BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13846
(1423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 417 bits (1071), Expect = e-115, Method: Compositional matrix adjust.
Identities = 238/479 (49%), Positives = 305/479 (63%), Gaps = 67/479 (13%)
Query: 997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIKKF 1056
G P+E KR+LD+I A RS+P+LS E++ S + EFL ++F+++IKKF
Sbjct: 914 GKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLC-CRDSFLQEIKKF 972
Query: 1057 LEEFSKKESVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
++ S+K T + ++ ++L D+I P E CR+KY+RAQ
Sbjct: 973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQLEKFLETCRDKYMRAQ 1026
Query: 1115 IEPATAVGALAAQSIGEPGTQMTLKTFH-------------------------------- 1142
+EP +AVGAL AQSIGEPGTQMTLKTFH
Sbjct: 1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIIT 1086
Query: 1143 ----------FA------------GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDI 1180
FA GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+
Sbjct: 1087 AQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNA 1146
Query: 1181 DSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQG 1237
+++RY CI + R G + V G + + + P+++SKS + Q +K+ LP VV++G+
Sbjct: 1147 ETVRYSICISKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPE 1206
Query: 1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARST 1297
++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG K SSNNTYEV KTLGIEAAR+T
Sbjct: 1207 VSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTT 1266
Query: 1298 IMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
I+ EI+ M NHGMSID RH ML++DLMT KGEVLGITR GLAKMKESVL LASFE T+D
Sbjct: 1267 IINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTAD 1326
Query: 1358 HLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 1415
HLFDAA++GQ D + GVSECIIMG+PMN+GTGL KLL +A S P R L+FDN EFH
Sbjct: 1327 HLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385
Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 169/280 (60%), Positives = 207/280 (73%), Gaps = 22/280 (7%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D+VLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct: 456 DGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
+AEAL VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct: 516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
A+ +I ++++ G ++ R P + ++ +WTGKQ+FS ILKP+ DCPV
Sbjct: 562 AKACQIIASILV------GKDEKIKVRLPPPAI-LKPVTLWTGKQVFSSILKPSDDCPVK 614
Query: 521 ANLKTKGRAYTA-NEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
ANL+TKG+ Y E+ C+ DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G+
Sbjct: 615 ANLRTKGKQYCGKGEDLCYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQV 674
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQNSF 619
A AM RL+R+ YL NRGFSIGIGDVTPGQG ++ +
Sbjct: 675 EAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Score = 297 bits (761), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 179/251 (71%), Gaps = 5/251 (1%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
+ ++QQ+HIQ+VSKNLY QD P+ +G+LD RMGT++K+ C TCG+NL+DC+GH+GY
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
IDL LP FH+GYF+ VI ILQ ICK TC R++L E+ F L+ P L+YL ++ LK
Sbjct: 86 IDLELPCFHVGYFKAVIGILQMICK--TCCRIMLSVEEKKQFLDYLKRPGLTYLQKRGLK 143
Query: 211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
KK+ E +K + CP+CG NG VKKCGLLKI HEKYK K D IV L + A++
Sbjct: 144 KKVSEKCRKKNTCPYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSTFLQSFETAIEH 203
Query: 271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
N E+E G Q LNPL VL LF+ IP EDIPLLLMN E KPSDLILTRLLVPP C
Sbjct: 204 NKEVEPL--LGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261
Query: 330 IRPSVISDLKS 340
IRPSV+SDLKS
Sbjct: 262 IRPSVVSDLKS 272
Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 149/237 (62%), Positives = 187/237 (78%), Gaps = 3/237 (1%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS+ ISTPIITA LDKD D D+AR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct: 1066 GVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDD 1125
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
FIL+KL ++RIRLL LEV+ +++RY CI + R G + V G + + + P+++SKS
Sbjct: 1126 CFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185
Query: 882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
+ Q +K+ LP VV++G+ ++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG K
Sbjct: 1186 YYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTK 1245
Query: 941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
SSNNTYEV KTLGIEAAR+TI+ EI+ M NHGMSID RH ML++DLMT KGEVLG
Sbjct: 1246 TSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
+GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct: 830 AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 1/64 (1%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 726
D FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL +A S P R L+FDN EFH
Sbjct: 1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385
Query: 727 FPQV 730
P V
Sbjct: 1386 IPIV 1389
Score = 74.7 bits (182), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+ +I ++++ G+
Sbjct: 521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus GN=POLR3A
PE=2 SV=1
Length = 1390
Score = 369 bits (946), Expect = e-100, Method: Compositional matrix adjust.
Identities = 215/479 (44%), Positives = 289/479 (60%), Gaps = 67/479 (13%)
Query: 997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIKKF 1056
G P+E KR+LD+I A RS+P+LS E+L + + EFL ++F+++IKKF
Sbjct: 914 GKDEPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAESIMKKNEFLC-CQDSFLQEIKKF 972
Query: 1057 LEEFSKKESVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
++E S+K T + ++ ++L D+I P E CR+KY+RAQ
Sbjct: 973 IKEVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQIEKFLETCRDKYMRAQ 1026
Query: 1115 IEP--------ATAVGALAAQ----------------SIGEPGTQMTLKTFH-------- 1142
+EP A ++G Q ++G P + +
Sbjct: 1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIIT 1086
Query: 1143 ----------------------FAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDI 1180
GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+
Sbjct: 1087 AQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNA 1146
Query: 1181 DSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQG 1237
+++RY C+ + R G + V G + + + P+++SKS + Q +K+ LP VV++G+
Sbjct: 1147 ETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPE 1206
Query: 1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARST 1297
++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+T
Sbjct: 1207 VSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTT 1266
Query: 1298 IMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
I+ EI+ M NHGMSID RH ML++DLMT KGEVLGITR GLAKMKESVL LASFE T+D
Sbjct: 1267 IINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTAD 1326
Query: 1358 HLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVP-RTLLFDNPEFH 1415
HLFDAA++GQ D + GVSECIIMG+PMN+GTGL KLL R P R L+FD EFH
Sbjct: 1327 HLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSPPRRPLIFDTNEFH 1385
Score = 345 bits (885), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 169/280 (60%), Positives = 207/280 (73%), Gaps = 22/280 (7%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVVLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct: 456 DGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
+AEAL VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct: 516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
A+ +I ++++ G ++ R P + ++ +WTGKQIFS+IL+P+ D PV
Sbjct: 562 AKACQIIASILV------GKDEKIKVRLPPPTI-LKPVTLWTGKQIFSVILRPSDDNPVR 614
Query: 521 ANLKTKGRAYTA-NEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
ANL+TKG+ Y E+ C DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++
Sbjct: 615 ANLRTKGKQYCGRGEDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQN 674
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQNSF 619
A AM RL+R+ YL NRGFSIGIGDVTPGQG ++ +
Sbjct: 675 EAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Score = 296 bits (758), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 179/251 (71%), Gaps = 5/251 (1%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
+ ++QQ+HIQ+VSKNLY QD +P+ +G+LD RMGT++K+ C TCG+NL+DC+GH+GY
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
IDL LP FH+GYFR VI ILQ ICK TC ++L +E+ F L+ P L+YL ++ LK
Sbjct: 86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143
Query: 211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
KKI + +K + C HCG NG VKKCGLLKI HEKYK K D IV L + A++
Sbjct: 144 KKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSSFLQSFETAIEH 203
Query: 271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
N E+E G Q LNPL VL LF+ IP EDIPLLLMN E KPSDLILTRLLVPP C
Sbjct: 204 NKEVEPL--LGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261
Query: 330 IRPSVISDLKS 340
IRPSV+SDLKS
Sbjct: 262 IRPSVVSDLKS 272
Score = 291 bits (745), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 187/237 (78%), Gaps = 3/237 (1%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct: 1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
FIL+KL ++RIRLL LEV+ +++RY C+ + R G + V G + + + P+++SKS
Sbjct: 1126 CFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185
Query: 882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
+ Q +K+ LP VV++G+ ++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG +
Sbjct: 1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1245
Query: 941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
+SNNTYEV KTLGIEAAR+TI+ EI+ M NHGMSID RH ML++DLMT KGEVLG
Sbjct: 1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
+GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct: 830 AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889
Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVP-RTLLFDNPEFH 726
D FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL R P R L+FD EFH
Sbjct: 1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSPPRRPLIFDTNEFH 1385
Query: 727 FPQV 730
P V
Sbjct: 1386 IPLV 1389
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+ +I ++++ G+
Sbjct: 521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 212/479 (44%), Positives = 286/479 (59%), Gaps = 67/479 (13%)
Query: 997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIKKF 1056
G P+E KR+LD+I A S+P+LS E++ + + EFL ++F+++IKKF
Sbjct: 914 GKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLC-CQDSFLQEIKKF 972
Query: 1057 LEEFSKKESVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
++ S+K T + ++ ++L D+I P E CR+KY+RAQ
Sbjct: 973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQVEKFLETCRDKYMRAQ 1026
Query: 1115 IEP--------ATAVGALAAQ----------------SIGEPGTQMTLKTFH-------- 1142
+EP A ++G Q ++G P + +
Sbjct: 1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAGVASMNITLGVPRIKEIINASKAISTPIIT 1086
Query: 1143 ----------------------FAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDI 1180
GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+
Sbjct: 1087 AQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNA 1146
Query: 1181 DSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQG 1237
+++RY C + R G + V G + + + P+++SKS + Q +K+ LP VV++G+
Sbjct: 1147 ETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPE 1206
Query: 1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARST 1297
++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+T
Sbjct: 1207 VSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTT 1266
Query: 1298 IMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
I+ EI+ M NHGMSID RH ML++DLMT KGEVLGITR GLAKMKESVL LASFE T+D
Sbjct: 1267 IINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTAD 1326
Query: 1358 HLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 1415
HLFDAA++GQ D + GVSECIIMG+PMN+GTGL KLL R P R L+FD EFH
Sbjct: 1327 HLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFDTNEFH 1385
Score = 345 bits (886), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 169/280 (60%), Positives = 207/280 (73%), Gaps = 22/280 (7%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVVLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct: 456 DGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
+AEAL VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct: 516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
A+ +I ++++ G ++ R P + ++ +WTGKQIFS+IL+P+ D PV
Sbjct: 562 AKACQIIASILV------GKDEKIKVRLPPPTI-LKPVTLWTGKQIFSVILRPSDDNPVR 614
Query: 521 ANLKTKGRAYTA-NEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
ANL+TKG+ Y E+ C DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++
Sbjct: 615 ANLRTKGKQYCGKGEDLCANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQN 674
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQNSF 619
A AM RL+R+ YL NRGFSIGIGDVTPGQG ++ +
Sbjct: 675 EAADAMSRLARLAPVYLSNRGFSIGIGDVTPGQGLLKAKY 714
Score = 299 bits (765), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 145/251 (57%), Positives = 181/251 (72%), Gaps = 5/251 (1%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
+ ++QQ+HIQ+VSKNLY QD Q P+ +G+LD RMGT++K+ C TCG+NL+DC+GH+GY
Sbjct: 26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
IDL LP FH+GYFR VI ILQ ICK TC ++L +E+ F L+ P L+YL ++ LK
Sbjct: 86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143
Query: 211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
KKI + +K ++C HCG NG VKKCGLLKI HEKYK K D IV + L + A++
Sbjct: 144 KKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203
Query: 271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
N E+E G Q LNPL VL LF+ IP ED+PLLLMN E KPSDLILTRLLVPP C
Sbjct: 204 NKEVEPL--LGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLC 261
Query: 330 IRPSVISDLKS 340
IRPSV+SDLKS
Sbjct: 262 IRPSVVSDLKS 272
Score = 290 bits (742), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 186/237 (78%), Gaps = 3/237 (1%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct: 1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
FIL+KL ++RIRLL LEV+ +++RY C + R G + V G + + + P+++SKS
Sbjct: 1126 CFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185
Query: 882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
+ Q +K+ LP VV++G+ ++RAVIH ++ G KYKLLVEGDNLR VMAT+GVKG +
Sbjct: 1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1245
Query: 941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
+SNNTYEV KTLGIEAAR+TI+ EI+ M NHGMSID RH ML++DLMT KGEVLG
Sbjct: 1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/60 (86%), Positives = 56/60 (93%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
+GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct: 830 AKGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889
Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 44/64 (68%), Gaps = 1/64 (1%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 726
D FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL R P R L+FD EFH
Sbjct: 1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFDTNEFH 1385
Query: 727 FPQV 730
P V
Sbjct: 1386 IPLV 1389
Score = 74.7 bits (182), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/55 (60%), Positives = 44/55 (80%)
Query: 21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
VLM K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+ +I ++++ G+
Sbjct: 521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 284 bits (727), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 143/281 (50%), Positives = 187/281 (66%), Gaps = 29/281 (10%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D+VLFNRQPSLH+LSI++H AK+ P RTFR NECVCTPYNADFDGDEMN+H+PQTEEA
Sbjct: 465 DGDIVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNIHVPQTEEA 524
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAEA+ LM K+NL+TP++GE +IAATQDFITG YL++ K++FF+R
Sbjct: 525 RAEAIN--------------LMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDR 570
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
A +++ + +DI I P + ++WTGKQ+FSL++KPN+ V
Sbjct: 571 ASLVQLLCMM--SDADIQFDIP--------PPAIFKPVMLWTGKQVFSLLIKPNKKSNVV 620
Query: 521 ANLKTKGRAYTA-----NEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRD 575
NL K + YT E D +VI+R S++L+G MDKSTLG G K +VFY +LRD
Sbjct: 621 INLDAKNKTYTPPAKGFPNEMSPNDGFVIIRGSQILSGVMDKSTLGDGKKHSVFYTILRD 680
Query: 576 FGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQ 616
+G D A AM R++++ + YL NRGFSIGI DV PG Q
Sbjct: 681 YGPDEAANAMNRMAKLCARYLGNRGFSIGINDVIPGSDLKQ 721
Score = 255 bits (652), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 159/372 (42%), Positives = 216/372 (58%), Gaps = 82/372 (22%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCE 1149
E C KY RA++EP TAVGA+ AQSIGEPGTQMTLKTFHFAG E+
Sbjct: 1064 EQCIYKYSRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1123
Query: 1150 --------YIEEVFVPDD--------------------------------SFILIKLDMD 1169
I V V DD +++ IK+D++
Sbjct: 1124 ASKVISTPIINSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNMAYLSIKIDLN 1183
Query: 1170 RIRLLHLEVDIDSIRYCIE---RTRGISGHLTVSGHSFL-----ILKPK----------- 1210
I L LE++I+SI + I + + ++G ++V+G + + +PK
Sbjct: 1184 TIEKLQLELNIESIAHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKSINLMKNASAD 1243
Query: 1211 ----DSS--KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLR 1264
D+S S +M +K+ LP + IKG+ I+RAVI+ D +G K +LLVEG L+
Sbjct: 1244 YKGTDASIVNSLFFRMQHLKRALPRICIKGLPDISRAVINIRD-DG--KKELLVEGYGLK 1300
Query: 1265 DVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADL 1324
+VM+T GV G K S+N+ EV++ LGIEAAR++I+ EI M HGMS+D RH L+ D+
Sbjct: 1301 EVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVDPRHIQLLGDV 1360
Query: 1325 MTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPM 1384
MT KGEVLGITR GL+KM++SVL LASFE T+DHLFDA+FY + D I GVSECII+G M
Sbjct: 1361 MTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDASFYMKNDKIEGVSECIILGQTM 1420
Query: 1385 NVGTGLIKLLQA 1396
N+GTG KL+ +
Sbjct: 1421 NIGTGAFKLVNS 1432
Score = 183 bits (464), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 113/259 (43%), Positives = 166/259 (64%), Gaps = 28/259 (10%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS+ ISTPII + L D D AR+VKGR+E+T L +V +IE+V+ +
Sbjct: 1114 GVPRIKEIINASKVISTPIINSVLVNDDDEIAARVVKGRVEKTLLEDVAYFIEDVYKNNM 1173
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIE---RTRGISGHLTVSGHSFL-----ILKPK- 874
+++ IK+D++ I L LE++I+SI + I + + ++G ++V+G + + +PK
Sbjct: 1174 AYLSIKIDLNTIEKLQLELNIESIAHSIANAPKLKILAGDVSVTGKDRINVLVTLREPKS 1233
Query: 875 --------------DSS--KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKY 918
D+S S +M +K+ LP + IKG+ I+RAVI+ D +G K
Sbjct: 1234 INLMKNASADYKGTDASIVNSLFFRMQHLKRALPRICIKGLPDISRAVINIRD-DG--KK 1290
Query: 919 KLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSID 978
+LLVEG L++VM+T GV G K S+N+ EV++ LGIEAAR++I+ EI M HGMS+D
Sbjct: 1291 ELLVEGYGLKEVMSTDGVVGTKTSTNHILEVFQVLGIEAARASIIGEIDYTMSKHGMSVD 1350
Query: 979 FRHPMLVADLMTSKGEVLG 997
RH L+ D+MT KGEVLG
Sbjct: 1351 PRHIQLLGDVMTYKGEVLG 1369
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/272 (38%), Positives = 149/272 (54%), Gaps = 11/272 (4%)
Query: 79 FRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCG 138
+G+ G ++ +D + QS +++ +++LY + R P G LD +MG + C TC
Sbjct: 13 IKGIEFGALSAKD-IIAQSEVEVHTRDLYDLEKGRIPKDGGALDTKMGISSNANECATCH 71
Query: 139 QNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRN 198
NL+ C GHFG+I L LPVFH+GYF+ I +LQ ICKN C+ VLL E+ F LR
Sbjct: 72 GNLASCHGHFGHIKLALPVFHVGYFKATIQVLQCICKN--CSAVLLDEQTKRSFLNDLRR 129
Query: 199 PALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKC------GLLKISHEKYKNRTKK 252
P + L R + KK+LE KK C +C +NGVVKK LKI H+ ++ KK
Sbjct: 130 PHIDNLRRMKILKKLLEQCKKQRRCLNCNHVNGVVKKAASGAGPAALKIVHDTFRWIGKK 189
Query: 253 KDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMN-AE 311
+ E++E NPE+E K + LNPL+VL LF+ I D LL ++ A
Sbjct: 190 ATPEKDLWDKEFDEVFSRNPELEKFVK-RIHDDLNPLKVLNLFKQISPSDCELLGIDSAR 248
Query: 312 LSKPSDLILTRLLVPPNCIRPSVISDLKSDND 343
+P I L PP CIRPSV+ D +S+ D
Sbjct: 249 GGRPEMYIWRYLPAPPVCIRPSVMMDAQSNED 280
Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/61 (77%), Positives = 53/61 (86%), Gaps = 1/61 (1%)
Query: 609 TP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQY 667
TP +GFV+NSFFSGLTP EF FH++ GREGLVDTAVKTAETGYM RRL+KSL+DL QY
Sbjct: 837 TPQSKGFVRNSFFSGLTPPEFLFHSISGREGLVDTAVKTAETGYMSRRLMKSLDDLSAQY 896
Query: 668 D 668
D
Sbjct: 897 D 897
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 39/46 (84%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
LM K+NL+TP++GE +IAATQDFITG YL++ K++FF+RA +++
Sbjct: 531 LMGVKNNLLTPKSGEPIIAATQDFITGSYLVSHKDSFFDRASLVQL 576
Score = 52.0 bits (123), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA 707
D FDA+FY + D I GVSECII+G MN+GTG KL+ +
Sbjct: 1393 DHLFDASFYMKNDKIEGVSECIILGQTMNIGTGAFKLVNS 1432
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 280 bits (715), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 140/278 (50%), Positives = 182/278 (65%), Gaps = 28/278 (10%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
DNDVVLFNRQPSLHKLSIMAH KV P RT RFNECVC PYNADFDGDEMN+H+PQTEEA
Sbjct: 450 DNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEA 509
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
+ EAL LM K+NLV+PRNGE +IAATQDFIT YLL+ K+ F +R
Sbjct: 510 KTEALE--------------LMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
I ++ ++ I P ++ +WTGKQ+F++++KPNR V
Sbjct: 556 KSISNICCYMMDASTHI----------DLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVL 605
Query: 521 ANLKTKGRAY----TANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDF 576
NL K R++ + E C +D Y+++RNSE++AG +DKS +G G K ++FY++LRD+
Sbjct: 606 VNLDAKTRSFSRIKSKTPEMCPKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDY 665
Query: 577 GEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGF 614
G A A+ RLS+M + +L NRGFSIGI DV PG+
Sbjct: 666 GALEAAEAITRLSKMCARFLGNRGFSIGIEDVQPGKSL 703
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 178/503 (35%), Positives = 253/503 (50%), Gaps = 83/503 (16%)
Query: 997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIKKF 1056
G+G VE KR + N R D ++ EI+ N LD +FL + + +F+ I+ F
Sbjct: 908 GDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTF 967
Query: 1057 -LEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAE----------- 1104
+E +K + + ++ L E + D + G E P E
Sbjct: 968 VIENIAKYLASVRERRDLAPMLEEPDMDDLDDM-EGDEFAPVAKRKSVENIIRVTEKQLR 1026
Query: 1105 ----ACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------- 1145
C EKY+RA++EP TAVGA+ AQSIGEPGTQMTLKTFHFAG
Sbjct: 1027 SFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVAAQTTLGVPRIKEI 1086
Query: 1146 --------------------------------------EVCEYIEEVFVPDDSFILIKLD 1167
+V YIEEV+ P +++ I+++
Sbjct: 1087 INAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVTTYLSIQVN 1146
Query: 1168 MDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSG-----HSFLILKPKDSSKSFNSK 1219
D I L L++ + I I T + S +TV+ H K S +
Sbjct: 1147 FDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKSSETEVYYR 1206
Query: 1220 MYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSS 1279
+ K++LP VV+ G+ INR+VI++E K +L +EG L+ VM T G+ G K S+
Sbjct: 1207 LQTYKRVLPDVVVAGIPTINRSVINQES----GKIELFMEGTGLQAVMNTEGIVGTKTST 1262
Query: 1280 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGL 1339
N+ E+ LGIEAAR +I++EI M HG+++D RH ML+ D+MT KGEVLGITR G+
Sbjct: 1263 NHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEVLGITRFGV 1322
Query: 1340 AKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVP 1398
AKMK+SVL LASFE T+DHLF+AA D I G+SECI++G +GT + +L+ +
Sbjct: 1323 AKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEE 1382
Query: 1399 RSEPVPRTLLFDNPEFHTNTLAA 1421
E P+ LLFD P H + A
Sbjct: 1383 EEEQKPKELLFDTPSLHQLEITA 1405
Score = 194 bits (494), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 148/245 (60%), Gaps = 5/245 (2%)
Query: 99 IQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVF 158
+++ ++LY R+P HG LD MGT+ K+ NC TCG++++DC+GHFGY+ L LPVF
Sbjct: 32 VEVSRRDLYTMT-DRSPAEHGALDLHMGTSNKQINCATCGESMADCMGHFGYVKLALPVF 90
Query: 159 HIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTK 218
HIGYF+ + ILQ+ICK+ C+ VLL +++ F LR P + L R + K+I + K
Sbjct: 91 HIGYFKATLTILQNICKD--CSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHCK 148
Query: 219 KVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHK 278
K+ C C + GVVKK G LKI HE+++ K +D E+ ++EA+K PE++ H
Sbjct: 149 KMRRCSKCDAMQGVVKKAGPLKIIHERFRYVRKSQDD-EENFRHSFDEALKTIPELKMHL 207
Query: 279 KFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDL 338
LNPL+VL LF+ I D LL M+ E +P +L+ + PP CIRPSV +
Sbjct: 208 SKAH-DDLNPLKVLNLFKQITPVDCELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEG 266
Query: 339 KSDND 343
+ D
Sbjct: 267 ATTED 271
Score = 177 bits (450), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 147/242 (60%), Gaps = 12/242 (4%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINA++ ISTPIIT L D D AR+VKGR+E+T L +V YIEEV+ P
Sbjct: 1079 GVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVT 1138
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSG-----HSFLILKPKD 875
+++ I+++ D I L L++ + I I T + S +TV+ H K
Sbjct: 1139 TYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKS 1198
Query: 876 SSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYG 935
S ++ K++LP VV+ G+ INR+VI++E K +L +EG L+ VM T G
Sbjct: 1199 SETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQES----GKIELFMEGTGLQAVMNTEG 1254
Query: 936 VKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+ G K S+N+ E+ LGIEAAR +I++EI M HG+++D RH ML+ D+MT KGEV
Sbjct: 1255 IVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314
Query: 996 LG 997
LG
Sbjct: 1315 LG 1316
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 49/58 (84%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
+GFV NSF+SGLTPTEF FH + GREGLVDTAVKTAETGYM RRL+KSLEDL YD
Sbjct: 824 AKGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYD 881
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 35/51 (68%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLI 72
LM K+NLV+PRNGE +IAATQDFIT YLL+ K+ F +R I ++
Sbjct: 516 LMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMM 566
Score = 43.1 bits (100), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 726
D F+AA D I G+SECI++G +GT + +L+ + E P+ LLFD P H
Sbjct: 1340 DHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEEEEEQKPKELLFDTPSLH 1399
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/272 (48%), Positives = 183/272 (67%), Gaps = 24/272 (8%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D++LFNRQPSLHKLSIM+H+A+V+P RT RFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct: 448 DGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEA 507
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAE A +LM +NL+TPRNGE L+AATQDF+T YL+++++AF+ R
Sbjct: 508 RAE--------------ATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
+ + T AD ++ + P ++ +WTGKQIF ++L+P+ V
Sbjct: 554 YR-FALMCTHFADANEHIDL---------PPPAILKPVELWTGKQIFEVLLRPSVKSHVL 603
Query: 521 ANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDV 580
N +T+ R Y+ N C +D YV RNSEL+ GS+DKS +G G K ++F+IL+RDF +
Sbjct: 604 CNFETRSRTYSKNLYMCPKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTI 663
Query: 581 AVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQ 612
A M RL+++ + +L ++GFSIGI D+ P +
Sbjct: 664 AANCMTRLAKLCARFLGDQGFSIGIPDIKPAE 695
Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 159/366 (43%), Positives = 216/366 (59%), Gaps = 59/366 (16%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEV---------------- 1147
+ C +KY RA+IEP TAVGA+ AQSIGEPGTQMTLKTFHFAG
Sbjct: 1086 DICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIIN 1145
Query: 1148 ---------------CEY-----------------------IEEVFVPDDSFILIKLDMD 1169
C+Y I+EV ++ IK+D +
Sbjct: 1146 AAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATHIKEVVKRAGCYLSIKIDKN 1205
Query: 1170 RIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSG-HSFLILKPKDSSKSFNSKMYQMKQ 1225
+ L LE++ +I I T+G+ +T +G + I+ P + + + +K
Sbjct: 1206 FVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRIVPPANIREGSLYYLQFLKN 1265
Query: 1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEV 1285
LP+V++KG+ +NR VI + D E +Y+LLVEG +LR VMAT G+KG +SN+ E
Sbjct: 1266 NLPAVIVKGIPTVNRVVISKVD-EKQERYQLLVEGYDLRAVMATPGIKGTHTTSNHIMEC 1324
Query: 1286 YKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKES 1345
TLGIE AR+TIM+EI ++M +HGMSID RH ML+ADLM+ KGE+LGITR G+AKMKES
Sbjct: 1325 ENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILGITRFGIAKMKES 1384
Query: 1346 VLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPR 1405
VL LASFE T+DHLFDAA + + D I GVSECIIMG+ + +GTGL KLL+ ++ +
Sbjct: 1385 VLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNKNNLPKK 1444
Query: 1406 TLLFDN 1411
+LL +
Sbjct: 1445 SLLLQD 1450
Score = 232 bits (592), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 120/257 (46%), Positives = 168/257 (65%), Gaps = 8/257 (3%)
Query: 81 GLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQN 140
G I+ + ED + + SH+QIV++ L+ +R P P+G+LD ++GT+ K+A CTTCG +
Sbjct: 15 GHIQFGLLSEDDIVRLSHVQIVNRELF-DLVKRKPTPYGVLDNKLGTSDKQAMCTTCGLS 73
Query: 141 LSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPA 200
+ DCVGHFGYI L LPVFHIGY + ++NILQ ICK +C+ +LL EEK + K+RN
Sbjct: 74 IVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICK--SCSTILLNEEKKQYYLRKMRNKK 131
Query: 201 LSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
+ L RKSL KKI +K C CG NG++KK G KI HEKYK +T+ ++D
Sbjct: 132 MDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTES----LQDY 187
Query: 261 LAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLIL 320
A Y++A+K+NPE+++H K LNPL L LF+ I +DI ++ M+ + +P LIL
Sbjct: 188 YALYDDAIKYNPEMKSHIKKAQ-DDLNPLVALNLFKKISYQDIEIMNMDPVIGRPERLIL 246
Query: 321 TRLLVPPNCIRPSVISD 337
T +LVPP IRPSV D
Sbjct: 247 TYMLVPPVSIRPSVPMD 263
Score = 204 bits (520), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 160/238 (67%), Gaps = 5/238 (2%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINA++NISTPIITA L+ D D+ ARIV GR+E+TTLG V +I+EV
Sbjct: 1136 GVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATHIKEVVKRAG 1195
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSG-HSFLILKPKDSSKS 879
++ IK+D + + L LE++ +I I T+G+ +T +G + I+ P + +
Sbjct: 1196 CYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRIVPPANIREG 1255
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
+ +K LP+V++KG+ +NR VI + D E +Y+LLVEG +LR VMAT G+KG
Sbjct: 1256 SLYYLQFLKNNLPAVIVKGIPTVNRVVISKVD-EKQERYQLLVEGYDLRAVMATPGIKGT 1314
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
+SN+ E TLGIE AR+TIM+EI ++M +HGMSID RH ML+ADLM+ KGE+LG
Sbjct: 1315 HTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILG 1372
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 59/78 (75%), Gaps = 7/78 (8%)
Query: 612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSF 671
+GFV NSF++G+ PTEFFFHTMGGREGLVDTAVKTAETGYMQRRL+K+LEDL YD
Sbjct: 819 KGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYD--- 875
Query: 672 DAAFYGQTDCISGVSECI 689
Y D I G+ + I
Sbjct: 876 ----YTVRDSIGGIVQFI 889
Score = 58.2 bits (139), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 34/41 (82%)
Query: 21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
+LM +NL+TPRNGE L+AATQDF+T YL+++++AF+ R
Sbjct: 513 ILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDN 722
D FDAA + + D I GVSECIIMG+ + +GTGL KLL+ ++ ++LL +
Sbjct: 1396 DHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNKNNLPKKSLLLQD 1450
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 278 bits (711), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 140/282 (49%), Positives = 188/282 (66%), Gaps = 30/282 (10%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVVLFNRQPSLH+LSI++H AK+ P RTFR NECVCTPYNADFDGDEMN+H+PQTEEA
Sbjct: 468 DGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEA 527
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAEA+ LM K+NL+TP++GE +IAATQDFITG YL++ K++F++R
Sbjct: 528 RAEAIN--------------LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDR 573
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
A ++ S +++D I+ F P ++ +WTGKQ+FSL++KPN + PV
Sbjct: 574 ATLTQLLS-MMSDG------IEHF---DIPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVV 623
Query: 521 ANLKTKGRAYTANE------EFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLR 574
NL K + + + E D +VI+R S++L+G MDKS LG G K +VFY +LR
Sbjct: 624 INLDAKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILR 683
Query: 575 DFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQ 616
D+G A AM R++++ + +L NRGFSIGI DVTP Q
Sbjct: 684 DYGPQEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQ 725
Score = 248 bits (632), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 156/377 (41%), Positives = 209/377 (55%), Gaps = 77/377 (20%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG----------------------- 1145
KY +A++EP TA+GA+ AQSIGEPGTQMTLKTFHFAG
Sbjct: 1077 KYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIKEIINASKVI 1136
Query: 1146 -------------------EVCEYIEEVFVPDDSF------------ILIKLDMDRIRLL 1174
V +E+ + D +F I +++D+ I L
Sbjct: 1137 STPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTIDKL 1196
Query: 1175 HLEVDIDSIRYCIERTRG---------------ISGHLTVSGHSFLILKPKDSSKSFNSK 1219
LE+ I+ I I R I+ ++ G+ + S N
Sbjct: 1197 QLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKAKSISTSAKEPSENDV 1256
Query: 1220 MYQMKQL---LPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 1276
Y+M+QL LP VV+KG+ I+RAVI+ D +G K +LLVEG LRDVM T GV G +
Sbjct: 1257 FYRMQQLRRALPDVVVKGLPDISRAVINIRD-DG--KRELLVEGYGLRDVMCTDGVIGSR 1313
Query: 1277 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITR 1336
++N+ EV+ LGIEAAR +I+ EI M NHGMS+D RH L+ D+MT KGEVLGITR
Sbjct: 1314 TTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLLGDVMTYKGEVLGITR 1373
Query: 1337 HGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA 1396
GL+KM++SVL LASFE T+DHLFDAAFY + D + GVSECII+G M++GTG K+++
Sbjct: 1374 FGLSKMRDSVLQLASFEKTTDHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKG 1433
Query: 1397 VPRSEP--VPRTLLFDN 1411
SE VP+ LF++
Sbjct: 1434 TNISEKDLVPKRCLFES 1450
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 114/252 (45%), Positives = 153/252 (60%), Gaps = 21/252 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS+ ISTPII A L D D AR+VKGR+E+T L +V Y+++V+ +
Sbjct: 1122 GVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNL 1181
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRG---------------ISGHLTVSGHSF 868
SFI +++D+ I L LE+ I+ I I R I+ ++ G+
Sbjct: 1182 SFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKA 1241
Query: 869 LILKPKDSSKSFNSKMYQMKQL---LPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 925
+ S N Y+M+QL LP VV+KG+ I+RAVI+ D +G K +LLVEG
Sbjct: 1242 KSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRD-DG--KRELLVEGY 1298
Query: 926 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 985
LRDVM T GV G + ++N+ EV+ LGIEAAR +I+ EI M NHGMS+D RH L+
Sbjct: 1299 GLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLL 1358
Query: 986 ADLMTSKGEVLG 997
D+MT KGEVLG
Sbjct: 1359 GDVMTYKGEVLG 1370
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 100/248 (40%), Positives = 139/248 (56%), Gaps = 11/248 (4%)
Query: 96 QSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPL 155
QS +++ +++L+ + R P +G LD +MG + C TC NL+ C GHFG++ L L
Sbjct: 29 QSEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCHGNLASCHGHFGHLKLAL 88
Query: 156 PVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILE 215
PVFHIGYF+ I ILQ ICKN C+ +LL E F +LR P + L R + KKIL+
Sbjct: 89 PVFHIGYFKATIQILQGICKN--CSAILLSETDKRQFLHELRRPGVDNLRRMGILKKILD 146
Query: 216 TTKKVSVCPHCGEINGVVKK------CGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVK 269
KK C HCG +NGVVKK LKI H+ ++ KK + + E+ E +
Sbjct: 147 QCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFRWVGKKSAPEKDIWVGEWKEVLA 206
Query: 270 FNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAEL--SKPSDLILTRLLVPP 327
NPE+E + K + LNPL+ L LF+ I D LL ++A + +P I L PP
Sbjct: 207 HNPELERYVKR-CMDDLNPLKTLNLFKQIKSADCELLGIDATVPSGRPETYIWRYLPAPP 265
Query: 328 NCIRPSVI 335
CIRPSV+
Sbjct: 266 VCIRPSVM 273
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 45/57 (78%), Positives = 50/57 (87%)
Query: 612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
+GFV+NSFFSGL+P EF FH + GREGLVDTAVKTAETGYM RRL+KSLEDL QYD
Sbjct: 845 KGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQYD 901
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 43/57 (75%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVF 78
LM K+NL+TP++GE +IAATQDFITG YL++ K++F++RA ++ S + G + F
Sbjct: 534 LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHF 590
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEP--VPRTLLFDN 722
D FDAAFY + D + GVSECII+G M++GTG K+++ SE VP+ LF++
Sbjct: 1394 DHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFES 1450
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/281 (43%), Positives = 170/281 (60%), Gaps = 31/281 (11%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D+VLFNRQPSLH++SIM H+AK++ +TFRFNECVC+PYNADFDGDEMN+ +PQTEEA
Sbjct: 568 DGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLDVPQTEEA 627
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAEAL LM K NL+TP+NGE++IA TQDF++ Y++T K+ F +R
Sbjct: 628 RAEAL--------------YLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPV-VFVRTAVIWTGKQIFSLILKPNRDCPV 519
T + + +D S + P+ ++ +WTGKQ+ S+++KPN+
Sbjct: 674 -DTFCLLCSYFSDASLYIEL----------PIPAILKPKELWTGKQLISVLIKPNKKENT 722
Query: 520 NANLKTKGRAYTAN----EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRD 575
N + + R Y+ + C DSYV SEL+ GS+ K LGS K +FY L+
Sbjct: 723 IINFEIQEREYSNKFGDLKHLCLNDSYVCFYKSELICGSLGKKVLGS-SKYGLFYYLIHH 781
Query: 576 FGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQ 616
+A+ M RLS++TS Y N+G +IGI DV P Q +
Sbjct: 782 NSSHIALKIMNRLSKLTSRYFSNKGMTIGIDDVRPSQTLTE 822
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 142/253 (56%), Gaps = 28/253 (11%)
Query: 85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
G ++KED ++ S ++I+++ +Y ++ P P+G+LD ++G ++ + C TC + L +C
Sbjct: 41 GIMSKEDIIKY-SEVKIMNREMY-KNNSGIPYPYGVLDLKLGAHKSNSVCETCNKKLINC 98
Query: 145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYL 204
GHFGYI+L PVFHIGY++ +I+IL ICK C+ +LL +EK + +
Sbjct: 99 SGHFGYIELNYPVFHIGYYKYIIHILYCICK--YCSSLLLSKEKIDFYCNLKKKSTDDSF 156
Query: 205 VRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEY 264
+K L K+IL KKV+ C CG GV+KK ++K S +++ K K +
Sbjct: 157 YKKHLFKRILNNCKKVNKCYICGNPQGVIKK--IIKPSLDQF---MKLKHIL-------- 203
Query: 265 NEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLL 324
VK N ++ + + LN L VL+LF+ I + LL + P LI+T LL
Sbjct: 204 --KVKENGKMIIKE-----EDLNSLYVLKLFKNINPYHVKLL----NIENPEKLIITALL 252
Query: 325 VPPNCIRPSVISD 337
VPPN IRPSVI D
Sbjct: 253 VPPNTIRPSVIID 265
Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 69/165 (41%), Positives = 100/165 (60%)
Query: 1252 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 1311
T Y +LVEG++L V+ GV SN+ V++ LGIEAAR TI+ EIK +E + +
Sbjct: 2171 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2230
Query: 1312 SIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCI 1371
ID RH ML+AD+M G++LGI R G+ K ++S L LASFE T++HLF ++F+ D I
Sbjct: 2231 DIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEI 2290
Query: 1372 SGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHT 1416
+ +SE II+G + +GTG +LL + L + E T
Sbjct: 2291 NNISESIIVGKNIPIGTGAFQLLYDYKLEKETKNLTLLEKAERET 2335
Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/62 (77%), Positives = 56/62 (90%)
Query: 609 TPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
+ +GFVQNSF++GL+PTEFFFHTM GREGLVDTAVKTAETGYMQRRL+K+LEDL + YD
Sbjct: 939 SESRGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYD 998
Query: 669 MS 670
S
Sbjct: 999 YS 1000
Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 90/156 (57%), Gaps = 7/156 (4%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
GVPRIKEIINAS +I TPI+ L+ + + ++A ++K +LE+TT+ ++C YI+E +
Sbjct: 1816 GVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYTSRG 1875
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISG------HLTVSGHSFLILKPKDSS 877
F+ +K + + I+ L L ++ +I+ I + I+ H+ V L + K+
Sbjct: 1876 VFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLHISLKNDE 1935
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
F +M +K+ L ++I G + I R +I +ED+E
Sbjct: 1936 FIF-FQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1970
Score = 73.2 bits (178), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 38/82 (46%), Positives = 53/82 (64%)
Query: 916 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 975
T Y +LVEG++L V+ GV SN+ V++ LGIEAAR TI+ EIK +E + +
Sbjct: 2171 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2230
Query: 976 SIDFRHPMLVADLMTSKGEVLG 997
ID RH ML+AD+M G++LG
Sbjct: 2231 DIDIRHIMLLADIMAFTGDILG 2252
Score = 61.2 bits (147), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/37 (70%), Positives = 30/37 (81%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
KY + P AVG+++AQSIGEPGTQMTLKTFHFAG
Sbjct: 1771 KYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAG 1807
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 31/40 (77%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
LM K NL+TP+NGE++IA TQDF++ Y++T K+ F +R
Sbjct: 634 LMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 221 bits (562), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 25/271 (9%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
+ D+VLFNRQPSLH++S+MAHRA+VLP RTFRFNEC C PYNADFDGDEMNVH QTE+A
Sbjct: 460 NGDLVLFNRQPSLHRVSMMAHRARVLPFRTFRFNECCCAPYNADFDGDEMNVHFVQTEKA 519
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAEAL LM+ N+++ +NGE +IA TQDF+ YL+T ++ FF+R
Sbjct: 520 RAEALQ--------------LMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDR 565
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
+ ++ S + G + +F R P + ++ +WTGKQ+F LI++P+ + V
Sbjct: 566 GEFSQMVSHWL-------GPVTQF--RLPIPAI-LKPVELWTGKQLFELIVRPSPEVDVL 615
Query: 521 ANLKTKGRAYT-ANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
+ + + YT + C + YV +S ++G +DK LG G K +F L G
Sbjct: 616 LSFEAPTKFYTRKGKHDCAEEGYVAFLDSCFISGRLDKKLLGGGAKDGLFARLHTIAGGG 675
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTP 610
M R+++ TS YL N GFS+G+GDV P
Sbjct: 676 YTARVMSRIAQFTSRYLTNYGFSLGLGDVAP 706
Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 103/291 (35%), Positives = 153/291 (52%), Gaps = 32/291 (10%)
Query: 1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGH--------- 1196
EV I EV + ++ + L+M I LHL ++ ++R +R +GH
Sbjct: 1232 EVVSEIVEVCSDTEFYLRVHLNMSVITKLHLPINAITVR---QRILAAAGHTMSPLRMLN 1288
Query: 1197 ---LTVSGHSFLILKPK-DSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVT 1252
+ V L + P ++ + + ++ LLP VV+ G+ GINRA+I E
Sbjct: 1289 EDCIEVFSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGIGGINRAMISSNGTE--- 1345
Query: 1253 KYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMS 1312
+L EG LR VM +GV + N+ V + LGIEAAR I+ EI+ +++ + +S
Sbjct: 1346 ---VLAEGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLS 1402
Query: 1313 IDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCIS 1372
ID RH L+ADLMT +G VLGITR+G+ KM +VL +ASFE T+DHL++AA + D
Sbjct: 1403 IDVRHVYLLADLMTQRGVVLGITRYGIQKMNFNVLTMASFERTTDHLYNAAATQRVDRDL 1462
Query: 1373 GVSECIIMGLPMNVGTGLIKLL-------QAVPRSEPVPRTLLFDNPEFHT 1416
VS+ II+G P+ +GT LL +P V R + P FHT
Sbjct: 1463 SVSDSIIVGKPVPLGTTSFDLLLDGSISNDILPPQRCVKRGM---GPNFHT 1510
Score = 138 bits (347), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 80/219 (36%), Positives = 126/219 (57%), Gaps = 8/219 (3%)
Query: 118 HGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP 177
+G+ D R+G + + C TCG N +CVGH G+IDL PVFH+G+F V+ I ++ICK
Sbjct: 58 YGVNDARLGVCDRLSICETCGLNSIECVGHPGHIDLEAPVFHLGFFTTVLRICRTICKR- 116
Query: 178 TCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCG 237
C+ VLL + + ++ +L + +L L R L K I K VC CG +NGVV++
Sbjct: 117 -CSHVLLDDTEIDYYKRRLSSSSLEPLQRTMLIKTIQTDAYKTRVCLKCGGLNGVVRRVR 175
Query: 238 LLKISHEKYKNRTKKKDAIVED----LLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQ 293
+++ HEKY ++ + E+ AE A +N + ++F + L+P+ V Q
Sbjct: 176 PMRLVHEKYHVEPRRGEGPRENPGGFFDAELRTACAYNKVVGECREF-VHDFLDPVRVRQ 234
Query: 294 LFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP 332
LF A+P ++ LL + +S P+DL++T LLVPP +RP
Sbjct: 235 LFLAVPPGEVILLGLAPGVS-PTDLLMTTLLVPPVPVRP 272
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 90/255 (35%), Positives = 138/255 (54%), Gaps = 30/255 (11%)
Query: 764 GVPRIKEIINASRNISTPIITA-YLDKDTDLDY-------ARIVKGRLERTTLGEVCEYI 815
GVPR+ E+INA+RNI+TP++TA L + + ++ AR VK ++ER L EV I
Sbjct: 1178 GVPRLVEVINANRNIATPVVTAPVLLMEGEENHCEIFRKRARFVKAQIERVLLREVVSEI 1237
Query: 816 EEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGH------------LTV 863
EV + ++ + L+M I LHL ++ ++R +R +GH + V
Sbjct: 1238 VEVCSDTEFYLRVHLNMSVITKLHLPINAITVR---QRILAAAGHTMSPLRMLNEDCIEV 1294
Query: 864 SGHSFLILKPK-DSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLV 922
L + P ++ + + ++ LLP VV+ G+ GINRA+I E +L
Sbjct: 1295 FSLDTLAVYPHFQDARWVHFSLRRILGLLPDVVVGGIGGINRAMISSNGTE------VLA 1348
Query: 923 EGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHP 982
EG LR VM +GV + N+ V + LGIEAAR I+ EI+ +++ + +SID RH
Sbjct: 1349 EGAELRAVMNLWGVDSTRVVCNHVAVVERVLGIEAARRVIVDEIQNILKAYSLSIDVRHV 1408
Query: 983 MLVADLMTSKGEVLG 997
L+ADLMT +G VLG
Sbjct: 1409 YLLADLMTQRGVVLG 1423
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 53/58 (91%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
+GFV NSF+SGL+PTEFFFHTM GREGLVDTAVKTAETGY+ RRL+K++E+L V+YD
Sbjct: 832 ARGFVANSFYSGLSPTEFFFHTMAGREGLVDTAVKTAETGYIYRRLMKAMENLSVRYD 889
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 1106 CREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
C KY+R EP T GA+AAQS+GEP TQMTL+TFHFAG
Sbjct: 1130 CASKYLRKACEPGTPCGAIAAQSVGEPSTQMTLRTFHFAG 1169
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIAS 69
LM+ N+++ +NGE +IA TQDF+ YL+T ++ FF+R + ++ S
Sbjct: 526 LMSTARNIISAKNGEPIIACTQDFLAAAYLVTSRDVFFDRGEFSQMVS 573
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 186 bits (473), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 108/284 (38%), Positives = 152/284 (53%), Gaps = 39/284 (13%)
Query: 328 NCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDG 387
N + V+ D DVVL+NRQPSLH++SIMAH+ KVLP+RTFR N CVC PYNADFDG
Sbjct: 410 NIVDGMVVERHLGDGDVVLYNRQPSLHRMSIMAHKVKVLPYRTFRHNLCVCPPYNADFDG 469
Query: 388 DEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITG 447
DEMNVH+PQ+EEARAE A+ LM + ++++PR G +I A DF++G
Sbjct: 470 DEMNVHVPQSEEARAE--------------AETLMLVEKHIISPRYGGPIIGAIHDFVSG 515
Query: 448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
Y+LT N + A T+ +S F P ++GK +F
Sbjct: 516 AYVLTSSNFIKDEALTLLKSSG--------------FGSELGEPDFVENGIEYYSGKSLF 561
Query: 508 SLILKPNRDCPVNANLKTKGRA----YTANEEFCHRDSYVILRNSELLAGSMDKSTLGSG 563
S L P NL+ K + E C D++VI+RN L+ G +DK+ G+
Sbjct: 562 SKTL------PKGLNLQYKAKVCKKCVQCKREECENDAFVIIRNGRLVQGVIDKNGFGA- 614
Query: 564 GKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
V +++DFG + A T + ++M+ +M RGF+ GI D
Sbjct: 615 ETGVVLNTIVKDFGSEDARTFLDSATKMSVKSMMLRGFTTGIDD 658
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/257 (28%), Positives = 120/257 (46%), Gaps = 42/257 (16%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
++++ S +IV+ + Y D PI GL+D R+G C +C + C GHFG+
Sbjct: 21 EQIRTMSVAKIVTADTY--DDDGYPIDGGLMDTRLGVIDPGLVCKSCSGRVGTCPGHFGH 78
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
I+L V HIG+ + + +L+++C P C +V + E K + K+ +L
Sbjct: 79 IELSKSVIHIGFAKDIYKLLKAVC--PHCGKVTVTEIKRDEYLEKMLKLEEDGGDPWTLS 136
Query: 211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
+L+ K SVCP CGE+ KY +K+
Sbjct: 137 DDLLKEAAKSSVCPSCGEV---------------KYD--------------------IKY 161
Query: 271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
+ H+ G Q L EV ++ E IP ED LL +N+ +++P ++LT L VPP
Sbjct: 162 DKPTTYHQLDGKSQKQLTSSEVREILEKIPNEDCKLLGINSRVARPEYMVLTVLPVPPVT 221
Query: 330 IRPSVI--SDLKSDNDV 344
+RPS+ S +S++D+
Sbjct: 222 VRPSITLESGERSEDDL 238
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 47/57 (82%)
Query: 612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
GFV++ + GL PTE+FFH MGGREGLVD AV+TA++GYMQRRLV +L+D+ +YD
Sbjct: 787 HGFVRSCYKKGLAPTEYFFHAMGGREGLVDQAVRTAQSGYMQRRLVNALQDIKAEYD 843
Score = 38.5 bits (88), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 65
+ LM + ++++PR G +I A DF++G Y+LT N + A T+
Sbjct: 487 ETLMLVEKHIISPRYGGPIIGAIHDFVSGAYVLTSSNFIKDEALTL 532
>sp|Q8PUR2|RPOA2_METMA DNA-directed RNA polymerase subunit A'' OS=Methanosarcina mazei
(strain ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833
/ OCM 88) GN=rpoA2 PE=3 SV=1
Length = 408
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 118/343 (34%), Positives = 176/343 (51%), Gaps = 56/343 (16%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIE 1152
E E+Y + IEP A G +AAQSIGEPGTQMT++TFH+AG + E ++
Sbjct: 45 ERVMEEYTVSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEIVD 104
Query: 1153 EVFVPDDSFILIKL----------DMDRIRLLHLEVDIDSIRYCIERTRGISG------- 1195
+P + I L D ++ R L E++ I + + T +S
Sbjct: 105 ARKIPSTPMMTIALSKEHPEDYAYDREKTRALAWEIEATKIDHIADVTTDLSQMKLIIDL 164
Query: 1196 -HLTVSGHSFLILKPKDS-SKSFN----------------------SKMYQMKQLLPSVV 1231
+ G + I + K+ ++ N ++ Q+ + + +V
Sbjct: 165 HEKAMEGRNITIDRVKEKFNEELNVLVSISPDIDNQIVITPGEPSYRELLQLAKSIHNVT 224
Query: 1232 IKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGI 1291
+KG++GI R V+ +E E Y L EG LR+V+ GV + S+NN E+Y+ LGI
Sbjct: 225 LKGIEGIKRVVVRKEGEE----YTLYTEGSALREVLQFEGVDRTRTSTNNINEIYEVLGI 280
Query: 1292 EAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLAS 1351
EAAR+ I+ E + G+++D RH MLVADLMTS GEV I RHG++ K SV A+
Sbjct: 281 EAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDGEVKQIGRHGISGEKASVFARAA 340
Query: 1352 FENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
FE T +HL DA G D + GV+E II+G P+ +GTG + L+
Sbjct: 341 FEVTVNHLLDAGMRGYVDQLQGVTENIIVGQPIRMGTGDVHLI 383
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 126/238 (52%), Gaps = 18/238 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYA------RIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T L K+ DYA R + +E T + + +
Sbjct: 95 GLPRLIEIVDARKIPSTPMMTIALSKEHPEDYAYDREKTRALAWEIEATKIDHIAD---- 150
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D S + + +D+ + + ID ++ + ++ + +++ P + S
Sbjct: 151 -VTTDLSQMKLIIDLHEKAMEGRNITIDRVKEKFNEELNVLVSISPDIDNQIVITPGEPS 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
++ Q+ + + +V +KG++GI R V+ +E E Y L EG LR+V+ GV
Sbjct: 210 YR---ELLQLAKSIHNVTLKGIEGIKRVVVRKEGEE----YTLYTEGSALREVLQFEGVD 262
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+ S+NN E+Y+ LGIEAAR+ I+ E + G+++D RH MLVADLMTS GEV
Sbjct: 263 RTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTSDGEV 320
>sp|P15353|RPOA2_HALMO DNA-directed RNA polymerase subunit A'' OS=Halococcus morrhuae
GN=rpoA2 PE=1 SV=1
Length = 393
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 115/356 (32%), Positives = 185/356 (51%), Gaps = 58/356 (16%)
Query: 1090 HGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG---- 1145
GR+ + AEA +Y+ ++EP VG ++AQSIGEPGTQMT+ TFH+AG
Sbjct: 30 EGRDVTDEQAVSIAEAVESRYLDTRVEPLDPVGTVSAQSIGEPGTQMTMNTFHYAGVAEI 89
Query: 1146 -------EVCEYIEEVFVPDDSFILIKLD----------------MDRIRLLHLE----- 1177
+ E ++ PD + + LD ++ R+L L
Sbjct: 90 DVTQGLPRLIELVDARKTPDTPMMTVYLDDQHAENREKAHEVVWNIESTRILALGDVSTN 149
Query: 1178 -------------------VDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNS 1218
+ +++ IE + G+ +T +G + + P + S
Sbjct: 150 VADMLVQVNLNEQTLDERMISAETVAEIIEDSLGV--EVTQTG-TTIEFGPAEPSYR--- 203
Query: 1219 KMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCS 1278
++ Q+ + L +V KG++ ++R VI +EDV+ ++ L EG DV+ GV + +
Sbjct: 204 RLLQLVEELREIVFKGIEEVSRVVIRKEDVDDGEEFILYTEGSAFGDVLDIEGVDASRTT 263
Query: 1279 SNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMS-IDFRHPMLVADLMTSKGEVLGITRH 1337
NN +EVY+ LG+EAAR TI+ E +E G+ ++ RH MLVAD+MT++G + I RH
Sbjct: 264 CNNIHEVYRNLGVEAARETIIDETMNTLEEQGLGDVNIRHLMLVADIMTAEGTIESIGRH 323
Query: 1338 GLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
G++ K SVL A+FE T +HL DAA +G+ D + GV+E +I+G P+ +GTG + L
Sbjct: 324 GISGNKNSVLARAAFEVTVNHLLDAAVHGEVDDLDGVTENVIVGKPIKLGTGDVNL 379
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 131/238 (55%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERT---TLGEVCEYIEEV 818
G+PR+ E+++A + TP++T YLD + + A V +E T LG+V + +
Sbjct: 94 GLPRLIELVDARKTPDTPMMTVYLDDQHAENREKAHEVVWNIESTRILALGDVSTNVAD- 152
Query: 819 FVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSK 878
+L++++++ L + +++ IE + G+ +T +G + + P + S
Sbjct: 153 -------MLVQVNLNEQTLDERMISAETVAEIIEDSLGV--EVTQTG-TTIEFGPAEPSY 202
Query: 879 SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKG 938
++ Q+ + L +V KG++ ++R VI +EDV+ ++ L EG DV+ GV
Sbjct: 203 R---RLLQLVEELREIVFKGIEEVSRVVIRKEDVDDGEEFILYTEGSAFGDVLDIEGVDA 259
Query: 939 VKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMS-IDFRHPMLVADLMTSKGEV 995
+ + NN +EVY+ LG+EAAR TI+ E +E G+ ++ RH MLVAD+MT++G +
Sbjct: 260 SRTTCNNIHEVYRNLGVEAARETIIDETMNTLEEQGLGDVNIRHLMLVADIMTAEGTI 317
Score = 38.5 bits (88), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 704
DAA +G+ D + GV+E +I+G P+ +GTG + L
Sbjct: 346 LDAAVHGEVDDLDGVTENVIVGKPIKLGTGDVNL 379
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia
intestinalis GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 185 bits (470), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 111/313 (35%), Positives = 169/313 (53%), Gaps = 43/313 (13%)
Query: 328 NCIRPS-VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFD 386
N +RP+ ++ ND +LFNRQPSLH++SIM A + +RTF FN VC+P+NADFD
Sbjct: 665 NSLRPNDIVYRHLLPNDTLLFNRQPSLHRMSIMQFNAVIHENRTFSFNPVVCSPFNADFD 724
Query: 387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFIT 446
GDEMN+ Q +EARAE A +LM + N+++PR+GE +I TQDF+T
Sbjct: 725 GDEMNIFYMQGQEARAE--------------AGILMGSHENIISPRHGECMIGLTQDFLT 770
Query: 447 GGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSW-RSW------------NPVV 493
G YLL+ K F R + + S D + +++ R + + V
Sbjct: 771 GIYLLSGKGIFMTRQEYCQHVSYGCDGFGDATYGVSLYNYGREFIKSIHDRRGTEEDTVG 830
Query: 494 FVRTAV-----------IWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEE---FCHR 539
FV+ +++GKQ+ S+++K N VN NL+ + Y + +
Sbjct: 831 FVKVPCLSQPCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTYKKDSDRRALSVN 890
Query: 540 DSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNR 599
D Y+I++NSE L G + K+ L S K +FY L++++G A M R +++ + +LMN
Sbjct: 891 DDYIIIQNSEHLVGRLTKTFLAS-SKNCIFYFLVQNYGPVSAARIMLRFAKVAARFLMNY 949
Query: 600 GFSIGIGDVTPGQ 612
GF+IGI DV P Q
Sbjct: 950 GFTIGIDDVMPSQ 962
Score = 164 bits (415), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 112/301 (37%), Positives = 169/301 (56%), Gaps = 22/301 (7%)
Query: 1143 FAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLE--VDIDSIRYCI---ERTRGISGHL 1197
+ G++ I E + I + LDM I + L + ++++ I ++ + + G
Sbjct: 1382 YLGQISASIIECYSQSVCHIEVNLDMKIIADMGLAGIITVETVVASILHNDKAKKLVGQD 1441
Query: 1198 TVSG----HSFLILKPKDSSKSFNSKMY---QMKQLLPSVVIKGVQGINRAVIHE--EDV 1248
SG HS + ++S + ++ +K LLP + + G+ +RAVI+E E
Sbjct: 1442 QSSGSVSIHSATRFSVRPLTQSRDDLLFDIQSLKLLLPMIPVSGISTCSRAVINEYKEFC 1501
Query: 1249 EG------VTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEI 1302
+G +TKY LLVEG L++++ G+ + SNN EV TLGIEAA +TI EI
Sbjct: 1502 QGATSSAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNIVEVANTLGIEAAVATISNEI 1561
Query: 1303 KLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK-ESVLNLASFENTSDHLFD 1361
K M++HGM++D RH L+AD+M +G VLG TR GL KMK +SV+ LASFE T +HLF+
Sbjct: 1562 KACMDSHGMAVDMRHIRLLADIMCFRGRVLGFTRFGLTKMKADSVIMLASFEKTGEHLFN 1621
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHTNTLAA 1421
AA + D +GV+E II+G PM++GTG LLQA E +T+ + P+ T L
Sbjct: 1622 AALGNKVDEANGVTESIILGKPMSMGTGSFSLLQAPYFDEKTGKTIEY-QPKQTTRFLGE 1680
Query: 1422 V 1422
V
Sbjct: 1681 V 1681
Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 142/266 (53%), Gaps = 32/266 (12%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTD------------LDYARIVKGRLERTTLGEV 811
GVPR+KEI++ ISTPI T L D D L+ AR++K +E T LG++
Sbjct: 1327 GVPRLKEIVDGVVKISTPITTVELHVDVDKEELAATVTEKYLEKARMMKNIIECTYLGQI 1386
Query: 812 CEYIEEVFVPDDSFILIKLDMDRIRLLHLE--VDIDSIRYCI---ERTRGISGHLTVSG- 865
I E + I + LDM I + L + ++++ I ++ + + G SG
Sbjct: 1387 SASIIECYSQSVCHIEVNLDMKIIADMGLAGIITVETVVASILHNDKAKKLVGQDQSSGS 1446
Query: 866 ---HSFLILKPKDSSKSFNSKMY---QMKQLLPSVVIKGVQGINRAVIHE--EDVEG--- 914
HS + ++S + ++ +K LLP + + G+ +RAVI+E E +G
Sbjct: 1447 VSIHSATRFSVRPLTQSRDDLLFDIQSLKLLLPMIPVSGISTCSRAVINEYKEFCQGATS 1506
Query: 915 ---VTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVME 971
+TKY LLVEG L++++ G+ + SNN EV TLGIEAA +TI EIK M+
Sbjct: 1507 SAPLTKYNLLVEGIGLQNILNVSGIDFTRTLSNNIVEVANTLGIEAAVATISNEIKACMD 1566
Query: 972 NHGMSIDFRHPMLVADLMTSKGEVLG 997
+HGM++D RH L+AD+M +G VLG
Sbjct: 1567 SHGMAVDMRHIRLLADIMCFRGRVLG 1592
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 86 TVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCV 145
+V + + + S +QI + LY P +P +G+LD+R+G + K C TCG++ C+
Sbjct: 33 SVLSSNALMKLSEVQITTPILYEHYP--SPATNGVLDKRLGLSDKVGKCATCGKDTKMCI 90
Query: 146 GHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLV 205
GHFG I L LPVFH G +L +C P C+RV + E +L+ L++
Sbjct: 91 GHFGTISLALPVFHPGLINDARTMLSIVC--PFCSRVKISEAD------RLKYKVLNHKF 142
Query: 206 RKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHE-KYKNRTKKKDAIVEDLLAEY 264
++ K+ E KK CP C + + KK ++ E Y+ R K I+ D++
Sbjct: 143 SLAIVKEAQEQAKKQVNCPFCHAPSTICKKSQGFRVLREMHYEERATK---ILADVIKHQ 199
Query: 265 NEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLL 306
+ K E++ + ++ +P++ L + + +P D P L
Sbjct: 200 KDIEKIQ-ELDQRLRNHVV---DPIQALHILQKVPECDYPYL 237
Score = 84.0 bits (206), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/60 (58%), Positives = 46/60 (76%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
+GF+ NSF++GL P EF H GR+G++D+A KTA+TGY+QRRLVK LEDL V YD +
Sbjct: 1085 AKGFILNSFYTGLLPFEFLAHARAGRDGVIDSACKTADTGYLQRRLVKCLEDLSVSYDFT 1144
Score = 60.8 bits (146), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 1107 REKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
R KY+R +EP + GA+AAQS+GEP TQMTLK+FH AG
Sbjct: 1280 RRKYIRLNLEPGSPCGAVAAQSVGEPSTQMTLKSFHHAG 1318
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 30/43 (69%)
Query: 21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQ 63
+LM + N+++PR+GE +I TQDF+TG YLL+ K F R +
Sbjct: 744 ILMGSHENIISPRHGECMIGLTQDFLTGIYLLSGKGIFMTRQE 786
Score = 42.0 bits (97), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLF 720
F+AA + D +GV+E II+G PM++GTG LLQA E +T+ +
Sbjct: 1620 FNAALGNKVDEANGVTESIILGKPMSMGTGSFSLLQAPYFDEKTGKTIEY 1669
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 306 LLMNAELSKPSDLILTRLLVPPNCIRPSVIS 336
L +A L++P D+ILT + VPP+C+RPSV S
Sbjct: 294 LTSHAFLTRPQDVILTHIPVPPSCLRPSVQS 324
>sp|Q8TRB8|RPOA2_METAC DNA-directed RNA polymerase subunit A'' OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpoA2
PE=3 SV=1
Length = 397
Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 172/337 (51%), Gaps = 56/337 (16%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPD 1158
Y + IEP A G +AAQSIGEPGTQMT++TFH+AG + E ++ +P
Sbjct: 48 YATSCIEPCDAAGVVAAQSIGEPGTQMTMRTFHYAGVAEINVTLGLPRLIEIVDARKIPS 107
Query: 1159 DSFILIKL----------DMDRIRLLHLEVDIDSIRYCIERTRGISG--------HLTVS 1200
+ I L D ++ R L E++ I + + T +S +
Sbjct: 108 TPMMTIALSKEHPEDYAYDREKTRALAWEIEATKIDHIADVTTDLSQMKLIIDLHEKAME 167
Query: 1201 GHSFLILKPKDS-SKSFN----------------------SKMYQMKQLLPSVVIKGVQG 1237
G + I + K+ ++ N ++ Q+ + + +V +KG++G
Sbjct: 168 GRNITIDQVKEKFNEELNVLVSISPDIDNQIVITPGEPSYRELLQLAKSIHNVTLKGIEG 227
Query: 1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARST 1297
I R V+ +E E Y L EG LRDV+ GV + S+NN E+Y+ LGIEAAR+
Sbjct: 228 IKRVVVRKEGEE----YTLYTEGSALRDVLQFEGVDKTRTSTNNINEIYEVLGIEAARNA 283
Query: 1298 IMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
I+ E + G+++D RH MLVADLMT GEV I RHG++ K SV A+FE T +
Sbjct: 284 IIKEATDTLREQGLTVDIRHIMLVADLMTCDGEVKQIGRHGISGEKASVFARAAFEVTVN 343
Query: 1358 HLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
HL DA G D + GV+E II+G P+ +GTG + L+
Sbjct: 344 HLLDAGMRGDVDQLQGVTENIIVGQPIRMGTGDVHLI 380
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 18/238 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYA------RIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T L K+ DYA R + +E T + + +
Sbjct: 92 GLPRLIEIVDARKIPSTPMMTIALSKEHPEDYAYDREKTRALAWEIEATKIDHIAD---- 147
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D S + + +D+ + + ID ++ + ++ + +++ P + S
Sbjct: 148 -VTTDLSQMKLIIDLHEKAMEGRNITIDQVKEKFNEELNVLVSISPDIDNQIVITPGEPS 206
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
++ Q+ + + +V +KG++GI R V+ +E E Y L EG LRDV+ GV
Sbjct: 207 YR---ELLQLAKSIHNVTLKGIEGIKRVVVRKEGEE----YTLYTEGSALRDVLQFEGVD 259
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+ S+NN E+Y+ LGIEAAR+ I+ E + G+++D RH MLVADLMT GEV
Sbjct: 260 KTRTSTNNINEIYEVLGIEAARNAIIKEATDTLREQGLTVDIRHIMLVADLMTCDGEV 317
>sp|B6YT17|RPOA2_THEON DNA-directed RNA polymerase subunit A'' OS=Thermococcus onnurineus
(strain NA1) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 181 bits (460), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 115/346 (33%), Positives = 180/346 (52%), Gaps = 58/346 (16%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIE 1152
E ++Y + +EP A+G +AAQSIGEP TQMTL TFH+AG + E ++
Sbjct: 47 EETVKEYQNSLVEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVD 106
Query: 1153 EVFVPDDSFILIKLD----MDRIRLLH----------------LEVDIDSIRYCIE---- 1188
P + + LD DR + L + +DI + + +E
Sbjct: 107 ARKNPSTPIMTVYLDEKHRYDREKALEVARRIEGTTLENLAREMSIDILNFEFIVEIDPE 166
Query: 1189 --RTRGI--------------SGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI 1232
G+ S V G++ LI++PK +K S + ++ + + +
Sbjct: 167 RLEKSGLDMEKIQKKLESSFKSAEFEVDGYT-LIMRPKKVTKL--SDLRRLSEKVKKHRL 223
Query: 1233 KGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIE 1292
KG+ G+ + +I +E E Y + EG N + ++ GV + +NN +E+ + LGIE
Sbjct: 224 KGLSGVGKTIIRKEGDE----YVIYTEGSNFKQILKVPGVDPTRTRTNNIHEIAEVLGIE 279
Query: 1293 AARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASF 1352
AAR+ I+ EI M + G+ +D RH MLVAD+MT G +L I RHG+ K SVL A+F
Sbjct: 280 AARNAIIEEIVNTMRDQGLEVDVRHIMLVADMMTLDGVILPIGRHGIVGEKASVLARAAF 339
Query: 1353 ENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
E T+ HLF+AA G+TD ++GV E +++G P+ VGTG++KL +P
Sbjct: 340 EITTQHLFEAAERGETDPLNGVVENVLIGQPVPVGTGIVKLAMNLP 385
Score = 117 bits (293), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/238 (34%), Positives = 135/238 (56%), Gaps = 14/238 (5%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STPI+T YLD+ D + A V R+E TTL + + + +
Sbjct: 97 GLPRIIEIVDARKNPSTPIMTVYLDEKHRYDREKALEVARRIEGTTLENLAREMS-IDIL 155
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
+ FI+ ++D RL +D++ I+ +E + S V G++ LI++PK +K
Sbjct: 156 NFEFIV---EIDPERLEKSGLDMEKIQKKLESSFK-SAEFEVDGYT-LIMRPKKVTKL-- 208
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
S + ++ + + +KG+ G+ + +I +E E Y + EG N + ++ GV +
Sbjct: 209 SDLRRLSEKVKKHRLKGLSGVGKTIIRKEGDE----YVIYTEGSNFKQILKVPGVDPTRT 264
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG 999
+NN +E+ + LGIEAAR+ I+ EI M + G+ +D RH MLVAD+MT G +L G
Sbjct: 265 RTNNIHEIAEVLGIEAARNAIIEEIVNTMRDQGLEVDVRHIMLVADMMTLDGVILPIG 322
Score = 43.9 bits (102), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 29/39 (74%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 709
F+AA G+TD ++GV E +++G P+ VGTG++KL +P
Sbjct: 347 FEAAERGETDPLNGVVENVLIGQPVPVGTGIVKLAMNLP 385
>sp|O28390|RPOA2_ARCFU DNA-directed RNA polymerase subunit A'' OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoA2 PE=3 SV=1
Length = 380
Score = 181 bits (459), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 121/372 (32%), Positives = 185/372 (49%), Gaps = 85/372 (22%)
Query: 1096 PFPSACK--------------------AEACREKYVRAQIEPATAVGALAAQSIGEPGTQ 1135
PFP A K E C + Y+ +EP A G +AAQSIGEPGTQ
Sbjct: 14 PFPPAVKEEIKAELEKHGLKKTEAKKVVEKCFQAYLANLMEPGEAAGIVAAQSIGEPGTQ 73
Query: 1136 MTLKTFHFAG--------------------------------------------EVCEYI 1151
MT++TFH+AG EV I
Sbjct: 74 MTMRTFHYAGVAEINVTLGLPRLIEILDVRKNPSTPMMTIRLLPEYAKDREKAREVANRI 133
Query: 1152 EEVFVPDDSFILIKLDMDRIRLL------HLE---VDIDSIRYCIERTRGISGHLTVSGH 1202
E +V D + I ++D+ R ++ LE + ++ ++ I + T G
Sbjct: 134 EATYVKDVADI--EVDIRRFTIIVKPDEKALERKGLTVEDLKSKIGKALKTEVEETEQGL 191
Query: 1203 SFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDN 1262
+ I +P S+ + M +L +V++ G++ I R +I +E+ E Y L EG N
Sbjct: 192 AVQITEP-----SYKALMAAFDKLKDTVIM-GLKEIKRVIIRKEEDE----YVLYTEGSN 241
Query: 1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVA 1322
L+ +M GV + ++NN YE+Y+ LGIEAAR+ I+ E +E G+ +D RH MLVA
Sbjct: 242 LKKIMKVKGVDFTRTTTNNIYEIYEVLGIEAARNAIIREALDTLEEQGLEVDVRHIMLVA 301
Query: 1323 DLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGL 1382
D+MT+ GE+ I RHG+A K+S+L A+FE T ++L DAA G+ D + G++E II+G
Sbjct: 302 DVMTADGELRQIGRHGVAGEKQSILARAAFEMTVNNLLDAAVRGEEDHLRGITENIIVGQ 361
Query: 1383 PMNVGTGLIKLL 1394
P+ +GTG ++L+
Sbjct: 362 PIKLGTGDVELV 373
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 126/234 (53%), Gaps = 17/234 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++ +N STP++T L + D + AR V R+E T + +V + + V
Sbjct: 92 GLPRLIEILDVRKNPSTPMMTIRLLPEYAKDREKAREVANRIEATYVKDVAD----IEVD 147
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
F +I + D L + ++ ++ I + T G + I +P S+
Sbjct: 148 IRRFTII-VKPDEKALERKGLTVEDLKSKIGKALKTEVEETEQGLAVQITEP-----SYK 201
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
+ M +L +V++ G++ I R +I +E+ E Y L EG NL+ +M GV +
Sbjct: 202 ALMAAFDKLKDTVIM-GLKEIKRVIIRKEEDE----YVLYTEGSNLKKIMKVKGVDFTRT 256
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
++NN YE+Y+ LGIEAAR+ I+ E +E G+ +D RH MLVAD+MT+ GE+
Sbjct: 257 TTNNIYEIYEVLGIEAARNAIIREALDTLEEQGLEVDVRHIMLVADVMTADGEL 310
Score = 37.7 bits (86), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
DAA G+ D + G++E II+G P+ +GTG ++L+
Sbjct: 339 LDAAVRGEEDHLRGITENIIVGQPIKLGTGDVELV 373
>sp|Q5JE34|RPOA2_PYRKO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=rpoA2 PE=3
SV=1
Length = 391
Score = 180 bits (457), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 118/346 (34%), Positives = 179/346 (51%), Gaps = 59/346 (17%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIE 1152
E RE Y +A IEP AVG +AAQSIGEP TQMTL TFH+AG + E ++
Sbjct: 48 ETVRE-YQKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVD 106
Query: 1153 EVFVPDDSFILIKLD----MDRIRLLHLE----------------VDIDSIRYCIE---- 1188
P + + LD DR + L + +DI ++ Y +E
Sbjct: 107 ARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAREETIDILNMEYVVEIDPE 166
Query: 1189 -----------RTRGISG-----HLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI 1232
R ++G G++ L+++PK +K S + ++ + + +
Sbjct: 167 RLEKAGLDMEKVVRKLTGSFKSAEFEAEGYT-LVVRPKKVTKL--SDLRKIAEKVKKHRL 223
Query: 1233 KGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIE 1292
KG+ G+ + +I +E E Y + EG N + V+ GV + +NN +E+ + LGIE
Sbjct: 224 KGLSGVGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIAEVLGIE 279
Query: 1293 AARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASF 1352
AAR+ I+ EI M G+ +D RH MLVAD+MT G + I RHG+ K SVL A+F
Sbjct: 280 AARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAF 339
Query: 1353 ENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
E T+ HLF AA G+ D ++GV E +++G P+ VGTG++KL ++P
Sbjct: 340 EITTQHLFAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLP 385
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 128/234 (54%), Gaps = 18/234 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STPI+T YLD++ D D A V R+E TTL + EE
Sbjct: 97 GLPRIIEIVDARKNPSTPIMTVYLDEEHRYDRDKALEVARRIEGTTLENLAR--EETIDI 154
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI--SGHLTVSGHSFLILKPKDSSKS 879
+ ++++D +R+ L+++ + + G S G++ L+++PK +K
Sbjct: 155 LNMEYVVEIDPERLEKAGLDME-----KVVRKLTGSFKSAEFEAEGYT-LVVRPKKVTKL 208
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
S + ++ + + +KG+ G+ + +I +E E Y + EG N + V+ GV
Sbjct: 209 --SDLRKIAEKVKKHRLKGLSGVGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPT 262
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
+ +NN +E+ + LGIEAAR+ I+ EI M G+ +D RH MLVAD+MT G
Sbjct: 263 RTRTNNIWEIAEVLGIEAARNAIIDEIVSTMREQGLEVDVRHIMLVADMMTLDG 316
Score = 41.6 bits (96), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 709
F AA G+ D ++GV E +++G P+ VGTG++KL ++P
Sbjct: 347 FAAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLAMSLP 385
>sp|P58192|RPOA2_SULSO DNA-directed RNA polymerase subunit A'' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA2
PE=1 SV=1
Length = 392
Score = 178 bits (452), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 127/392 (32%), Positives = 196/392 (50%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ L+ IL+ + + F A K +Y
Sbjct: 7 KPYLEEKVKQASNILPQ-KIVDDLKNLILNKEIIVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LIKL----DMDRIRLLHL----------------EVDIDSIRYCIE------RTRGIS-- 1194
I L DR + L + +DI S+ ++ + +G++
Sbjct: 120 TIYLTDEYKRDRDKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1195 ------GHLTVSGHSFLILKPKDSSKSFN-------SKMYQMKQLLPSVVIKGVQGINRA 1241
G L + F+I + +DS+ + N + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAIGRLKLG--DFMIEESEDSTLNINFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDVAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +L+AD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDIRHILLIADVMTRTGIVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/243 (31%), Positives = 127/243 (52%), Gaps = 34/243 (13%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL D+D L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKRDRDKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I G L + F+I + +DS+
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAI-------GRLKLG--DFMIEESEDST 202
Query: 878 KSFN-------SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDV 930
+ N + +++++ + + IKG++GI RA++ ++ E Y +L +G NL V
Sbjct: 203 LNINFANIDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGV 258
Query: 931 MATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMT 990
++ GV K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +L+AD+MT
Sbjct: 259 LSVKGVDVAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDIRHILLIADVMT 318
Query: 991 SKG 993
G
Sbjct: 319 RTG 321
Score = 36.6 bits (83), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGIVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|P09847|RPOA2_METTW DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA2 PE=1 SV=2
Length = 449
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 136/443 (30%), Positives = 209/443 (47%), Gaps = 86/443 (19%)
Query: 1012 IAKNSSRSDPSLSAQEILAL------SNETLDSKEFLQDTSENFVRDIKKFLEEFSKKES 1065
IA+ DP L +++ L N L+ +E L+ + ++R +K +E
Sbjct: 30 IAEEEKLKDPEL--HDLVRLFSRICERNRGLEGEELLKAVEDEYLRILKV-------REL 80
Query: 1066 VTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALA 1125
V + K L E+I + HG + + R Y RA +E AVG +A
Sbjct: 81 VKRKRAKFPPRLIEEIAEAIKR--HGLSDDELDELVRG--VRRAYERAMVEAGEAVGTVA 136
Query: 1126 AQSIGEPGTQMTLKTFHFAG--------------EVCEYIEEVFVP------------DD 1159
AQS+GEPGTQMT++TFH+AG E+ + +++ P D+
Sbjct: 137 AQSVGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDARKKISTPTMSIYFEGDRKYDE 196
Query: 1160 SFILIK----------------------------LDMDRIRLLHLEVDIDSIRYCIERTR 1191
F+ K LD ++IR HLE D I +E+T
Sbjct: 197 EFVRKKANKICKSTLNDVLKNFSIQYADMSVEAELDEEKIREKHLEYD--DIIAKVEKT- 253
Query: 1192 GISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGV 1251
+ + + PK + + ++++L I GV+ I + VI +ED E V
Sbjct: 254 --FKKVEIDNNILRFEPPKPTIRELRLLADKVRKLQ----ISGVKNIGKVVIRKEDDEWV 307
Query: 1252 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 1311
+ EG NL D GV V+ ++N+ +E+ LGIEAAR+ I+ E K ME G+
Sbjct: 308 ----IHTEGSNLGDRFKEEGVDKVRTTTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGL 363
Query: 1312 SIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCI 1371
++D RH MLVAD+MT+ G V I RHG++ K SVL ASFE T HL A+ G+ D +
Sbjct: 364 TVDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLARASFEETGKHLLRASIRGEVDHL 423
Query: 1372 SGVSECIIMGLPMNVGTGLIKLL 1394
+G+ E II+G P+ +GTG + ++
Sbjct: 424 TGIIENIIIGQPIPLGTGSVSVI 446
Score = 110 bits (275), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 127/238 (53%), Gaps = 17/238 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + ISTP ++ Y D+ D ++ R ++ ++TL +V + +
Sbjct: 165 GLPRLIEIVDARKKISTPTMSIYFEGDRKYDEEFVRKKANKICKSTLNDVLKNFSIQYA- 223
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
D + +LD ++IR HLE D I +E+T + + + PK + +
Sbjct: 224 -DMSVEAELDEEKIREKHLEYD--DIIAKVEKT---FKKVEIDNNILRFEPPKPTIRELR 277
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
++++L I GV+ I + VI +ED E V + EG NL D GV V+
Sbjct: 278 LLADKVRKLQ----ISGVKNIGKVVIRKEDDEWV----IHTEGSNLGDRFKEEGVDKVRT 329
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG 999
++N+ +E+ LGIEAAR+ I+ E K ME G+++D RH MLVAD+MT+ G V G
Sbjct: 330 TTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIG 387
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 101/281 (35%), Positives = 154/281 (54%), Gaps = 40/281 (14%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVVLFNRQPSLH++SIMAHR +V+P+RTFR N VC PYNADFDGDEMN+H+PQTEEA
Sbjct: 418 DGDVVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLSVCPPYNADFDGDEMNLHVPQTEEA 477
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
+AE AK+LM ++++++PR G LIA QD I+GGYLLT++ A+F R
Sbjct: 478 QAE--------------AKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFER 523
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLIL--------- 511
+ ++ D R P +W+GK IFSL+L
Sbjct: 524 TEVEQMLMFAGVDVD-----------RLPEPDKVENGVELWSGKTIFSLLLPKDLTIWYR 572
Query: 512 -----KPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKA 566
+P R + ++ K D + + N +LL+G++DK+ G
Sbjct: 573 NKLCDEPGRCEALEKLIEEKLIPDEEEVRALAYDGFTYILNGKLLSGAIDKTAYGR-EDG 631
Query: 567 NVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
+ I++R++G + A + +++++ + + ++GF+ I D
Sbjct: 632 KLLDIIVREYGVERARQFLDQVTKLAIWVITHKGFTTAIDD 672
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/266 (27%), Positives = 125/266 (46%), Gaps = 35/266 (13%)
Query: 81 GLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQN 140
G I+ + +++ S +I + Y +D PI GL+D+R+G C TCG
Sbjct: 9 GSIDFGILSPQEIRKMSAAEITVPDTYDEDGY--PIEGGLMDKRLGVIDPGLRCETCGAR 66
Query: 141 LSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPA 200
+C GHFG+++L PV H+G+ + + +L+S C+ C R+ L +E+ + K
Sbjct: 67 AGECPGHFGHVELARPVIHVGFAKTIHRVLESTCRE--CGRIKLTDEEIEEYFHKFEVTG 124
Query: 201 LSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
+ L K+I + K+ VCPHCG + K++ T + ++
Sbjct: 125 NRKKAKDRLIKEIHKKAKERMVCPHCGSPQFPI-----------KFERPTVYWELRKDEE 173
Query: 261 LAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLIL 320
EY + P EV E IP D+PL+ ++AE ++P ++L
Sbjct: 174 GNEYK------------------HRMMPSEVRDRLEKIPDRDLPLIGLDAEKARPEWMVL 215
Query: 321 TRLLVPPNCIRPSVI--SDLKSDNDV 344
T L VPP +RPS+ S +++++D+
Sbjct: 216 TVLPVPPVTMRPSITLESGIRAEDDL 241
Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 41/58 (70%), Positives = 51/58 (87%)
Query: 611 GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
+GFV NS+ SGLTP E+FFH MGGREGLVDTAV+TA++GYMQRRL+ +L+DL V+YD
Sbjct: 800 ARGFVINSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGYMQRRLINALQDLKVEYD 857
Score = 50.8 bits (120), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 24/130 (18%)
Query: 20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVFF 79
++LM ++++++PR G LIA QD I+GGYLLT++ A+F R + ++ + F
Sbjct: 482 KILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFERTEVEQM---------LMF 532
Query: 80 RGLIEGTVTKEDRVQQ---------------QSHIQIVSKNLYCQDPQRTPIPHGLLDRR 124
G+ + + D+V+ + I +N C +P R L++ +
Sbjct: 533 AGVDVDRLPEPDKVENGVELWSGKTIFSLLLPKDLTIWYRNKLCDEPGRCEALEKLIEEK 592
Query: 125 MGTNQKEANC 134
+ +++E
Sbjct: 593 LIPDEEEVRA 602
>sp|A9A9U9|RPOA2_METM6 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 173/328 (52%), Gaps = 50/328 (15%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYIEE-- 1153
Y R +EP AVG +AAQSIGEPGTQMT++TFH+AG E+ + +E
Sbjct: 49 YERTLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1154 -----VFVPDD--------SFILIKLDMDRIRLLHLEVDIDSIRYCIE--------RTRG 1192
+++ DD S + ++ + + ++ +D I CI +RG
Sbjct: 109 TPTMTIYLNDDFKGDREKASMVAKNIESTNVESVSEDISVDLINECITIVLNTHQLESRG 168
Query: 1193 IS-GHLTVSGHSFLILKPKDSSKSFNSK-----MYQMKQLLPSVV---IKGVQGINRAVI 1243
++ + S S + LK +D N K + +++ LP V +KGVQ I R +I
Sbjct: 169 LTVADVIESIKSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVII 228
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
+E V +Y L EG N+++V GV K ++NN E+ LGIEAAR+ I+ E+
Sbjct: 229 RKE----VDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMD 284
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
+ N G+++D RH M+VADLM + G V I RHG+ K SVL A+FE T HL+ A+
Sbjct: 285 ATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSAS 344
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLI 1391
G D + GV E II+G P+ +GTG I
Sbjct: 345 MRGYVDELGGVVENIIVGKPIAMGTGCI 372
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP +T YL+ D D + A +V +E T + V E I +
Sbjct: 93 GLPRMIEIVDARKEPSTPTMTIYLNDDFKGDREKASMVAKNIESTNVESVSEDISVDLIN 152
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGH-SFLILKPKDSS-KS 879
+ I++ R L + I+SI+ ++ L + H + L LK K S K+
Sbjct: 153 ECITIVLNTHQLESRGLTVADVIESIKSKMK--------LKIEDHENVLNLKIKTPSLKA 204
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
++ +++ ++ +KGVQ I R +I +E V +Y L EG N+++V GV
Sbjct: 205 LRKRLPKVR----AIHLKGVQNIKRVIIRKE----VDEYILYSEGSNIKEVFDIEGVDTT 256
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K ++NN E+ LGIEAAR+ I+ E+ + N G+++D RH M+VADLM + G V
Sbjct: 257 KTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVV 312
>sp|Q9V113|RPOA2_PYRAB DNA-directed RNA polymerase subunit A'' OS=Pyrococcus abyssi (strain
GE5 / Orsay) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 177 bits (448), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 123/379 (32%), Positives = 190/379 (50%), Gaps = 62/379 (16%)
Query: 1071 DKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIG 1130
+ V Q L E+++ + +K + + E +E Y RA +EP AVG +AAQSIG
Sbjct: 20 ESVKQELYEKLIKYNEKY---KLTKAEVETIIDEVVKE-YERALVEPGEAVGTVAAQSIG 75
Query: 1131 EPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFILIKLDMD---------- 1169
EP TQMTL TFH+AG + E ++ P + + LD +
Sbjct: 76 EPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEE 135
Query: 1170 ---RIRLLHLE-------VDIDSIRYCIE------RTRGI--------------SGHLTV 1199
RI LE +D+ ++ + +E G+ S +
Sbjct: 136 VARRIEGTTLENLARTTTLDLINMEFIVEIDPERLEKSGLTMEKVLKKLQSSFKSAEFEM 195
Query: 1200 SGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVE 1259
G++ LI++PK K S + ++ + + +KG+ G+ + ++ +E E Y + E
Sbjct: 196 EGYT-LIVRPKKFEKI--SDLRRLAEKVKKHRLKGLSGVGKTIVRKEGDE----YVIYTE 248
Query: 1260 GDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPM 1319
G N + V+ GV + +NN +E+ + LGIEAAR+ I+ EI M G+ +D RH M
Sbjct: 249 GSNFKQVLKVPGVDPTRTKTNNIHEIAEVLGIEAARNAIIEEIMNTMREQGLEVDIRHIM 308
Query: 1320 LVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECII 1379
LVAD+MT G V I RHG+ K SVL A+FE T HLF+AA G+ D +SGV E ++
Sbjct: 309 LVADIMTLDGVVRPIGRHGVVGEKASVLARAAFEITVQHLFEAAERGEVDNLSGVIENVL 368
Query: 1380 MGLPMNVGTGLIKLLQAVP 1398
+G P+ VGTG++KL +P
Sbjct: 369 IGQPVPVGTGMVKLTMKLP 387
Score = 107 bits (266), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 129/236 (54%), Gaps = 18/236 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STP++T YLD++ D + A V R+E TTL + +
Sbjct: 99 GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTLENLARTTTLDLI- 157
Query: 822 DDSFILIKLDMDRIRL--LHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKS 879
+ FI +++D +R+ L +E + ++ + S + G++ LI++PK K
Sbjct: 158 NMEFI-VEIDPERLEKSGLTMEKVLKKLQSSFK-----SAEFEMEGYT-LIVRPKKFEKI 210
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
S + ++ + + +KG+ G+ + ++ +E E Y + EG N + V+ GV
Sbjct: 211 --SDLRRLAEKVKKHRLKGLSGVGKTIVRKEGDE----YVIYTEGSNFKQVLKVPGVDPT 264
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+ +NN +E+ + LGIEAAR+ I+ EI M G+ +D RH MLVAD+MT G V
Sbjct: 265 RTKTNNIHEIAEVLGIEAARNAIIEEIMNTMREQGLEVDIRHIMLVADIMTLDGVV 320
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 635 GREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLP 694
GR G+V G L ++ ++ VQ+ F+AA G+ D +SGV E +++G P
Sbjct: 324 GRHGVV---------GEKASVLARAAFEITVQH--LFEAAERGEVDNLSGVIENVLIGQP 372
Query: 695 MNVGTGLIKLLQAVP 709
+ VGTG++KL +P
Sbjct: 373 VPVGTGMVKLTMKLP 387
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 150/269 (55%), Gaps = 29/269 (10%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVVLFNRQPSLH++S+MAH+ +VLP RTFR N C PYNADFDGDEMN+H+PQ+EEA
Sbjct: 413 DGDVVLFNRQPSLHRISMMAHKVRVLPGRTFRLNLLDCPPYNADFDGDEMNLHVPQSEEA 472
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
AE A+ LM N++TPR G +I QD+I+G YLL+ K
Sbjct: 473 IAE--------------ARELMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLL-- 516
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
T+ +T++ +D G + + + P +TGKQ+ SL L + +
Sbjct: 517 --TVEEVATILG-VTDFVGELGEPAILAPKPY--------YTGKQVISLFLPKDFNFHGP 565
Query: 521 ANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDV 580
AN+ RA +E C DS+++++N LL G DK +G+ ++ + +R++G +
Sbjct: 566 ANISKGPRA--CKDEICPHDSFIVIKNGLLLEGVFDKKAIGNQQPESMLHWSIREYGTEY 623
Query: 581 AVTAMWRLSRMTSFYLMNRGFSIGIGDVT 609
M + +M +L RGF++ + D+T
Sbjct: 624 GKWLMDNVFKMFIRFLEMRGFTMTLEDIT 652
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 134/278 (48%), Gaps = 58/278 (20%)
Query: 78 FFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTC 137
RG+ G ++ + ++Q S I++ +Y +D TPI G++D ++G + C C
Sbjct: 5 IIRGVKFGVLSPNE-IRQMSVTAIITSEVYDED--GTPIEGGVMDPKLGVIEPGQKCPVC 61
Query: 138 GQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFR---- 193
G L+ C GHFG+I+L PV HIGY + + + L+S C C R+ + E+ ++
Sbjct: 62 GNTLAGCPGHFGHIELIKPVIHIGYVKHIYDFLRSTCWR--CGRIKIKEQDLERYKRIYN 119
Query: 194 -AKLRNPALSYLVRKSLKKKILETTKKVSV----CPHCGEINGVVKKCGLLKISHEKYKN 248
KLR P S ++++E KK+S+ CPHCGE KI EK N
Sbjct: 120 AIKLRWP--------SAARRLVEYIKKISIKNLECPHCGEKQ--------FKIKLEKPYN 163
Query: 249 RTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLM 308
FN E + G I L+P E+ E IP D+ LL
Sbjct: 164 ---------------------FNEE-----RNGSIVKLSPSEIRDRLERIPDSDVELLGY 197
Query: 309 NAELSKPSDLILTRLLVPPNCIRPSVI--SDLKSDNDV 344
+ + S+P +ILT L VPP IRPS+ S +++++D+
Sbjct: 198 DPKSSRPEWMILTVLPVPPITIRPSITIESGIRAEDDL 235
Score = 94.7 bits (234), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 606 GDVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLC 664
GD+ P +GFV+NSF GL+P E FFH GGREGLVDTAVKT+++GYMQRRL+ +L DL
Sbjct: 772 GDIAPEARGFVKNSFMRGLSPYEMFFHAAGGREGLVDTAVKTSQSGYMQRRLINALSDLR 831
Query: 665 VQYDMSFDAAFYG 677
++YD + + YG
Sbjct: 832 IEYDGTV-RSLYG 843
Score = 37.7 bits (86), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFF 59
LM N++TPR G +I QD+I+G YLL+ K
Sbjct: 479 LMLVHKNIITPRYGGPIIGGGQDYISGAYLLSVKTTLL 516
>sp|Q8U0M5|RPOA2_PYRFU DNA-directed RNA polymerase subunit A'' OS=Pyrococcus furiosus
(strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpoA2
PE=1 SV=1
Length = 397
Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 178/344 (51%), Gaps = 64/344 (18%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVP 1157
+Y RA +EP VG +AAQSIGEP TQMTL TFH+AG + E ++ P
Sbjct: 54 EYERALVEPGEPVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNP 113
Query: 1158 DDSFILIKLD----MDRIR-----------------------LLHLE--VDIDSIRYCIE 1188
+ + LD DR + L++ E V+ID R +E
Sbjct: 114 STPMMTVYLDEEHRYDRAKAEEVARRIEGTTLENLARSTTLDLINFEFIVEIDPER--LE 171
Query: 1189 RTRGI--------------SGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKG 1234
R+ G+ S V G++ LI++PK + K S + + + + +KG
Sbjct: 172 RS-GLTMEKVVKKLESSFKSAEFEVDGYT-LIVRPKKADKI--SDLRRFAEKIKKHRLKG 227
Query: 1235 VQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAA 1294
+ G+ + ++ +E E Y + EG N + V+ GV + +NN +E+ + LGIEAA
Sbjct: 228 LSGVGKTIVRKEGDE----YVIYTEGSNFKQVLKVPGVDPTRTRTNNIHEIAEVLGIEAA 283
Query: 1295 RSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFEN 1354
R+ I+ EI M+ G+ +D RH MLVAD+MT G V I RHG+ K SVL A+FE
Sbjct: 284 RNAIIDEIVSTMQEQGLEVDIRHIMLVADMMTLDGIVRPIGRHGVVGEKSSVLARAAFEI 343
Query: 1355 TSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
T HLF+AA G+ D ++GV E +++G P+ VGTG++KL +P
Sbjct: 344 TVQHLFEAAEKGEVDNLNGVIENVLIGQPVPVGTGMVKLTMKLP 387
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 128/232 (55%), Gaps = 14/232 (6%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARI--VKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STP++T YLD++ D A+ V R+E TTL + +
Sbjct: 99 GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDRAKAEEVARRIEGTTLENLARSTTLDLI- 157
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
+F I +++D RL + ++ + +E + S V G++ LI++PK + K
Sbjct: 158 --NFEFI-VEIDPERLERSGLTMEKVVKKLESSFK-SAEFEVDGYT-LIVRPKKADKI-- 210
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
S + + + + +KG+ G+ + ++ +E E Y + EG N + V+ GV +
Sbjct: 211 SDLRRFAEKIKKHRLKGLSGVGKTIVRKEGDE----YVIYTEGSNFKQVLKVPGVDPTRT 266
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
+NN +E+ + LGIEAAR+ I+ EI M+ G+ +D RH MLVAD+MT G
Sbjct: 267 RTNNIHEIAEVLGIEAARNAIIDEIVSTMQEQGLEVDIRHIMLVADMMTLDG 318
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 635 GREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLP 694
GR G+V G L ++ ++ VQ+ F+AA G+ D ++GV E +++G P
Sbjct: 324 GRHGVV---------GEKSSVLARAAFEITVQH--LFEAAEKGEVDNLNGVIENVLIGQP 372
Query: 695 MNVGTGLIKLLQAVP 709
+ VGTG++KL +P
Sbjct: 373 VPVGTGMVKLTMKLP 387
>sp|P11514|RPOA2_SULAC DNA-directed RNA polymerase subunit A'' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA2 PE=3 SV=2
Length = 393
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 120/339 (35%), Positives = 180/339 (53%), Gaps = 62/339 (18%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVP 1157
+Y ++ IEP A+G + AQS+GEPGTQMTL+TFHFAG + E ++ VP
Sbjct: 56 EYQQSLIEPGEAIGVVTAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDARKVP 115
Query: 1158 DDSFILI------KLDMD-------RIRLLHLE-------VDIDSIRYCIE------RTR 1191
+ I K D D RI +E VDI ++ ++ + +
Sbjct: 116 STPMMTIYLTDEYKTDKDKALDIARRIEYTRVENVVSSVSVDISNMSITLQFDQEMLKDK 175
Query: 1192 GIS-------------GHLTVSG---HSFLILKPK-DSSKSFNSKMYQMKQLLPSVVIKG 1234
G+S G + + +SF I K DS + +++M++ + + IKG
Sbjct: 176 GVSIEEIKKIITKLKLGEIRIEDNDEYSFTIYFEKIDSIMA----LFKMREKILNTKIKG 231
Query: 1235 VQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAA 1294
V+GI RA++ ++ E Y ++ +G NL +M GV K +NN +EV + LGIEAA
Sbjct: 232 VKGIKRAIVQKKGDE----YVIITDGSNLEGIMNVTGVDINKIQTNNIHEVEEVLGIEAA 287
Query: 1295 RSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFEN 1354
R I EIK V+E G+ +D RH +LV+D+MT G++ I RHG+ K SVL A+FE
Sbjct: 288 RELISREIKKVLEEQGLDVDMRHIVLVSDIMTRTGDIRQIGRHGVTGEKSSVLARAAFEV 347
Query: 1355 TSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
T HL DAA G+ + GV E II+G P+ +GTG+++L
Sbjct: 348 TVKHLLDAAARGEREEFKGVIENIIIGQPIRLGTGIVEL 386
Score = 111 bits (277), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 131/242 (54%), Gaps = 28/242 (11%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DKD LD AR R+E T E +
Sbjct: 101 GLPRLIEIVDARKVPSTPMMTIYLTDEYKTDKDKALDIAR----RIEYTR----VENVVS 152
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSG---HSFLILKPK 874
D S + I L D+ L V I+ I+ I + + G + + +SF I K
Sbjct: 153 SVSVDISNMSITLQFDQEMLKDKGVSIEEIKKIITKLK--LGEIRIEDNDEYSFTIYFEK 210
Query: 875 -DSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMAT 933
DS + +++M++ + + IKGV+GI RA++ ++ E Y ++ +G NL +M
Sbjct: 211 IDSIMA----LFKMREKILNTKIKGVKGIKRAIVQKKGDE----YVIITDGSNLEGIMNV 262
Query: 934 YGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
GV K +NN +EV + LGIEAAR I EIK V+E G+ +D RH +LV+D+MT G
Sbjct: 263 TGVDINKIQTNNIHEVEEVLGIEAARELISREIKKVLEEQGLDVDMRHIVLVSDIMTRTG 322
Query: 994 EV 995
++
Sbjct: 323 DI 324
>sp|Q6LXI7|RPOA2_METMP DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain S2 / LL) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 172/330 (52%), Gaps = 50/330 (15%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYIEEVF 1155
Y R +EP AVG +AAQSIGEPGTQMT++TFH+AG E+ + +E
Sbjct: 49 YERTLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1156 VP------DDSF---------ILIKLDMDRIRLLHLEVDIDSIRYCIE--------RTRG 1192
P +D F + ++ + + ++ +D + CI +RG
Sbjct: 109 TPTMTIYLNDEFKGNREKAATVAKNIESTNVESVSEDISVDLVNECITIILNNQQLESRG 168
Query: 1193 ISGHLTVSG-HSFLILKPKDSSKSFNSK-----MYQMKQLLPSVV---IKGVQGINRAVI 1243
++ + S + LK +D N K + +++ LP V +KGVQ I R +I
Sbjct: 169 LTVPDVIDAIKSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVII 228
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
+E V +Y L EG N+++V GV K ++NN E+ LGIEAAR+ I+ E+
Sbjct: 229 RKE----VDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMD 284
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
+ N G+++D RH M+VADLM + G V I RHG+ K SVL A+FE T HL+ A+
Sbjct: 285 ATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSAS 344
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
G D + GV E II+G P+++GTG I +
Sbjct: 345 MRGYVDELGGVVENIIVGKPISMGTGCIDI 374
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 20/236 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP +T YL+ + + + A V +E T + V E I V
Sbjct: 93 GLPRMIEIVDARKEPSTPTMTIYLNDEFKGNREKAATVAKNIESTNVESVSEDISVDLVN 152
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGH-SFLILKPKDSS-KS 879
+ I++ R L + ID+I+ ++ L + H + L LK K S K+
Sbjct: 153 ECITIILNNQQLESRGLTVPDVIDAIKSKMK--------LKIEDHENVLNLKIKTPSLKA 204
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
++ +++ ++ +KGVQ I R +I +E V +Y L EG N+++V GV
Sbjct: 205 LRKRLPKVR----AIHLKGVQNIKRVIIRKE----VDEYILYSEGSNIKEVFDIEGVDTT 256
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K ++NN E+ LGIEAAR+ I+ E+ + N G+++D RH M+VADLM + G V
Sbjct: 257 KTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVV 312
>sp|A6VGV0|RPOA2_METM7 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 176 bits (445), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/328 (35%), Positives = 171/328 (52%), Gaps = 50/328 (15%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCE------ 1149
Y R +EP AVG +AAQSIGEPGTQMT++TFH+AG E+ +
Sbjct: 49 YERTLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1150 ------YIEEVFVPD---DSFILIKLDMDRIRLLHLEVDIDSIRYCIE--------RTRG 1192
Y+ + F D S + ++ + + ++ +D I CI +RG
Sbjct: 109 TPTMTIYLNDEFKGDREKASMVAKNIESTDVESVSEDISVDLINECITIVLNMHQLESRG 168
Query: 1193 IS-GHLTVSGHSFLILKPKDSSKSFNSK-----MYQMKQLLPSVV---IKGVQGINRAVI 1243
++ + S S + LK +D N K + +++ LP V +KGVQ I R +I
Sbjct: 169 LTVADVIESIKSKMKLKIEDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVII 228
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
+E V +Y L EG N+++V GV K ++NN E+ LGIEAAR+ I+ E+
Sbjct: 229 RKE----VDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMD 284
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
+ N G+++D RH M+VADLM + G V I RHG+ K SVL A+FE T HL+ A+
Sbjct: 285 ATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSAS 344
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLI 1391
G D + GV E II+G P+ +GTG I
Sbjct: 345 MRGYVDELGGVVENIIVGKPIAMGTGCI 372
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 34/243 (13%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP +T YL+ + D + A +V +E T + V E I +
Sbjct: 93 GLPRMIEIVDARKEPSTPTMTIYLNDEFKGDREKASMVAKNIESTDVESVSEDISVDLI- 151
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS-GHLTVSGHSFLILKPKDSSKSF 880
+ I I L+M ++ +RG++ + S S + LK +D
Sbjct: 152 -NECITIVLNMHQLE-----------------SRGLTVADVIESIKSKMKLKIEDHENVL 193
Query: 881 NSK-----MYQMKQLLPSVV---IKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMA 932
N K + +++ LP V +KGVQ I R +I +E V +Y L EG N+++V
Sbjct: 194 NLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVIIRKE----VDEYILYSEGSNIKEVFD 249
Query: 933 TYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSK 992
GV K ++NN E+ LGIEAAR+ I+ E+ + N G+++D RH M+VADLM +
Sbjct: 250 IEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTD 309
Query: 993 GEV 995
G V
Sbjct: 310 GVV 312
>sp|O93777|RPOA2_PYRHO DNA-directed RNA polymerase subunit A'' OS=Pyrococcus horikoshii
(strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139
/ OT-3) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/341 (34%), Positives = 174/341 (51%), Gaps = 58/341 (17%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVP 1157
+Y +A IEP AVG +AAQSIGEP TQMTL TFH+AG + E ++ P
Sbjct: 54 EYEKALIEPGEAVGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKNP 113
Query: 1158 DDSFILIKLDMD-------------RIRLLHLE-------VDIDSIRYCIE------RTR 1191
+ + LD + RI LE +D+ ++ + +E
Sbjct: 114 STPMMTVYLDEEHRYDREKAEEVARRIEGTTLENLARTTTLDLINMEFIVEVDPERLEKS 173
Query: 1192 GI--------------SGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQG 1237
G+ S G++ LI++PK K S + ++ + + +KG+ G
Sbjct: 174 GLTMEKILKKLQSSFKSAEFEADGYT-LIVRPKKIEKI--SDLRRLSEKVKKHRLKGLSG 230
Query: 1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARST 1297
+ + +I +E E Y + EG N + V+ GV + +NN +E+ + LGIEAAR+
Sbjct: 231 VGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPTRTRTNNIHEIAEVLGIEAARNA 286
Query: 1298 IMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
I+ EI M G+ +D RH MLVAD+MT G V I RHG+ K SVL A+FE T
Sbjct: 287 IIEEIINTMHEQGLEVDIRHIMLVADIMTLDGVVRPIGRHGVVGEKASVLARAAFEITVQ 346
Query: 1358 HLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
HLF+AA G+ D +SGV E +++G P+ VGTG++KL +P
Sbjct: 347 HLFEAAERGEVDNLSGVIENVLIGQPVPVGTGMVKLTMKLP 387
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 128/236 (54%), Gaps = 18/236 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STP++T YLD++ D + A V R+E TTL + +
Sbjct: 99 GLPRIIEIVDARKNPSTPMMTVYLDEEHRYDREKAEEVARRIEGTTLENLARTTTLDLI- 157
Query: 822 DDSFILIKLDMDRIRL--LHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKS 879
+ FI +++D +R+ L +E + ++ + S G++ LI++PK K
Sbjct: 158 NMEFI-VEVDPERLEKSGLTMEKILKKLQSSFK-----SAEFEADGYT-LIVRPKKIEKI 210
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
S + ++ + + +KG+ G+ + +I +E E Y + EG N + V+ GV
Sbjct: 211 --SDLRRLSEKVKKHRLKGLSGVGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPT 264
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+ +NN +E+ + LGIEAAR+ I+ EI M G+ +D RH MLVAD+MT G V
Sbjct: 265 RTRTNNIHEIAEVLGIEAARNAIIEEIINTMHEQGLEVDIRHIMLVADIMTLDGVV 320
Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 11/75 (14%)
Query: 635 GREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLP 694
GR G+V G L ++ ++ VQ+ F+AA G+ D +SGV E +++G P
Sbjct: 324 GRHGVV---------GEKASVLARAAFEITVQH--LFEAAERGEVDNLSGVIENVLIGQP 372
Query: 695 MNVGTGLIKLLQAVP 709
+ VGTG++KL +P
Sbjct: 373 VPVGTGMVKLTMKLP 387
>sp|A4YCR0|RPOA2_METS5 DNA-directed RNA polymerase subunit A'' OS=Metallosphaera sedula
(strain ATCC 51363 / DSM 5348) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 175 bits (444), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/346 (33%), Positives = 173/346 (50%), Gaps = 64/346 (18%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIE 1152
E + Y+ + + P A+G +AAQSIGEPGTQMTL+TFHFAG + E ++
Sbjct: 50 EIVMKDYLSSLVHPGEAIGVVAAQSIGEPGTQMTLRTFHFAGVRELNVTLGLPRLIEIVD 109
Query: 1153 EVFVPDDSFILIKLDMD--RIRLLHLEV----DIDSIRYCIERTRGISGHLTVSGHSFLI 1206
VP + I L+ + + R + LEV + + + +E +L V G ++
Sbjct: 110 ARKVPSTPMMTIYLNEEYAKDRDMALEVARRIEYTRVEHVVETV-----NLDVGGMGIIL 164
Query: 1207 -----------LKPKDSSKSFN---------------------------SKMYQMKQLLP 1228
L +D K + +++ ++ +
Sbjct: 165 KLDPVLLKDKGLSTEDVEKVIKKLKMGDYRVENSDEYTIAIYFENMETVTGLFKAREKIL 224
Query: 1229 SVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKT 1288
S IKGV+GI RA+I ++ E Y ++ +G NL V+ GV + +NN +EV
Sbjct: 225 STKIKGVKGIKRAIIRKKGDE----YVIITDGSNLEGVLGVKGVDVSRIETNNLHEVESV 280
Query: 1289 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLN 1348
LG+EAAR I EIK V+E G+ +D RH LV+D+MT GEV I RHG+ K SVL
Sbjct: 281 LGVEAARELITREIKRVLEEQGLDVDIRHIELVSDIMTRTGEVRQIGRHGVTGEKTSVLA 340
Query: 1349 LASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
A+FE T HL DAA G + GV E II+G P+ +GTG+++LL
Sbjct: 341 RAAFEVTVKHLLDAAARGDMEEFKGVVENIIIGQPIKLGTGMVELL 386
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 12/234 (5%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP++T YL+++ D D A V R+E T E++ E
Sbjct: 100 GLPRLIEIVDARKVPSTPMMTIYLNEEYAKDRDMALEVARRIEYTR----VEHVVETVNL 155
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
D + I L +D + L + + + I++ + G V + +
Sbjct: 156 DVGGMGIILKLDPVLLKDKGLSTEDVEKVIKKLK--MGDYRVENSDEYTIAIYFENMETV 213
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
+ +++ ++ + S IKGV+GI RA+I ++ E Y ++ +G NL V+ GV +
Sbjct: 214 TGLFKAREKILSTKIKGVKGIKRAIIRKKGDE----YVIITDGSNLEGVLGVKGVDVSRI 269
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
+NN +EV LG+EAAR I EIK V+E G+ +D RH LV+D+MT GEV
Sbjct: 270 ETNNLHEVESVLGVEAARELITREIKRVLEEQGLDVDIRHIELVSDIMTRTGEV 323
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
DAA G + GV E II+G P+ +GTG+++LL
Sbjct: 352 LDAAARGDMEEFKGVVENIIIGQPIKLGTGMVELL 386
>sp|O27126|RPOA2_METTH DNA-directed RNA polymerase subunit A'' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA2 PE=3 SV=1
Length = 451
Score = 175 bits (443), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 67/343 (19%)
Query: 1106 CREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYI 1151
R Y RA++E AVG +AAQS+GEPGTQMT++TFH+AG E+ +
Sbjct: 117 VRRAYDRARVEAGEAVGTVAAQSVGEPGTQMTMRTFHYAGVAELNVTLGLPRLIEIVDAR 176
Query: 1152 EEVFVP------------DDSFI----------------------------LIKLDMDRI 1171
+++ P D+ F+ + +LD ++I
Sbjct: 177 KKISTPTMSIYFEGDLRYDEEFVRRKANKIGKSTLNDVLKNFSIQYADMSVVAELDEEKI 236
Query: 1172 RLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVV 1231
+ HLE D I +E+T + + + PK + + ++++L
Sbjct: 237 QEKHLEYD--EILAKVEKT---FKKVEIDNNILRFEPPKPTIRELRLLADKVRKLQ---- 287
Query: 1232 IKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGI 1291
I GV+ I + VI +ED E V + EG NL V+ GV V+ ++N+ +E+ LGI
Sbjct: 288 ISGVKNIGKVVIRKEDDEWV----IHTEGSNLGAVLKEEGVDKVRTTTNDIHEIETVLGI 343
Query: 1292 EAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLAS 1351
EAAR+ I+ E K ME G+++D RH MLVAD+MT+ G V I RHG++ K SVL AS
Sbjct: 344 EAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIGRHGISGEKASVLARAS 403
Query: 1352 FENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
FE T HL A+ G+ D ++G+ E II+G P+ +GTG + ++
Sbjct: 404 FEETGKHLLRASIRGEVDHLTGIIENIIIGQPIPLGTGSVSVV 446
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 129/238 (54%), Gaps = 17/238 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + ISTP ++ Y + D D ++ R ++ ++TL +V + +
Sbjct: 165 GLPRLIEIVDARKKISTPTMSIYFEGDLRYDEEFVRRKANKIGKSTLNDVLKNFSIQYA- 223
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
D ++ +LD ++I+ HLE D I +E+T + + + PK + +
Sbjct: 224 -DMSVVAELDEEKIQEKHLEYD--EILAKVEKT---FKKVEIDNNILRFEPPKPTIRELR 277
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
++++L I GV+ I + VI +ED E V + EG NL V+ GV V+
Sbjct: 278 LLADKVRKLQ----ISGVKNIGKVVIRKEDDEWV----IHTEGSNLGAVLKEEGVDKVRT 329
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG 999
++N+ +E+ LGIEAAR+ I+ E K ME G+++D RH MLVAD+MT+ G V G
Sbjct: 330 TTNDIHEIETVLGIEAARNAIIHEAKRTMEEQGLTVDIRHIMLVADMMTADGSVKSIG 387
>sp|Q5UZR5|RPOA2_HALMA DNA-directed RNA polymerase subunit A'' OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rpoA2 PE=3 SV=1
Length = 395
Score = 175 bits (443), Expect = 3e-42, Method: Composition-based stats.
Identities = 110/350 (31%), Positives = 180/350 (51%), Gaps = 65/350 (18%)
Query: 1103 AEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYI 1151
A+A +Y+ +++P VG ++AQSIGEPGTQMT+ TFH+AG + E +
Sbjct: 45 AKAVETRYLDTRVDPLDPVGTVSAQSIGEPGTQMTMNTFHYAGVAEIDVTQGLPRLIELV 104
Query: 1152 EEVFVPDDSFILIKLD----------------MDRIRLLHL------------EVDI--- 1180
+ PD + + LD ++ R+L L E+D+
Sbjct: 105 DARKTPDTPMMTVHLDEEYATDRERAHEVVWKIEATRILALGDISTNVADMLVEIDLNED 164
Query: 1181 ----------------DSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMK 1224
+ I IE G+S T + + P++ S + Q+
Sbjct: 165 TLLERWPTVNDTDAIAEEIAETIESNLGVS---TRQAGTLIEFGPEEPSYR---DLLQLV 218
Query: 1225 QLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYE 1284
+ L +V KG++ I R VI +E+ + ++ L EG + +V+ GV + + NN +E
Sbjct: 219 EELREIVFKGIEEITRVVIRKEETDNGEEFVLYTEGSDFGEVLDIEGVDASRTTCNNIHE 278
Query: 1285 VYKTLGIEAARSTIMTEIKLVMENHGMS-IDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
+Y+ LG+EAAR T++ E +E G+ ++ RH MLVAD+MT++G + I RHG++ K
Sbjct: 279 IYRELGVEAARETLINETMNTLEEQGLDDVNVRHLMLVADIMTNEGTIESIGRHGISGSK 338
Query: 1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
+SVL A+FE T +HL DAA +G+ D + GV+E +I+G P+ +GTG + L
Sbjct: 339 DSVLARAAFEVTVNHLLDAAIHGEVDELDGVTENVIVGKPIKLGTGDVNL 388
Score = 106 bits (264), Expect = 2e-21, Method: Composition-based stats.
Identities = 70/245 (28%), Positives = 131/245 (53%), Gaps = 27/245 (11%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERT---TLGEVCEYIEEV 818
G+PR+ E+++A + TP++T +LD++ TD + A V ++E T LG++ + +
Sbjct: 96 GLPRLIELVDARKTPDTPMMTVHLDEEYATDRERAHEVVWKIEATRILALGDISTNVAD- 154
Query: 819 FVPDDSFILIKLDMDRIRLLH-------LEVDIDSIRYCIERTRGISGHLTVSGHSFLIL 871
+L+++D++ LL + + I IE G+S T + +
Sbjct: 155 -------MLVEIDLNEDTLLERWPTVNDTDAIAEEIAETIESNLGVS---TRQAGTLIEF 204
Query: 872 KPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVM 931
P++ S + Q+ + L +V KG++ I R VI +E+ + ++ L EG + +V+
Sbjct: 205 GPEEPSYR---DLLQLVEELREIVFKGIEEITRVVIRKEETDNGEEFVLYTEGSDFGEVL 261
Query: 932 ATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM-SIDFRHPMLVADLMT 990
GV + + NN +E+Y+ LG+EAAR T++ E +E G+ ++ RH MLVAD+MT
Sbjct: 262 DIEGVDASRTTCNNIHEIYRELGVEAARETLINETMNTLEEQGLDDVNVRHLMLVADIMT 321
Query: 991 SKGEV 995
++G +
Sbjct: 322 NEGTI 326
Score = 37.4 bits (85), Expect = 0.86, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 40/68 (58%), Gaps = 2/68 (2%)
Query: 637 EGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMN 696
EG +++ + +G L ++ ++ V + + DAA +G+ D + GV+E +I+G P+
Sbjct: 323 EGTIESIGRHGISGSKDSVLARAAFEVTVNHLL--DAAIHGEVDELDGVTENVIVGKPIK 380
Query: 697 VGTGLIKL 704
+GTG + L
Sbjct: 381 LGTGDVNL 388
>sp|P14247|RPOA2_METVS DNA-directed RNA polymerase subunit A'' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA2 PE=3 SV=2
Length = 386
Score = 174 bits (442), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 118/330 (35%), Positives = 173/330 (52%), Gaps = 50/330 (15%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYIEEVF 1155
Y R IEP AVG +AAQSIGEPGTQMT++TFH+AG E+ + +E
Sbjct: 49 YSRTVIEPGEAVGVIAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1156 VPDDSFIL---IKLDMDR------------IRLLHLEVDIDSIRYCIERTRGI----SGH 1196
P S L K D + + + ++ +D + CI + S
Sbjct: 109 TPTMSIYLRGDYKYDRESAAIVSKNIESTTVESVSEDISVDLVNECITIVLDVQQLESRQ 168
Query: 1197 LTVSG-----HSFLILKPKDSSKSFNSK-----MYQMKQLLPSVV---IKGVQGINRAVI 1243
LTV+ S + LK +++ + K + +++ LP V +KGV I R +I
Sbjct: 169 LTVNNVVEAIKSKMKLKIEENENILSLKIKTPSLKALRKRLPKVREIHLKGVPNIKRVII 228
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
+E + +Y L EG NL++V GV K ++NN E+ LG+EAAR+ I+ E+
Sbjct: 229 RKE----IDEYVLYSEGSNLKEVFEIDGVDTTKTTTNNIVEIQDVLGVEAARNAIIREMD 284
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
+ N G+++D RH M+VADLMT+ G V I RHG+ K SVL A+FE T HL+ A+
Sbjct: 285 ATLGNQGLTVDKRHLMMVADLMTTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSAS 344
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
G D +SGV E II+G P+++GTG I +
Sbjct: 345 MRGYVDDLSGVVENIIVGKPISMGTGCINV 374
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/235 (33%), Positives = 124/235 (52%), Gaps = 18/235 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP ++ YL D D + A IV +E TT+ V E I V
Sbjct: 93 GLPRMIEIVDARKEPSTPTMSIYLRGDYKYDRESAAIVSKNIESTTVESVSEDISVDLV- 151
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS-KSF 880
+ I I LD+ ++ L V+ +E + + L LK K S K+
Sbjct: 152 -NECITIVLDVQQLESRQLTVN-----NVVEAIKSKMKLKIEENENILSLKIKTPSLKAL 205
Query: 881 NSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
++ +++++ +KGV I R +I +E + +Y L EG NL++V GV K
Sbjct: 206 RKRLPKVREIH----LKGVPNIKRVIIRKE----IDEYVLYSEGSNLKEVFEIDGVDTTK 257
Query: 941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
++NN E+ LG+EAAR+ I+ E+ + N G+++D RH M+VADLMT+ G V
Sbjct: 258 TTTNNIVEIQDVLGVEAARNAIIREMDATLGNQGLTVDKRHLMMVADLMTTDGVV 312
>sp|C5A207|RPOA2_THEGJ DNA-directed RNA polymerase subunit A'' OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=rpoA2 PE=3 SV=1
Length = 391
Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 111/346 (32%), Positives = 175/346 (50%), Gaps = 58/346 (16%)
Query: 1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIE 1152
E +Y +A +EP +G +AAQSIGEP TQMTL TFH+AG + E ++
Sbjct: 47 EDAVNEYRKALVEPGEPIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVD 106
Query: 1153 EVFVPDDSFILI------KLDMDRIRLL--------------HLEVDIDSIRYCIE---- 1188
P + + + D+++ R + + +DI + + +E
Sbjct: 107 ARKNPSTPVMTVFLDEEHRYDLEKAREVARRIEGTTIENLAREMSIDILNFEFIVEIDPE 166
Query: 1189 --RTRGI--------------SGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI 1232
G+ S G+S LI++PK +K S + ++ + + +
Sbjct: 167 RLEKSGLDMERILKKLSGSFKSAEFEAEGYS-LIVRPKKVTKL--SDLRKLAEKVKKHRL 223
Query: 1233 KGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIE 1292
KG+ G+ + +I +E E Y + EG N + V+ GV + +NN +E+ LGIE
Sbjct: 224 KGLSGVGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPTRTRTNNIWEIADVLGIE 279
Query: 1293 AARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASF 1352
AAR+ I+ EI M G+ +D RH MLVAD+MT G + I RHG+ K SVL A+F
Sbjct: 280 AARNAIIEEIVNTMREQGLEVDIRHIMLVADMMTLDGVIRPIGRHGIVGEKSSVLARAAF 339
Query: 1353 ENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
E T+ HLF+AA G+ D ++GV E +++G P+ VGTG++KL +P
Sbjct: 340 EITTQHLFEAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLTMNLP 385
Score = 115 bits (287), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 132/234 (56%), Gaps = 18/234 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STP++T +LD++ DL+ AR V R+E TT+ + + + +
Sbjct: 97 GLPRIIEIVDARKNPSTPVMTVFLDEEHRYDLEKAREVARRIEGTTIENLAREMS-IDIL 155
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI--SGHLTVSGHSFLILKPKDSSKS 879
+ FI+ ++D RL +D++ I +++ G S G+S LI++PK +K
Sbjct: 156 NFEFIV---EIDPERLEKSGLDMERI---LKKLSGSFKSAEFEAEGYS-LIVRPKKVTKL 208
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
S + ++ + + +KG+ G+ + +I +E E Y + EG N + V+ GV
Sbjct: 209 --SDLRKLAEKVKKHRLKGLSGVGKTIIRKEGDE----YVIYTEGSNFKQVLKVPGVDPT 262
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
+ +NN +E+ LGIEAAR+ I+ EI M G+ +D RH MLVAD+MT G
Sbjct: 263 RTRTNNIWEIADVLGIEAARNAIIEEIVNTMREQGLEVDIRHIMLVADMMTLDG 316
Score = 42.0 bits (97), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 709
F+AA G+ D ++GV E +++G P+ VGTG++KL +P
Sbjct: 347 FEAAERGEVDPLNGVVENVLIGQPVPVGTGIVKLTMNLP 385
>sp|A4FWF5|RPOA2_METM5 DNA-directed RNA polymerase subunit A'' OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rpoA2 PE=3 SV=1
Length = 386
Score = 174 bits (441), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 115/330 (34%), Positives = 170/330 (51%), Gaps = 50/330 (15%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCE------ 1149
Y R +EP AVG +AAQSIGEPGTQMT++TFH+AG E+ +
Sbjct: 49 YERTLVEPGEAVGVVAAQSIGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1150 ------YIEEVFVPD---DSFILIKLDMDRIRLLHLEVDIDSIRYCIE--------RTRG 1192
Y+ + F D S + ++ + + ++ +D + CI +RG
Sbjct: 109 TPTMTIYLNDEFKGDREKASMVAKNIESTNVESVSEDISVDLVNECITIILNSQQLESRG 168
Query: 1193 ISGHLTVSG-HSFLILKPKDSSKSFNSK-----MYQMKQLLPSVV---IKGVQGINRAVI 1243
++ + S + LK D N K + +++ LP V +KGVQ I R +I
Sbjct: 169 LTVPDVIEAIKSKMKLKIDDHENVLNLKIKTPSLKALRKRLPKVRAIHLKGVQNIKRVII 228
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
+E V +Y L EG N+++V GV K ++NN E+ LGIEAAR+ I+ E+
Sbjct: 229 RKE----VDEYILYSEGSNIKEVFDIEGVDTTKTTTNNIVEIQDVLGIEAARNAIIYEMD 284
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
+ N G+++D RH M+VADLM + G V I RHG+ K SVL A+FE T HL+ A+
Sbjct: 285 ATLGNQGLTVDKRHLMMVADLMCTDGVVKPIGRHGIGGEKASVLARAAFEETVKHLYSAS 344
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
G D + GV E II+G P+ +GTG I +
Sbjct: 345 MRGYVDELGGVVENIIVGKPIAMGTGCIDI 374
Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A + STP +T YL+ + D + A +V +E T + V E I V
Sbjct: 93 GLPRMIEIVDARKEPSTPTMTIYLNDEFKGDREKASMVAKNIESTNVESVSEDISVDLVN 152
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGH-SFLILKPKDSS-KS 879
+ I++ R L + I++I+ ++ L + H + L LK K S K+
Sbjct: 153 ECITIILNSQQLESRGLTVPDVIEAIKSKMK--------LKIDDHENVLNLKIKTPSLKA 204
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
++ +++ ++ +KGVQ I R +I +E V +Y L EG N+++V GV
Sbjct: 205 LRKRLPKVR----AIHLKGVQNIKRVIIRKE----VDEYILYSEGSNIKEVFDIEGVDTT 256
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K ++NN E+ LGIEAAR+ I+ E+ + N G+++D RH M+VADLM + G V
Sbjct: 257 KTTTNNIVEIQDVLGIEAARNAIIYEMDATLGNQGLTVDKRHLMMVADLMCTDGVV 312
>sp|P29158|RPOA2_THECE DNA-directed RNA polymerase subunit A'' OS=Thermococcus celer
GN=rpoA2 PE=3 SV=2
Length = 393
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 114/342 (33%), Positives = 174/342 (50%), Gaps = 56/342 (16%)
Query: 1108 EKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFV 1156
++Y +A IEP A+G +AAQSIGEP TQMTL TFH+AG + E ++
Sbjct: 51 KEYQKALIEPGEAIGTVAAQSIGEPSTQMTLNTFHYAGVAEINVTLGLPRIIEIVDARKN 110
Query: 1157 PDDSFILIKLDMD-------------RIRLLHLE-------VDIDSIRYCIE------RT 1190
P + + LD + RI LE +DI + + +E
Sbjct: 111 PSTPIMTVYLDEEHRYDREKALEVARRIEGTSLENLARETTIDILNFEFIVEIDPERLEK 170
Query: 1191 RGI--------------SGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQ 1236
G+ S V G++ +I++PK K S + ++ + + +KG+
Sbjct: 171 AGLDMERIQRKLESSFKSAEFEVDGYT-VIMRPKKVGKI--SSLRRLAEKVKKHRLKGLS 227
Query: 1237 GINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARS 1296
+ + VI ++ G +Y + EG N + V+ GV + +N+ E+ + LGIEAAR+
Sbjct: 228 RVGKTVITKDSKTG--EYIIRTEGSNFKQVLKVPGVDPTRTRTNDIREIAEVLGIEAARN 285
Query: 1297 TIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTS 1356
I+ EI ME G+ +D RH MLVAD+MT G + I RHG+ K SVL A+FE T+
Sbjct: 286 AIIDEILKTMEEQGLEVDVRHIMLVADMMTLDGVIRPIGRHGIVGEKASVLARAAFEITT 345
Query: 1357 DHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 1398
HLF+AA G D ++GV E +++G P+ VGTG +KL +P
Sbjct: 346 QHLFEAAERGAVDPLNGVVENVLIGQPVPVGTGTVKLAMNLP 387
Score = 108 bits (271), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 130/232 (56%), Gaps = 12/232 (5%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PRI EI++A +N STPI+T YLD++ D + A V R+E T+L + E +
Sbjct: 97 GLPRIIEIVDARKNPSTPIMTVYLDEEHRYDREKALEVARRIEGTSLENLAR---ETTID 153
Query: 822 DDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
+F I +++D RL +D++ I+ +E + S V G++ +I++PK K
Sbjct: 154 ILNFEFI-VEIDPERLEKAGLDMERIQRKLESSFK-SAEFEVDGYT-VIMRPKKVGKI-- 208
Query: 882 SKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKC 941
S + ++ + + +KG+ + + VI ++ G +Y + EG N + V+ GV +
Sbjct: 209 SSLRRLAEKVKKHRLKGLSRVGKTVITKDSKTG--EYIIRTEGSNFKQVLKVPGVDPTRT 266
Query: 942 SSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
+N+ E+ + LGIEAAR+ I+ EI ME G+ +D RH MLVAD+MT G
Sbjct: 267 RTNDIREIAEVLGIEAARNAIIDEILKTMEEQGLEVDVRHIMLVADMMTLDG 318
Score = 39.7 bits (91), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVP 709
F+AA G D ++GV E +++G P+ VGTG +KL +P
Sbjct: 349 FEAAERGAVDPLNGVVENVLIGQPVPVGTGTVKLAMNLP 387
>sp|P0CX07|RPOA2_HALSA DNA-directed RNA polymerase subunit A'' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA2 PE=3
SV=1
Length = 397
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 61/372 (16%)
Query: 1077 LREQILSHQDKIGHGR-ESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQ 1135
L++++L+ ++ G + ++N +A +A +Y+ +++P VG ++AQSIGEPGTQ
Sbjct: 23 LKDEVLATAEERGVTKSQANEIATAVEA-----QYLDTRVDPLDPVGTVSAQSIGEPGTQ 77
Query: 1136 MTLKTFHFAG-----------EVCEYIE----------EVFVPDD--------------- 1159
MT+ TFH+AG + E ++ EV++ D+
Sbjct: 78 MTMNTFHYAGVAEMDVTQGLPRLIELVDARKTPDTPVMEVYLEDEYAEERERAHEVVWKI 137
Query: 1160 ---------------SFILIKLDMDRIRLLHLEVDIDSI-RYCIERTRGISGHLTVS-GH 1202
+ +++++D++ L +DS + E I G+L V+
Sbjct: 138 EATKILALGDISTNVADMVVRIDLNEDTLQERWPRVDSTTQIAGEVAETIEGNLGVTVTQ 197
Query: 1203 SFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDN 1262
IL+ S S+ ++ Q+ + L +V KG++ ++R VI E+ E ++ L EG
Sbjct: 198 DGTILEFGPSEPSYR-ELLQLVEQLRDIVFKGIEEVSRVVIRREETERGEEFVLYTEGSA 256
Query: 1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMS-IDFRHPMLV 1321
+ + GV + S NN +EV+KTLGIEAAR I+ E +E G+ ++ RH MLV
Sbjct: 257 FKKALKIEGVDATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLV 316
Query: 1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
AD+MT+ G + I RHG++ K SVL A+FE T +HL DAA +G++D + GV E +I+G
Sbjct: 317 ADIMTNDGTIESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVG 376
Query: 1382 LPMNVGTGLIKL 1393
P+ +GTG + L
Sbjct: 377 KPVRLGTGDVDL 388
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERT---TLGEVCEYIEEV 818
G+PR+ E+++A + TP++ YL+ + + + A V ++E T LG++ +
Sbjct: 96 GLPRLIELVDARKTPDTPVMEVYLEDEYAEERERAHEVVWKIEATKILALGDISTNVA-- 153
Query: 819 FVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVS-GHSFLILKPKDSS 877
D + I L+ D ++ VD + + E I G+L V+ IL+ S
Sbjct: 154 ----DMVVRIDLNEDTLQERWPRVD-STTQIAGEVAETIEGNLGVTVTQDGTILEFGPSE 208
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
S+ ++ Q+ + L +V KG++ ++R VI E+ E ++ L EG + + GV
Sbjct: 209 PSYR-ELLQLVEQLRDIVFKGIEEVSRVVIRREETERGEEFVLYTEGSAFKKALKIEGVD 267
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM-SIDFRHPMLVADLMTSKGEV 995
+ S NN +EV+KTLGIEAAR I+ E +E G+ ++ RH MLVAD+MT+ G +
Sbjct: 268 ATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTI 326
Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 704
DAA +G++D + GV E +I+G P+ +GTG + L
Sbjct: 355 LDAAIHGESDDLDGVIENVIVGKPVRLGTGDVDL 388
>sp|B0R8D3|RPOA2_HALS3 DNA-directed RNA polymerase subunit A'' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA2 PE=1 SV=1
Length = 397
Score = 169 bits (429), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 116/372 (31%), Positives = 195/372 (52%), Gaps = 61/372 (16%)
Query: 1077 LREQILSHQDKIGHGR-ESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQ 1135
L++++L+ ++ G + ++N +A +A +Y+ +++P VG ++AQSIGEPGTQ
Sbjct: 23 LKDEVLATAEERGVTKSQANEIATAVEA-----QYLDTRVDPLDPVGTVSAQSIGEPGTQ 77
Query: 1136 MTLKTFHFAG-----------EVCEYIE----------EVFVPDD--------------- 1159
MT+ TFH+AG + E ++ EV++ D+
Sbjct: 78 MTMNTFHYAGVAEMDVTQGLPRLIELVDARKTPDTPVMEVYLEDEYAEERERAHEVVWKI 137
Query: 1160 ---------------SFILIKLDMDRIRLLHLEVDIDSI-RYCIERTRGISGHLTVS-GH 1202
+ +++++D++ L +DS + E I G+L V+
Sbjct: 138 EATKILALGDISTNVADMVVRIDLNEDTLQERWPRVDSTTQIAGEVAETIEGNLGVTVTQ 197
Query: 1203 SFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDN 1262
IL+ S S+ ++ Q+ + L +V KG++ ++R VI E+ E ++ L EG
Sbjct: 198 DGTILEFGPSEPSYR-ELLQLVEQLRDIVFKGIEEVSRVVIRREETERGEEFVLYTEGSA 256
Query: 1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMS-IDFRHPMLV 1321
+ + GV + S NN +EV+KTLGIEAAR I+ E +E G+ ++ RH MLV
Sbjct: 257 FKKALKIEGVDATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLV 316
Query: 1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
AD+MT+ G + I RHG++ K SVL A+FE T +HL DAA +G++D + GV E +I+G
Sbjct: 317 ADIMTNDGTIESIGRHGISGNKNSVLARAAFEVTVNHLLDAAIHGESDDLDGVIENVIVG 376
Query: 1382 LPMNVGTGLIKL 1393
P+ +GTG + L
Sbjct: 377 KPVRLGTGDVDL 388
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 125/239 (52%), Gaps = 15/239 (6%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERT---TLGEVCEYIEEV 818
G+PR+ E+++A + TP++ YL+ + + + A V ++E T LG++ +
Sbjct: 96 GLPRLIELVDARKTPDTPVMEVYLEDEYAEERERAHEVVWKIEATKILALGDISTNVA-- 153
Query: 819 FVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVS-GHSFLILKPKDSS 877
D + I L+ D ++ VD + + E I G+L V+ IL+ S
Sbjct: 154 ----DMVVRIDLNEDTLQERWPRVD-STTQIAGEVAETIEGNLGVTVTQDGTILEFGPSE 208
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
S+ ++ Q+ + L +V KG++ ++R VI E+ E ++ L EG + + GV
Sbjct: 209 PSYR-ELLQLVEQLRDIVFKGIEEVSRVVIRREETERGEEFVLYTEGSAFKKALKIEGVD 267
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM-SIDFRHPMLVADLMTSKGEV 995
+ S NN +EV+KTLGIEAAR I+ E +E G+ ++ RH MLVAD+MT+ G +
Sbjct: 268 ATRTSCNNIHEVHKTLGIEAAREAIINETMTTLEEQGLDDVNIRHLMLVADIMTNDGTI 326
Score = 37.7 bits (86), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 704
DAA +G++D + GV E +I+G P+ +GTG + L
Sbjct: 355 LDAAIHGESDDLDGVIENVIVGKPVRLGTGDVDL 388
>sp|A6UV49|RPOA2_META3 DNA-directed RNA polymerase subunit A'' OS=Methanococcus aeolicus
(strain Nankai-3 / ATCC BAA-1280) GN=rpoA2 PE=3 SV=1
Length = 397
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 111/332 (33%), Positives = 174/332 (52%), Gaps = 56/332 (16%)
Query: 1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYIEEVF 1155
Y R +EP +VG +AAQS+GEPGTQMT++TFH+AG E+ + +E
Sbjct: 49 YERTLVEPNESVGVVAAQSLGEPGTQMTMRTFHYAGVAELNVTLGLPRMIEIVDARKEPS 108
Query: 1156 VPDDSFIL-------------IKLDMDRIRLLHL--EVDIDSIRYCIE--------RTRG 1192
P + L + +++ I + ++ ++ ID ++ I + R
Sbjct: 109 TPTMTVYLTEDYAFDKSKAEEVAKNIESITVQNIAQDIHIDMVKLAINVVLNPESMKQRN 168
Query: 1193 ISG-------------HLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGIN 1239
I+ + G+ ++ S K+ ++ ++K S+ +KGV I
Sbjct: 169 ITADDVMEAIKKKMKLKIEQEGNILRLIIKTPSLKALRKRIPKVK----SIHLKGVPNIP 224
Query: 1240 RAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIM 1299
R ++ ++D G +Y L EG NL V GV V+ +SNN E+ LGIEAAR+ I+
Sbjct: 225 RVIVKKDDTMG--EYILHSEGSNLSAVFEIDGVDMVRTTSNNIVEIQDVLGIEAARNAII 282
Query: 1300 TEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHL 1359
EI V+ G+++D RH M++AD+MT+ G V I RHGL+ K SVL A+FE T HL
Sbjct: 283 NEISGVLNQQGLNVDIRHLMVIADIMTADGSVKSIGRHGLSGEKASVLARAAFEETVKHL 342
Query: 1360 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLI 1391
+ AA G +D +SGV E II+G P+++GTG +
Sbjct: 343 YSAAEKGHSDKLSGVVENIIVGKPISMGTGCV 374
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP-- 821
G+PR+ EI++A + STP +T YL +D YA +++ EV + IE + V
Sbjct: 93 GLPRMIEIVDARKEPSTPTMTVYLTED----YA------FDKSKAEEVAKNIESITVQNI 142
Query: 822 --DDSFILIKLDMDRI----RLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKD 875
D ++KL ++ + + + D + I++ + + G+ ++
Sbjct: 143 AQDIHIDMVKLAINVVLNPESMKQRNITADDVMEAIKKKMKLK--IEQEGNILRLIIKTP 200
Query: 876 SSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYG 935
S K+ ++ ++K S+ +KGV I R ++ ++D G +Y L EG NL V G
Sbjct: 201 SLKALRKRIPKVK----SIHLKGVPNIPRVIVKKDDTMG--EYILHSEGSNLSAVFEIDG 254
Query: 936 VKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
V V+ +SNN E+ LGIEAAR+ I+ EI V+ G+++D RH M++AD+MT+ G V
Sbjct: 255 VDMVRTTSNNIVEIQDVLGIEAARNAIINEISGVLNQQGLNVDIRHLMVIADIMTADGSV 314
>sp|C3N7Q1|RPOA2_SULIY DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.G.57.14 / Yellowstone #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|C3NFS2|RPOA2_SULIN DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain Y.N.15.51 / Yellowstone #2) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|C3MYA0|RPOA2_SULIM DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.14.25 / Kamchatka #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|C3MRK4|RPOA2_SULIL DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain L.S.2.15 / Lassen #1) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|C4KIV9|RPOA2_SULIK DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.16.4 / Kamchatka #3) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|C3MZM9|RPOA2_SULIA DNA-directed RNA polymerase subunit A'' OS=Sulfolobus islandicus
(strain M.16.27) GN=rpoA2 PE=3 SV=1
Length = 392
Score = 169 bits (427), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 123/392 (31%), Positives = 187/392 (47%), Gaps = 65/392 (16%)
Query: 1054 KKFLEEFSKKESVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
K +LEE K+ S Q K+ + L+ I + + + F A K +Y
Sbjct: 7 KSYLEEKVKQASNILPQ-KIVEDLKNLISNKEVLVTRDEIDKIFDLAIK------EYSEG 59
Query: 1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFI 1162
I P A+G +AAQS+GEPGTQMTL+TFHFAG + E ++ VP +
Sbjct: 60 LIAPGEAIGIVAAQSVGEPGTQMTLRTFHFAGIRELNVTLGLPRLIEIVDAKKVPSTPMM 119
Query: 1163 LI------------------KLDMDRIR---------------LLHLE--------VDID 1181
I KL+ +I +L L+ V +D
Sbjct: 120 TIYLTDEYKHDKEKALEVARKLEYTKIENVVSSTSIDIASMSIILQLDNEMLKDKGVTVD 179
Query: 1182 SIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRA 1241
++ I R + G + L ++ + +++++ + + IKG++GI RA
Sbjct: 180 DVKKAINRLK--LGEFVIDESEGNTLNISFANIDSIAALFKLRDKILNTKIKGIKGIKRA 237
Query: 1242 VIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTE 1301
++ ++ E Y +L +G NL V++ GV K +NN E+ + GIEAAR I+ E
Sbjct: 238 IVQKKGDE----YIILTDGSNLSGVLSVKGVDIAKVETNNIREIEEVFGIEAAREIIIRE 293
Query: 1302 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
I V+ G+ +D RH +LVAD+MT G V I RHG+ K SVL A+FE T HL D
Sbjct: 294 ISKVLAEQGLDVDMRHILLVADVMTRTGVVRQIGRHGVTGEKNSVLARAAFEVTVKHLLD 353
Query: 1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
AA G + GV E II+G P+ +GTG+++L
Sbjct: 354 AAARGDVEEFKGVVENIIIGHPIKLGTGMVEL 385
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 122/238 (51%), Gaps = 20/238 (8%)
Query: 764 GVPRIKEIINASRNISTPIITAYL------DKDTDLDYARIVKGRLERTTLGEVCEYIEE 817
G+PR+ EI++A + STP++T YL DK+ L+ AR +LE T + V
Sbjct: 100 GLPRLIEIVDAKKVPSTPMMTIYLTDEYKHDKEKALEVAR----KLEYTKIENVVSSTS- 154
Query: 818 VFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSS 877
D + + I L +D L V +D ++ I R + G + L ++
Sbjct: 155 ---IDIASMSIILQLDNEMLKDKGVTVDDVKKAINRLK--LGEFVIDESEGNTLNISFAN 209
Query: 878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVK 937
+ +++++ + + IKG++GI RA++ ++ E Y +L +G NL V++ GV
Sbjct: 210 IDSIAALFKLRDKILNTKIKGIKGIKRAIVQKKGDE----YIILTDGSNLSGVLSVKGVD 265
Query: 938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
K +NN E+ + GIEAAR I+ EI V+ G+ +D RH +LVAD+MT G V
Sbjct: 266 IAKVETNNIREIEEVFGIEAAREIIIREISKVLAEQGLDVDMRHILLVADVMTRTGVV 323
Score = 36.6 bits (83), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 636 REGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPM 695
R G+V + TG L ++ ++ V++ DAA G + GV E II+G P+
Sbjct: 319 RTGVVRQIGRHGVTGEKNSVLARAAFEVTVKH--LLDAAARGDVEEFKGVVENIIIGHPI 376
Query: 696 NVGTGLIKL 704
+GTG+++L
Sbjct: 377 KLGTGMVEL 385
>sp|Q03586|RPOA2_THEAC DNA-directed RNA polymerase subunit A'' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA2 PE=1 SV=1
Length = 508
Score = 167 bits (423), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 59/331 (17%)
Query: 1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFIL 1163
I+P AVG +AAQSIGEPGTQMT++TFHFAG + E ++ +P +
Sbjct: 177 IDPYEAVGIIAAQSIGEPGTQMTMRTFHFAGVREMNVTLGLPRLIEIVDARRIPSTPSMT 236
Query: 1164 IKLD----------MDRIRLLHLE------------------------------VDIDSI 1183
I L MD ++ L ++++ I
Sbjct: 237 IYLRPEYETNDEVVMDVVKRLENTSISDVADIITDIGELTVTVRPDPRKTKDRLIEMEDI 296
Query: 1184 RYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVI 1243
I + +GI+ + SG +I+KP+ +SF K+Y +++ + + IKG+ GI RA+
Sbjct: 297 MNAISKIKGIT-VMEDSGQ--IIIKPQ--QESFK-KLYLLQEQIKGLTIKGISGIKRAIA 350
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
E E ++ + +G NL+DV+ V + +N+ E+ LGIEAAR+ I+ E
Sbjct: 351 RVEGKE--HRWVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIANVLGIEAARNAILNEAL 408
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
++ G+++D RH MLVAD+MT G V + R G++ K SVL A+FE T+ HL A
Sbjct: 409 RTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAG 468
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
G+ D ++GV+E II+G P+ +GTG + ++
Sbjct: 469 IMGEVDKLAGVAENIIVGQPITLGTGAVDII 499
Score = 108 bits (269), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 78/240 (32%), Positives = 134/240 (55%), Gaps = 19/240 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A R STP +T YL + +T+ + V RLE T++ +V + I ++
Sbjct: 216 GLPRLIEIVDARRIPSTPSMTIYLRPEYETNDEVVMDVVKRLENTSISDVADIITDI--- 272
Query: 822 DDSFILIKLDMDRI--RLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKS 879
+ + ++ D + RL+ +E I I + +GI+ + SG +I+KP+ +S
Sbjct: 273 GELTVTVRPDPRKTKDRLIEME----DIMNAISKIKGIT-VMEDSGQ--IIIKPQ--QES 323
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
F K+Y +++ + + IKG+ GI RA+ E E ++ + +G NL+DV+ V
Sbjct: 324 FK-KLYLLQEQIKGLTIKGISGIKRAIARVEGKE--HRWVIYTQGSNLKDVLEVDEVDPT 380
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG 999
+ +N+ E+ LGIEAAR+ I+ E ++ G+++D RH MLVAD+MT G V G
Sbjct: 381 RTYTNDIVEIANVLGIEAARNAILNEALRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVG 440
>sp|Q979F5|RPOA2_THEVO DNA-directed RNA polymerase subunit A'' OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rpoA2 PE=3 SV=1
Length = 508
Score = 167 bits (422), Expect = 7e-40, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 174/331 (52%), Gaps = 59/331 (17%)
Query: 1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG-----------EVCEYIEEVFVPDDSFIL 1163
I+P AVG +AAQSIGEPGTQMT++TFHFAG + E ++ +P +
Sbjct: 177 IDPYEAVGIIAAQSIGEPGTQMTMRTFHFAGVREMNVTLGLPRLIEIVDARRIPSTPSMT 236
Query: 1164 IKLD----------MDRIRLLH---------LEVDI---------------------DSI 1183
I L MD ++ L + DI D +
Sbjct: 237 IYLKPEFETNDEVVMDVVKRLENTSVSDVADIITDIGELTITVRPDPNKMNDRLINQDDL 296
Query: 1184 RYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVI 1243
I + +G++ + SG +I+KP+ +SF K+Y +++ + ++ IKG+ GI RA+
Sbjct: 297 VNAIYKVKGVT-VMEESGQ--IIVKPQ--QESFK-KLYLLQEQIKALPIKGISGIKRAIA 350
Query: 1244 HEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIK 1303
E E ++ + +G NL+DV+ V + +N+ E+ LGIEAAR+ I+ E +
Sbjct: 351 RVEGKE--HRWVIYTQGSNLKDVLEVDEVDPTRTYTNDIVEIATVLGIEAARNAILNEAQ 408
Query: 1304 LVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
++ G+++D RH MLVAD+MT G V + R G++ K SVL A+FE T+ HL A
Sbjct: 409 RTLQEQGLNVDVRHLMLVADMMTFSGSVRAVGRTGISGRKSSVLARAAFEITTKHLLRAG 468
Query: 1364 FYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
G+ D ++GV+E II+G P+ +GTG + ++
Sbjct: 469 IMGEVDKLAGVAENIIVGQPITLGTGAVDII 499
Score = 107 bits (267), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 77/240 (32%), Positives = 138/240 (57%), Gaps = 19/240 (7%)
Query: 764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
G+PR+ EI++A R STP +T YL + +T+ + V RLE T++ +V + I ++
Sbjct: 216 GLPRLIEIVDARRIPSTPSMTIYLKPEFETNDEVVMDVVKRLENTSVSDVADIITDI--- 272
Query: 822 DDSFILIKLDMDRI--RLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKS 879
+ I ++ D +++ RL++ D + I + +G++ + SG +I+KP+ +S
Sbjct: 273 GELTITVRPDPNKMNDRLINQ----DDLVNAIYKVKGVT-VMEESGQ--IIVKPQ--QES 323
Query: 880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
F K+Y +++ + ++ IKG+ GI RA+ E E ++ + +G NL+DV+ V
Sbjct: 324 FK-KLYLLQEQIKALPIKGISGIKRAIARVEGKE--HRWVIYTQGSNLKDVLEVDEVDPT 380
Query: 940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG 999
+ +N+ E+ LGIEAAR+ I+ E + ++ G+++D RH MLVAD+MT G V G
Sbjct: 381 RTYTNDIVEIATVLGIEAARNAILNEAQRTLQEQGLNVDVRHLMLVADMMTFSGSVRAVG 440
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 165 bits (418), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/268 (35%), Positives = 147/268 (54%), Gaps = 38/268 (14%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D+VLFNRQPSLH++S+MAH+ +VLP++TFR N CVC PYNADFDGDEMN+H+ QTEE+
Sbjct: 408 DGDIVLFNRQPSLHRMSMMAHQVRVLPYKTFRLNLCVCPPYNADFDGDEMNMHVFQTEES 467
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAE AK LM + ++++PR G +I D I+G YLLT+K+A F+
Sbjct: 468 RAE--------------AKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSE 513
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
+ +I D G WTGK+IFS++L + +
Sbjct: 514 EKVFQILKKAGLPLPDSRG-------------------RDWTGKEIFSMVLPDDLNMVYR 554
Query: 521 ANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGS-GGKANVFYILLRDFGED 579
A + K E C D+YV++ N +L++G +D+ G+ GK + +++++G D
Sbjct: 555 AEVCRK--CEECLEMECENDAYVVIENGQLISGVIDEKAYGAFAGK--ILDHIVKEYGTD 610
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
A + +++ +M+ GF+ D
Sbjct: 611 AAREFLDSATKLAIAGIMHAGFTTSTND 638
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 44/250 (17%)
Query: 85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
G ++ ED +++ S QIV+ + Y +D PI +GL+D R+G C TCG +C
Sbjct: 14 GLMSPED-IRKMSVTQIVTPDTYDEDG--YPIENGLMDPRLGVIDPSLRCRTCGAKGGEC 70
Query: 145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYL 204
GHFG I+L PV H+G+ + IL+S C+ C RVLL E + +R ++ +
Sbjct: 71 PGHFGSINLARPVIHVGFADTIHKILRSTCRK--CGRVLLTETEIEEYRQRILDAMEKEE 128
Query: 205 VRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEY 264
+ K+I ++ CPHC E E+ + + K +IVE +Y
Sbjct: 129 SLTPIIKEIYAEARR-DKCPHCEE---------------EQEEIKLDKPVSIVE---GDY 169
Query: 265 NEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLL 324
L P EV + E I +D +L +N E+++P ++LT L
Sbjct: 170 K--------------------LTPSEVRERLERISDDDALILGVNPEVARPEWMVLTVLP 209
Query: 325 VPPNCIRPSV 334
VPP +RPS+
Sbjct: 210 VPPVTVRPSI 219
Score = 87.4 bits (215), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 37/54 (68%), Positives = 46/54 (85%)
Query: 612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
+GFV +S+ GL P EFFFH MGGREGLVDTA++TA++GYMQRRLV +L+DL V
Sbjct: 768 RGFVHSSYKEGLDPIEFFFHAMGGREGLVDTAIRTAQSGYMQRRLVNALQDLTV 821
Score = 40.0 bits (92), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 15 TRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
+R + LM + ++++PR G +I D I+G YLLT+K+A F+ + +I
Sbjct: 467 SRAEAKTLMRVQEHILSPRFGGPIIGGIHDHISGAYLLTRKSAVFSEEKVFQI 519
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 163 bits (413), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 148/272 (54%), Gaps = 40/272 (14%)
Query: 340 SDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
+D DVV+FNRQPSLHK+S+M HR KV+P+ TFR N V +PYNADFDGDEMN+H+PQT E
Sbjct: 442 NDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLE 501
Query: 400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
RAE + +++M + +V+P++ ++ QD + G L T+++ F
Sbjct: 502 TRAEVI-------------EIMMVPRQ-IVSPQSNRPVMGIVQDTLLGSRLFTKRDCFME 547
Query: 460 RAQTMRIASTLIADTSDICGIIKRFSWRSWN----PVVFVRTAVIWTGKQIFSLILKPNR 515
+ M I L SW+ P ++ +WTGKQ+FSLI+ P+
Sbjct: 548 KDLVMNILMWL----------------PSWDGKVPPPAILKPKQLWTGKQLFSLII-PD- 589
Query: 516 DCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRD 575
+N T E D+ VI+ ELLAG + K +LG+ ++ ++++ +
Sbjct: 590 ---INLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAAN-GSIIHVVMNE 645
Query: 576 FGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
G D + + + + +L+NRGF++GIGD
Sbjct: 646 HGHDTCRLFIDQTQTVVNHWLINRGFTMGIGD 677
Score = 118 bits (296), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/319 (27%), Positives = 166/319 (52%), Gaps = 36/319 (11%)
Query: 1107 REKYVRAQIEPATAVGALAAQSIG-EPGTQMTLKTFHFAGEVCEYIEEVF-VPDD----- 1159
R K V++Q+E T +A I +P Q T+ E E++ F +PD+
Sbjct: 1149 RAKIVKSQLEYTTLANVTSATEIYYDPDPQNTI-----ISEDAEFVNSYFELPDEEIDVH 1203
Query: 1160 --SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK-----PK 1210
S L+++++DR + ++ + I C+ R G+S + S + LIL+ +
Sbjct: 1204 SMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQ 1263
Query: 1211 DSSKSFNSKMYQM-----KQLLPSVVIKGVQGINRAVIHEED-VEGVTK---------YK 1255
++ + N Q +L +V++G++GI + + +D + VT+ +
Sbjct: 1264 ETKGTDNDDDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWI 1323
Query: 1256 LLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDF 1315
L +G +L +VM+ V + +SN+ E+ + LGIEA R+ ++ E++ V+ G +++
Sbjct: 1324 LDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNY 1383
Query: 1316 RHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVS 1375
RH ++AD+MT +G ++ ITRHG+ +++ L SFE T + L DAA + +TD + GV+
Sbjct: 1384 RHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVT 1443
Query: 1376 ECIIMGLPMNVGTGLIKLL 1394
E II+G +GTG ++
Sbjct: 1444 ENIILGQLPPLGTGSFEVF 1462
Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 41/59 (69%), Positives = 53/59 (89%)
Query: 612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
+GFV+NS+ GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK++ED+ ++YD +
Sbjct: 806 RGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDAT 864
Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 52/286 (18%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
GVPR+KEIIN ++ + TP +T YL D+D A+IVK +LE TTL V E + P
Sbjct: 1116 GVPRLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDP 1175
Query: 822 DDSFILIKLDMDRIR------------------LLHLEVD----------IDSIRYCIER 853
D +I D + + LL +E+D + I C+ R
Sbjct: 1176 DPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVR 1235
Query: 854 TRGISGHLTVSGHSF--LILK-----PKDSSKSFNSKMYQM-----KQLLPSVVIKGVQG 901
G+S + S + LIL+ +++ + N Q +L +V++G++G
Sbjct: 1236 DFGLSLNCIFSDDNAEKLILRIRMVESQETKGTDNDDDDQFLRRIESNMLSEMVLRGIKG 1295
Query: 902 INRAVIHEED-VEGVTK---------YKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYK 951
I + + +D + VT+ + L +G +L +VM+ V + +SN+ E+ +
Sbjct: 1296 IKKVFMRTDDKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQ 1355
Query: 952 TLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
LGIEA R+ ++ E++ V+ G +++RH ++AD+MT +G ++
Sbjct: 1356 VLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMA 1401
Score = 73.9 bits (180), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 61/116 (52%), Gaps = 12/116 (10%)
Query: 115 PIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSIC 174
P GLLD MGT K C TC +++C GHFG+I+L PVFHIG+ V+ IL+ +C
Sbjct: 47 PKAGGLLDPAMGTIDKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVC 106
Query: 175 KNPTCARVLLGEEKAAGFRA--KLRNPALSYLVRKSLKKKILETTKKVSVCPHCGE 228
+ C++ LL + FR K+RN +K +++ K VC GE
Sbjct: 107 YH--CSK-LLTDTNEHSFRQALKIRN-------QKHRLNAVVDCCKNKKVCAIGGE 152
Score = 57.8 bits (138), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 48/88 (54%), Gaps = 17/88 (19%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG--------------EVCEYIEEV 1154
K+++A P VGALAAQSIGEP TQMTL TFH+AG E+ ++V
Sbjct: 1071 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQV 1130
Query: 1155 FVPDDSFIL---IKLDMDRIRLLHLEVD 1179
P + L + DMDR +++ +++
Sbjct: 1131 KTPSLTIYLKPHMARDMDRAKIVKSQLE 1158
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 162 bits (411), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 148/271 (54%), Gaps = 29/271 (10%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D D+VLFNRQPSLH++S+MAHR +VL TFR N VC PYNADFDGDEMN+H+PQ+EEA
Sbjct: 413 DGDIVLFNRQPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEA 472
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
AE AK +M N++TPR G +I A QD+I+G YLLT K +
Sbjct: 473 IAE--------------AKEIMLVHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTK 518
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
+ +I +AD G + R + +TGKQ+ S L + +
Sbjct: 519 EEAQQILG--VADVKIDLGEPAILAPREY-----------YTGKQVISAFLPKDFNFHGQ 565
Query: 521 ANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDV 580
AN+ + R E C DSYV+++N LL G DK +G+ ++ + L++++ ++
Sbjct: 566 ANVSSGPR--LCKNEDCPHDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEY 623
Query: 581 AVTAMWRLSRMTSFYLMNRGFSIGIGDVTPG 611
M L R+ ++ +GF++ + DV+ G
Sbjct: 624 GKWLMDNLFRVFIRFVELQGFTMRLEDVSLG 654
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/261 (28%), Positives = 127/261 (48%), Gaps = 49/261 (18%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
D +++ S I++ ++Y +D TPI ++D R+G + C TCG L +C GHFG+
Sbjct: 17 DEIRKMSVTAIITPDVYDED--GTPIEGSVMDPRLGVIEPGQKCPTCGNTLGNCPGHFGH 74
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRA-----KLRNPALSYLV 205
I+L PV H+G + + L++ C+ C RV + E++ + K R P+ + +
Sbjct: 75 IELVRPVIHVGLVKHIYEFLKATCRR--CGRVKISEDEIEKYSRIYNAIKKRWPSAARRL 132
Query: 206 RKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYN 265
+ +KK T K VCPHC E ++YK + +K E+
Sbjct: 133 TEYVKK----TAMKAQVCPHCNE---------------KQYKIKLEKPYNFYEE------ 167
Query: 266 EAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLV 325
+K G + L P ++ + E IP D+ +L + S+P +ILT L V
Sbjct: 168 ------------RKEG-VAKLTPSDIRERLEKIPDSDVEILGYDPTTSRPEWMILTVLPV 214
Query: 326 PPNCIRPSVI--SDLKSDNDV 344
PP IRPS++ S +++++D+
Sbjct: 215 PPITIRPSIMIESGIRAEDDL 235
Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 56/73 (76%), Gaps = 2/73 (2%)
Query: 607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
D++P +GF+ +SF +GL PTE FFH GGREGLVDTAV+T+++GYMQRRL+ +L DL
Sbjct: 773 DISPEARGFIYSSFRTGLKPTELFFHAAGGREGLVDTAVRTSQSGYMQRRLINALSDLRA 832
Query: 666 QYDMSFDAAFYGQ 678
+YD + + YG+
Sbjct: 833 EYDGTV-RSLYGE 844
Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Query: 20 QVLMANKSNLVTPRNGELLIAATQDFITGGY 50
++++ +K N++TPR G +I A QD+I+G Y
Sbjct: 478 EIMLVHK-NIITPRYGGPIIGAAQDYISGAY 507
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 160 bits (405), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 94/268 (35%), Positives = 149/268 (55%), Gaps = 38/268 (14%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
D DVV+FNRQPSLHK+S+M HR +V+P+ TFR N V +PYNADFDGDEMN+H+PQ+EE
Sbjct: 444 DGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEET 503
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAE ++ M K +V+P++ + ++ QD + G + ++ F R
Sbjct: 504 RAEI-------------QEITMVPK-QIVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR 549
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
M I + D GI+ P V ++ V+WTGKQI SLI+ P
Sbjct: 550 NAVMNI----MLWVPDWDGILP--------PPVILKPKVLWTGKQILSLII------PKG 591
Query: 521 ANL-KTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
NL + + +N DS +++ N E++ G +DK T+G+ + + + + ++ G +
Sbjct: 592 INLIRDDDKQSLSNPT----DSGMLIENGEIIYGVVDKKTVGA-SQGGLVHTIWKEKGPE 646
Query: 580 VAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
+ + R+ +++L++ GFSIGIGD
Sbjct: 647 ICKGFFNGIQRVVNYWLLHNGFSIGIGD 674
Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 9/174 (5%)
Query: 1225 QLLPSVVIKGVQGINRAVIHEEDV---------EGVTKYKLLVEGDNLRDVMATYGVKGV 1275
+L S+ ++GV I R + E + E ++ L +G NL + M GV
Sbjct: 1272 HMLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDAT 1331
Query: 1276 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGIT 1335
+ SN+ E+ + LGIEA RS ++ E++ V+E G +++RH L+ D+MTS+G ++ IT
Sbjct: 1332 RTYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAIT 1391
Query: 1336 RHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
RHG+ + + L SFE T + L DAA G+ D G+SE I++G +GTG
Sbjct: 1392 RHGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTG 1445
Score = 99.0 bits (245), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%)
Query: 607 DVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
D +GF++NS+ GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK++ED+ V+
Sbjct: 798 DSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVR 857
Query: 667 YD 668
YD
Sbjct: 858 YD 859
Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 76/290 (26%), Positives = 137/290 (47%), Gaps = 56/290 (19%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDK--DTDLDYARIVKGRLERTTLGEVC--------- 812
GVPR+KEI+N ++NI TP +T YL ++D A+ V+ ++E TTL V
Sbjct: 1100 GVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDP 1159
Query: 813 -----------EYIEEVF-VPDD---------SFILIKLDMDRIRLLHLEVDIDSIRYCI 851
+++E F +PD+ S L++L++DR ++L ++ + + I
Sbjct: 1160 DPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPWLLRLELDRAKMLDKKLSMSDVAGKI 1219
Query: 852 ERT--RGISGHLTVSGHSFLILKPK-----DSSKSFNSKMYQMK--------QLLPSVVI 896
+ R + + LI++ + D + M + +L S+ +
Sbjct: 1220 AESFERDLFTIWSEDNADKLIIRCRIIRDDDRKAEDDDNMIEEDVFLKTIEGHMLESISL 1279
Query: 897 KGVQGINRAVIHEEDV---------EGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTY 947
+GV I R + E + E ++ L +G NL + M GV + SN+
Sbjct: 1280 RGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATRTYSNSFV 1339
Query: 948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
E+ + LGIEA RS ++ E++ V+E G +++RH L+ D+MTS+G ++
Sbjct: 1340 EILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMA 1389
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/209 (27%), Positives = 95/209 (45%), Gaps = 21/209 (10%)
Query: 119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
GLLD R+GT ++ C TCG+ ++DC GHFG+I+L PVFHIG+ + IL+ +C N
Sbjct: 54 GLLDPRLGTIDRQFKCQTCGETMADCPGHFGHIELAKPVFHIGFLSKIKKILECVCWN-- 111
Query: 179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGL 238
C ++ + N Y K+ + K VC G+
Sbjct: 112 CGKLKIDSSNPK------FNDTQRYRDPKNRLNAVWNVCKTKMVCD-----TGLSAGSDN 160
Query: 239 LKISHEK----YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQL 294
+S+ + + I +D L + + E + +K + L+PLEV +
Sbjct: 161 FDLSNPSANMGHGGCGAAQPTIRKDGLRLWGSWKRGKDESDLPEK----RLLSPLEVHTI 216
Query: 295 FEAIPLEDIPLLLMNAELSKPSDLILTRL 323
F I ED+ L +N + ++P +I+T L
Sbjct: 217 FTHISSEDLAHLGLNEQYARPDWMIITVL 245
Score = 54.3 bits (129), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/37 (62%), Positives = 28/37 (75%)
Query: 1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
++ +A + P VG LAAQSIGEP TQMTL TFH+AG
Sbjct: 1055 RFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAG 1091
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,608,866
Number of Sequences: 539616
Number of extensions: 22075487
Number of successful extensions: 63046
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 55463
Number of HSP's gapped (non-prelim): 6345
length of query: 1423
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1293
effective length of database: 121,419,379
effective search space: 156995257047
effective search space used: 156995257047
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 68 (30.8 bits)