RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13845
(430 letters)
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 183 bits (467), Expect = 7e-58
Identities = 89/129 (68%), Positives = 108/129 (83%), Gaps = 6/129 (4%)
Query: 65 FTPPIVKKLLGWKKGDG---EDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVT 121
FTPPIVK+LLGWKKG+ E+K+ EKAVKSLVKKLKK+ LDELEKAITTQ+ NTKC+T
Sbjct: 1 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCIT 60
Query: 122 IPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVN 181
IP R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+D+VCVN
Sbjct: 61 IP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVN 117
Query: 182 PYHYQRIHT 190
PYHYQR+ T
Sbjct: 118 PYHYQRVET 126
Score = 97.9 bits (244), Expect = 2e-25
Identities = 41/63 (65%), Positives = 53/63 (84%), Gaps = 1/63 (1%)
Query: 215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHY 274
R+ G +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+D+VCVNPYHY
Sbjct: 63 RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHY 121
Query: 275 QRI 277
QR+
Sbjct: 122 QRV 124
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 190
Score = 116 bits (291), Expect = 3e-31
Identities = 57/72 (79%), Positives = 61/72 (84%)
Query: 313 PVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRR 372
P FWCSISYYELN RVGETFHASQPS++VDGFTDPSNSERFCLGLLSNVNRN VE RR
Sbjct: 1 PAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRR 60
Query: 373 HIGKGPSISVDG 384
HIG+G + G
Sbjct: 61 HIGRGVRLYYIG 72
Score = 72.1 bits (177), Expect = 2e-15
Identities = 40/42 (95%), Positives = 41/42 (97%)
Query: 2 TLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPP 43
LYYIGGEVFAECLSDS+IFVQSPNCNQRYGWHPATVCKIPP
Sbjct: 67 RLYYIGGEVFAECLSDSAIFVQSPNCNQRYGWHPATVCKIPP 108
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 114 bits (286), Expect = 3e-30
Identities = 38/74 (51%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 313 PVFWCSISYYELNTRVGETFHA--SQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQI 370
P +WCSI+Y+E++ +VGETF S P ++VDG+ DPS +RFCLG LSNV+R +E+
Sbjct: 2 PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERA 61
Query: 371 RRHIGKGPSISVDG 384
R HIGKG + G
Sbjct: 62 RLHIGKGVQLECKG 75
Score = 61.5 bits (149), Expect = 2e-11
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 2 TLYYIG-GEVFAECLSDSSIFVQSPNCNQRYGWHPA-TVCKIPP 43
L G G+V+ CLSD ++FVQS ++ G P V KI P
Sbjct: 70 QLECKGEGDVWVRCLSDHAVFVQSYYLDREAGRAPGDAVHKIYP 113
>d1tz9a_ c.1.15.6 (A:) Mannonate dehydratase UxuA {Enterococcus
faecalis (Streptococcus faecalis) [TaxId: 1351]}
Length = 353
Score = 29.6 bits (66), Expect = 0.81
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 3/77 (3%)
Query: 341 VDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSI---SVDGFTDPSNSERFCLG 397
+ P+N FC G L N + IR + + +V + E
Sbjct: 232 LSLVDSPANGITFCTGSLGADPTNDLPTMIREIGHRINFVHFRNVKYLGEHRFEETAHPS 291
Query: 398 LLSNVNRNHVVEQIRRH 414
+ +++ +++ +
Sbjct: 292 VAGSLDMAELMQALVDV 308
>d1xk7a1 c.123.1.1 (A:4-405) Crotonobetainyl-CoA:carnitine
CoA-transferase, CaiB {Escherichia coli [TaxId: 562]}
Length = 402
Score = 27.7 bits (60), Expect = 3.3
Identities = 15/195 (7%), Positives = 43/195 (22%), Gaps = 3/195 (1%)
Query: 91 KSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLW 150
+L + K G + K + T D + P+ + ++ + + + +
Sbjct: 64 HALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGF 123
Query: 151 RWPSLQSHNELRSIDLCAFGFSLKRDQV---CVNPYHYQRIHTQGICTCNVEREELGKMV 207
+ + L + + A FS Q +
Sbjct: 124 GQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHK 183
Query: 208 ENLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQV 267
T + + G ++ + + +
Sbjct: 184 VRETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYI 243
Query: 268 CVNPYHYQRIHGGYM 282
+ +I +
Sbjct: 244 VMELVGITQIEECFK 258
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 26.8 bits (59), Expect = 3.5
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 4/51 (7%)
Query: 261 SLKRDQVCVNPYHYQRIHG---GYMSEDGDATDALSLSPSPAIPAGDTQPV 308
+L D+ Y +G +S DGD D L +P P + G
Sbjct: 38 ALFVDRFMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYP-LQPGSVTRC 87
>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA
deacylase {Leishmania major [TaxId: 5664]}
Length = 187
Score = 26.5 bits (58), Expect = 4.7
Identities = 5/66 (7%), Positives = 20/66 (30%), Gaps = 6/66 (9%)
Query: 73 LLGWKKGDGEDKYSEKAVKSLVKKLKK------SNGLDELEKAITTQDPNTKCVTIPSAR 126
+ + +++A++ V L + + + + ++ + I
Sbjct: 34 YIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPEKMINQPQSLEECPEMDILIVPQA 93
Query: 127 TDKGST 132
+ G
Sbjct: 94 SLGGKV 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.425
Gapped
Lambda K H
0.267 0.0575 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,634,804
Number of extensions: 75572
Number of successful extensions: 186
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 13
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)