Query psy13845
Match_columns 430
No_of_seqs 249 out of 435
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:53:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13845.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13845hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozj_A SMAD 3; MAD homology do 100.0 2.7E-60 9.1E-65 420.8 4.8 140 59-201 1-143 (144)
2 3qsv_A SMAD4, mothers against 100.0 1.8E-53 6E-58 373.0 5.0 126 63-192 5-132 (132)
3 3kmp_A SMAD1-MH1; protein-DNA 100.0 1.6E-53 5.5E-58 370.5 4.6 123 65-190 1-124 (124)
4 3gmj_D Protein mothers against 99.9 8.1E-28 2.8E-32 230.7 3.4 125 273-401 7-141 (245)
5 1khx_A SMAD2; TGF-beta signali 99.9 1.5E-24 5E-29 206.4 4.8 97 304-401 22-123 (227)
6 1dd1_A SMAD4; B-sheet sandwich 99.9 1.7E-23 5.7E-28 203.2 4.4 93 308-400 31-130 (268)
7 1ygs_A SMAD4; tumor suppressor 99.9 1.6E-23 5.4E-28 200.4 1.2 90 312-401 1-97 (234)
8 3gmj_D Protein mothers against 99.7 9.3E-19 3.2E-23 168.0 4.2 74 351-428 49-123 (245)
9 1khx_A SMAD2; TGF-beta signali 99.7 9.6E-18 3.3E-22 159.6 5.1 74 351-428 32-105 (227)
10 1ygs_A SMAD4; tumor suppressor 99.7 8.2E-18 2.8E-22 160.9 4.5 76 351-428 3-79 (234)
11 1dd1_A SMAD4; B-sheet sandwich 99.7 2.2E-17 7.4E-22 160.4 5.7 76 351-428 37-113 (268)
12 1ozj_A SMAD 3; MAD homology do 99.7 2.1E-18 7.3E-23 152.8 -1.5 62 214-276 68-129 (144)
13 3qsv_A SMAD4, mothers against 99.6 3.5E-17 1.2E-21 143.3 -1.3 62 214-277 67-128 (132)
14 3kmp_A SMAD1-MH1; protein-DNA 99.5 2.6E-16 8.7E-21 136.9 -1.2 61 215-276 61-121 (124)
15 1gff_3 Bacteriophage G4 capsid 37.1 14 0.00049 22.7 1.4 13 416-428 12-24 (26)
16 2rnn_A E3 SUMO-protein ligase 30.5 77 0.0026 26.7 5.3 46 68-113 62-114 (114)
17 4h4n_A Hypothetical protein BA 25.3 26 0.00089 26.1 1.3 14 37-50 9-22 (67)
18 2l69_A Rossmann 2X3 fold prote 20.1 37 0.0013 27.9 1.4 42 81-123 59-110 (134)
19 1m06_J J protein, small core p 20.1 15 0.00052 22.7 -0.7 12 417-428 12-23 (26)
No 1
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=100.00 E-value=2.7e-60 Score=420.79 Aligned_cols=140 Identities=67% Similarity=1.194 Sum_probs=119.8
Q ss_pred ccccCCCChHHHHHHhhcccCC---CCcchhHHHHHHHHHHhhccCCHHHHHHHHhcCCCCccceEecCCCCCCCCcccC
Q psy13845 59 MTSLFPFTPPIVKKLLGWKKGD---GEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLS 135 (430)
Q Consensus 59 ~~~~~~~~~~~v~~ll~~~~g~---~~~~~~~ka~~~l~Kklk~~~~le~L~~Av~~~~~~t~Cv~i~~~r~~dgrl~~~ 135 (430)
|++||+|++++||||||||||+ +||+|++|||++|+|||||+++||+|++||++++.+|+||+|| |++||||||+
T Consensus 1 ~~~~~~~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~~~~Le~L~~AV~s~g~~t~CV~ip--rsldgRlqv~ 78 (144)
T 1ozj_A 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIP--RSLDGRLQVS 78 (144)
T ss_dssp ------CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCCTTSCCCEEE--CCTTSCEEET
T ss_pred CCccccCCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcccccHHHHHHHHhCCCCCCCeEEcc--cCCCcccccc
Confidence 6789999999999999999766 8999999999999999998679999999999998789999999 9999999999
Q ss_pred CCCCCCCceEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceeecCccccccccc
Q psy13845 136 NRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVERE 201 (430)
Q Consensus 136 ~~~k~~Phv~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~p~~pp~~v~~~ 201 (430)
+| |++|||||||||||||||+++|||++++|+|+|+++.++||||||||+||+.|++|||+|||+
T Consensus 79 ~r-k~~PHVi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPYHY~Rv~~p~~pPvlvp~~ 143 (144)
T 1ozj_A 79 HR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRH 143 (144)
T ss_dssp TE-EECHHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEECCC-----------
T ss_pred Cc-cCCCeeEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcchhhhhccCCCCCccCCCC
Confidence 99 999999999999999999999999999999999999999999999999999999999999984
No 2
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=100.00 E-value=1.8e-53 Score=372.96 Aligned_cols=126 Identities=48% Similarity=0.894 Sum_probs=119.1
Q ss_pred CCCChHHHHHHhhcccCCCCcchhHHHHHHHHHHhhcc-CCHHHHHHHHhcCC-CCccceEecCCCCCCCCcccCCCCCC
Q psy13845 63 FPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKS-NGLDELEKAITTQD-PNTKCVTIPSARTDKGSTDLSNRSKG 140 (430)
Q Consensus 63 ~~~~~~~v~~ll~~~~g~~~~~~~~ka~~~l~Kklk~~-~~le~L~~Av~~~~-~~t~Cv~i~~~r~~dgrl~~~~~~k~ 140 (430)
..|++++||+||+||||+|||+|++||+++|||||||+ ++||+|++||++++ .+|+||+|| |++||||||+++ |+
T Consensus 5 ~~~~~~~v~~Ll~~k~g~e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ip--r~ldgrlqv~~r-k~ 81 (132)
T 3qsv_A 5 NDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQ--RTLDGRLQVAGR-KG 81 (132)
T ss_dssp SSCHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEE--CCTTSCEEETTE-EE
T ss_pred ccCcchhhhhhhccccCchhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEee--cccccccccccc-cc
Confidence 35789999999999999999999999999999999985 58999999999995 899999999 999999999999 99
Q ss_pred CCceEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceeecC
Q psy13845 141 LPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQG 192 (430)
Q Consensus 141 ~Phv~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~p~ 192 (430)
+||||||||||||||++ +|||++++|+++|+.++++||||||||+||++|+
T Consensus 82 ~PHvi~cRlwRWPdL~s-~ELk~l~~C~~~~~~~~~~VC~NPyHY~Rv~~p~ 132 (132)
T 3qsv_A 82 FPHVIYARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNPYHYERVVSPG 132 (132)
T ss_dssp CHHHHHHHHHTCTTCCT-TCEEECTTCTTCGGGCCSEEECCGGGEEECCC--
T ss_pred CcceeEEEEecCCccCH-hhcccCCCCCCCccCCCCeEEeCCcCcccccCCC
Confidence 99999999999999976 9999999999999999999999999999999884
No 3
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=100.00 E-value=1.6e-53 Score=370.54 Aligned_cols=123 Identities=58% Similarity=1.144 Sum_probs=119.7
Q ss_pred CChHHHHHHhhcccCCCCcchhHHHHHHHHHHhhc-cCCHHHHHHHHhcCCCCccceEecCCCCCCCCcccCCCCCCCCc
Q psy13845 65 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKK-SNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPH 143 (430)
Q Consensus 65 ~~~~~v~~ll~~~~g~~~~~~~~ka~~~l~Kklk~-~~~le~L~~Av~~~~~~t~Cv~i~~~r~~dgrl~~~~~~k~~Ph 143 (430)
||+|+||+||+||||++||+|++|||++|+||||| +++||+|++||++++.+|+||+|| |++||||||+++ |++||
T Consensus 1 ~~~~~v~~ll~~~~~~~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~~~~s~CV~ip--r~ldgrlqv~~~-k~~Ph 77 (124)
T 3kmp_A 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIP--RSLDGRLQVSHR-KGLPH 77 (124)
T ss_dssp CCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCTTSCCCCCEEE--CCSSSCEEETTE-EECHH
T ss_pred CCchhhhHHhhhhcCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHhCCCCCCCeEEec--cccccccccCCc-ccCce
Confidence 68999999999999999999999999999999998 499999999999999999999999 999999999999 99999
Q ss_pred eEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceee
Q psy13845 144 VIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHT 190 (430)
Q Consensus 144 v~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~ 190 (430)
|||||||||||||+++|||+++.|+++|+++.++||||||||+||++
T Consensus 78 vi~crl~RWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHY~Rve~ 124 (124)
T 3kmp_A 78 VIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKRVES 124 (124)
T ss_dssp HHHHHHHTCTTCCCGGGEEECTTCSSCGGGCCSEEECCGGGEEECCC
T ss_pred eeEEEeecCCcCCCHHHcccCCCCCCCccCCCCeEEeCCccchhhcC
Confidence 99999999999999999999999999999999999999999999974
No 4
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=99.94 E-value=8.1e-28 Score=230.72 Aligned_cols=125 Identities=44% Similarity=0.699 Sum_probs=82.8
Q ss_pred CCCCCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCccccCCCccccccccccccccccccccCCCccccCCccCCC
Q psy13845 273 HYQRIHGGYMSEDGDATDA----LSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPS 348 (430)
Q Consensus 273 hyesppP~y~s~~~~~~~~----~~~~p~~~~~~~~~~pv~y~eP~~WCSIaY~El~~rVGe~F~vs~psV~VDGftDPS 348 (430)
..++|||+|++++.+..+. ..+.|.. .++.+||.|++|++||+|+|||+++||||+|+++.++|+||||+||+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~y~ep~~WcsIaYyEln~RVGe~F~a~~~sv~IDGf~dps 83 (245)
T 3gmj_D 7 LAGTPPPAYSPSEDGNSNNPNDGGQLLDAQ---MGDVAQVSYSEPAFWASIAYYELNCRVGEVFHCNNNSVIVDGFTNPS 83 (245)
T ss_dssp -------------------------------------------CCSCSEEEEEEETTEEEEEEEEECSSEEEEESSCCCC
T ss_pred CCCCCCCCcCCCCcCcccCCCCCccccCCC---CCccccccccCCCceeEEEEeecCceeccceeecCCeEEEeCCcCCC
Confidence 4478999998876543332 2222221 24789999999999999999999999999999999999999999999
Q ss_pred CC-cccccccccCcccchhHhhhhccccCCceeeeecccCC-----CCCCceEeecccC
Q psy13845 349 NS-ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDP-----SNSERFCLGLLSN 401 (430)
Q Consensus 349 ~~-~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp-----~~~~~fcLg~l~n 401 (430)
++ +|||||+|+|++|+..+|++|+|||+||+|+++| +++ |+...|+++--.|
T Consensus 84 ~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~-G~V~~~nlS~~~IFVqS~~~n 141 (245)
T 3gmj_D 84 NNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVT-GEVYAECLSDSAIFVQSRNCN 141 (245)
T ss_dssp TTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEET-TEEEEEECSSSCEEEEEHHHH
T ss_pred CCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEEC-CEEEEEecCCCcEEECCCccc
Confidence 87 9999999999999999999999999999999998 554 7788888876543
No 5
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=99.89 E-value=1.5e-24 Score=206.39 Aligned_cols=97 Identities=68% Similarity=1.094 Sum_probs=88.4
Q ss_pred CCCCccccCCCccccccccccccccccccccCCCccccCCccCCCCCcccccccccCcccchhHhhhhccccCCceeeee
Q psy13845 304 DTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVD 383 (430)
Q Consensus 304 ~~~pv~y~eP~~WCSIaY~El~~rVGe~F~vs~psV~VDGftDPS~~~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vd 383 (430)
+.+|++|++|++||+|+|||+++||||+|+++.++|+||||+||++++|||||.++|++|+..+|++|+|||+||+|+++
T Consensus 22 ~~~~v~~~~~~~WcsIaYyE~n~rVGe~f~~~~~~v~IDGf~dps~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~ 101 (227)
T 1khx_A 22 DLQPVTYSEPAFWCSIAYYELNQRVGETFHASQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYI 101 (227)
T ss_dssp ---CCCCCCCSCSEEEEEEETTEECSCCEEECSSEEEEESSCCSSCTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEE
T ss_pred CCcccccCCCCceEEEEEEecCceeCCeEEecCCEEEEeCccCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEE
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC-----CCCCceEeecccC
Q psy13845 384 GFTDP-----SNSERFCLGLLSN 401 (430)
Q Consensus 384 GftDp-----~~~~~fcLg~l~n 401 (430)
| +|+ |+...|.++--.|
T Consensus 102 ~-G~V~~~nlS~~~IFVqS~~~n 123 (227)
T 1khx_A 102 G-GEVFAECLSDSAIFVQSPNCN 123 (227)
T ss_dssp T-TEEEEEECSSSCEEEECHHHH
T ss_pred C-CEEEEEEcCCCCEEEeCCCcc
Confidence 8 565 7788888876644
No 6
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=99.87 E-value=1.7e-23 Score=203.18 Aligned_cols=93 Identities=44% Similarity=0.828 Sum_probs=85.3
Q ss_pred ccccCCCcccccccccccccccccccc--CCCccccCCccCCCCCcccccccccCcccchhHhhhhccccCCceeeeecc
Q psy13845 308 VMYCEPVFWCSISYYELNTRVGETFHA--SQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGF 385 (430)
Q Consensus 308 v~y~eP~~WCSIaY~El~~rVGe~F~v--s~psV~VDGftDPS~~~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGf 385 (430)
.+|.+|++||+|+|||+++||||+|++ +.++|+||||+||++++|||||.++|++|+..+|++|+|||+||+|+++|.
T Consensus 31 ~~~~~~~~WCsIaYyEln~rVGe~f~~~~~~~~v~VDGf~dps~~~RfCLg~lsN~~R~~~ve~~R~~IG~GV~L~~~~~ 110 (268)
T 1dd1_A 31 SNHPAPEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGE 110 (268)
T ss_dssp CCSCCCSEEEEEEEEETTEECSCCEEEETTCSEEEEESCCCCCCTTEEECSSCCCTTCCHHHHHHHTTTTTCEEEEEETT
T ss_pred ccCCCCCceEEEEEEecCceecceEEecCCCCEEEEecCCCCCCCCeeecccccCCCccHHHHHHHHhhcCceEEEEecC
Confidence 346799999999999999999999999 889999999999999999999999999999999999999999999999986
Q ss_pred cCC-----CCCCceEeeccc
Q psy13845 386 TDP-----SNSERFCLGLLS 400 (430)
Q Consensus 386 tDp-----~~~~~fcLg~l~ 400 (430)
+|+ |+...|..+--.
T Consensus 111 G~Vwl~nlS~~~IFVqS~~l 130 (268)
T 1dd1_A 111 GDVWVRCLSDHAVFVQSYYL 130 (268)
T ss_dssp TEEEEEECSSSCEEEECHHH
T ss_pred CcEEEEecCCCCEEEcCCCc
Confidence 665 777888876554
No 7
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=99.86 E-value=1.6e-23 Score=200.40 Aligned_cols=90 Identities=46% Similarity=0.895 Sum_probs=83.6
Q ss_pred CCCcccccccccccccccccccc--CCCccccCCccCCCCCcccccccccCcccchhHhhhhccccCCceeeeecccCC-
Q psy13845 312 EPVFWCSISYYELNTRVGETFHA--SQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDP- 388 (430)
Q Consensus 312 eP~~WCSIaY~El~~rVGe~F~v--s~psV~VDGftDPS~~~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp- 388 (430)
+|++||+|+|||+++||||+|++ +.++|+||||+||++++|||||.++|++|+..+|++|+|||+||+|+++|.+|+
T Consensus 1 ~p~~WcsIaYyEl~~rVGe~f~~~~~~~~v~IDG~~dps~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~Vw 80 (234)
T 1ygs_A 1 APEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVW 80 (234)
T ss_dssp CCSEEEEEEEEETTEEEEEEEEEETTCSEEEEESSCCTTCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEEE
T ss_pred CCCcceEEEEEecCceecceEEecCCCCEEEEecCcCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcEE
Confidence 47899999999999999999999 889999999999999999999999999999999999999999999999986665
Q ss_pred ----CCCCceEeecccC
Q psy13845 389 ----SNSERFCLGLLSN 401 (430)
Q Consensus 389 ----~~~~~fcLg~l~n 401 (430)
|+...|..+--.|
T Consensus 81 ~~n~S~~~IFVqS~~ln 97 (234)
T 1ygs_A 81 VRCLSDHAVFVQSYYLD 97 (234)
T ss_dssp EEECSSSCEEEECHHHH
T ss_pred EEecCCCCEEEcCCCcc
Confidence 7888898877654
No 8
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster}
Probab=99.73 E-value=9.3e-19 Score=168.01 Aligned_cols=74 Identities=45% Similarity=0.589 Sum_probs=66.5
Q ss_pred cccccccccCcccchhHhhhhccccCCceeeeecccCCCCC-CceEeecccCCCCchhHHHhhhccCCceEEEeecccc
Q psy13845 351 ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNS-ERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEK 428 (430)
Q Consensus 351 ~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp~~~-~~fcLg~l~n~~r~~~v~~tR~~iG~Gv~L~y~~g~~ 428 (430)
+.||..+ |++.+++++|.|+++ ..++++|||+||+++ +|||||+|+|++|+++||+||+|||+||+|+|++||.
T Consensus 49 ~~WcsIa-YyEln~RVGe~F~a~---~~sv~IDGf~dps~~~~RfcLg~lsNv~R~~~ve~tR~~IG~GV~L~~~~G~V 123 (245)
T 3gmj_D 49 AFWASIA-YYELNCRVGEVFHCN---NNSVIVDGFTNPSNNSDRCCLGQLSNVNRNSTIENTRRHIGKGVHLYYVTGEV 123 (245)
T ss_dssp SCSEEEE-EEETTEEEEEEEEEC---SSEEEEESSCCCCTTTSEEEGGGCCCTTCCHHHHHHHHHHTTCEEEEEETTEE
T ss_pred CceeEEE-EeecCceeccceeec---CCeEEEeCCcCCCCCCCceeecCccCCCCcHHHHHHHHHHhcCeEEEEECCEE
Confidence 4688866 556668999998874 689999999999987 9999999999999999999999999999999999985
No 9
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A
Probab=99.69 E-value=9.6e-18 Score=159.60 Aligned_cols=74 Identities=54% Similarity=0.791 Sum_probs=65.9
Q ss_pred cccccccccCcccchhHhhhhccccCCceeeeecccCCCCCCceEeecccCCCCchhHHHhhhccCCceEEEeecccc
Q psy13845 351 ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEK 428 (430)
Q Consensus 351 ~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp~~~~~fcLg~l~n~~r~~~v~~tR~~iG~Gv~L~y~~g~~ 428 (430)
+.||..+ |++.+++++|.+.+ +..+++||||+||++++|||||.|+|++|++++|+||+|||+||+|+|++||.
T Consensus 32 ~~WcsIa-YyE~n~rVGe~f~~---~~~~v~IDGf~dps~~~rfcLg~lsN~~R~~~v~~~R~~IG~GV~L~~~~G~V 105 (227)
T 1khx_A 32 AFWCSIA-YYELNQRVGETFHA---SQPSLTVDGFTDPSNSERFCLGLLSNVNRNATVEMTRRHIGRGVRLYYIGGEV 105 (227)
T ss_dssp SCSEEEE-EEETTEECSCCEEE---CSSEEEEESSCCSSCTTEEEGGGCCCTTCCHHHHHHHTTTTTCEEEEEETTEE
T ss_pred CceEEEE-EEecCceeCCeEEe---cCCEEEEeCccCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEECCEE
Confidence 3588865 55666899998875 36899999999999999999999999999999999999999999999999985
No 10
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B*
Probab=99.69 E-value=8.2e-18 Score=160.92 Aligned_cols=76 Identities=38% Similarity=0.603 Sum_probs=66.3
Q ss_pred cccccccccCcccchhHhhhhccccCCceeeeecccCCCCCCceEeecccCCCCchhHHHhhhccCCceEEEeec-ccc
Q psy13845 351 ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVA-KEK 428 (430)
Q Consensus 351 ~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp~~~~~fcLg~l~n~~r~~~v~~tR~~iG~Gv~L~y~~-g~~ 428 (430)
+.||..+ |++.+++++|.+... ++..++++|||+||++++|||||+|+|++|++++|+||+|||+||+|+|++ ||.
T Consensus 3 ~~WcsIa-YyEl~~rVGe~f~~~-~~~~~v~IDG~~dps~~~rfcLg~lsN~~R~~~~e~~R~~IG~GV~L~~~~~G~V 79 (234)
T 1ygs_A 3 EYWCSIA-YFEMDVQVGETFKVP-SSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDV 79 (234)
T ss_dssp SEEEEEE-EEETTEEEEEEEEEE-TTCSEEEEESSCCTTCSSEEECTTCCCTTCCHHHHHHHTTTTTCEEEEEETTTEE
T ss_pred CcceEEE-EEecCceecceEEec-CCCCEEEEecCcCCCCCCeeecccccCCCCcHHHHHHHHhhcCceEEEEecCCcE
Confidence 3588865 556668899988751 347899999999999999999999999999999999999999999999998 874
No 11
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A
Probab=99.67 E-value=2.2e-17 Score=160.38 Aligned_cols=76 Identities=38% Similarity=0.603 Sum_probs=66.3
Q ss_pred cccccccccCcccchhHhhhhccccCCceeeeecccCCCCCCceEeecccCCCCchhHHHhhhccCCceEEEeec-ccc
Q psy13845 351 ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVA-KEK 428 (430)
Q Consensus 351 ~rfCLg~lsnvnR~~~vE~tR~~IGkGvsL~vdGftDp~~~~~fcLg~l~n~~r~~~v~~tR~~iG~Gv~L~y~~-g~~ 428 (430)
+.||..+ |++.+++++|.+... .+..+++||||+||++++|||||+|+|++|++++|+||+|||+||+|+|+| ||.
T Consensus 37 ~~WCsIa-YyEln~rVGe~f~~~-~~~~~v~VDGf~dps~~~RfCLg~lsN~~R~~~ve~~R~~IG~GV~L~~~~~G~V 113 (268)
T 1dd1_A 37 EYWCSIA-YFEMDVQVGETFKVP-SSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDV 113 (268)
T ss_dssp SEEEEEE-EEETTEECSCCEEEE-TTCSEEEEESCCCCCCTTEEECSSCCCTTCCHHHHHHHTTTTTCEEEEEETTTEE
T ss_pred CceEEEE-EEecCceecceEEec-CCCCEEEEecCCCCCCCCeeecccccCCCccHHHHHHHHhhcCceEEEEecCCcE
Confidence 4688865 556668999988751 246899999999999999999999999999999999999999999999998 875
No 12
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=99.67 E-value=2.1e-18 Score=152.83 Aligned_cols=62 Identities=65% Similarity=1.374 Sum_probs=55.5
Q ss_pred ccCCCCCCccCCCCCCCCcccccccccCCCccCCCccccccccccCccCCCCccccCCCCCCC
Q psy13845 214 ARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQR 276 (430)
Q Consensus 214 ~rs~dg~~~l~~~~k~lPhvi~cRLwRWPDLqs~~eLk~l~~C~~~~~~~~~~vc~NPyhyes 276 (430)
+|++||+.++++ ++++||++||||||||||++++||+++..|+++++.+.++||+|||||+.
T Consensus 68 prsldgRlqv~~-rk~~PHVi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPYHY~R 129 (144)
T 1ozj_A 68 PRSLDGRLQVSH-RKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQR 129 (144)
T ss_dssp ECCTTSCEEETT-EEECHHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEE
T ss_pred ccCCCccccccC-ccCCCeeEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcchhhh
Confidence 356788887764 58999999999999999999999999999999998888999999999953
No 13
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=99.60 E-value=3.5e-17 Score=143.34 Aligned_cols=62 Identities=55% Similarity=1.189 Sum_probs=54.3
Q ss_pred ccCCCCCCccCCCCCCCCcccccccccCCCccCCCccccccccccCccCCCCccccCCCCCCCC
Q psy13845 214 ARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRI 277 (430)
Q Consensus 214 ~rs~dg~~~l~~~~k~lPhvi~cRLwRWPDLqs~~eLk~l~~C~~~~~~~~~~vc~NPyhyesp 277 (430)
+|++||+.++++ ++++||++|||+||||||++ +||++++.|++++++++++||+|||||+..
T Consensus 67 pr~ldgrlqv~~-rk~~PHvi~cRlwRWPdL~s-~ELk~l~~C~~~~~~~~~~VC~NPyHY~Rv 128 (132)
T 3qsv_A 67 QRTLDGRLQVAG-RKGFPHVIYARLWRWPDLHK-NELKHVKYCQYAFDLKCDSVCVNPYHYERV 128 (132)
T ss_dssp ECCTTSCEEETT-EEECHHHHHHHHHTCTTCCT-TCEEECTTCTTCGGGCCSEEECCGGGEEEC
T ss_pred eccccccccccc-cccCcceeEEEEecCCccCH-hhcccCCCCCCCccCCCCeEEeCCcCcccc
Confidence 467788877665 48999999999999999966 999999999999988889999999999643
No 14
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=99.55 E-value=2.6e-16 Score=136.85 Aligned_cols=61 Identities=57% Similarity=1.266 Sum_probs=54.3
Q ss_pred cCCCCCCccCCCCCCCCcccccccccCCCccCCCccccccccccCccCCCCccccCCCCCCC
Q psy13845 215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQR 276 (430)
Q Consensus 215 rs~dg~~~l~~~~k~lPhvi~cRLwRWPDLqs~~eLk~l~~C~~~~~~~~~~vc~NPyhyes 276 (430)
|++||+.+++ .++++||+++||+||||||++++||++++.|.++++++.+.||+|||||+.
T Consensus 61 r~ldgrlqv~-~~k~~Phvi~crl~RWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHY~R 121 (124)
T 3kmp_A 61 RSLDGRLQVS-HRKGLPHVIYCRVWRWPDLQSHHELKPLECCEFPFGSKQKEVCINPYHYKR 121 (124)
T ss_dssp CCSSSCEEET-TEEECHHHHHHHHHTCTTCCCGGGEEECTTCSSCGGGCCSEEECCGGGEEE
T ss_pred cccccccccC-CcccCceeeEEEeecCCcCCCHHHcccCCCCCCCccCCCCeEEeCCccchh
Confidence 5677877765 458999999999999999999999999999999998888999999999964
No 15
>1gff_3 Bacteriophage G4 capsid proteins GPF, GPG, GPJ; coat protein, icosahedral virus; 3.00A {Enterobacteria phage G4}
Probab=37.12 E-value=14 Score=22.73 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=11.0
Q ss_pred CCceEEEeecccc
Q psy13845 416 GKGVRSLSVAKEK 428 (430)
Q Consensus 416 G~Gv~L~y~~g~~ 428 (430)
-||-+|.||||..
T Consensus 12 ~kgarlwyvggtq 24 (26)
T 1gff_3 12 SKGARLWYVGGTQ 24 (26)
T ss_pred CCceEEEEeccee
Confidence 3799999999964
No 16
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=30.49 E-value=77 Score=26.73 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=34.6
Q ss_pred HHHHHHhhc----ccCCCCcchhHHHHHHHHHHhhcc---CCHHHHHHHHhcC
Q psy13845 68 PIVKKLLGW----KKGDGEDKYSEKAVKSLVKKLKKS---NGLDELEKAITTQ 113 (430)
Q Consensus 68 ~~v~~ll~~----~~g~~~~~~~~ka~~~l~Kklk~~---~~le~L~~Av~~~ 113 (430)
.++.|+..+ .+++..+.|..+||..|+.+.+.. -..++|..|+.++
T Consensus 62 eLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alrtG 114 (114)
T 2rnn_A 62 VLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALRKG 114 (114)
T ss_dssp HHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcC
Confidence 456666555 334468899999999999998763 4589999999864
No 17
>4h4n_A Hypothetical protein BA_2335; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.10A {Bacillus anthracis}
Probab=25.25 E-value=26 Score=26.11 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=12.5
Q ss_pred eeeecCCCCceeEE
Q psy13845 37 TVCKIPPVKRKTIS 50 (430)
Q Consensus 37 ~~~k~~~~~~~~~~ 50 (430)
-|+||||+..+||+
T Consensus 9 i~fkvppnsklkvt 22 (67)
T 4h4n_A 9 IAFKVPPNSKLKVT 22 (67)
T ss_dssp EEEEECTTEEEEEE
T ss_pred eEEEcCCCCeeEEE
Confidence 58999999999985
No 18
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=20.13 E-value=37 Score=27.94 Aligned_cols=42 Identities=29% Similarity=0.552 Sum_probs=30.3
Q ss_pred CCcchhHHHHHHHHHHhhc----------cCCHHHHHHHHhcCCCCccceEec
Q psy13845 81 GEDKYSEKAVKSLVKKLKK----------SNGLDELEKAITTQDPNTKCVTIP 123 (430)
Q Consensus 81 ~~~~~~~ka~~~l~Kklk~----------~~~le~L~~Av~~~~~~t~Cv~i~ 123 (430)
++.+||+||+. ++|.|-. ++-||++-+.|..+|-.-.-||-|
T Consensus 59 ddkewaekair-fvkslgaqvliiiydqdqnrleefsrevrrrgfevrtvtsp 110 (134)
T 2l69_A 59 DDKEWAEKAIR-FVKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSP 110 (134)
T ss_dssp SSHHHHHHHHH-HHHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH
T ss_pred ccHHHHHHHHH-HHHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecCh
Confidence 57789999996 4565532 134889999999888776666655
No 19
>1m06_J J protein, small core protein; bacteriophage, virion; HET: 3DR; 3.50A {Enterobacteria phage ALPHA3}
Probab=20.06 E-value=15 Score=22.71 Aligned_cols=12 Identities=33% Similarity=0.401 Sum_probs=10.4
Q ss_pred CceEEEeecccc
Q psy13845 417 KGVRSLSVAKEK 428 (430)
Q Consensus 417 ~Gv~L~y~~g~~ 428 (430)
||-+|.||||-.
T Consensus 12 kgarlwyvggtq 23 (26)
T 1m06_J 12 KGARLWYVGGSQ 23 (26)
T ss_dssp SSSCCCCSSSCC
T ss_pred CceEEEEEcceE
Confidence 799999999964
Done!