Sbjct: 126 ERV 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,310,140
Number of Sequences: 62578
Number of extensions: 557009
Number of successful extensions: 934
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 861
Number of HSP's gapped (non-prelim): 53
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)