Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>psy13846
MKNSVIGTLTLYYATRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN
RAQTMRIASTLIAGRKVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGL
LDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCA
RVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLK
ISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPL
EDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMA
HRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV
LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGI
IKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRD
SYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRG
FSIGIGDVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSL
EDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLF
DNPEFHFPQVYYERRRDYSVKVTASVKVTLELWNPGDYKLSQDGVPRIKEIINASRNIST
PIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHL
EVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQ
GINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARS
TIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSD
PSLSAQEILALSNETLDSKEFLQDTSENFVRDIKKFLEEFSKKESVTSHQDKVSQPLREQ
ILSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKT
FHFAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVS
GHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEG
DNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPML
VADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIM
GLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHTNTLAAVP

High Scoring Gene Products

The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy13846
        (1423 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme...   854  2.2e-261  6
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme...   854  9.6e-261  6
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme...   836  6.9e-257  6
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme...   836  6.9e-257  6
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme...   837  1.1e-256  6
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme...   837  2.2e-256  6
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA...   846  9.9e-255  6
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme...   837  8.3e-246  6
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme...   752  5.2e-239  6
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ...   630  4.2e-204  5
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd...   628  1.6e-190  6
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,...   590  1.7e-168  6
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym...   506  4.1e-166  6
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest...   549  2.2e-160  6
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ...   515  5.5e-160  6
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme...   474  7.1e-152  6
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire...   387  3.9e-121  5
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol...   387  3.9e-121  5
RGD|1305574 - symbol:Polr3a "polymerase (RNA) III (DNA di...   831  1.6e-103  2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c...   276  2.6e-96   6
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic...   271  5.2e-95   8
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer...   271  5.2e-95   8
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg...   269  1.7e-85   5
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer...   285  3.6e-85   5
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ...   267  7.7e-85   6
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol...   261  4.6e-83   5
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ...   280  5.8e-83   5
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme...   266  7.4e-81   5
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme...   266  1.3e-80   5
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir...   266  1.3e-80   5
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme...   266  1.3e-80   5
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d...   266  1.3e-80   5
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme...   266  2.1e-80   5
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)...   264  5.6e-80   5
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd...   249  1.5e-79   5
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer...   249  1.5e-79   5
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s...   320  3.6e-69   5
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi...   254  8.6e-69   5
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid...   295  1.9e-66   6
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme...   295  1.9e-66   6
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme...   287  2.0e-66   6
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme...   287  2.7e-66   6
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme...   292  2.8e-66   7
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol...   220  4.4e-65   7
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp...   294  8.4e-65   6
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme...   286  1.1e-64   7
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ...   246  1.3e-64   6
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme...   279  3.0e-64   7
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN...   277  4.7e-64   5
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme...   279  2.2e-63   8
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase...   245  4.6e-63   6
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym...   229  4.9e-60   5
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab...   287  5.7e-60   7
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l...   225  1.0e-59   5
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme...   266  7.9e-55   3
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym...   225  6.7e-36   5
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme...   257  1.5e-34   2
UNIPROTKB|F1NJE0 - symbol:POLR1A "DNA-directed RNA polyme...   195  1.9e-33   4
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol...   203  1.1e-30   5
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera...   183  4.0e-29   5
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol...   191  4.2e-28   7
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym...   187  6.9e-28   6
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol...   190  7.1e-28   5
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol...   165  7.4e-28   5
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub...   192  8.8e-28   5
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera...   185  1.1e-27   6
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym...   185  1.1e-27   6
UNIPROTKB|H9L2Z0 - symbol:H9L2Z0 "DNA-directed RNA polyme...   203  1.4e-27   3
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme...   203  1.5e-27   3
UNIPROTKB|H9L2Z3 - symbol:H9L2Z3 "DNA-directed RNA polyme...   203  1.7e-27   3
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme...   295  2.1e-27   4
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol...   185  3.9e-27   5
UNIPROTKB|E1C4T2 - symbol:POLR1A "Uncharacterized protein...   190  9.6e-27   4
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol...   182  1.9e-26   6
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera...   213  2.7e-26   5
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol...   180  3.0e-26   7
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme...   203  4.4e-26   3
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol...   171  5.1e-26   5
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras...   179  2.1e-23   5
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol...   181  1.2e-21   4
TAIR|locus:2061151 - symbol:NRPD1B "nuclear RNA polymeras...   153  3.1e-17   6
UNIPROTKB|P0C507 - symbol:rpoC2 "DNA-directed RNA polymer...   119  1.8e-13   3
UNIPROTKB|P0C509 - symbol:rpoC2 "DNA-directed RNA polymer...   119  1.8e-13   3
UNIPROTKB|P0C508 - symbol:rpoC2 "DNA-directed RNA polymer...   119  2.3e-13   3
UNIPROTKB|Q6ENI2 - symbol:rpoC2 "DNA-directed RNA polymer...   119  2.3e-13   3
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer...   188  4.3e-12   2
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer...   188  4.3e-12   2
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer...   188  4.3e-12   2
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer...   188  4.3e-12   2


>UNIPROTKB|F1NIK7 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
            regulation of interferon-beta production" evidence=IEA] [GO:0045087
            "innate immune response" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
            EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
        Length = 1390

 Score = 854 (305.7 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 173/275 (62%), Positives = 214/275 (77%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  CI + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG K SSNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 1415
             +PMN+GTGL KLL +A   S P  R L+FDN EFH
Sbjct:  1351 IPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385

 Score = 760 (272.6 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 159/311 (51%), Positives = 204/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYF+ VI ILQ ICK  TC R++L  E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFKAVIGILQMICK--TCCRIMLSVEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KK+ E  +K + CP+CG  NG VKKCGLLKI HEKYK   K  D IV   L  +  A++ 
Sbjct:   144 KKVSEKCRKKNTCPYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSTFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP EDIPLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 734 (263.4 bits), Expect = 6.6e-225, Sum P(5) = 6.6e-225
 Identities = 149/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D D+AR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  CI + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG K
Sbjct:  1186 YYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTK 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              SSNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 563 (203.2 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 113/203 (55%), Positives = 147/203 (72%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQ+FSLILKP+ DCPV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPAI-LKPVTLWTGKQVFSLILKPSDDCPVKANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C+ DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G+  A  AM RL+R+   YL
Sbjct:   632 CYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 451 (163.8 bits), Expect = 1.5e-170, Sum P(4) = 1.5e-170
 Identities = 94/138 (68%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 248 (92.4 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 61/151 (40%), Positives = 84/151 (55%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A    RS+P+LS  E++  S   +   EFL    ++F+++I   
Sbjct:   914 GKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLC-CRDSFLQEIKKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQLEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 200 (75.5 bits), Expect = 8.8e-169, Sum P(5) = 8.8e-169
 Identities = 40/64 (62%), Positives = 47/64 (73%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL +A   S P  R L+FDN EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPIV 1389

 Score = 173 (66.0 bits), Expect = 4.0e-141, Sum P(5) = 4.0e-141
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 70 (29.7 bits), Expect = 2.2e-261, Sum P(6) = 2.2e-261
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH A+V
Sbjct:   447 GDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARV 480

 Score = 50 (22.7 bits), Expect = 1.8e-160, Sum P(4) = 1.8e-160
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 39 (18.8 bits), Expect = 1.8e-102, Sum P(3) = 1.8e-102
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSTFLQSFETAIEHNKEVE 208

 Score = 37 (18.1 bits), Expect = 4.0e-141, Sum P(5) = 4.0e-141
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLHAGYKKCDEYIEAL 731


>UNIPROTKB|Q5ZL98 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
            CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
            PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
            RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
            STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
            InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
        Length = 1390

 Score = 854 (305.7 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 173/275 (62%), Positives = 214/275 (77%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  CI + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG K SSNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTKTSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 1415
             +PMN+GTGL KLL +A   S P  R L+FDN EFH
Sbjct:  1351 IPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385

 Score = 760 (272.6 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 159/311 (51%), Positives = 204/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNHHAPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYF+ VI ILQ ICK  TC R++L  E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFKAVIGILQMICK--TCCRIMLSVEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KK+ E  +K + CP+CG  NG VKKCGLLKI HEKYK   K  D IV   L  +  A++ 
Sbjct:   144 KKVSEKCRKKNTCPYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSTFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP EDIPLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 734 (263.4 bits), Expect = 2.8e-224, Sum P(5) = 2.8e-224
 Identities = 149/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D D+AR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  CI + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICISKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG K
Sbjct:  1186 YYVLQSLKEELPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTK 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              SSNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TSSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 557 (201.1 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 112/203 (55%), Positives = 146/203 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQ+FS ILKP+ DCPV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPAI-LKPVTLWTGKQVFSSILKPSDDCPVKANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C+ DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G+  A  AM RL+R+   YL
Sbjct:   632 CYNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQVEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 451 (163.8 bits), Expect = 1.5e-170, Sum P(4) = 1.5e-170
 Identities = 94/138 (68%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 248 (92.4 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 61/151 (40%), Positives = 84/151 (55%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A    RS+P+LS  E++  S   +   EFL    ++F+++I   
Sbjct:   914 GKDEPLEFKRVLDNIRAVYPCRSEPALSKNELVLTSESIMKKNEFLC-CRDSFLQEIKKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQLEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 200 (75.5 bits), Expect = 3.7e-168, Sum P(5) = 3.7e-168
 Identities = 40/64 (62%), Positives = 47/64 (73%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL-QAVPRSEPVPRTLLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL +A   S P  R L+FDN EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADKESTPPRRPLIFDNNEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPIV 1389

 Score = 173 (66.0 bits), Expect = 4.0e-141, Sum P(5) = 4.0e-141
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 70 (29.7 bits), Expect = 9.6e-261, Sum P(6) = 9.6e-261
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH A+V
Sbjct:   447 GDIVERHLIDGDIVLFNRQPSLHKLSIMAHIARV 480

 Score = 50 (22.7 bits), Expect = 1.8e-160, Sum P(4) = 1.8e-160
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 39 (18.8 bits), Expect = 1.8e-102, Sum P(3) = 1.8e-102
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSTFLQSFETAIEHNKEVE 208

 Score = 37 (18.1 bits), Expect = 4.0e-141, Sum P(5) = 4.0e-141
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLHAGYKKCDEYIEAL 731


>UNIPROTKB|O14802 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
            "defense response to virus" evidence=IEA] [GO:0003682 "chromatin
            binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
            evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=TAS]
            [GO:0006385 "transcription elongation from RNA polymerase III
            promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
            III transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
            "nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
            InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
            GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
            GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
            OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
            EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
            RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
            SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
            PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
            KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
            HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
            neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
            PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
            ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
            Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
            GermOnline:ENSG00000148606 Uniprot:O14802
        Length = 1390

 Score = 836 (299.3 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 168/275 (61%), Positives = 210/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 1415
             +PMN+GTGL KLL    R   P  R L+FD  EFH
Sbjct:  1351 IPMNIGTGLFKLLHKADRDPNPPKRPLIFDTNEFH 1385

 Score = 764 (274.0 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 159/311 (51%), Positives = 206/311 (66%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD Q  P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNQHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K ++C HCG  NG VKKCGLLKI HEKYK   K  D IV + L  +  A++ 
Sbjct:   144 KKISDKCRKKNICHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP ED+PLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 728 (261.3 bits), Expect = 3.5e-223, Sum P(5) = 3.5e-223
 Identities = 147/237 (62%), Positives = 186/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG +
Sbjct:  1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 546 (197.3 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 111/203 (54%), Positives = 146/203 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQIFS+IL+P+ D PV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPTI-LKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+   YL
Sbjct:   632 CANDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 453 (164.5 bits), Expect = 1.3e-167, Sum P(4) = 1.3e-167
 Identities = 95/138 (68%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 239 (89.2 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 59/151 (39%), Positives = 83/151 (54%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A     S+P+LS  E++  +   +   EFL    ++F+++I   
Sbjct:   914 GKDEPLEFKRVLDNIKAVFPCPSEPALSKNELILTTESIMKKSEFLC-CQDSFLQEIKKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQVEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 195 (73.7 bits), Expect = 3.7e-167, Sum P(5) = 3.7e-167
 Identities = 38/64 (59%), Positives = 44/64 (68%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R   P  R L+FD  EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPNPPKRPLIFDTNEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPLV 1389

 Score = 173 (66.0 bits), Expect = 5.3e-138, Sum P(5) = 5.3e-138
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 72 (30.4 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH A+V
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV 480

 Score = 50 (22.7 bits), Expect = 7.1e-159, Sum P(4) = 7.1e-159
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 45 (20.9 bits), Expect = 4.5e-93, Sum P(3) = 4.5e-93
 Identities = 19/82 (23%), Positives = 33/82 (40%)

Query:   146 GHFGYIDLPLPVFHIGYF-RCVINILQSICKN-PTCARVLLGEEKAAGFRAKLRNPALSY 203
             G  G +D  +     GY  R ++  L+ +C       R   G+     +     +PA   
Sbjct:   854 GREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLTVRSSTGDIIQFIYGGDGLDPAAME 913

Query:   204 LVRKSLK-KKILETTKKVSVCP 224
                + L+ K++L+  K V  CP
Sbjct:   914 GKDEPLEFKRVLDNIKAVFPCP 935

 Score = 40 (19.1 bits), Expect = 1.7e-99, Sum P(3) = 1.7e-99
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVE 208

 Score = 38 (18.4 bits), Expect = 5.3e-138, Sum P(5) = 5.3e-138
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLNAGYKKCDEYIEAL 731


>UNIPROTKB|A4IF62 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase III subunit
            RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
            response" evidence=ISS] [GO:0032728 "positive regulation of
            interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
            GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
            IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
            ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
            Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
            HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
            OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
            PANTHER:PTHR19376:SF15 Uniprot:A4IF62
        Length = 1390

 Score = 836 (299.3 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 168/275 (61%), Positives = 211/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 1415
             +PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1351 IPMNIGTGLFKLLHKANRDPSPPRRPLIFDTNEFH 1385

 Score = 757 (271.5 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 159/311 (51%), Positives = 204/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD   +P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K + C HCG  NG VKKCGLLKI HEKYK   K  D IV   L  +  A++ 
Sbjct:   144 KKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSSFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP EDIPLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGKAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 730 (262.0 bits), Expect = 1.9e-222, Sum P(5) = 1.9e-222
 Identities = 147/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG +
Sbjct:  1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 545 (196.9 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 111/203 (54%), Positives = 146/203 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQIFS+IL+P+ D PV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPTI-LKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGRGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+   YL
Sbjct:   632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 453 (164.5 bits), Expect = 1.9e-168, Sum P(4) = 1.9e-168
 Identities = 95/138 (68%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 247 (92.0 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 61/151 (40%), Positives = 84/151 (55%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A    RS+P+LS  E+L  +   +   EFL    ++F+++I   
Sbjct:   914 GKDEPLEFKRVLDNIKAVFPCRSEPALSKNELLLSAESIMKKNEFLC-CQDSFLQEIKKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKEVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQIEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 193 (73.0 bits), Expect = 5.2e-166, Sum P(5) = 5.2e-166
 Identities = 38/64 (59%), Positives = 44/64 (68%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSPPRRPLIFDTNEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPLV 1389

 Score = 173 (66.0 bits), Expect = 7.7e-139, Sum P(5) = 7.7e-139
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 72 (30.4 bits), Expect = 6.9e-257, Sum P(6) = 6.9e-257
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH A+V
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV 480

 Score = 50 (22.7 bits), Expect = 3.8e-158, Sum P(4) = 3.8e-158
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 40 (19.1 bits), Expect = 2.5e-100, Sum P(3) = 2.5e-100
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSSFLQSFETAIEHNKEVE 208

 Score = 38 (18.4 bits), Expect = 7.7e-139, Sum P(5) = 7.7e-139
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLNAGYKKCDEYIEAL 731


>UNIPROTKB|F1S2E6 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
            GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
        Length = 1390

 Score = 837 (299.7 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 169/275 (61%), Positives = 211/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FILIKL ++RIRLL LEV+ +++RY  C+ + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILIKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTQTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 1415
             +PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1351 IPMNIGTGLFKLLHKANRDPSPPRRPLIFDTDEFH 1385

 Score = 758 (271.9 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 159/311 (51%), Positives = 205/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD   +P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNNHSPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEERKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K + C HCG  NG VKKCGLLKI HEKYK   K  D IV + L  +  A++ 
Sbjct:   144 KKISDKCRKKNTCHHCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP EDIPLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDIPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 730 (262.0 bits), Expect = 1.9e-222, Sum P(5) = 1.9e-222
 Identities = 148/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FILIKL ++RIRLL LEV+ +++RY  C+ + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILIKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG +
Sbjct:  1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTQ 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 544 (196.6 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 110/203 (54%), Positives = 146/203 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQ+FS+IL+P+ D PV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPTI-LKPVTLWTGKQVFSVILRPSYDNPVRANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+   YL
Sbjct:   632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 453 (164.5 bits), Expect = 3.0e-168, Sum P(4) = 3.0e-168
 Identities = 95/138 (68%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 244 (91.0 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 60/151 (39%), Positives = 84/151 (55%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A    +S+P+LS  E+L  +   +   EFL    ++F+++I   
Sbjct:   914 GKDEPLEFKRVLDNIKAVFPCQSEPALSKNELLLTTESIMKKNEFLC-CQDSFLQEIKKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRI------TPTQIEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 194 (73.4 bits), Expect = 4.0e-166, Sum P(5) = 4.0e-166
 Identities = 38/64 (59%), Positives = 44/64 (68%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPSPPRRPLIFDTDEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPLV 1389

 Score = 173 (66.0 bits), Expect = 8.2e-139, Sum P(4) = 8.2e-139
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 72 (30.4 bits), Expect = 1.1e-256, Sum P(6) = 1.1e-256
 Identities = 17/34 (50%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH A+V
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLARV 480

 Score = 50 (22.7 bits), Expect = 2.3e-158, Sum P(4) = 2.3e-158
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 40 (19.1 bits), Expect = 4.0e-100, Sum P(3) = 4.0e-100
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVE 208


>UNIPROTKB|J9P629 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
            GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
            Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
            Uniprot:J9P629
        Length = 1390

 Score = 837 (299.7 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 168/275 (61%), Positives = 211/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 1415
             +PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1351 IPMNIGTGLFKLLHKADRDPSPPRRPLIFDTNEFH 1385

 Score = 753 (270.1 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 157/311 (50%), Positives = 205/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K ++C +CG  NG VKKCGLLKI HEKYK   K  D IV + L  +  A++ 
Sbjct:   144 KKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP ED+PLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 730 (262.0 bits), Expect = 6.0e-222, Sum P(5) = 6.0e-222
 Identities = 147/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG +
Sbjct:  1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 542 (195.9 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 109/203 (53%), Positives = 143/203 (70%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++    + 
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEK 578

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
               +          P   ++   +WTGKQIFS+IL+P+ D PV ANL+TKG+ Y    E+ 
Sbjct:   579 IKV-------HLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+   YL
Sbjct:   632 CVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 456 (165.6 bits), Expect = 1.1e-168, Sum P(4) = 1.1e-168
 Identities = 96/138 (69%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH AKV PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 245 (91.3 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 63/155 (40%), Positives = 88/155 (56%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFL--QDTS----ENFV 1050
             G   P+E KR+LD+I A    +S+P+LS  E++  +   +   EFL  QD+     +NFV
Sbjct:   914 GKDEPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKKTEFLCCQDSFLQEIKNFV 973

Query:  1051 RDIXXXXXXXXXXXXVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKY 1110
             + I            +  + +  ++P   ++L   D+I       P       E CR+KY
Sbjct:   974 KGISEKIKKTRDKYGI--NDNGTTEP---RVLYQLDRI------TPTQIEKFLETCRDKY 1022

Query:  1111 VRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +RAQ+EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1023 MRAQMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 194 (73.4 bits), Expect = 1.3e-165, Sum P(5) = 1.3e-165
 Identities = 38/64 (59%), Positives = 44/64 (68%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPSPPRRPLIFDTNEFH 1385

Query:   727 FPQV 730
              P V
Sbjct:  1386 IPLV 1389

 Score = 173 (66.0 bits), Expect = 9.5e-139, Sum P(5) = 9.5e-139
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 75 (31.5 bits), Expect = 2.2e-256, Sum P(6) = 2.2e-256
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH AKV
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKV 480

 Score = 47 (21.6 bits), Expect = 7.7e-158, Sum P(4) = 7.7e-158
 Identities = 24/82 (29%), Positives = 32/82 (39%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I + L
Sbjct:   562 AKACQIIASILVGKDEKIKVHL 583

 Score = 40 (19.1 bits), Expect = 3.1e-100, Sum P(3) = 3.1e-100
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVE 208

 Score = 38 (18.4 bits), Expect = 9.5e-139, Sum P(5) = 9.5e-139
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLNAGYKKCDEYIEAL 731


>ZFIN|ZDB-GENE-050208-103 [details] [associations]
            symbol:polr3a "polymerase (RNA) III (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
            PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
            EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
            EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
            RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
            GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
            Uniprot:E7F5P2
        Length = 1390

 Score = 846 (302.9 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 169/275 (61%), Positives = 214/275 (77%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD+FIL+KL +DRIRLL LEV+ +++RY  C  + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDTFILVKLSLDRIRLLRLEVNAETVRYSICTSKLRVKPGDVQVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +KQ LP VV++G+  ++RAVIH ++  G  K+KLLVEGD
Sbjct:  1171 AVVCVSPRENSKSSMYYVLQSLKQDLPKVVVQGIPEVSRAVIHIDEQSGKQKFKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             N+R VMAT+GV G K +SNNTYEV KTLGIEAARSTI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             ADLM+ KGE+LGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1291 ADLMSYKGEILGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1350

Query:  1382 LPMNVGTGLIKLLQAVPR-SEPVPRTLLFDNPEFH 1415
             +PMN+GTGL KLL    R ++P  R LLFD+P+FH
Sbjct:  1351 IPMNIGTGLFKLLHRSNREADPPRRPLLFDSPDFH 1385

 Score = 730 (262.0 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 152/310 (49%), Positives = 206/310 (66%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             ++++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EQMRQQAHIQVVSKNLYSQDTSHKPLQYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             +DL LP FHIGYF+ ++ ILQ ICK  TC+ +LL +E+   F   LR P L+YL ++ LK
Sbjct:    86 LDLELPCFHIGYFKAIVGILQMICK--TCSHILLTKEEKLQFLDYLRRPGLAYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K +VC +C   NG VKKCGLLKI HEKYK+  K  D  V D L  ++ A++ 
Sbjct:   144 KKISDKCRKKTVCLNCNAFNGSVKKCGLLKIIHEKYKSTKKVVDPAVSDFLQSFDVAIEH 203

Query:   271 NPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCI 330
             N E+E+       + LNPL VL LF  IP +D+PLLLMN E  KP+DLILTRLLVPP CI
Sbjct:   204 NKEVESLLTRAQ-ENLNPLVVLNLFRRIPDKDVPLLLMNPESGKPADLILTRLLVPPLCI 262

Query:   331 RPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY-N 382
             RPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y N
Sbjct:   263 RPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRMTGAKTQMIMEDWDFLQLQCALYIN 322

Query:   383 ADFDGDEMNV 392
             ++  G  +N+
Sbjct:   323 SELSGIPLNM 332

 Score = 716 (257.1 bits), Expect = 5.5e-217, Sum P(5) = 5.5e-217
 Identities = 144/237 (60%), Positives = 186/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+NISTPII+A LD + D D+AR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKNISTPIISANLDTNDDPDFARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
             +FIL+KL +DRIRLL LEV+ +++RY  C  + R   G + V G + + + P+++SKS  
Sbjct:  1126 TFILVKLSLDRIRLLRLEVNAETVRYSICTSKLRVKPGDVQVHGEAVVCVSPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +KQ LP VV++G+  ++RAVIH ++  G  K+KLLVEGDN+R VMAT+GV G K
Sbjct:  1186 YYVLQSLKQDLPKVVVQGIPEVSRAVIHIDEQSGKQKFKLLVEGDNMRSVMATHGVNGSK 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAARSTI+ EI+  M NHGMSID RH ML+ADLM+ KGE+LG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARSTIINEIQYTMVNHGMSIDRRHVMLLADLMSYKGEILG 1302

 Score = 546 (197.3 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 110/200 (55%), Positives = 143/200 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R +  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++      +P + ++   +WTGKQIFSLILKP++ CPV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKISLPHPAI-LKPIRLWTGKQIFSLILKPSKSCPVMANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DS+V++ NSEL+ GSMDK TLGSG K N+FYILLRD+G+  A  AM RL+R+   YL
Sbjct:   632 CANDSFVVIHNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQQEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQ 616
              NRGFSIGIGDVTPGQG ++
Sbjct:   692 SNRGFSIGIGDVTPGQGLLK 711

 Score = 447 (162.4 bits), Expect = 1.3e-168, Sum P(4) = 1.3e-168
 Identities = 89/131 (67%), Positives = 103/131 (78%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLHKLSIMAH A+V PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDIVLFNRQPSLHKLSIMAHIARVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRIASTLI 471
              +  +I ++++
Sbjct:   562 TKACQIVASIL 572

 Score = 272 (100.8 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 51/59 (86%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV +SF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVADSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 248 (92.4 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 61/151 (40%), Positives = 83/151 (54%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G   P+E KR+LD+I A  S   +P+LS  E+L  S+  +  K+FL    + F+ +I   
Sbjct:   914 GKDEPLEFKRVLDNIRAVYSCTGEPALSRNELLLTSDSIMKRKDFLC-CKDTFLEEIRKF 972

Query:  1057 XXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQ 1114
                       T  +  ++       ++L   D+I       P       E CR+KY+RAQ
Sbjct:   973 IKTVSEKVKKTRDKYGINDNGTTEPKVLYQLDRI------TPTQLEKFLETCRDKYMRAQ 1026

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 MEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 201 (75.8 bits), Expect = 7.1e-163, Sum P(5) = 7.1e-163
 Identities = 38/62 (61%), Positives = 47/62 (75%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR-SEPVPRTLLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R ++P  R LLFD+P+FH
Sbjct:  1326 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHRSNREADPPRRPLLFDSPDFH 1385

Query:   727 FP 728
              P
Sbjct:  1386 IP 1387

 Score = 170 (64.9 bits), Expect = 1.7e-139, Sum P(4) = 1.7e-139
 Identities = 32/55 (58%), Positives = 43/55 (78%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R +  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRTKACQIVASILVGK 575

 Score = 69 (29.3 bits), Expect = 9.9e-255, Sum P(6) = 9.9e-255
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  H+   +       PSLHKLSIMAH A+V
Sbjct:   447 GDVVERHMIDGDIVLFNRQPSLHKLSIMAHIARV 480

 Score = 46 (21.3 bits), Expect = 8.6e-156, Sum P(4) = 8.6e-156
 Identities = 24/82 (29%), Positives = 32/82 (39%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ +  + V  D  I I L
Sbjct:   562 TKACQIVASILVGKDEKIKISL 583

 Score = 38 (18.4 bits), Expect = 2.1e-101, Sum P(3) = 2.1e-101
 Identities = 9/38 (23%), Positives = 19/38 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGV 915
             K  + K    K+++   V   +Q  + A+ H ++VE +
Sbjct:   173 KIIHEKYKSTKKVVDPAVSDFLQSFDVAIEHNKEVESL 210

 Score = 38 (18.4 bits), Expect = 1.2e-85, Sum P(4) = 1.2e-85
 Identities = 23/105 (21%), Positives = 43/105 (40%)

Query:   502 TGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLG 561
             +GKQ F L+++ +    V A     G   T+N  +    +  I      +   +  + + 
Sbjct:  1218 SGKQKFKLLVEGDNMRSVMATHGVNGSKTTSNNTYEVEKTLGIEAARSTIINEIQYTMVN 1277

Query:   562 SGGKANVFYI-LLRDF----GEDVAVTAMWRLSRMTSFYLMNRGF 601
              G   +  ++ LL D     GE + +T  + L++M    LM   F
Sbjct:  1278 HGMSIDRRHVMLLADLMSYKGEILGITR-FGLAKMKESVLMLASF 1321


>UNIPROTKB|E2QXD8 [details] [associations]
            symbol:POLR3A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
        Length = 1376

 Score = 837 (299.7 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 168/275 (61%), Positives = 211/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G 
Sbjct:  1097 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGE 1156

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGD
Sbjct:  1157 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGD 1216

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1217 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1276

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:  1277 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 1336

Query:  1382 LPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 1415
             +PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1337 IPMNIGTGLFKLLHKADRDPSPPRRPLIFDTNEFH 1371

 Score = 753 (270.1 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 157/311 (50%), Positives = 205/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKKQFLDYLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K ++C +CG  NG VKKCGLLKI HEKYK   K  D IV + L  +  A++ 
Sbjct:   144 KKISDKCRKKNICHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP ED+PLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 730 (262.0 bits), Expect = 1.1e-220, Sum P(5) = 1.1e-220
 Identities = 147/237 (62%), Positives = 187/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LDKD D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1052 GVPRIKEIINASKAISTPIITAQLDKDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1111

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C+ + R   G + V G + + + P+++SKS  
Sbjct:  1112 CFILVKLSLERIRLLRLEVNAETVRYSICMSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1171

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  KYKLLVEGDNLR VMAT+GVKG +
Sbjct:  1172 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKYKLLVEGDNLRAVMATHGVKGTR 1231

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1232 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1288

 Score = 529 (191.3 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 109/206 (52%), Positives = 143/206 (69%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFIT---GGYLLTQKNAFFNRAQTMRIASTLIADT 474
             A VLM  K+NLVTPRNGE LIAA QDF+T   G YLLT K+ FF+RA+  +I ++++   
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIASILVGK 578

Query:   475 SDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN- 533
              +   +          P   ++   +WTGKQIFS+IL+P+ D PV ANL+TKG+ Y    
Sbjct:   579 DEKIKV-------HLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKG 631

Query:   534 EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTS 593
             E+ C  DSYV ++NSEL++GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+  
Sbjct:   632 EDLCVNDSYVTIQNSELMSGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAP 691

Query:   594 FYLMNRGFSIGIGDVTPGQGFVQNSF 619
              YL NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 VYLSNRGFSIGIGDVTPGQGLLKAKY 717

 Score = 443 (161.0 bits), Expect = 4.8e-158, Sum P(4) = 4.8e-158
 Identities = 96/141 (68%), Positives = 105/141 (74%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH AKV PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFIT---GGYLLTQKNAF 457
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+T   G YLLT K+ F
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTF 561

Query:   458 FNRAQTMRI-ASTLIADTSDI 477
             F+RA+  +I AS L+     I
Sbjct:   562 FDRAKACQIIASILVGKDEKI 582

 Score = 277 (102.6 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   834 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 892

 Score = 194 (73.4 bits), Expect = 2.4e-164, Sum P(5) = 2.4e-164
 Identities = 38/64 (59%), Positives = 44/64 (68%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRT-LLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R    PR  L+FD  EFH
Sbjct:  1312 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKADRDPSPPRRPLIFDTNEFH 1371

Query:   727 FPQV 730
              P V
Sbjct:  1372 IPLV 1375

 Score = 160 (61.4 bits), Expect = 3.4e-128, Sum P(5) = 3.4e-128
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFIT---GGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+T   G YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQIIASILVGK 578

 Score = 156 (60.0 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 46/139 (33%), Positives = 72/139 (51%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFL--QDTS----ENFV 1050
             G   P+E KR+LD+I A    +S+P+LS  E++  +   +   EFL  QD+     +NFV
Sbjct:   917 GKDEPLEFKRVLDNIKAVFPCQSEPALSKNELVLTTESIMKKTEFLCCQDSFLQEIKNFV 976

Query:  1051 RDIXXXXXXXXXXXXVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPSACKAEACREKY 1110
             + I            +  + +  ++P   ++L   D+I       P       E CR+KY
Sbjct:   977 KGISEKIKKTRDKYGI--NDNGTTEP---RVLYQLDRI------TPTQIEKFLETCRDKY 1025

Query:  1111 VRAQIEPATAVGALAAQSI 1129
             +RAQ+EP +AVGAL AQS+
Sbjct:  1026 MRAQMEPGSAVGALCAQSV 1044

 Score = 75 (31.5 bits), Expect = 8.3e-246, Sum P(6) = 8.3e-246
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH AKV
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKV 480

 Score = 42 (19.8 bits), Expect = 2.1e-157, Sum P(4) = 2.1e-157
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query:  1136 MTLK-TFHFAGEVCEYIEEVFVPDDSFILIKL 1166
             +TLK TF    + C+ I  + V  D  I + L
Sbjct:   555 LTLKDTFFDRAKACQIIASILVGKDEKIKVHL 586

 Score = 40 (19.1 bits), Expect = 6.0e-91, Sum P(3) = 6.0e-91
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVE 208

 Score = 38 (18.4 bits), Expect = 3.4e-128, Sum P(5) = 3.4e-128
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   703 IGDVTPGQGLLKAKYELLNAGYKKCDEYIEAL 734


>UNIPROTKB|E9PTB6 [details] [associations]
            symbol:Polr3a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
            "positive regulation of interferon-beta production" evidence=IEA]
            [GO:0045087 "innate immune response" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
            GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
            IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
            Uniprot:E9PTB6
        Length = 1342

 Score = 752 (269.8 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 158/311 (50%), Positives = 204/311 (65%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             + ++QQ+HIQ+VSKNLY QD    P+ +G+LD RMGT++K+  C TCG+NL+DC+GH+GY
Sbjct:    26 EEMRQQAHIQVVSKNLYSQDNNHAPLLYGVLDHRMGTSEKDRPCETCGKNLADCLGHYGY 85

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
             IDL LP FH+GYFR VI ILQ ICK  TC  ++L +E+   F   L+ P L+YL ++ LK
Sbjct:    86 IDLELPCFHVGYFRAVIGILQMICK--TCCHIMLSQEEKQQFLDFLKRPGLTYLQKRGLK 143

Query:   211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
             KKI +  +K S C +CG  NG VKKCGLLKI HEKYK   K  D IV + L  +  A++ 
Sbjct:   144 KKISDKCRKKSTCHYCGAFNGTVKKCGLLKIIHEKYKTNKKVVDPIVSNFLQSFETAIEH 203

Query:   271 NPEIEAHKKFGLIQ-TLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNC 329
             N E+E     G  Q  LNPL VL LF+ IP ED+PLLLMN E  KPSDLILTRLLVPP C
Sbjct:   204 NKEVEP--LLGRAQENLNPLVVLNLFKRIPAEDVPLLLMNPEAGKPSDLILTRLLVPPLC 261

Query:   330 IRPSVISDLKSD-NDVVLFNRQPSLHKLS--IMAHR---AKV-LPHRTFRFNECVCTPY- 381
             IRPSV+SDLKS  N+  L  +   +  L+  I  HR   AK  +    + F +  C  Y 
Sbjct:   262 IRPSVVSDLKSGTNEDDLTMKLTEIIFLNDVIKKHRISGAKTQMIMEDWDFLQLQCALYI 321

Query:   382 NADFDGDEMNV 392
             N++  G  +N+
Sbjct:   322 NSELSGIPLNM 332

 Score = 718 (257.8 bits), Expect = 3.5e-221, Sum P(5) = 3.5e-221
 Identities = 145/237 (61%), Positives = 185/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LD D D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:  1066 GVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 1125

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G + + + P+++SKS  
Sbjct:  1126 CFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 1185

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  K+KLLVEGDNLR VMAT+GVKG +
Sbjct:  1186 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTR 1245

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:  1246 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 1302

 Score = 697 (250.4 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 140/232 (60%), Positives = 180/232 (77%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G 
Sbjct:  1111 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGE 1170

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  K+KLLVEGD
Sbjct:  1171 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGD 1230

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:  1231 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 1290

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISG 1373
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + G
Sbjct:  1291 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCG 1342

 Score = 545 (196.9 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 111/203 (54%), Positives = 145/203 (71%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++      
Sbjct:   519 ALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILV----- 573

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN-EEF 536
              G  ++   R   P + ++   +WTGKQIFS+IL+P+ D PV ANL+TKG+ Y    E+ 
Sbjct:   574 -GKDEKIKVRLPPPTI-LKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDL 631

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C  DSYV ++NSEL+ GSMDK TLGSG K N+FYILLRD+G++ A  AM RL+R+   YL
Sbjct:   632 CTNDSYVTIQNSELMCGSMDKGTLGSGSKNNIFYILLRDWGQNEAADAMSRLARLAPVYL 691

Query:   597 MNRGFSIGIGDVTPGQGFVQNSF 619
              NRGFSIGIGDVTPGQG ++  +
Sbjct:   692 SNRGFSIGIGDVTPGQGLLKAKY 714

 Score = 456 (165.6 bits), Expect = 6.5e-151, Sum P(4) = 6.5e-151
 Identities = 96/138 (69%), Positives = 105/138 (76%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLHKLSIMAH AKV PHRTFRFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   456 DGDVVLFNRQPSLHKLSIMAHLAKVKPHRTFRFNECVCTPYNADFDGDEMNLHLPQTEEA 515

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEAL              VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+R
Sbjct:   516 KAEAL--------------VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:   461 AQTMRI-ASTLIADTSDI 477
             A+  +I AS L+     I
Sbjct:   562 AKACQIIASILVGKDEKI 579

 Score = 277 (102.6 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 52/59 (88%), Positives = 56/59 (94%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFV NSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGYMQRRLVKSLEDLC QYD++
Sbjct:   831 KGFVANSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYMQRRLVKSLEDLCSQYDLT 889

 Score = 232 (86.7 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 62/152 (40%), Positives = 86/152 (56%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSK-EFLQDTSENFVRDIXX 1055
             G   P+E KR+LD+I A    +S+ +LS  E L L+ E +  K EFL    ++F+++I  
Sbjct:   914 GKDEPLEFKRVLDNIKAVYPCQSERALSKNE-LTLTTEAIMKKNEFLC-CQDSFLQEIKT 971

Query:  1056 XXXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
                        T  +  ++       ++L   D+I    +   F      E CR+KY+RA
Sbjct:   972 FIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITR-TQIEKF-----LETCRDKYMRA 1025

Query:  1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             Q+EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:  1026 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 1057

 Score = 173 (66.0 bits), Expect = 1.1e-120, Sum P(5) = 1.1e-120
 Identities = 33/55 (60%), Positives = 44/55 (80%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGR 75
             VLM  K+NLVTPRNGE LIAA QDF+TG YLLT K+ FF+RA+  +I ++++ G+
Sbjct:   521 VLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGK 575

 Score = 75 (31.5 bits), Expect = 5.2e-239, Sum P(6) = 5.2e-239
 Identities = 18/34 (52%), Positives = 20/34 (58%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH AKV
Sbjct:   447 GDIVERHLIDGDVVLFNRQPSLHKLSIMAHLAKV 480

 Score = 51 (23.0 bits), Expect = 4.0e-151, Sum P(5) = 4.0e-151
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query:   668 DMSFDAAFYGQTDCISG 684
             D  FDAA++GQ D + G
Sbjct:  1326 DHLFDAAYFGQKDSVCG 1342

 Score = 50 (22.7 bits), Expect = 2.5e-142, Sum P(4) = 2.5e-142
 Identities = 24/82 (29%), Positives = 33/82 (40%)

Query:  1091 GRESN---PFPSACKAEACREKYVRAQ-IEPATAVGALAA-QSIGEPGTQMTLK-TFHFA 1144
             G E N   P     KAEA      +A  + P      +AA Q        +TLK TF   
Sbjct:   502 GDEMNLHLPQTEEAKAEALVLMGTKANLVTPRNGEPLIAAIQDFLTGAYLLTLKDTFFDR 561

Query:  1145 GEVCEYIEEVFVPDDSFILIKL 1166
              + C+ I  + V  D  I ++L
Sbjct:   562 AKACQIIASILVGKDEKIKVRL 583

 Score = 40 (19.1 bits), Expect = 6.6e-83, Sum P(3) = 6.6e-83
 Identities = 9/36 (25%), Positives = 18/36 (50%)

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
             K  + K    K+++  +V   +Q    A+ H ++VE
Sbjct:   173 KIIHEKYKTNKKVVDPIVSNFLQSFETAIEHNKEVE 208

 Score = 38 (18.4 bits), Expect = 1.1e-120, Sum P(5) = 1.1e-120
 Identities = 12/32 (37%), Positives = 14/32 (43%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             I  V    GLLK  +E      KK D  +E L
Sbjct:   700 IGDVTPGQGLLKAKYELLNAGYKKCDEYIEAL 731

 Score = 38 (18.4 bits), Expect = 2.2e-73, Sum P(4) = 2.2e-73
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query:   502 TGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEF 536
             +GK+ F L+++ +    V A    KG   T+N  +
Sbjct:  1218 SGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTY 1252


>FB|FBgn0030687 [details] [associations]
            symbol:CG17209 species:7227 "Drosophila melanogaster"
            [GO:0006383 "transcription from RNA polymerase III promoter"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
            evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
            GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
            ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
            EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
            FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
            GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
        Length = 1383

 Score = 630 (226.8 bits), Expect = 4.2e-204, Sum P(5) = 4.2e-204
 Identities = 137/266 (51%), Positives = 184/266 (69%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCI--ERTRGISGHL-TVSGH 1202
             E+  Y+E V  P   ++ I +DM RI+LL L +D+D+I + I   R R     +  V+  
Sbjct:  1104 ELSSYVEVVCGPYSCYLAIGVDMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQ 1163

Query:  1203 SFLILKPKDSSKS-FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             S ++++ + +  S  N+++ ++   L +VV+ G+  INRAVI  +D      YKL +EG 
Sbjct:  1164 SRIVVRVEATRTSTINAELARLALSLQNVVVAGLPNINRAVIAVDDARQPPTYKLCIEGY 1223

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
              LRDV+ATYGV G +  SNN  E+Y+TLGIEAAR+ IM+EI  VME HGMS+D+RH ML+
Sbjct:  1224 GLRDVIATYGVVGKRTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLL 1283

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             A  MT++GEVLGITRHGLAKM+ESV NLASFE T+DHLFDAA+YGQTD I+GVSE II+G
Sbjct:  1284 ASQMTARGEVLGITRHGLAKMRESVFNLASFEKTADHLFDAAYYGQTDAINGVSERIILG 1343

Query:  1382 LPMNVGTGLIKLLQA-----VPRSEP 1402
             +P  +GTG+ KLLQ      VP  EP
Sbjct:  1344 MPACIGTGIFKLLQQHEDKQVPPIEP 1369

 Score = 615 (221.5 bits), Expect = 4.2e-204, Sum P(5) = 4.2e-204
 Identities = 138/329 (41%), Positives = 199/329 (60%)

Query:    87 VTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVG 146
             ++  D +QQ++ ++I+SKNLY    QR P+P+G+LDRRMG + K+A C TCGQ L++C+G
Sbjct:    22 ISGADEIQQEALVRIISKNLY--QAQRQPVPYGVLDRRMGISTKDAMCETCGQGLNECIG 79

Query:   147 HFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVR 206
             HFGY+DL LPVFHIG+FR  INILQ ICK   CA V+L  E    +  KL NP  SYL +
Sbjct:    80 HFGYLDLALPVFHIGHFRSTINILQMICK--VCAHVMLKPEDRQLYEKKLHNPNFSYLGK 137

Query:   207 KSLKKKILETTKKVSVCPHCGEINGVVKKC-GLLKISHEKYKNRTKKKDAIVEDLLAEYN 265
             K+L  ++L   KKV+ CPHCG  NG VKK  GLLKI H+ YK R  K D++    + E  
Sbjct:   138 KALHVQMLAKAKKVTKCPHCGSPNGGVKKGPGLLKILHDPYKGR--KMDSLFTSNMNEML 195

Query:   266 EAVKFNPEIEAHK-KFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLL 324
              + + N ++ +    +   + L PL VL LFE IP  D+ LL M +  + P  LI+TR+ 
Sbjct:   196 RSTQTNRDLNSTLGNYSTAEELTPLMVLDLFEQIPQRDVALLGMCSHDAHPKHLIVTRVF 255

Query:   325 VPPNCIRPSVISDLKS---DNDVVLFNRQPSLHKLSIMAHRA---KV-LPHRTFRFNEC- 376
             VPP CIRPSV+S++K+   ++D+ +   +  L    I  H A   K+ L H  + F +  
Sbjct:   256 VPPACIRPSVLSEVKAGTTEDDLTMKQSEILLINDVIQRHMATGGKIELIHEDWDFLQLH 315

Query:   377 VCTPYNADFDGDEMNVHLPQTEEARAEAL 405
             V   ++++  G  +N+   +T     + L
Sbjct:   316 VALYFHSEISGIPINMAPKKTTRGIVQRL 344

 Score = 539 (194.8 bits), Expect = 4.2e-204, Sum P(5) = 4.2e-204
 Identities = 103/200 (51%), Positives = 139/200 (69%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A +LM N+SNLVTP+NGE+LIAATQDFITGGYLLTQK  F  + + M++A+  +A+    
Sbjct:   518 ALILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLANEDST 577

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFC 537
               I          P   ++   +WTGKQ+FSL+++PN D  V  N+  KGR YT N++ C
Sbjct:   578 MHI-------KLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYTRNKDLC 630

Query:   538 HRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLM 597
               DS++ +RNSEL+ G MDK+T+GSG K  +FY+LLRDFGE  A  AMWRL+R+ S++L 
Sbjct:   631 SNDSWIHIRNSELMCGVMDKATMGSGTKQCIFYLLLRDFGESHATKAMWRLARIASYFLQ 690

Query:   598 NRGFSIGIGDVTPGQGFVQN 617
             NRGFS GI DVTP +  +Q+
Sbjct:   691 NRGFSFGISDVTPSKKLLQH 710

 Score = 517 (187.1 bits), Expect = 3.1e-179, Sum P(4) = 3.1e-179
 Identities = 114/238 (47%), Positives = 161/238 (67%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRI EIINA++ ISTPIITA L+    +++AR VK R+E+TTL E+  Y+E V  P  
Sbjct:  1058 GVPRIVEIINATKTISTPIITAELENCHSMEFARQVKARIEKTTLAELSSYVEVVCGPYS 1117

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCI--ERTRGISGHL-TVSGHSFLILKPKDSSKS- 879
              ++ I +DM RI+LL L +D+D+I + I   R R     +  V+  S ++++ + +  S 
Sbjct:  1118 CYLAIGVDMARIKLLGLHIDLDTIVFSILKSRMRVKPTQVEVVASQSRIVVRVEATRTST 1177

Query:   880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
              N+++ ++   L +VV+ G+  INRAVI  +D      YKL +EG  LRDV+ATYGV G 
Sbjct:  1178 INAELARLALSLQNVVVAGLPNINRAVIAVDDARQPPTYKLCIEGYGLRDVIATYGVVGK 1237

Query:   940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
             +  SNN  E+Y+TLGIEAAR+ IM+EI  VME HGMS+D+RH ML+A  MT++GEVLG
Sbjct:  1238 RTRSNNICEIYQTLGIEAARTIIMSEITEVMEGHGMSVDWRHIMLLASQMTARGEVLG 1295

 Score = 468 (169.8 bits), Expect = 7.1e-137, Sum P(4) = 7.1e-137
 Identities = 91/133 (68%), Positives = 105/133 (78%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLHK+SIM HRAKV P RTFRFNEC CTPYNADFDGDEMN+HLPQTEEA
Sbjct:   455 DGDIVLFNRQPSLHKMSIMCHRAKVQPQRTFRFNECACTPYNADFDGDEMNLHLPQTEEA 514

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEAL              +LM N+SNLVTP+NGE+LIAATQDFITGGYLLTQK  F  +
Sbjct:   515 RAEAL--------------ILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTK 560

Query:   461 AQTMRIASTLIAD 473
              + M++A+  +A+
Sbjct:   561 EEAMQLAACFLAN 573

 Score = 269 (99.8 bits), Expect = 4.2e-204, Sum P(5) = 4.2e-204
 Identities = 54/77 (70%), Positives = 59/77 (76%)

Query:   608 VTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQY 667
             +   +GFVQNSF+SGLTPTEFFFHTM GREGLVDTAVKTAETGY+QRRLVK LEDL V Y
Sbjct:   825 IPAARGFVQNSFYSGLTPTEFFFHTMAGREGLVDTAVKTAETGYLQRRLVKCLEDLVVHY 884

Query:   668 DMSFDAAFYGQTDCISG 684
             D +   A     D I G
Sbjct:   885 DGTVRNAVNEMVDTIYG 901

 Score = 186 (70.5 bits), Expect = 2.8e-107, Sum P(4) = 2.8e-107
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIA 73
             +LM N+SNLVTP+NGE+LIAATQDFITGGYLLTQK  F  + + M++A+  +A
Sbjct:   520 ILMGNQSNLVTPKNGEILIAATQDFITGGYLLTQKEVFLTKEEAMQLAACFLA 572

 Score = 169 (64.5 bits), Expect = 4.2e-204, Sum P(5) = 4.2e-204
 Identities = 51/146 (34%), Positives = 74/146 (50%)

Query:  1001 PVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXXXXXX 1060
             PV+L    D++ A++    D  L+A+E+       L + EF +   ++F  D+       
Sbjct:   916 PVDLVHQYDNLRAQHPQGKDRPLNAEEMSEALETLLRTPEFAE-ARDDFKLDVRNHINT- 973

Query:  1061 XXXXXVTSHQDKVSQPLREQI-LSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPAT 1119
                  V+    ++ +   + I L HQ +     +   F          ++Y RA  EP T
Sbjct:   974 -----VSKRIGQLQKRYEKCIDLCHQIECLTTEQLLQF-----VRRINDRYNRAVTEPGT 1023

Query:  1120 AVGALAAQSIGEPGTQMTLKTFHFAG 1145
             AVGA+AAQSIGEPGTQMTLKTFHFAG
Sbjct:  1024 AVGAIAAQSIGEPGTQMTLKTFHFAG 1049

 Score = 137 (53.3 bits), Expect = 4.6e-116, Sum P(3) = 4.6e-116
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA-----VPRSEP 713
             D  FDAA+YGQTD I+GVSE II+G+P  +GTG+ KLLQ      VP  EP
Sbjct:  1319 DHLFDAAYYGQTDAINGVSERIILGMPACIGTGIFKLLQQHEDKQVPPIEP 1369

 Score = 79 (32.9 bits), Expect = 7.9e-148, Sum P(5) = 7.9e-148
 Identities = 31/119 (26%), Positives = 52/119 (43%)

Query:   304 PLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLS--IMAH 361
             P L++N ++  P  + + ++L  P  + P+ I  ++      L    PS+H  +  +   
Sbjct:   372 PNLMIN-QVGVP--VRVAKILTYPERVNPANIRHMRE-----LVRNGPSMHPGANYVQQR 423

Query:   362 RAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
              +    +  +   E V         GD +  HL   +       PSLHK+SIM HRAKV
Sbjct:   424 GSSFKKYLAYGNREKVAQELKC---GDVVERHLRDGDIVLFNRQPSLHKMSIMCHRAKV 479


>WB|WBGene00004411 [details] [associations]
            symbol:rpc-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
            [GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
            HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
            ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
            EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
            UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
            NextBio:897062 Uniprot:Q18566
        Length = 1400

 Score = 628 (226.1 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 133/256 (51%), Positives = 176/256 (68%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTR---GISG-HLTVS 1200
             GE+C+YIEEV++PDD F+L+KL+  RIRLL LEV ++SI Y I  ++    + G  +   
Sbjct:  1124 GEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRGCKIVAH 1183

Query:  1201 GHSFLILKPKDSSK-SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVE 1259
             G + + ++P  +SK S    M  +K  L +VV+KG+  +NR VIH ++ +G   Y LLVE
Sbjct:  1184 GKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DFYSLLVE 1242

Query:  1260 GDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPM 1319
             G + R V+++ GV   K + NN   V   LGIEAARS I+ EI   M+ HG+ +D RH M
Sbjct:  1243 GTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGLDRRHVM 1302

Query:  1320 LVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECII 1379
             L+AD+MT +GEVLGITR+GL KMK+SVL LASFE T DHLF+AAF+ Q D I GVSECII
Sbjct:  1303 LLADVMTYRGEVLGITRNGLVKMKDSVLLLASFEKTMDHLFEAAFFSQRDVIHGVSECII 1362

Query:  1380 MGLPMNVGTGLIKLLQ 1395
             MG PM VGTG  KL+Q
Sbjct:  1363 MGTPMTVGTGTFKLMQ 1378

 Score = 533 (192.7 bits), Expect = 2.4e-168, Sum P(5) = 2.4e-168
 Identities = 126/271 (46%), Positives = 176/271 (64%)

Query:   745 SVKVTLELWN-PGDYKLS-QDGVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGR 802
             S ++TL+ ++  G   ++   GVPRIKEIINA + ISTPIITA L    D   AR VK R
Sbjct:  1058 STQMTLKTFHFAGVASMNITQGVPRIKEIINAVKTISTPIITAALLDPYDESLARRVKAR 1117

Query:   803 LERTTLGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTR---GISG 859
             +E+TTLGE+C+YIEEV++PDD F+L+KL+  RIRLL LEV ++SI Y I  ++    + G
Sbjct:  1118 IEKTTLGEICDYIEEVYLPDDYFLLVKLNSKRIRLLQLEVCMESISYAIATSKVCPQMRG 1177

Query:   860 -HLTVSGHSFLILKPKDSSK-SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTK 917
               +   G + + ++P  +SK S    M  +K  L +VV+KG+  +NR VIH ++ +G   
Sbjct:  1178 CKIVAHGKTMMAIRPPSTSKLSKTMTMQILKYSLANVVVKGIPSVNRCVIHADEKKG-DF 1236

Query:   918 YKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSI 977
             Y LLVEG + R V+++ GV   K + NN   V   LGIEAARS I+ EI   M+ HG+ +
Sbjct:  1237 YSLLVEGTDFRSVLSSVGVDPRKTNFNNALVVADVLGIEAARSCIINEIIATMDAHGIGL 1296

Query:   978 DFRHPMLVADLMTSKGEVLG---NGTPVELK 1005
             D RH ML+AD+MT +GEVLG   NG  V++K
Sbjct:  1297 DRRHVMLLADVMTYRGEVLGITRNGL-VKMK 1326

 Score = 515 (186.3 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 105/195 (53%), Positives = 133/195 (68%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A  LM  K+NL+TPR+GE L+AA QDFITGGYLLT K+ F  RA+  R A+ LI D S  
Sbjct:   515 ASELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALI-DAS-- 571

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFC 537
                 K+ +     P    R   +WTGKQ+  LI++P++   V+ NL  K ++YT N E C
Sbjct:   572 ---AKKQTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELC 628

Query:   538 HRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLM 597
              +DSYVI+RNS LLAG +DKS LGS  K N+FY+L+RD+GED AV AMWRL+RM   +L 
Sbjct:   629 SKDSYVIIRNSVLLAGCLDKSLLGSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLS 688

Query:   598 NRGFSIGIGDVTPGQ 612
             NRGFSIGIGDV P +
Sbjct:   689 NRGFSIGIGDVRPSE 703

 Score = 483 (175.1 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 112/285 (39%), Positives = 162/285 (56%)

Query:    93 VQQQSHIQIVSKNLYCQ-DPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYI 151
             ++Q +H+ I +  LY   + +  P  +G LD +MG + K   C+TCG  L+DCVGHFGY 
Sbjct:    28 MRQTAHVPIFNNKLYEDVEGKLQPANYGPLDPKMGVSTKTGTCSTCGLGLTDCVGHFGYF 87

Query:   152 DLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKK 211
             DL +PVFHIG+F+  I +LQ ICKN  C+ +LL  E+   F  ++ NP L YL RK+L K
Sbjct:    88 DLDVPVFHIGFFKLTIQLLQCICKN--CSSILLTPEQHRVFSRQVMNPNLDYLHRKALHK 145

Query:   212 KILETTKKVSVCPHCGEINGVVKKC--GLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVK 269
             +I+   KK S C HCG  NG VKK    +LKI+             +  D L ++     
Sbjct:   146 RIVAACKKGSTCSHCGLKNGTVKKAVGAVLKIAFAS---------PVSVDELGKFATMFS 196

Query:   270 FNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNA-ELSKPSDLILTRLLVPPN 328
              N E+  H +      LNPL V +LF  I   DIP+L++ + E   P+DL+LTR+ VPP 
Sbjct:   197 SNQEVGDHVRKMKFTLLNPLFVQKLFSNIKEGDIPVLMVRSGEEKHPNDLLLTRMPVPPV 256

Query:   329 CIRPSVISDLKS---DNDVVLFNRQPSLHKLSIMAHRAKVLPHRT 370
             CIRPSV+S++K+   ++DV +   +  L    +  H+    P +T
Sbjct:   257 CIRPSVVSEVKAGTTEDDVTMKLMEIMLTNDVLKKHKRDGAPSKT 301

 Score = 435 (158.2 bits), Expect = 7.4e-178, Sum P(5) = 7.4e-178
 Identities = 90/135 (66%), Positives = 102/135 (75%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             DNDVVLFNRQPSLHK+SIM+HRAKV+P RTFRFNEC CTPYNADFDGDEMN+HLPQT EA
Sbjct:   452 DNDVVLFNRQPSLHKISIMSHRAKVMPGRTFRFNECACTPYNADFDGDEMNLHLPQTYEA 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             +AEA                LM  K+NL+TPR+GE L+AA QDFITGGYLLT K+ F  R
Sbjct:   512 KAEA--------------SELMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPR 557

Query:   461 AQTMRIASTLIADTS 475
             A+  R A+ LI D S
Sbjct:   558 AEVYRFAAALI-DAS 571

 Score = 275 (101.9 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 53/61 (86%), Positives = 55/61 (90%)

Query:   609 TP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQY 667
             TP  +GFV NSF+SGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVK LEDLC  Y
Sbjct:   823 TPEAKGFVANSFYSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKCLEDLCASY 882

Query:   668 D 668
             D
Sbjct:   883 D 883

 Score = 159 (61.0 bits), Expect = 4.3e-103, Sum P(5) = 4.3e-103
 Identities = 32/51 (62%), Positives = 39/51 (76%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLI 72
             LM  K+NL+TPR+GE L+AA QDFITGGYLLT K+ F  RA+  R A+ LI
Sbjct:   518 LMNVKNNLITPRSGEPLVAAIQDFITGGYLLTHKDTFLPRAEVYRFAAALI 568

 Score = 152 (58.6 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 31/42 (73%), Positives = 32/42 (76%)

Query:  1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             E C  K  RA  EP TAVGA+AA SIGEP TQMTLKTFHFAG
Sbjct:  1029 ELCYYKVARAITEPGTAVGAIAATSIGEPSTQMTLKTFHFAG 1070

 Score = 133 (51.9 bits), Expect = 2.8e-126, Sum P(5) = 2.8e-126
 Identities = 26/39 (66%), Positives = 29/39 (74%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             D  F+AAF+ Q D I GVSECIIMG PM VGTG  KL+Q
Sbjct:  1340 DHLFEAAFFSQRDVIHGVSECIIMGTPMTVGTGTFKLMQ 1378

 Score = 85 (35.0 bits), Expect = 1.6e-190, Sum P(6) = 1.6e-190
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             GD +  HL   +       PSLHK+SIM+HRAKV+
Sbjct:   443 GDTIERHLDDNDVVLFNRQPSLHKISIMSHRAKVM 477

 Score = 45 (20.9 bits), Expect = 5.9e-137, Sum P(5) = 5.9e-137
 Identities = 15/55 (27%), Positives = 25/55 (45%)

Query:   378 CTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLS-IMAHRAKVLMANKSNLVTP 431
             C+ Y  + +  ++      TEE   E++  L +LS I  H  +V + N S    P
Sbjct:   720 CSQYIKELEEGKLKAQPGCTEEETLESI-ILRELSTIRDHAGQVCLRNLSKYNAP 773

 Score = 44 (20.5 bits), Expect = 1.3e-153, Sum P(5) = 1.3e-153
 Identities = 18/95 (18%), Positives = 39/95 (41%)

Query:   938 GVKCSSNNTYEVYKTLGIEAARSTIMTEIKLV---MENHGMSIDFRHPMLVADLMTSKGE 994
             G     N  Y + +  G +AA   +    ++    + N G SI          L+  KG+
Sbjct:   652 GSSSKVNIFYMLMRDYGEDAAVDAMWRLARMAPVFLSNRGFSIGIGDVRPSEQLLREKGQ 711

Query:   995 VLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEIL 1029
             ++ NG   +  + + ++  +   ++ P  + +E L
Sbjct:   712 LVDNGYS-KCSQYIKEL-EEGKLKAQPGCTEEETL 744

 Score = 37 (18.1 bits), Expect = 1.8e-178, Sum P(6) = 1.8e-178
 Identities = 7/15 (46%), Positives = 10/15 (66%)

Query:  1139 KTFHFAGEVCEYIEE 1153
             K  HFA ++ EYI +
Sbjct:   956 KYVHFADKLSEYITQ 970


>DICTYBASE|DDB_G0277199 [details] [associations]
            symbol:rpc1 "RNA polymerase III, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0032549
            "ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
            from RNA polymerase III promoter" evidence=ISS] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
            KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
            STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
            KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
        Length = 1450

 Score = 590 (212.7 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 120/257 (46%), Positives = 168/257 (65%)

Query:    81 GLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQN 140
             G I+  +  ED + + SH+QIV++ L+    +R P P+G+LD ++GT+ K+A CTTCG +
Sbjct:    15 GHIQFGLLSEDDIVRLSHVQIVNRELF-DLVKRKPTPYGVLDNKLGTSDKQAMCTTCGLS 73

Query:   141 LSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPA 200
             + DCVGHFGYI L LPVFHIGY + ++NILQ ICK+  C+ +LL EEK   +  K+RN  
Sbjct:    74 IVDCVGHFGYIKLQLPVFHIGYLKNIMNILQMICKS--CSTILLNEEKKQYYLRKMRNKK 131

Query:   201 LSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDL 260
             +  L RKSL KKI    +K   C  CG  NG++KK G  KI HEKYK +T+     ++D 
Sbjct:   132 MDNLQRKSLLKKIFLECRKTKECLKCGSTNGMIKKSGAFKIIHEKYKGKTES----LQDY 187

Query:   261 LAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLIL 320
              A Y++A+K+NPE+++H K      LNPL  L LF+ I  +DI ++ M+  + +P  LIL
Sbjct:   188 YALYDDAIKYNPEMKSHIKKAQ-DDLNPLVALNLFKKISYQDIEIMNMDPVIGRPERLIL 246

Query:   321 TRLLVPPNCIRPSVISD 337
             T +LVPP  IRPSV  D
Sbjct:   247 TYMLVPPVSIRPSVPMD 263

 Score = 569 (205.4 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 126/271 (46%), Positives = 179/271 (66%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSG 1201
             G V  +I+EV      ++ IK+D + +  L LE++  +I   I  T+G+      +T +G
Sbjct:  1181 GHVATHIKEVVKRAGCYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNG 1240

Query:  1202 -HSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEG 1260
              +   I+ P +  +     +  +K  LP+V++KG+  +NR VI + D E   +Y+LLVEG
Sbjct:  1241 DYKLRIVPPANIREGSLYYLQFLKNNLPAVIVKGIPTVNRVVISKVD-EKQERYQLLVEG 1299

Query:  1261 DNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPML 1320
              +LR VMAT G+KG   +SN+  E   TLGIE AR+TIM+EI ++M +HGMSID RH ML
Sbjct:  1300 YDLRAVMATPGIKGTHTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVML 1359

Query:  1321 VADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIM 1380
             +ADLM+ KGE+LGITR G+AKMKESVL LASFE T+DHLFDAA + + D I GVSECIIM
Sbjct:  1360 LADLMSFKGEILGITRFGIAKMKESVLMLASFEKTTDHLFDAAVHHRQDDIVGVSECIIM 1419

Query:  1381 GLPMNVGTGLIKLLQAVPRSEPVPRTLLFDN 1411
             G+ + +GTGL KLL+   ++    ++LL  +
Sbjct:  1420 GVVIPLGTGLFKLLRKSNKNNLPKKSLLLQD 1450

 Score = 516 (186.7 bits), Expect = 5.7e-162, Sum P(5) = 5.7e-162
 Identities = 114/238 (47%), Positives = 160/238 (67%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINA++NISTPIITA L+ D D+  ARIV GR+E+TTLG V  +I+EV     
Sbjct:  1136 GVPRIKEIINAAKNISTPIITASLNCDYDIRSARIVAGRIEKTTLGHVATHIKEVVKRAG 1195

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSG-HSFLILKPKDSSKS 879
              ++ IK+D + +  L LE++  +I   I  T+G+      +T +G +   I+ P +  + 
Sbjct:  1196 CYLSIKIDKNFVDSLQLEINSKTISQSIASTKGLKLKPEQITTNGDYKLRIVPPANIREG 1255

Query:   880 FNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGV 939
                 +  +K  LP+V++KG+  +NR VI + D E   +Y+LLVEG +LR VMAT G+KG 
Sbjct:  1256 SLYYLQFLKNNLPAVIVKGIPTVNRVVISKVD-EKQERYQLLVEGYDLRAVMATPGIKGT 1314

Query:   940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
               +SN+  E   TLGIE AR+TIM+EI ++M +HGMSID RH ML+ADLM+ KGE+LG
Sbjct:  1315 HTTSNHIMECENTLGIETARNTIMSEIDMIMTSHGMSIDIRHVMLLADLMSFKGEILG 1372

 Score = 409 (149.0 bits), Expect = 5.2e-167, Sum P(5) = 5.2e-167
 Identities = 80/136 (58%), Positives = 102/136 (75%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D++LFNRQPSLHKLSIM+H+A+V+P RT RFNECVCTPYNADFDGDEMN+HLPQTEEA
Sbjct:   448 DGDIMLFNRQPSLHKLSIMSHKARVMPWRTLRFNECVCTPYNADFDGDEMNIHLPQTEEA 507

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEA               +LM   +NL+TPRNGE L+AATQDF+T  YL+++++AF+ R
Sbjct:   508 RAEAT--------------ILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553

Query:   461 AQTMRIASTLIADTSD 476
              +   +  T  AD ++
Sbjct:   554 YR-FALMCTHFADANE 568

 Score = 397 (144.8 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 79/195 (40%), Positives = 123/195 (63%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A +LM   +NL+TPRNGE L+AATQDF+T  YL+++++AF+ R +   +  T  AD ++ 
Sbjct:   511 ATILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYERYR-FALMCTHFADANEH 569

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFC 537
               +          P   ++   +WTGKQIF ++L+P+    V  N +T+ R Y+ N   C
Sbjct:   570 IDL---------PPPAILKPVELWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMC 620

Query:   538 HRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLM 597
              +D YV  RNSEL+ GS+DKS +G G K ++F+IL+RDF   +A   M RL+++ + +L 
Sbjct:   621 PKDGYVYFRNSELMCGSIDKSIIGGGNKNSLFHILMRDFSPTIAANCMTRLAKLCARFLG 680

Query:   598 NRGFSIGIGDVTPGQ 612
             ++GFSIGI D+ P +
Sbjct:   681 DQGFSIGIPDIKPAE 695

 Score = 253 (94.1 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 49/73 (67%), Positives = 57/73 (78%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSF 671
             +GFV NSF++G+ PTEFFFHTMGGREGLVDTAVKTAETGYMQRRL+K+LEDL   YD + 
Sbjct:   819 KGFVSNSFYTGMIPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLMKALEDLSTHYDYTV 878

Query:   672 DAAFYGQTDCISG 684
               +  G    I G
Sbjct:   879 RDSIGGIVQFIYG 891

 Score = 177 (67.4 bits), Expect = 1.6e-127, Sum P(6) = 1.6e-127
 Identities = 45/101 (44%), Positives = 58/101 (57%)

Query:  1104 EACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFIL 1163
             + C +KY RA+IEP TAVGA+ AQSIGEPGTQMTLKTFHFAG V      + VP    I+
Sbjct:  1086 DICLDKYSRARIEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG-VASMNVTLGVPRIKEII 1144

Query:  1164 IKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHL--TVSGH 1202
                      ++   ++ D   Y I   R ++G +  T  GH
Sbjct:  1145 NAAKNISTPIITASLNCD---YDIRSARIVAGRIEKTTLGH 1182

 Score = 133 (51.9 bits), Expect = 5.5e-81, Sum P(4) = 5.5e-81
 Identities = 23/41 (56%), Positives = 34/41 (82%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             +LM   +NL+TPRNGE L+AATQDF+T  YL+++++AF+ R
Sbjct:   513 ILMGVTNNLITPRNGEPLVAATQDFLTASYLISRRDAFYER 553

 Score = 111 (44.1 bits), Expect = 7.2e-98, Sum P(4) = 7.2e-98
 Identities = 25/55 (45%), Positives = 36/55 (65%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDN 722
             D  FDAA + + D I GVSECIIMG+ + +GTGL KLL+   ++    ++LL  +
Sbjct:  1396 DHLFDAAVHHRQDDIVGVSECIIMGVVIPLGTGLFKLLRKSNKNNLPKKSLLLQD 1450

 Score = 71 (30.1 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             GD +  H+   +       PSLHKLSIM+H+A+V+
Sbjct:   439 GDIVERHIIDGDIMLFNRQPSLHKLSIMSHKARVM 473

 Score = 54 (24.1 bits), Expect = 1.7e-168, Sum P(6) = 1.7e-168
 Identities = 14/53 (26%), Positives = 25/53 (47%)

Query:  1001 PVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEF--LQDTSENFVR 1051
             PV+  R +  + +    R++P +   EI  L    +DS +F    D  +N +R
Sbjct:   906 PVDFLRAMMSVKSTRQCRNEPEMKPFEIRKLVESIIDSSKFEACTDLFKNEIR 958

 Score = 51 (23.0 bits), Expect = 3.6e-168, Sum P(6) = 3.6e-168
 Identities = 18/76 (23%), Positives = 32/76 (42%)

Query:   970 MENHGMSIDFRHPML-VADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEI 1028
             ME     +DF   M+ V      + E      P E+++L++ II  +   +   L   EI
Sbjct:   900 MEAKDRPVDFLRAMMSVKSTRQCRNEP--EMKPFEIRKLVESIIDSSKFEACTDLFKNEI 957

Query:  1029 LALSNETLDSKEFLQD 1044
                 N    +K ++Q+
Sbjct:   958 RVFFNGNEKTKGYIQE 973

 Score = 45 (20.9 bits), Expect = 1.9e-144, Sum P(4) = 1.9e-144
 Identities = 7/17 (41%), Positives = 15/17 (88%)

Query:   545 LRNSELLAGSMDKSTLG 561
             +R++ ++AG ++K+TLG
Sbjct:  1165 IRSARIVAGRIEKTTLG 1181

 Score = 42 (19.8 bits), Expect = 1.7e-71, Sum P(4) = 1.7e-71
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query:    23 MANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 60
             M  K   V  RN EL+  +    I GG     KN+ F+
Sbjct:   619 MCPKDGYVYFRNSELMCGSIDKSIIGG---GNKNSLFH 653

 Score = 38 (18.4 bits), Expect = 6.3e-112, Sum P(5) = 6.3e-112
 Identities = 15/56 (26%), Positives = 26/56 (46%)

Query:  1306 MENHGMSIDFRHPML-VADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLF 1360
             ME     +DF   M+ V      + E   +    + K+ ES+++ + FE  +D LF
Sbjct:   900 MEAKDRPVDFLRAMMSVKSTRQCRNEP-EMKPFEIRKLVESIIDSSKFEACTD-LF 953


>POMBASE|SPBC651.08c [details] [associations]
            symbol:rpc1 "DNA-directed RNA polymerase III complex
            large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
            pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
            "cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
            polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
            EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
            GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
            GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
            PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
            ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
            GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
        Length = 1405

 Score = 506 (183.2 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 119/285 (41%), Positives = 173/285 (60%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSGH 1202
             +V  YIEEV+ P  +++ I+++ D I  L L++ +  I   I  T  +   S  +TV+  
Sbjct:  1125 DVTSYIEEVYGPVTTYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNT 1184

Query:  1203 SFLI-LKPKDSSKSFNSKMYQM----KQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL 1257
                I +      KS  +++Y      K++LP VV+ G+  INR+VI++E   G  K +L 
Sbjct:  1185 LQQIHVHTSSDGKSSETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQES--G--KIELF 1240

Query:  1258 VEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRH 1317
             +EG  L+ VM T G+ G K S+N+  E+   LGIEAAR +I++EI   M  HG+++D RH
Sbjct:  1241 MEGTGLQAVMNTEGIVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRH 1300

Query:  1318 PMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSEC 1377
              ML+ D+MT KGEVLGITR G+AKMK+SVL LASFE T+DHLF+AA     D I G+SEC
Sbjct:  1301 IMLLGDVMTCKGEVLGITRFGVAKMKDSVLALASFEKTTDHLFNAAARFAKDSIEGISEC 1360

Query:  1378 IIMGLPMNVGTGLIKLLQAVPRSEPV-PRTLLFDNPEFHTNTLAA 1421
             I++G    +GT + +L++     E   P+ LLFD P  H   + A
Sbjct:  1361 IVLGKLAPIGTNVFQLIRRTEEEEEQKPKELLFDTPSLHQLEITA 1405

 Score = 489 (177.2 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 101/245 (41%), Positives = 148/245 (60%)

Query:    99 IQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVF 158
             +++  ++LY     R+P  HG LD  MGT+ K+ NC TCG++++DC+GHFGY+ L LPVF
Sbjct:    32 VEVSRRDLYTMT-DRSPAEHGALDLHMGTSNKQINCATCGESMADCMGHFGYVKLALPVF 90

Query:   159 HIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTK 218
             HIGYF+  + ILQ+ICK+  C+ VLL +++   F   LR P +  L R  + K+I +  K
Sbjct:    91 HIGYFKATLTILQNICKD--CSSVLLSDQEKRQFLKDLRRPGIDNLRRSQICKRINDHCK 148

Query:   219 KVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHK 278
             K+  C  C  + GVVKK G LKI HE+++   K +D   E+    ++EA+K  PE++ H 
Sbjct:   149 KMRRCSKCDAMQGVVKKAGPLKIIHERFRYVRKSQDD-EENFRHSFDEALKTIPELKMHL 207

Query:   279 KFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDL 338
                    LNPL+VL LF+ I   D  LL M+ E  +P +L+   +  PP CIRPSV  + 
Sbjct:   208 SKAH-DDLNPLKVLNLFKQITPVDCELLGMDPEHGRPENLLWRYVPAPPVCIRPSVAQEG 266

Query:   339 KSDND 343
              +  D
Sbjct:   267 ATTED 271

 Score = 446 (162.1 bits), Expect = 3.6e-142, Sum P(5) = 3.6e-142
 Identities = 109/258 (42%), Positives = 159/258 (61%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINA++ ISTPIIT  L  D D   AR+VKGR+E+T L +V  YIEEV+ P  
Sbjct:  1079 GVPRIKEIINAAKTISTPIITGQLINDRDERSARVVKGRIEKTYLKDVTSYIEEVYGPVT 1138

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSGHSFLI-LKPKDSSKS 879
             +++ I+++ D I  L L++ +  I   I  T  +   S  +TV+     I +      KS
Sbjct:  1139 TYLSIQVNFDTISKLQLDITLADIAAAIWNTPKLKIPSQQVTVNNTLQQIHVHTSSDGKS 1198

Query:   880 FNSKMYQM----KQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYG 935
               +++Y      K++LP VV+ G+  INR+VI++E   G  K +L +EG  L+ VM T G
Sbjct:  1199 SETEVYYRLQTYKRVLPDVVVAGIPTINRSVINQES--G--KIELFMEGTGLQAVMNTEG 1254

Query:   936 VKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
             + G K S+N+  E+   LGIEAAR +I++EI   M  HG+++D RH ML+ D+MT KGEV
Sbjct:  1255 IVGTKTSTNHVMEMKDVLGIEAARYSIISEIGYTMAKHGLTVDPRHIMLLGDVMTCKGEV 1314

Query:   996 LGNGTPVELKRLLDDIIA 1013
             LG  T   + ++ D ++A
Sbjct:  1315 LGI-TRFGVAKMKDSVLA 1331

 Score = 400 (145.9 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 85/196 (43%), Positives = 124/196 (63%)

Query:   421 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGI 480
             LM  K+NLV+PRNGE +IAATQDFIT  YLL+ K+ F +R     I   ++  ++ I   
Sbjct:   516 LMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYMMDASTHI--- 572

Query:   481 IKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTA----NEEF 536
                       P   ++   +WTGKQ+F++++KPNR   V  NL  K R+++       E 
Sbjct:   573 -------DLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFSRIKSKTPEM 625

Query:   537 CHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
             C +D Y+++RNSE++AG +DKS +G G K ++FY++LRD+G   A  A+ RLS+M + +L
Sbjct:   626 CPKDGYLMIRNSEIIAGVVDKSVVGDGKKDSLFYVILRDYGALEAAEAITRLSKMCARFL 685

Query:   597 MNRGFSIGIGDVTPGQ 612
              NRGFSIGI DV PG+
Sbjct:   686 GNRGFSIGIEDVQPGK 701

 Score = 393 (143.4 bits), Expect = 1.9e-162, Sum P(5) = 1.9e-162
 Identities = 84/135 (62%), Positives = 95/135 (70%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             DNDVVLFNRQPSLHKLSIMAH  KV P RT RFNECVC PYNADFDGDEMN+H+PQTEEA
Sbjct:   450 DNDVVLFNRQPSLHKLSIMAHLVKVRPWRTLRFNECVCGPYNADFDGDEMNLHVPQTEEA 509

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             + EAL               LM  K+NLV+PRNGE +IAATQDFIT  YLL+ K+ F +R
Sbjct:   510 KTEALE--------------LMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDR 555

Query:   461 AQTMRIASTLIADTS 475
                  I   ++ D S
Sbjct:   556 KSISNICCYMM-DAS 569

 Score = 236 (88.1 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 45/57 (78%), Positives = 49/57 (85%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             +GFV NSF+SGLTPTEF FH + GREGLVDTAVKTAETGYM RRL+KSLEDL   YD
Sbjct:   825 KGFVSNSFYSGLTPTEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSAYD 881

 Score = 213 (80.0 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 59/165 (35%), Positives = 78/165 (47%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSENFVRDIXXX 1056
             G+G  VE KR     +  N  R D ++   EI+   N  LD  +FL + + +F+  I   
Sbjct:   908 GDGQAVEFKRTWIHSVNLNYDRHDSAMLPYEIIDYVNRALDDPKFLTNCNRDFIETIRTF 967

Query:  1057 XXXXXXXXXVTSHQDKVSQP-LREQILSHQDKIGHGRESNPFPSACKAE----------- 1104
                       +  + +   P L E  +   D +  G E  P       E           
Sbjct:   968 VIENIAKYLASVRERRDLAPMLEEPDMDDLDDM-EGDEFAPVAKRKSVENIIRVTEKQLR 1026

Query:  1105 ----ACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
                  C EKY+RA++EP TAVGA+ AQSIGEPGTQMTLKTFHFAG
Sbjct:  1027 SFVDRCWEKYMRAKVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1071

 Score = 131 (51.2 bits), Expect = 1.0e-88, Sum P(4) = 1.0e-88
 Identities = 27/46 (58%), Positives = 33/46 (71%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             LM  K+NLV+PRNGE +IAATQDFIT  YLL+ K+ F +R     I
Sbjct:   516 LMGIKNNLVSPRNGEPIIAATQDFITAAYLLSLKDTFLDRKSISNI 561

 Score = 108 (43.1 bits), Expect = 7.9e-107, Sum P(5) = 7.9e-107
 Identities = 23/60 (38%), Positives = 33/60 (55%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPV-PRTLLFDNPEFH 726
             D  F+AA     D I G+SECI++G    +GT + +L++     E   P+ LLFD P  H
Sbjct:  1340 DHLFNAAARFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEEEEEQKPKELLFDTPSLH 1399

 Score = 74 (31.1 bits), Expect = 4.1e-166, Sum P(6) = 4.1e-166
 Identities = 17/34 (50%), Positives = 19/34 (55%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             GD +  HL   +       PSLHKLSIMAH  KV
Sbjct:   441 GDIVERHLHDNDVVLFNRQPSLHKLSIMAHLVKV 474

 Score = 40 (19.1 bits), Expect = 1.6e-108, Sum P(5) = 1.6e-108
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query:   768 IKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYI 815
             IK  + + RN   PII A  D  T      +    L+R ++  +C Y+
Sbjct:   519 IKNNLVSPRN-GEPIIAATQDFITAAYLLSLKDTFLDRKSISNICCYM 565

 Score = 37 (18.1 bits), Expect = 7.0e-43, Sum P(3) = 7.0e-43
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query:  1334 ITRHGLAKMKESVLNLASFENTSDHLFDAA 1363
             IT   L  +K++ L+  S  N   ++ DA+
Sbjct:   540 ITAAYLLSLKDTFLDRKSISNICCYMMDAS 569

 Score = 37 (18.1 bits), Expect = 2.0e-40, Sum P(2) = 2.0e-40
 Identities = 9/16 (56%), Positives = 12/16 (75%)

Query:   345 VLFNRQPSLHKLSIMA 360
             +LF+  PSLH+L I A
Sbjct:  1391 LLFDT-PSLHQLEITA 1405


>SGD|S000005642 [details] [associations]
            symbol:RPO31 "RNA polymerase III largest subunit C160"
            species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
            complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
            binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0016740 "transferase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
            EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
            EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
            GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
            eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
            PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
            RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
            DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
            PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
            KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
            Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
        Length = 1460

 Score = 549 (198.3 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 131/286 (45%), Positives = 183/286 (63%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSGH 1202
             +V  Y+++V+  + SFI +++D+  I  L LE+ I+ I   I R   +   +  + + G 
Sbjct:  1168 DVAFYVQDVYKDNLSFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGK 1227

Query:  1203 SFLIL-------KPKD---SSK--SFNSKMYQMKQL---LPSVVIKGVQGINRAVIHEED 1247
               + +       K K    S+K  S N   Y+M+QL   LP VV+KG+  I+RAVI+  D
Sbjct:  1228 DRIAINVFPEGYKAKSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRD 1287

Query:  1248 VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVME 1307
              +G  K +LLVEG  LRDVM T GV G + ++N+  EV+  LGIEAAR +I+ EI   M 
Sbjct:  1288 -DG--KRELLVEGYGLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMS 1344

Query:  1308 NHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQ 1367
             NHGMS+D RH  L+ D+MT KGEVLGITR GL+KM++SVL LASFE T+DHLFDAAFY +
Sbjct:  1345 NHGMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFYMK 1404

Query:  1368 TDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEP--VPRTLLFDN 1411
              D + GVSECII+G  M++GTG  K+++    SE   VP+  LF++
Sbjct:  1405 KDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFES 1450

 Score = 471 (170.9 bits), Expect = 7.3e-140, Sum P(4) = 7.3e-140
 Identities = 120/267 (44%), Positives = 165/267 (61%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPII A L  D D   AR+VKGR+E+T L +V  Y+++V+  + 
Sbjct:  1122 GVPRIKEIINASKVISTPIINAVLVNDNDERAARVVKGRVEKTLLSDVAFYVQDVYKDNL 1181

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI---SGHLTVSGHSFLIL-------KP 873
             SFI +++D+  I  L LE+ I+ I   I R   +   +  + + G   + +       K 
Sbjct:  1182 SFIQVRIDLGTIDKLQLELTIEDIAVAITRASKLKIQASDVNIIGKDRIAINVFPEGYKA 1241

Query:   874 KD---SSK--SFNSKMYQMKQL---LPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 925
             K    S+K  S N   Y+M+QL   LP VV+KG+  I+RAVI+  D +G  K +LLVEG 
Sbjct:  1242 KSISTSAKEPSENDVFYRMQQLRRALPDVVVKGLPDISRAVINIRD-DG--KRELLVEGY 1298

Query:   926 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 985
              LRDVM T GV G + ++N+  EV+  LGIEAAR +I+ EI   M NHGMS+D RH  L+
Sbjct:  1299 GLRDVMCTDGVIGSRTTTNHVLEVFSVLGIEAARYSIIREINYTMSNHGMSVDPRHIQLL 1358

Query:   986 ADLMTSKGEVLGNGTPVELKRLLDDII 1012
              D+MT KGEVLG  T   L ++ D ++
Sbjct:  1359 GDVMTYKGEVLGI-TRFGLSKMRDSVL 1384

 Score = 459 (166.6 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 108/274 (39%), Positives = 153/274 (55%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +GL    ++  D V Q S +++ +++L+  +  R P  +G LD +MG +     C TC  
Sbjct:    14 KGLEFSALSAADIVAQ-SEVEVSTRDLFDLEKDRAPKANGALDPKMGVSSSSLECATCHG 72

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNP 199
             NL+ C GHFG++ L LPVFHIGYF+  I ILQ ICKN  C+ +LL E     F  +LR P
Sbjct:    73 NLASCHGHFGHLKLALPVFHIGYFKATIQILQGICKN--CSAILLSETDKRQFLHELRRP 130

Query:   200 ALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGL------LKISHEKYKNRTKKK 253
              +  L R  + KKIL+  KK   C HCG +NGVVKK         LKI H+ ++    KK
Sbjct:   131 GVDNLRRMGILKKILDQCKKQRRCLHCGALNGVVKKAAAGAGSAALKIIHDTFR-WVGKK 189

Query:   254 DAIVEDL-LAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAEL 312
              A  +D+ + E+ E +  NPE+E + K   +  LNPL+ L LF+ I   D  LL ++A +
Sbjct:   190 SAPEKDIWVGEWKEVLAHNPELERYVK-RCMDDLNPLKTLNLFKQIKSADCELLGIDATV 248

Query:   313 --SKPSDLILTRLLVPPNCIRPSVI-SDLKSDND 343
                +P   I   L  PP CIRPSV+  D  + N+
Sbjct:   249 PSGRPETYIWRYLPAPPVCIRPSVMMQDSPASNE 282

 Score = 407 (148.3 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 93/218 (42%), Positives = 134/218 (61%)

Query:   407 SLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
             +LH       RA+   LM  K+NL+TP++GE +IAATQDFITG YL++ K++F++RA   
Sbjct:   518 NLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLT 577

Query:   465 RIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK 524
             ++ S +    SD  GI + F      P   ++   +WTGKQ+FSL++KPN + PV  NL 
Sbjct:   578 QLLSMM----SD--GI-EHFDIP---PPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLD 627

Query:   525 TKGRAYTANE------EFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGE 578
              K + +   +      E    D +VI+R S++L+G MDKS LG G K +VFY +LRD+G 
Sbjct:   628 AKNKVFVPPKSKSLPNEMSQNDGFVIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGP 687

Query:   579 DVAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQ 616
               A  AM R++++ + +L NRGFSIGI DVTP     Q
Sbjct:   688 QEAANAMNRMAKLCARFLGNRGFSIGINDVTPADDLKQ 725

 Score = 402 (146.6 bits), Expect = 7.4e-160, Sum P(6) = 7.4e-160
 Identities = 82/149 (55%), Positives = 106/149 (71%)

Query:   322 RLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPY 381
             R+ +  N     V+     D DVVLFNRQPSLH+LSI++H AK+ P RTFR NECVCTPY
Sbjct:   449 RMKLAKNLQIGDVVERHLEDGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPY 508

Query:   382 NADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAAT 441
             NADFDGDEMN+H+PQTEEARAEA+               LM  K+NL+TP++GE +IAAT
Sbjct:   509 NADFDGDEMNLHVPQTEEARAEAIN--------------LMGVKNNLLTPKSGEPIIAAT 554

Query:   442 QDFITGGYLLTQKNAFFNRAQTMRIASTL 470
             QDFITG YL++ K++F++RA   ++ S +
Sbjct:   555 QDFITGSYLISHKDSFYDRATLTQLLSMM 583

 Score = 240 (89.5 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 47/61 (77%), Positives = 52/61 (85%)

Query:   609 TP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQY 667
             TP  +GFV+NSFFSGL+P EF FH + GREGLVDTAVKTAETGYM RRL+KSLEDL  QY
Sbjct:   841 TPQSKGFVRNSFFSGLSPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSCQY 900

Query:   668 D 668
             D
Sbjct:   901 D 901

 Score = 159 (61.0 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 29/37 (78%), Positives = 34/37 (91%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             KY +A++EP TA+GA+ AQSIGEPGTQMTLKTFHFAG
Sbjct:  1077 KYRKARLEPGTAIGAIGAQSIGEPGTQMTLKTFHFAG 1113

 Score = 144 (55.7 bits), Expect = 1.2e-89, Sum P(5) = 1.2e-89
 Identities = 28/57 (49%), Positives = 43/57 (75%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVF 78
             LM  K+NL+TP++GE +IAATQDFITG YL++ K++F++RA   ++ S +  G + F
Sbjct:   534 LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFYDRATLTQLLSMMSDGIEHF 590

 Score = 130 (50.8 bits), Expect = 5.2e-104, Sum P(4) = 5.2e-104
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEP--VPRTLLFDN 722
             D  FDAAFY + D + GVSECII+G  M++GTG  K+++    SE   VP+  LF++
Sbjct:  1394 DHLFDAAFYMKKDAVEGVSECIILGQTMSIGTGSFKVVKGTNISEKDLVPKRCLFES 1450

 Score = 47 (21.6 bits), Expect = 2.2e-160, Sum P(6) = 2.2e-160
 Identities = 14/47 (29%), Positives = 18/47 (38%)

Query:   994 EVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKE 1040
             E+ GN  PV   R  D       +  D  L    I+  +NE L   E
Sbjct:   925 EMEGNAQPVNFNRSWDHAYNITFNNQDKGLLPYAIMETANEILGPLE 971

 Score = 43 (20.2 bits), Expect = 1.9e-74, Sum P(3) = 1.9e-74
 Identities = 18/85 (21%), Positives = 32/85 (37%)

Query:  1256 LLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLV---MENHGMS 1312
             +++ G  +   +    V G     +  Y + +  G + A + +    KL    + N G S
Sbjct:   652 VIIRGSQILSGVMDKSVLGDGKKHSVFYTILRDYGPQEAANAMNRMAKLCARFLGNRGFS 711

Query:  1313 IDFRHPMLVADLMTSKGEVLGITRH 1337
             I         DL   K E++ I  H
Sbjct:   712 IGINDVTPADDLKQKKEELVEIAYH 736

 Score = 37 (18.1 bits), Expect = 4.0e-106, Sum P(6) = 4.0e-106
 Identities = 6/33 (18%), Positives = 18/33 (54%)

Query:  1151 IEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSI 1183
             +E+  + D +F +  +  D +  + + +D+ +I
Sbjct:  1161 VEKTLLSDVAFYVQDVYKDNLSFIQVRIDLGTI 1193


>CGD|CAL0002215 [details] [associations]
            symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
            polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
            GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
            ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
            KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
        Length = 1448

 Score = 515 (186.3 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 119/267 (44%), Positives = 177/267 (66%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSGH 1202
             +V  YIE+V+  + +++ IK+D++ I  L LE+++++I   I     +      ++V+G 
Sbjct:  1160 DVAFYIEDVYKDNLAYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGK 1219

Query:  1203 SFL--ILKPKDS-SKSFNS----------KMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 1249
               +  ++  K++ ++S  +          +M  +K+ LP V IKG+  I RAVI+ +D +
Sbjct:  1220 DRINVLVNIKETKTESLRNTVDPKNALFFRMQYLKRALPGVCIKGLPNIFRAVINIKD-D 1278

Query:  1250 GVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENH 1309
             G  K +LLVEG  L+DVM T G+ G K ++N+  EV + LGIEAAR +I+ EI   M NH
Sbjct:  1279 G--KKELLVEGYGLKDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNH 1336

Query:  1310 GMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTD 1369
             GMS+D RH  L+ D+MT KGEVLGITR GL+KM++SVL LASFE T+DHLFDAAF+ + D
Sbjct:  1337 GMSVDPRHIQLLGDVMTYKGEVLGITRFGLSKMRDSVLQLASFEKTTDHLFDAAFFMKND 1396

Query:  1370 CISGVSECIIMGLPMNVGTGLIKLLQA 1396
              I GVSECII+G  M++GTG  KL+++
Sbjct:  1397 KIEGVSECIILGQTMSIGTGSFKLVKS 1423

 Score = 448 (162.8 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 108/272 (39%), Positives = 154/272 (56%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +GL  G ++ +D V Q S ++I +++LY  +  R P  HG LD +MG +     C+TC  
Sbjct:    14 KGLEFGALSAKDIVAQ-SEVEIQTRDLYDLEKGRVPKEHGALDTKMGISSNAQECSTCHG 72

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNP 199
             NL+ C GHFG+I L LPVFH+GYF+ +I++LQ ICK+  CA VLL E+    +   LR P
Sbjct:    73 NLASCHGHFGHIRLALPVFHVGYFKSIISVLQCICKS--CAAVLLDEQSKRQYLNDLRKP 130

Query:   200 ALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCG------LLKISHEKYKNRTKKK 253
              +  L R  + KKI+E  KK   C  C  INGVVKK         LKI H+ ++    KK
Sbjct:   131 HIDNLRRMKIIKKIIEQCKKQRRCLKCNHINGVVKKAASGAGPAALKIVHDTFR-WIGKK 189

Query:   254 DAIVEDLLAEYNEAVKF-NPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMN-AE 311
             + + + +  E  + V   NPE+E   K  +   LNPL+ L LF+ I  +D  L  ++ A+
Sbjct:   190 ETLEKTIWDEELDQVFIRNPELEKFAK-RIHDDLNPLKTLNLFKQITPQDCELFGLDPAK 248

Query:   312 LSKPSDLILTRLLVPPNCIRPSVISDLKSDND 343
               +P   I   L  PP CIRPSV+ D +S+ D
Sbjct:   249 GGRPEMYIWRYLPAPPVCIRPSVMMDSQSNED 280

 Score = 447 (162.4 bits), Expect = 8.0e-139, Sum P(5) = 8.0e-139
 Identities = 112/265 (42%), Positives = 166/265 (62%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPII A L  D D   AR+ KGR+E+T L +V  YIE+V+  + 
Sbjct:  1114 GVPRIKEIINASKVISTPIINAVLVNDDDEIAARVAKGRIEKTLLEDVAFYIEDVYKDNL 1173

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGIS---GHLTVSGHSFL--ILKPKDS-S 877
             +++ IK+D++ I  L LE+++++I   I     +      ++V+G   +  ++  K++ +
Sbjct:  1174 AYLSIKIDLETIDKLQLELNLENIAVAIANAPKLKIAQSDVSVTGKDRINVLVNIKETKT 1233

Query:   878 KSFNS----------KMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNL 927
             +S  +          +M  +K+ LP V IKG+  I RAVI+ +D +G  K +LLVEG  L
Sbjct:  1234 ESLRNTVDPKNALFFRMQYLKRALPGVCIKGLPNIFRAVINIKD-DG--KKELLVEGYGL 1290

Query:   928 RDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVAD 987
             +DVM T G+ G K ++N+  EV + LGIEAAR +I+ EI   M NHGMS+D RH  L+ D
Sbjct:  1291 KDVMNTEGIVGTKTTTNHVLEVNQILGIEAARGSIIKEIDYTMSNHGMSVDPRHIQLLGD 1350

Query:   988 LMTSKGEVLGNGTPVELKRLLDDII 1012
             +MT KGEVLG  T   L ++ D ++
Sbjct:  1351 VMTYKGEVLGI-TRFGLSKMRDSVL 1374

 Score = 409 (149.0 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 93/217 (42%), Positives = 139/217 (64%)

Query:   407 SLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
             +LH       RA+   LM  K+NL+TP++GE +IAATQDFITG YL++ K++FF+RA  +
Sbjct:   514 NLHVPQTEEARAEAINLMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLV 573

Query:   465 RIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK 524
             ++ S +++D +DI     +F      P +F +  ++WTGKQ+FSL++KPN+   V  NL 
Sbjct:   574 QLLS-MMSD-ADI-----QFDIPP--PTIF-KPVMLWTGKQVFSLLIKPNKKSNVVINLD 623

Query:   525 TKGRAYTANE-----EFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
              K + +   +     E    D +V++R S++L+G MDKSTLG G K +VFY +LRD+G  
Sbjct:   624 AKNKTFHPPKKGLPNEMSPNDGFVVIRGSKILSGLMDKSTLGDGKKHSVFYTILRDYGPQ 683

Query:   580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQGFVQ 616
              A  AM R++++ + +L NRGFSIGI DVTP     Q
Sbjct:   684 EAAAAMNRMAKLCARFLGNRGFSIGINDVTPADELKQ 720

 Score = 408 (148.7 bits), Expect = 2.4e-157, Sum P(5) = 2.4e-157
 Identities = 83/137 (60%), Positives = 107/137 (78%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVVLFNRQPSLH+LSI++H AK+ P RTFR NECVCTPYNADFDGDEMN+H+PQTEEA
Sbjct:   464 DGDVVLFNRQPSLHRLSILSHYAKIRPWRTFRLNECVCTPYNADFDGDEMNLHVPQTEEA 523

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEA+               LM  K+NL+TP++GE +IAATQDFITG YL++ K++FF+R
Sbjct:   524 RAEAIN--------------LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDR 569

Query:   461 AQTMRIASTLIADTSDI 477
             A  +++ S +++D +DI
Sbjct:   570 ATLVQLLS-MMSD-ADI 584

 Score = 243 (90.6 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 48/61 (78%), Positives = 52/61 (85%)

Query:   609 TP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQY 667
             TP  +GFV+NSFFSGLTP EF FH + GREGLVDTAVKTAETGYM RRL+KSLEDL  QY
Sbjct:   836 TPQSKGFVRNSFFSGLTPPEFLFHAISGREGLVDTAVKTAETGYMSRRLMKSLEDLSSQY 895

Query:   668 D 668
             D
Sbjct:   896 D 896

 Score = 175 (66.7 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 52/159 (32%), Positives = 82/159 (51%)

Query:  1001 PVELKRLLDDIIAKNSSRSDPSLSAQEIL--ALSNETLDSK-EFLQ--DTSENFVRDIXX 1055
             P +++ L+D ++A   ++    L   + L  AL+++  + K E++   D   +F + I  
Sbjct:   951 PYQIEELVDSVLAPLENK----LIRYDNLGNALNDKEKEQKIEYIDQNDGERDFYKSIRD 1006

Query:  1056 XXXXXXXXXXVTSHQDKV----SQPLREQILSHQDKI---GHGRESNPFPSACKA--EAC 1106
                       +   +  +    + P  ++I+  +D +      + S     A K   E C
Sbjct:  1007 FLTKKSIRLALLREERGLKAYFTAPTEDEIVMDEDAVKVKAIDQLSKISSKAVKTFLEQC 1066

Query:  1107 REKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
               KY RA++EP TAVGA+ AQSIGEPGTQMTLKTFHFAG
Sbjct:  1067 LYKYSRARVEPGTAVGAIGAQSIGEPGTQMTLKTFHFAG 1105

 Score = 146 (56.5 bits), Expect = 6.0e-88, Sum P(4) = 6.0e-88
 Identities = 27/50 (54%), Positives = 41/50 (82%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTL 71
             LM  K+NL+TP++GE +IAATQDFITG YL++ K++FF+RA  +++ S +
Sbjct:   530 LMGVKNNLLTPKSGEPIIAATQDFITGSYLISHKDSFFDRATLVQLLSMM 579

 Score = 113 (44.8 bits), Expect = 6.6e-104, Sum P(5) = 6.6e-104
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA 707
             D  FDAAF+ + D I GVSECII+G  M++GTG  KL+++
Sbjct:  1384 DHLFDAAFFMKNDKIEGVSECIILGQTMSIGTGSFKLVKS 1423

 Score = 70 (29.7 bits), Expect = 5.5e-160, Sum P(6) = 5.5e-160
 Identities = 28/110 (25%), Positives = 45/110 (40%)

Query:   311 ELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRT 370
             E++ P D +   L  P  C R +     K     ++ N  P +H  +    +      R 
Sbjct:   387 EVAVP-DRVAKVLTYPEKCTRYN-----KKKLQKLVVNG-PDIHPGANYVMKQNEPGKRN 439

Query:   371 FRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
              RF + V         GD +  H+   +       PSLH+LSI++H AK+
Sbjct:   440 LRFGDRVKLAKTLQI-GDVVERHIEDGDVVLFNRQPSLHRLSILSHYAKI 488

 Score = 44 (20.5 bits), Expect = 3.1e-110, Sum P(6) = 3.1e-110
 Identities = 8/33 (24%), Positives = 20/33 (60%)

Query:  1151 IEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSI 1183
             IE+  + D +F +  +  D +  L +++D+++I
Sbjct:  1153 IEKTLLEDVAFYIEDVYKDNLAYLSIKIDLETI 1185


>ASPGD|ASPL0000047704 [details] [associations]
            symbol:AN10316 species:162425 "Emericella nidulans"
            [GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
            HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
            EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
        Length = 1445

 Score = 474 (171.9 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 116/288 (40%), Positives = 167/288 (57%)

Query:  1143 FAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI-SGHLTVSG 1201
             F  ++  Y+ E +   ++++ +K++ D I  L L++ +  IR  IE  R   S  L +  
Sbjct:  1146 FLRDIIHYVRETWTGKEAYLTVKINWDTISALELDLTVGKIRQAIENHRRFKSEDLKLRS 1205

Query:  1202 -----HSFLILKPKDSSKSFNS-----------KMYQMKQLLPSVVIKGVQGINRAVIHE 1245
                  H  + L P    K   +           ++  +K+LLP + + G    NRA+I  
Sbjct:  1206 TRSHIHIHIDLDPASKEKLSKTEIAATSSDPFLRLKALKRLLPDIQVLGHPQANRAIIRT 1265

Query:  1246 EDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLV 1305
             +D        LLVEG  LR  M T G+ G++  SNN  E  + LGIEAARSTI+ EI  V
Sbjct:  1266 DDKSDTNT--LLVEGYGLRQCMNTVGIDGLRTRSNNVMETREVLGIEAARSTIIQEISEV 1323

Query:  1306 MENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFY 1365
             M++  M ID RH  L+AD+MT KGEVLGITR GLAKM++SVL LASFE T+DHLFDA   
Sbjct:  1324 MKD--MDIDPRHMQLLADVMTYKGEVLGITRFGLAKMRDSVLQLASFEKTADHLFDAGGA 1381

Query:  1366 GQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPV--PRTLLFDN 1411
             G+TD I GVSECIIMG  +++GTG +++++ +   E    P+  +F++
Sbjct:  1382 GRTDLIEGVSECIIMGKTVSLGTGAMEVVRKMNFFEGQIGPKKTIFED 1429

 Score = 442 (160.7 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 102/267 (38%), Positives = 146/267 (54%)

Query:    87 VTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVG 146
             V   D +  Q  +++  +  +  +  R+ +P+G LD RMG + K + C TCG  L  C G
Sbjct:    31 VLSNDDIVSQGVVEVSDRKFFNLENDRSIVPNGPLDARMGISNKTSTCQTCGGALQVCNG 90

Query:   147 HFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVR 206
             HFG++ L LP FH+GYF+ VI+ILQ ICK   C+ +LL E +   F  ++R P L  L R
Sbjct:    91 HFGHVRLVLPAFHVGYFKRVISILQEICKE--CSHILLPEAERRAFLREMRRPRLDNLRR 148

Query:   207 KSLKKKILETTKKVSVCPHCGEINGVVKKCGL--LKISHEKYK----NRTKKK----DAI 256
               + K++ +  +K   C +CG +NGVVKK G   LKI+H+K++    + + KK      I
Sbjct:   149 MQIAKRVNDRCRKTRTCENCGAVNGVVKKTGTSSLKITHDKFRAFNASTSAKKIPPPSKI 208

Query:   257 VEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPS 316
             V D   E  EA   NPE+E H K      LN L VL LF+ I   D  LL ++ + ++P 
Sbjct:   209 VFDRSLE--EARSSNPEVEKHHKKAQ-DDLNALRVLNLFKRISDSDCELLGLDPKEARPE 265

Query:   317 DLILTRLLVPPNCIRPSVISDLKSDND 343
               +   +  PP CIRPSV  D  S  D
Sbjct:   266 MFLWQFIPAPPVCIRPSVGQDASSTED 292

 Score = 388 (141.6 bits), Expect = 1.3e-149, Sum P(5) = 1.3e-149
 Identities = 78/126 (61%), Positives = 92/126 (73%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLHKLSI++H AKV PHRTFR NECVC PYNADFDGDEMN+H+PQTEEA
Sbjct:   470 DGDIVLFNRQPSLHKLSILSHFAKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEA 529

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEA+               LM  K+NL TP+NGE +I A QDFI+  YLL+ K+ FF+R
Sbjct:   530 RAEAME--------------LMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDR 575

Query:   461 AQTMRI 466
                 +I
Sbjct:   576 RSFTQI 581

 Score = 387 (141.3 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 87/205 (42%), Positives = 126/205 (61%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A  LM  K+NL TP+NGE +I A QDFI+  YLL+ K+ FF+R    +I   ++   +  
Sbjct:   533 AMELMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQT-- 590

Query:   478 CGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYT---ANE 534
                  RF      P VF +  ++WTGKQ+F+++++PN+D PV  NL    + +     N+
Sbjct:   591 -----RFDLPP--PAVF-KPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQFKPPKGNQ 642

Query:   535 --EFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMT 592
               +    DS++++RNSE++ G MDKST+GSG K NVFYI+LRDFG   A   M RLS+++
Sbjct:   643 PRDLDPNDSWLVVRNSEVMCGVMDKSTVGSGKKDNVFYIMLRDFGPAAAAEGMNRLSKLS 702

Query:   593 SFYLMNRGFSIGIGDVTPGQGFVQN 617
             + +  N GFSIGI DV P    VQ+
Sbjct:   703 ARWFSNMGFSIGITDVYPSDRLVQS 727

 Score = 355 (130.0 bits), Expect = 1.1e-125, Sum P(5) = 1.1e-125
 Identities = 100/265 (37%), Positives = 146/265 (55%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTP+I+  L +  ++  AR+ KGR+E+T L ++  Y+ E +   +
Sbjct:  1103 GVPRIKEIINASKEISTPVISCELVEKRNIVAARMAKGRIEKTFLRDIIHYVRETWTGKE 1162

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI-SGHLTVSG-----HSFLILKPKDSS 877
             +++ +K++ D I  L L++ +  IR  IE  R   S  L +       H  + L P    
Sbjct:  1163 AYLTVKINWDTISALELDLTVGKIRQAIENHRRFKSEDLKLRSTRSHIHIHIDLDPASKE 1222

Query:   878 KSFNSKM--------YQMKQLLPSVVIKGVQGINRA--VIHEEDVEGVTKYKLLVEGDNL 927
             K   +++         ++K L   +    V G  +A   I   D +  T   LLVEG  L
Sbjct:  1223 KLSKTEIAATSSDPFLRLKALKRLLPDIQVLGHPQANRAIIRTDDKSDTN-TLLVEGYGL 1281

Query:   928 RDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVAD 987
             R  M T G+ G++  SNN  E  + LGIEAARSTI+ EI  VM++  M ID RH  L+AD
Sbjct:  1282 RQCMNTVGIDGLRTRSNNVMETREVLGIEAARSTIIQEISEVMKD--MDIDPRHMQLLAD 1339

Query:   988 LMTSKGEVLGNGTPVELKRLLDDII 1012
             +MT KGEVLG  T   L ++ D ++
Sbjct:  1340 VMTYKGEVLGI-TRFGLAKMRDSVL 1363

 Score = 239 (89.2 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query:   610 PGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             P +GFV+NSFFSGL P EF FH M GREGLVDTAVKTAETGYM RRL+KSLEDL   YD
Sbjct:   844 PSKGFVRNSFFSGLLPYEFIFHAMSGREGLVDTAVKTAETGYMSRRLMKSLEDLSTGYD 902

 Score = 175 (66.7 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 57/180 (31%), Positives = 86/180 (47%)

Query:   970 MENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEIL 1029
             ME     + F    + A+  T K E     +P E+  + +++++K  ++    L+  +++
Sbjct:   927 MEGKAKPVHFDRTFIHAETTTYKNEERSL-SPAEIMEVCEEMLSKERAK----LARYDLM 981

Query:  1030 ALSNETLDSKEFLQDTSENFVRD-IXXXXXXXXXXXXVTSHQDKVSQPLREQI---LSHQ 1085
                 + +D  +   D  E+  RD +                +   S P  E+    L+H 
Sbjct:   982 GAELDYMDRSDHGVDQFES-ARDFLDSIQQYVQTKADKLISRGGDSDPSDERTIKGLNHT 1040

Query:  1086 DKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
              K+   R    F     AE C  KY +AQ+EP  AVGA+ AQSIGEPGTQMTLKTFHFAG
Sbjct:  1041 GKLTE-RTLRTFI----AE-CLMKYKKAQVEPGHAVGAVGAQSIGEPGTQMTLKTFHFAG 1094

 Score = 121 (47.7 bits), Expect = 2.2e-80, Sum P(4) = 2.2e-80
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVF 78
             LM  K+NL TP+NGE +I A QDFI+  YLL+ K+ FF+R    +I   ++  +  F
Sbjct:   536 LMGVKNNLATPKNGEPIIGAIQDFISAAYLLSSKDNFFDRRSFTQICLYMLGPQTRF 592

 Score = 103 (41.3 bits), Expect = 2.2e-99, Sum P(5) = 2.2e-99
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPV--PRTLLFDN 722
             D  FDA   G+TD I GVSECIIMG  +++GTG +++++ +   E    P+  +F++
Sbjct:  1373 DHLFDAGGAGRTDLIEGVSECIIMGKTVSLGTGAMEVVRKMNFFEGQIGPKKTIFED 1429

 Score = 69 (29.3 bits), Expect = 7.1e-152, Sum P(6) = 7.1e-152
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query:   386 DGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKV 420
             +GD +  H+   +       PSLHKLSI++H AKV
Sbjct:   460 EGDIVERHIEDGDIVLFNRQPSLHKLSILSHFAKV 494

 Score = 44 (20.5 bits), Expect = 3.5e-138, Sum P(6) = 3.5e-138
 Identities = 16/77 (20%), Positives = 34/77 (44%)

Query:  1082 LSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTF 1141
             L + D+  HG +   F SA       ++YV+ + +   + G  +     +P  + T+K  
Sbjct:   985 LDYMDRSDHGVDQ--FESARDFLDSIQQYVQTKADKLISRGGDS-----DPSDERTIKGL 1037

Query:  1142 HFAGEVCEYIEEVFVPD 1158
             +  G++ E     F+ +
Sbjct:  1038 NHTGKLTERTLRTFIAE 1054

 Score = 44 (20.5 bits), Expect = 1.9e-52, Sum P(3) = 1.9e-52
 Identities = 20/98 (20%), Positives = 45/98 (45%)

Query:   808 LGEVCEYIEEVFVPDD---SFI--LIKLDMDRIRLLHLEVDIDS----IRYCIERTRGIS 858
             L E+C+    + +P+    +F+  + +  +D +R + +   ++      R C E    ++
Sbjct:   114 LQEICKECSHILLPEAERRAFLREMRRPRLDNLRRMQIAKRVNDRCRKTRTC-ENCGAVN 172

Query:   859 GHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI 896
             G +  +G S L +   D  ++FN+     K   PS ++
Sbjct:   173 GVVKKTGTSSLKIT-HDKFRAFNASTSAKKIPPPSKIV 209


>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase 3
            largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
            "DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 387 (141.3 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 75/135 (55%), Positives = 98/135 (72%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLH++SIM H+AK++  +TFRFNECVC+PYNADFDGDEMN+H+PQTEEA
Sbjct:   568 DGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEA 627

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEAL               LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R
Sbjct:   628 RAEAL--------------YLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673

Query:   461 AQTMRIASTLIADTS 475
               T  +  +  +D S
Sbjct:   674 -DTFCLLCSYFSDAS 687

 Score = 319 (117.4 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 69/165 (41%), Positives = 100/165 (60%)

Query:  1252 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 1311
             T Y +LVEG++L  V+   GV      SN+   V++ LGIEAAR TI+ EIK  +E + +
Sbjct:  2188 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2247

Query:  1312 SIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCI 1371
              ID RH ML+AD+M   G++LGI R G+ K ++S L LASFE T++HLF ++F+   D I
Sbjct:  2248 DIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEI 2307

Query:  1372 SGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHT 1416
             + +SE II+G  + +GTG  +LL      +      L +  E  T
Sbjct:  2308 NNISESIIVGKNIPIGTGAFQLLYDYKFEKETKNLTLLEKAERET 2352

 Score = 310 (114.2 bits), Expect = 8.7e-115, Sum P(6) = 8.7e-115
 Identities = 73/200 (36%), Positives = 110/200 (55%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A  LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R  T  +  +  +D S  
Sbjct:   631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR-DTFCLLCSYFSDASLY 689

Query:   478 CGIIKRFSWRSWNPV-VFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN--- 533
               +          P+   ++   +WTGKQ+ S+++KPN+      N + + R Y+     
Sbjct:   690 IEL----------PIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGD 739

Query:   534 -EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMT 592
              +  C  DSYV    SEL+ GS+ K  LGS  K  +FY L+      +A+  M RLS++T
Sbjct:   740 LKHLCLNDSYVCFYKSELICGSLGKKVLGSS-KYGLFYYLIHHNSSHIALKIMNRLSKLT 798

Query:   593 SFYLMNRGFSIGIGDVTPGQ 612
             S Y  N+G +IGI DV P Q
Sbjct:   799 SRYFSNKGMTIGIDDVRPSQ 818

 Score = 298 (110.0 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 86/259 (33%), Positives = 143/259 (55%)

Query:    85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
             G ++KED ++  S ++I+++ +Y ++    P P+G+LD ++G ++  + C TC + L +C
Sbjct:    41 GIMSKEDIIKY-SEVKIMNREMY-KNNSGIPYPYGVLDLKLGAHKSNSVCETCNKKLINC 98

Query:   145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALS-Y 203
              GHFGYI+L  PVFHIGY++ +I+IL  ICK   C+ +LL +EK   F   L+  +    
Sbjct:    99 SGHFGYIELNYPVFHIGYYKYIIHILYCICKY--CSSLLLSKEKI-DFYCNLKKKSTDDS 155

Query:   204 LVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKY---KNRTKKKD---AIV 257
               +K L K+IL   KKV+ C  CG   GV+KK  ++K S +++   K+  K K+    I+
Sbjct:   156 FYKKHLFKRILNNCKKVNKCYICGNPQGVIKK--IIKPSLDQFMKLKHILKVKENGKMII 213

Query:   258 --EDLLAEYNEAVKFNPEIEA-HKKFGLIQTLNPLEVLQLFEAIPLEDI-PLLLMNAELS 313
               EDL + Y   +K    I   H K  L+   NP +++     +P   I P ++++   +
Sbjct:   214 KEEDLNSLY--VLKLFKNINPYHVK--LLNIENPEKLIITALLVPPNTIRPSVIIDEHGT 269

Query:   314 KPSDL--ILTRLLVPPNCI 330
                DL  IL+ +    N I
Sbjct:   270 AEDDLTCILSEITQLNNTI 288

 Score = 260 (96.6 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 48/59 (81%), Positives = 55/59 (93%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFVQNSF++GL+PTEFFFHTM GREGLVDTAVKTAETGYMQRRL+K+LEDL + YD S
Sbjct:   942 RGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYS 1000

 Score = 202 (76.2 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 51/156 (32%), Positives = 90/156 (57%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS +I TPI+   L+ + + ++A ++K +LE+TT+ ++C YI+E +    
Sbjct:  1827 GVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYTSRG 1886

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISG------HLTVSGHSFLILKPKDSS 877
              F+ +K + + I+ L L ++  +I+  I +   I+       H+ V     L +  K+  
Sbjct:  1887 VFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLHISLKNDE 1946

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
               F  +M  +K+ L  ++I G + I R +I +ED+E
Sbjct:  1947 FIF-FQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1981

 Score = 178 (67.7 bits), Expect = 2.1e-106, Sum P(5) = 2.1e-106
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:   916 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 975
             T Y +LVEG++L  V+   GV      SN+   V++ LGIEAAR TI+ EIK  +E + +
Sbjct:  2188 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2247

Query:   976 SIDFRHPMLVADLMTSKGEVLG 997
              ID RH ML+AD+M   G++LG
Sbjct:  2248 DIDIRHIMLLADIMAFTGDILG 2269

 Score = 146 (56.5 bits), Expect = 2.8e-115, Sum P(5) = 2.8e-115
 Identities = 54/169 (31%), Positives = 86/169 (50%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             KY +    P  AVG+++AQSIGEPGTQMTLKTFHFAG V      + VP    I+   + 
Sbjct:  1782 KYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAG-VASMNVTLGVPRIKEIINASNS 1840

Query:  1169 DRIRLLHLEVDI-DSIRYCI------ERT--RGISGHLT---VSGHSFLILKPKDS--SK 1214
              +  +L++ +++ D+  + +      E+T  R I  ++     S   FL +K  +    K
Sbjct:  1841 IQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQK 1900

Query:  1215 SF-NSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDN 1262
              F N   Y +K     +++K    IN+  I++  +  + KYKL +   N
Sbjct:  1901 LFLNINAYNIKD----IILKQSH-INKIKINKIHINVINKYKLHISLKN 1944

 Score = 121 (47.7 bits), Expect = 3.9e-67, Sum P(5) = 3.9e-67
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R
Sbjct:   634 LMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673

 Score = 107 (42.7 bits), Expect = 3.4e-101, Sum P(5) = 3.4e-101
 Identities = 29/54 (53%), Positives = 34/54 (62%)

Query:   284 QTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD 337
             + LN L VL+LF+ I    + LL  N E   P  LI+T LLVPPN IRPSVI D
Sbjct:   216 EDLNSLYVLKLFKNINPYHVKLL--NIE--NPEKLIITALLVPPNTIRPSVIID 265

 Score = 85 (35.0 bits), Expect = 6.5e-109, Sum P(5) = 6.5e-109
 Identities = 28/110 (25%), Positives = 55/110 (50%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISG------HLTV 1199
             ++C YI+E +     F+ +K + + I+ L L ++  +I+  I +   I+       H+ V
Sbjct:  1873 DICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINV 1932

Query:  1200 SGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 1249
                  L +  K+    F  +M  +K+ L  ++I G + I R +I +ED+E
Sbjct:  1933 INKYKLHISLKNDEFIF-FQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1981

 Score = 69 (29.3 bits), Expect = 8.7e-115, Sum P(6) = 8.7e-115
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             GD +  H+   +       PSLH++SIM H+AK++
Sbjct:   559 GDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593

 Score = 68 (29.0 bits), Expect = 3.8e-79, Sum P(4) = 3.8e-79
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query:   671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             F ++F+   D I+ +SE II+G  + +GTG  +LL
Sbjct:  2296 FVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLL 2330

 Score = 49 (22.3 bits), Expect = 3.9e-67, Sum P(5) = 3.9e-67
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query:   144 CVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFR 193
             C  +  Y++ PL +F+ G    +INI Q I     C    +G++  AG R
Sbjct:   878 CNQYLHYLNKPLIMFNSGAKGALINIAQMIA----C----VGQQNVAGQR 919

 Score = 40 (19.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query:   413 IMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMR-IASTLI 471
             IMA    +L  N+  +   R   L++A+ ++  T  +L    ++FF     +  I+ ++I
Sbjct:  2260 IMAFTGDILGINRFGIQKARQSTLMLASFEE--TNEHLFV--SSFFKNVDEINNISESII 2315

 Score = 38 (18.4 bits), Expect = 5.2e-104, Sum P(5) = 5.2e-104
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query:   868 FLILKPKDS--SKSF-NSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEG 924
             FL +K  +    K F N   Y +K     +++K    IN+  I++  +  + KYKL +  
Sbjct:  1888 FLSVKFNEELIQKLFLNINAYNIKD----IILKQSH-INKIKINKIHINVINKYKLHISL 1942

Query:   925 DN 926
              N
Sbjct:  1943 KN 1944


>UNIPROTKB|Q8IE49 [details] [associations]
            symbol:PF13_0150 "DNA-directed RNA polymerase"
            species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
            RNA polymerase III complex" evidence=ISS] [GO:0006383
            "transcription from RNA polymerase III promoter" evidence=ISS]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
            GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
            HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
            ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
            GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
            Uniprot:Q8IE49
        Length = 2356

 Score = 387 (141.3 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 75/135 (55%), Positives = 98/135 (72%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+VLFNRQPSLH++SIM H+AK++  +TFRFNECVC+PYNADFDGDEMN+H+PQTEEA
Sbjct:   568 DGDIVLFNRQPSLHRMSIMCHKAKIMDFKTFRFNECVCSPYNADFDGDEMNLHVPQTEEA 627

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAEAL               LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R
Sbjct:   628 RAEAL--------------YLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673

Query:   461 AQTMRIASTLIADTS 475
               T  +  +  +D S
Sbjct:   674 -DTFCLLCSYFSDAS 687

 Score = 319 (117.4 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 69/165 (41%), Positives = 100/165 (60%)

Query:  1252 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 1311
             T Y +LVEG++L  V+   GV      SN+   V++ LGIEAAR TI+ EIK  +E + +
Sbjct:  2188 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2247

Query:  1312 SIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCI 1371
              ID RH ML+AD+M   G++LGI R G+ K ++S L LASFE T++HLF ++F+   D I
Sbjct:  2248 DIDIRHIMLLADIMAFTGDILGINRFGIQKARQSTLMLASFEETNEHLFVSSFFKNVDEI 2307

Query:  1372 SGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHT 1416
             + +SE II+G  + +GTG  +LL      +      L +  E  T
Sbjct:  2308 NNISESIIVGKNIPIGTGAFQLLYDYKFEKETKNLTLLEKAERET 2352

 Score = 310 (114.2 bits), Expect = 8.7e-115, Sum P(6) = 8.7e-115
 Identities = 73/200 (36%), Positives = 110/200 (55%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDI 477
             A  LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R  T  +  +  +D S  
Sbjct:   631 ALYLMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR-DTFCLLCSYFSDASLY 689

Query:   478 CGIIKRFSWRSWNPV-VFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTAN--- 533
               +          P+   ++   +WTGKQ+ S+++KPN+      N + + R Y+     
Sbjct:   690 IEL----------PIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKFGD 739

Query:   534 -EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMT 592
              +  C  DSYV    SEL+ GS+ K  LGS  K  +FY L+      +A+  M RLS++T
Sbjct:   740 LKHLCLNDSYVCFYKSELICGSLGKKVLGSS-KYGLFYYLIHHNSSHIALKIMNRLSKLT 798

Query:   593 SFYLMNRGFSIGIGDVTPGQ 612
             S Y  N+G +IGI DV P Q
Sbjct:   799 SRYFSNKGMTIGIDDVRPSQ 818

 Score = 298 (110.0 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 86/259 (33%), Positives = 143/259 (55%)

Query:    85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
             G ++KED ++  S ++I+++ +Y ++    P P+G+LD ++G ++  + C TC + L +C
Sbjct:    41 GIMSKEDIIKY-SEVKIMNREMY-KNNSGIPYPYGVLDLKLGAHKSNSVCETCNKKLINC 98

Query:   145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALS-Y 203
              GHFGYI+L  PVFHIGY++ +I+IL  ICK   C+ +LL +EK   F   L+  +    
Sbjct:    99 SGHFGYIELNYPVFHIGYYKYIIHILYCICKY--CSSLLLSKEKI-DFYCNLKKKSTDDS 155

Query:   204 LVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKY---KNRTKKKD---AIV 257
               +K L K+IL   KKV+ C  CG   GV+KK  ++K S +++   K+  K K+    I+
Sbjct:   156 FYKKHLFKRILNNCKKVNKCYICGNPQGVIKK--IIKPSLDQFMKLKHILKVKENGKMII 213

Query:   258 --EDLLAEYNEAVKFNPEIEA-HKKFGLIQTLNPLEVLQLFEAIPLEDI-PLLLMNAELS 313
               EDL + Y   +K    I   H K  L+   NP +++     +P   I P ++++   +
Sbjct:   214 KEEDLNSLY--VLKLFKNINPYHVK--LLNIENPEKLIITALLVPPNTIRPSVIIDEHGT 269

Query:   314 KPSDL--ILTRLLVPPNCI 330
                DL  IL+ +    N I
Sbjct:   270 AEDDLTCILSEITQLNNTI 288

 Score = 260 (96.6 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 48/59 (81%), Positives = 55/59 (93%)

Query:   612 QGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             +GFVQNSF++GL+PTEFFFHTM GREGLVDTAVKTAETGYMQRRL+K+LEDL + YD S
Sbjct:   942 RGFVQNSFYTGLSPTEFFFHTMSGREGLVDTAVKTAETGYMQRRLMKALEDLSIHYDYS 1000

 Score = 202 (76.2 bits), Expect = 3.9e-121, Sum P(5) = 3.9e-121
 Identities = 51/156 (32%), Positives = 90/156 (57%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS +I TPI+   L+ + + ++A ++K +LE+TT+ ++C YI+E +    
Sbjct:  1827 GVPRIKEIINASNSIQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYTSRG 1886

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISG------HLTVSGHSFLILKPKDSS 877
              F+ +K + + I+ L L ++  +I+  I +   I+       H+ V     L +  K+  
Sbjct:  1887 VFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINVINKYKLHISLKNDE 1946

Query:   878 KSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 913
               F  +M  +K+ L  ++I G + I R +I +ED+E
Sbjct:  1947 FIF-FQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1981

 Score = 178 (67.7 bits), Expect = 2.1e-106, Sum P(5) = 2.1e-106
 Identities = 38/82 (46%), Positives = 53/82 (64%)

Query:   916 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGM 975
             T Y +LVEG++L  V+   GV      SN+   V++ LGIEAAR TI+ EIK  +E + +
Sbjct:  2188 TVYSILVEGNSLNYVLGLEGVDFKHIISNHVINVFQVLGIEAARITIINEIKKCVEAYSI 2247

Query:   976 SIDFRHPMLVADLMTSKGEVLG 997
              ID RH ML+AD+M   G++LG
Sbjct:  2248 DIDIRHIMLLADIMAFTGDILG 2269

 Score = 146 (56.5 bits), Expect = 2.8e-115, Sum P(5) = 2.8e-115
 Identities = 54/169 (31%), Positives = 86/169 (50%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             KY +    P  AVG+++AQSIGEPGTQMTLKTFHFAG V      + VP    I+   + 
Sbjct:  1782 KYFKYISTPGDAVGSISAQSIGEPGTQMTLKTFHFAG-VASMNVTLGVPRIKEIINASNS 1840

Query:  1169 DRIRLLHLEVDI-DSIRYCI------ERT--RGISGHLT---VSGHSFLILKPKDS--SK 1214
              +  +L++ +++ D+  + +      E+T  R I  ++     S   FL +K  +    K
Sbjct:  1841 IQTPILNIPLEVNDNYNFALMMKSKLEKTTIRDICMYIKEDYTSRGVFLSVKFNEELIQK 1900

Query:  1215 SF-NSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDN 1262
              F N   Y +K     +++K    IN+  I++  +  + KYKL +   N
Sbjct:  1901 LFLNINAYNIKD----IILKQSH-INKIKINKIHINVINKYKLHISLKN 1944

 Score = 121 (47.7 bits), Expect = 3.9e-67, Sum P(5) = 3.9e-67
 Identities = 21/40 (52%), Positives = 31/40 (77%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             LM  K NL+TP+NGE++IA TQDF++  Y++T K+ F +R
Sbjct:   634 LMNVKHNLITPKNGEVIIALTQDFLSASYIITNKDTFLDR 673

 Score = 107 (42.7 bits), Expect = 3.4e-101, Sum P(5) = 3.4e-101
 Identities = 29/54 (53%), Positives = 34/54 (62%)

Query:   284 QTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD 337
             + LN L VL+LF+ I    + LL  N E   P  LI+T LLVPPN IRPSVI D
Sbjct:   216 EDLNSLYVLKLFKNINPYHVKLL--NIE--NPEKLIITALLVPPNTIRPSVIID 265

 Score = 85 (35.0 bits), Expect = 6.5e-109, Sum P(5) = 6.5e-109
 Identities = 28/110 (25%), Positives = 55/110 (50%)

Query:  1146 EVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISG------HLTV 1199
             ++C YI+E +     F+ +K + + I+ L L ++  +I+  I +   I+       H+ V
Sbjct:  1873 DICMYIKEDYTSRGVFLSVKFNEELIQKLFLNINAYNIKDIILKQSHINKIKINKIHINV 1932

Query:  1200 SGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 1249
                  L +  K+    F  +M  +K+ L  ++I G + I R +I +ED+E
Sbjct:  1933 INKYKLHISLKNDEFIF-FQMESLKKGLLDLLIYGDKDIKRCIIKKEDIE 1981

 Score = 69 (29.3 bits), Expect = 8.7e-115, Sum P(6) = 8.7e-115
 Identities = 13/35 (37%), Positives = 21/35 (60%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             GD +  H+   +       PSLH++SIM H+AK++
Sbjct:   559 GDVVERHICDGDIVLFNRQPSLHRMSIMCHKAKIM 593

 Score = 68 (29.0 bits), Expect = 3.8e-79, Sum P(4) = 3.8e-79
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query:   671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             F ++F+   D I+ +SE II+G  + +GTG  +LL
Sbjct:  2296 FVSSFFKNVDEINNISESIIVGKNIPIGTGAFQLL 2330

 Score = 49 (22.3 bits), Expect = 3.9e-67, Sum P(5) = 3.9e-67
 Identities = 16/50 (32%), Positives = 25/50 (50%)

Query:   144 CVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFR 193
             C  +  Y++ PL +F+ G    +INI Q I     C    +G++  AG R
Sbjct:   878 CNQYLHYLNKPLIMFNSGAKGALINIAQMIA----C----VGQQNVAGQR 919

 Score = 40 (19.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
 Identities = 14/60 (23%), Positives = 29/60 (48%)

Query:   413 IMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMR-IASTLI 471
             IMA    +L  N+  +   R   L++A+ ++  T  +L    ++FF     +  I+ ++I
Sbjct:  2260 IMAFTGDILGINRFGIQKARQSTLMLASFEE--TNEHLFV--SSFFKNVDEINNISESII 2315

 Score = 38 (18.4 bits), Expect = 5.2e-104, Sum P(5) = 5.2e-104
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query:   868 FLILKPKDS--SKSF-NSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEG 924
             FL +K  +    K F N   Y +K     +++K    IN+  I++  +  + KYKL +  
Sbjct:  1888 FLSVKFNEELIQKLFLNINAYNIKD----IILKQSH-INKIKINKIHINVINKYKLHISL 1942

Query:   925 DN 926
              N
Sbjct:  1943 KN 1944


>RGD|1305574 [details] [associations]
            symbol:Polr3a "polymerase (RNA) III (DNA directed) polypeptide
            A" species:10116 "Rattus norvegicus" [GO:0003682 "chromatin
            binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0032728 "positive regulation of interferon-beta production"
            evidence=ISO] [GO:0045087 "innate immune response" evidence=ISO]
            [GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR007081
            InterPro:IPR015700 Pfam:PF04998 RGD:1305574 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0032549 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
            PANTHER:PTHR19376:SF15 IPI:IPI00766228 EMBL:BC086344
            UniGene:Rn.41904 ProteinModelPortal:Q5RK26 STRING:Q5RK26
            UCSC:RGD:1305574 Genevestigator:Q5RK26 Uniprot:Q5RK26
        Length = 491

 Score = 831 (297.6 bits), Expect = 1.6e-103, Sum P(2) = 1.6e-103
 Identities = 167/275 (60%), Positives = 211/275 (76%)

Query:  1145 GEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGH 1202
             GE+ EYIEEVF+PDD FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G 
Sbjct:   212 GEISEYIEEVFLPDDCFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGE 271

Query:  1203 SFLILKPKDSSKSFNSKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGD 1261
             + + + P+++SKS    + Q +K+ LP VV++G+  ++RAVIH ++  G  K+KLLVEGD
Sbjct:   272 AVVCVTPRENSKSSMYYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGD 331

Query:  1262 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLV 1321
             NLR VMAT+GVKG + +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML+
Sbjct:   332 NLRAVMATHGVKGTRTTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLL 391

Query:  1322 ADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMG 1381
             +DLMT KGEVLGITR GLAKMKESVL LASFE T+DHLFDAA++GQ D + GVSECIIMG
Sbjct:   392 SDLMTYKGEVLGITRFGLAKMKESVLMLASFEKTADHLFDAAYFGQKDSVCGVSECIIMG 451

Query:  1382 LPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 1415
             +PMN+GTGL KLL    R  +P  R L+FD  EFH
Sbjct:   452 IPMNIGTGLFKLLHKANRDPKPPRRPLIFDTHEFH 486

 Score = 718 (257.8 bits), Expect = 8.0e-70, P = 8.0e-70
 Identities = 145/237 (61%), Positives = 185/237 (78%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
             GVPRIKEIINAS+ ISTPIITA LD D D DYAR+VKGR+E+T LGE+ EYIEEVF+PDD
Sbjct:   167 GVPRIKEIINASKAISTPIITAQLDMDDDADYARLVKGRIEKTLLGEISEYIEEVFLPDD 226

Query:   824 SFILIKLDMDRIRLLHLEVDIDSIRY--CIERTRGISGHLTVSGHSFLILKPKDSSKSFN 881
              FIL+KL ++RIRLL LEV+ +++RY  C  + R   G + V G + + + P+++SKS  
Sbjct:   227 CFILVKLSLERIRLLRLEVNAETVRYSICTSKLRVKPGDVAVHGEAVVCVTPRENSKSSM 286

Query:   882 SKMYQ-MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
               + Q +K+ LP VV++G+  ++RAVIH ++  G  K+KLLVEGDNLR VMAT+GVKG +
Sbjct:   287 YYVLQFLKEDLPKVVVQGIPEVSRAVIHIDEQSGKEKFKLLVEGDNLRAVMATHGVKGTR 346

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
              +SNNTYEV KTLGIEAAR+TI+ EI+  M NHGMSID RH ML++DLMT KGEVLG
Sbjct:   347 TTSNNTYEVEKTLGIEAARTTIINEIQYTMVNHGMSIDRRHVMLLSDLMTYKGEVLG 403

 Score = 232 (86.7 bits), Expect = 1.6e-103, Sum P(2) = 1.6e-103
 Identities = 62/152 (40%), Positives = 86/152 (56%)

Query:   997 GNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSK-EFLQDTSENFVRDIXX 1055
             G   P+E KR+LD+I A    +S+ +LS  E L L+ E +  K EFL    ++F+++I  
Sbjct:    15 GKDEPLEFKRVLDNIKAVYPCQSERALSKNE-LTLTTEAIMKKNEFLC-CQDSFLQEIKT 72

Query:  1056 XXXXXXXXXXVTSHQDKVSQ--PLREQILSHQDKIGHGRESNPFPSACKAEACREKYVRA 1113
                        T  +  ++       ++L   D+I    +   F      E CR+KY+RA
Sbjct:    73 FIKGVSEKIKKTRDKYGINDNGTTEPRVLYQLDRITR-TQIEKF-----LETCRDKYMRA 126

Query:  1114 QIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             Q+EP +AVGAL AQSIGEPGTQMTLKTFHFAG
Sbjct:   127 QMEPGSAVGALCAQSIGEPGTQMTLKTFHFAG 158

 Score = 194 (73.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS-EPVPRTLLFDNPEFH 726
             D  FDAA++GQ D + GVSECIIMG+PMN+GTGL KLL    R  +P  R L+FD  EFH
Sbjct:   427 DHLFDAAYFGQKDSVCGVSECIIMGIPMNIGTGLFKLLHKANRDPKPPRRPLIFDTHEFH 486

Query:   727 FPQV 730
              P V
Sbjct:   487 IPLV 490

 Score = 38 (18.4 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query:   502 TGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEF 536
             +GK+ F L+++ +    V A    KG   T+N  +
Sbjct:   319 SGKEKFKLLVEGDNLRAVMATHGVKGTRTTSNNTY 353


>DICTYBASE|DDB_G0279193 [details] [associations]
            symbol:rpb1 "RNA polymerase II core subunit"
            species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
            evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006355 "regulation of transcription, DNA-dependent"
            evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
            "macropinocytosis" evidence=RCA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
            GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
            PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
            KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
            Uniprot:P35084
        Length = 1727

 Score = 276 (102.2 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 56/127 (44%), Positives = 81/127 (63%)

Query:   340 SDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             +D DVV+FNRQPSLHK+S+M HR KV+P+ TFR N  V +PYNADFDGDEMN+H+PQT E
Sbjct:   442 NDGDVVIFNRQPSLHKMSMMGHRIKVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTLE 501

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAE +             +++M  +  +V+P++   ++   QD + G  L T+++ F  
Sbjct:   502 TRAEVI-------------EIMMVPRQ-IVSPQSNRPVMGIVQDTLLGSRLFTKRDCFME 547

Query:   460 RAQTMRI 466
             +   M I
Sbjct:   548 KDLVMNI 554

 Score = 263 (97.6 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 58/174 (33%), Positives = 105/174 (60%)

Query:  1226 LLPSVVIKGVQGINRAVIHEED-VEGVTK---------YKLLVEGDNLRDVMATYGVKGV 1275
             +L  +V++G++GI +  +  +D +  VT+         + L  +G +L +VM+   V   
Sbjct:  1284 MLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHT 1343

Query:  1276 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGIT 1335
             + +SN+  E+ + LGIEA R+ ++ E++ V+   G  +++RH  ++AD+MT +G ++ IT
Sbjct:  1344 RTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLMAIT 1403

Query:  1336 RHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
             RHG+ +++   L   SFE T + L DAA + +TD + GV+E II+G    +GTG
Sbjct:  1404 RHGINRVETGPLMRCSFEETVEILMDAAMFSETDDVKGVTENIILGQLPPLGTG 1457

 Score = 237 (88.5 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+  GLTP EFFFH MGGREGL+DTAVKT+ETGY+QRRLVK++ED+ +
Sbjct:   800 DYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDVSI 859

Query:   666 QYD 668
             +YD
Sbjct:   860 KYD 862

 Score = 207 (77.9 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 74/235 (31%), Positives = 114/235 (48%)

Query:   115 PIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSIC 174
             P   GLLD  MGT  K   C TC   +++C GHFG+I+L  PVFHIG+   V+ IL+ +C
Sbjct:    47 PKAGGLLDPAMGTIDKTQRCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVC 106

Query:   175 KNPTCARVLLGEEKAAGFRA--KLRNPA--LSYLVRKSLKKKIL----ETTKKVSVCPHC 226
              +  C++ LL +     FR   K+RN    L+ +V     KK+     E  ++  +    
Sbjct:   107 YH--CSK-LLTDTNEHSFRQALKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTD 163

Query:   227 GEINGVVKK--CG--LLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGL 282
              E++  VK   CG  L KI+ E  K            ++ E+ +    +  IE  KK   
Sbjct:   164 EELDKPVKHGGCGNVLPKITKEDLK------------IIVEFKDVT--DESIE--KK--- 204

Query:   283 IQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD 337
                L+   VL + + I  ED   + +N + ++   +I T L VPP  +RPS++ D
Sbjct:   205 -SVLSAERVLNILKRIKDEDSRAMGINPDWARADWMIATVLPVPPPPVRPSIMMD 258

 Score = 149 (57.5 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 38/124 (30%), Positives = 66/124 (53%)

Query:   488 SWN----PVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYV 543
             SW+    P   ++   +WTGKQ+FSLI+ P+    +N    T         E    D+ V
Sbjct:   560 SWDGKVPPPAILKPKQLWTGKQLFSLII-PD----INLIRFTSTHNDKEPNECSAGDTRV 614

Query:   544 ILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSI 603
             I+   ELLAG + K +LG+    ++ ++++ + G D     + +   + + +L+NRGF++
Sbjct:   615 IIERGELLAGILCKRSLGAAN-GSIIHVVMNEHGHDTCRLFIDQTQTVVNHWLINRGFTM 673

Query:   604 GIGD 607
             GIGD
Sbjct:   674 GIGD 677

 Score = 145 (56.1 bits), Expect = 2.3e-74, Sum P(5) = 2.3e-74
 Identities = 33/117 (28%), Positives = 69/117 (58%)

Query:   890 LLPSVVIKGVQGINRAVIHEED-VEGVTK---------YKLLVEGDNLRDVMATYGVKGV 939
             +L  +V++G++GI +  +  +D +  VT+         + L  +G +L +VM+   V   
Sbjct:  1284 MLSEMVLRGIKGIKKVFMRTDDKIPKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHT 1343

Query:   940 KCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
             + +SN+  E+ + LGIEA R+ ++ E++ V+   G  +++RH  ++AD+MT +G ++
Sbjct:  1344 RTTSNDIVEIIQVLGIEAVRNALLKELRAVISFDGSYVNYRHLAILADVMTYRGHLM 1400

 Score = 141 (54.7 bits), Expect = 2.6e-96, Sum P(6) = 2.6e-96
 Identities = 52/188 (27%), Positives = 91/188 (48%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEIIN ++ + TP +T YL      D+D A+IVK +LE TTL  V    E  + P
Sbjct:  1116 GVPRLKEIINIAKQVKTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDP 1175

Query:   822 DDSFILIKLDMDRIR----LLHLEVDIDSIR---YCIERTRGI--SGHLTVSGHSFLILK 872
             D    +I  D + +     L   E+D+ S+      IE  RG+     LT++  +  +++
Sbjct:  1176 DPQNTIISEDAEFVNSYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVR 1235

Query:   873 PKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMA 932
               D   S N  ++        ++++ ++ +        D +   ++   +E + L + M 
Sbjct:  1236 --DFGLSLNC-IFSDDNA-EKLILR-IRMVESQETKGTDNDDDDQFLRRIESNMLSE-MV 1289

Query:   933 TYGVKGVK 940
               G+KG+K
Sbjct:  1290 LRGIKGIK 1297

 Score = 129 (50.5 bits), Expect = 9.1e-95, Sum P(7) = 9.1e-95
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+++A   P   VGALAAQSIGEP TQMTL TFH+AG
Sbjct:  1071 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAG 1107

 Score = 81 (33.6 bits), Expect = 8.3e-90, Sum P(7) = 8.3e-90
 Identities = 39/164 (23%), Positives = 76/164 (46%)

Query:  1107 REKYVRAQIEPATAVGALAAQSIG-EPGTQMTL--KTFHFAGEVCEYI-EEVFVPDDSFI 1162
             R K V++Q+E  T     +A  I  +P  Q T+  +   F     E   EE+ V   S  
Sbjct:  1149 RAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVNSYFELPDEEIDVHSMSPW 1208

Query:  1163 LIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK-----PKDSSKS 1215
             L+++++DR  +   ++ +  I  C+ R  G+S +   S  +   LIL+      +++  +
Sbjct:  1209 LLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNAEKLILRIRMVESQETKGT 1268

Query:  1216 FNSKMYQM-----KQLLPSVVIKGVQGINRAVIHEED-VEGVTK 1253
              N    Q        +L  +V++G++GI +  +  +D +  VT+
Sbjct:  1269 DNDDDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKIPKVTE 1312

 Score = 71 (30.1 bits), Expect = 3.9e-47, Sum P(4) = 3.9e-47
 Identities = 20/57 (35%), Positives = 31/57 (54%)

Query:   644 VKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +   ETG + R    S E+     ++  DAA + +TD + GV+E II+G    +GTG
Sbjct:  1407 INRVETGPLMRC---SFEETV---EILMDAAMFSETDDVKGVTENIILGQLPPLGTG 1457

 Score = 57 (25.1 bits), Expect = 6.2e-57, Sum P(5) = 6.2e-57
 Identities = 11/48 (22%), Positives = 26/48 (54%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +++M  +  +V+P++   ++   QD + G  L T+++ F  +   M I
Sbjct:   508 EIMMVPRQ-IVSPQSNRPVMGIVQDTLLGSRLFTKRDCFMEKDLVMNI 554

 Score = 49 (22.3 bits), Expect = 1.3e-75, Sum P(6) = 1.3e-75
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query:   893 SVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKG 938
             SV+    Q +N+ +    D  G +    L E +NL+  M T G KG
Sbjct:   718 SVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLK-AMVTAGSKG 762

 Score = 49 (22.3 bits), Expect = 7.4e-45, Sum P(4) = 7.4e-45
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query:  1229 SVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKG 1274
             SV+    Q +N+ +    D  G +    L E +NL+  M T G KG
Sbjct:   718 SVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLK-AMVTAGSKG 762

 Score = 44 (20.5 bits), Expect = 1.4e-55, Sum P(5) = 1.4e-55
 Identities = 31/131 (23%), Positives = 54/131 (41%)

Query:   258 EDLLAEYNEAVKFNPEIEAHKKFGLIQTL--NPLEVLQLFEAIPLE-DIPLLLMNAELS- 313
             +DL  +  + VK N E++  +K G    +     + LQ   A  ++ +IP L    + S 
Sbjct:   265 DDLTHKLADIVKANRELQRQEKNGAPAHIIAEATQFLQFHVATYVDNEIPGLPQAQQRSG 324

Query:   314 KPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRF 373
             +P   I  RL      IR +++      +   +    P+L    +   R+  L      +
Sbjct:   325 RPLKSIRQRLKGKEGRIRGNLMGKRVDFSARTVITADPNLSIDQVGVPRSIAL---NLTY 381

Query:   374 NECVCTPYNAD 384
              E V TP+N D
Sbjct:   382 PETV-TPFNID 391

 Score = 43 (20.2 bits), Expect = 9.1e-95, Sum P(7) = 9.1e-95
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query:   889 QLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 929
             Q L ++ I+ V  +N AV+  E  + V + K++   D   D
Sbjct:   978 QKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTED 1018

 Score = 43 (20.2 bits), Expect = 1.0e-63, Sum P(5) = 1.0e-63
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query:  1225 QLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 1265
             Q L ++ I+ V  +N AV+  E  + V + K++   D   D
Sbjct:   978 QKLFNIDIRRVSDLNPAVVVLEIEKLVARLKIIATADTTED 1018


>CGD|CAL0000919 [details] [associations]
            symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
            evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
            [GO:0006366 "transcription from RNA polymerase II promoter"
            evidence=IEA] [GO:0009267 "cellular response to starvation"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
            polymerase activity" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
            GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
            GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
            GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 271 (100.5 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 68/195 (34%), Positives = 104/195 (53%)

Query:  1226 LLPSVVIKGVQGINRAVI--HE---EDVEGVTK----YKLLVEGDNLRDVMATYGVKGVK 1276
             +L S+ ++G+ GI R  +  H+    D  G  K    + L  +G NL DVMA  GV   +
Sbjct:  1269 MLESISLRGIPGITRVFMMQHKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTR 1328

Query:  1277 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITR 1336
               SN+  EV   LGIEA RS++  EI  V+   G  +++RH  L+ D+MTS+G ++ ITR
Sbjct:  1329 TYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITR 1388

Query:  1337 HGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA 1396
             HG+ +     L   SFE T + L DAA   + D   G+SE +++G    +GTG   L+  
Sbjct:  1389 HGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFDLMVD 1448

Query:  1397 VPRSEPVPRTLLFDN 1411
                 +  P ++  D+
Sbjct:  1449 DRMLQKAPSSMAMDD 1463

 Score = 250 (93.1 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 55/126 (43%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D+D VLFNRQPSLHK+S+MAHR +V+P+ TFR N  V +PYNADFDGDEMN+H+PQ+ E 
Sbjct:   438 DDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 497

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             R+E       LS        + A    +V+P++ + ++   QD + G   +T ++ F   
Sbjct:   498 RSE-------LS-------QICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEY 543

Query:   461 AQTMRI 466
              Q M +
Sbjct:   544 DQVMNM 549

 Score = 240 (89.5 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  +GFV+NS+  GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK+LED+ V
Sbjct:   791 DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMV 850

Query:   666 QYD 668
              YD
Sbjct:   851 HYD 853

 Score = 180 (68.4 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 39/107 (36%), Positives = 62/107 (57%)

Query:   113 RTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQS 172
             + P   GL D R+G+  +   C TCG+++++C GHFG+I+L  PVFHIG+   +    +S
Sbjct:    47 KRPREGGLNDPRLGSIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACES 106

Query:   173 ICKNPTCARVLLGEEKAAGFRA-KLRNPALSYLVRKSL--KKKILET 216
             +C +  C ++LL E   A  +A K+R+P   +    SL   K + ET
Sbjct:   107 VCMH--CGKLLLDETNPAMAQAIKIRDPKKRFNAVWSLCKTKMVCET 151

 Score = 165 (63.1 bits), Expect = 7.6e-84, Sum P(7) = 7.6e-84
 Identities = 43/116 (37%), Positives = 65/116 (56%)

Query:   890 LLPSVVIKGVQGINRAVI--HE---EDVEGVTK----YKLLVEGDNLRDVMATYGVKGVK 940
             +L S+ ++G+ GI R  +  H+    D  G  K    + L  +G NL DVMA  GV   +
Sbjct:  1269 MLESISLRGIPGITRVFMMQHKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTR 1328

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               SN+  EV   LGIEA RS++  EI  V+   G  +++RH  L+ D+MTS+G ++
Sbjct:  1329 TYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLM 1384

 Score = 145 (56.1 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEI+N ++NI TP +T +LD +  +D++ A+IV+  +E TTL  V    E  + P
Sbjct:  1098 GVPRLKEILNVAKNIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDP 1157

Query:   822 DDSFILIKLDMDRI 835
             D    +I+ D D +
Sbjct:  1158 DPRTTVIEDDYDTV 1171

 Score = 134 (52.2 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query:   491 PVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSEL 550
             P   V+   +WTGKQ+ SL +      P   +L+   R     +    +D+ +++ + E+
Sbjct:   562 PPAVVKPKQLWTGKQLLSLAI------PKGIHLQ---RFDGGRDLLSPKDTGMLIVDGEI 612

Query:   551 LAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + G +DK T+G+ G   + + ++R+ G  V       + ++ +++L++ GFSIGIGD
Sbjct:   613 MFGVVDKKTVGATG-GGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGD 668

 Score = 116 (45.9 bits), Expect = 5.1e-92, Sum P(8) = 5.1e-92
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ ++ + P   VG +AAQSIGEP TQMTL TFH+AG
Sbjct:  1053 QFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAG 1089

 Score = 86 (35.3 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query:   286 LNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSV 334
             L P E+L +F+ I  ED   +  N + ++P  +++T L VPP  +RPS+
Sbjct:   202 LTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSI 250

 Score = 69 (29.3 bits), Expect = 2.7e-76, Sum P(8) = 2.7e-76
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             G ++  HL   +       PSLHK+S+MAHR +V+
Sbjct:   429 GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVM 463

 Score = 66 (28.3 bits), Expect = 2.1e-43, Sum P(5) = 2.1e-43
 Identities = 25/104 (24%), Positives = 46/104 (44%)

Query:   644 VKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIK 703
             +  ++TG + R    S E+     ++  DAA   + D   G+SE +++G    +GTG   
Sbjct:  1391 INRSDTGALMRC---SFEETV---EILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFD 1444

Query:   704 LLQAVPRSEPVPRTLLFDNPEFH---FPQVYYERRRDYSVKVTA 744
             L+      +  P ++  D+        P   YE  RD ++ + A
Sbjct:  1445 LMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARDENIDIDA 1488

 Score = 45 (20.9 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 21/99 (21%), Positives = 49/99 (49%)

Query:   827 LIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK------PKDSSK 878
             L++L++DR ++L  ++ +  +   I +  G    +  S  +   LI++      PK   +
Sbjct:  1193 LLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDE 1252

Query:   879 SFNSKMYQ-MKQL----LPSVVIKGVQGINRAVIHEEDV 912
               +++  Q +K++    L S+ ++G+ GI R  + +  V
Sbjct:  1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKV 1291

 Score = 45 (20.9 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 21/99 (21%), Positives = 49/99 (49%)

Query:  1163 LIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK------PKDSSK 1214
             L++L++DR ++L  ++ +  +   I +  G    +  S  +   LI++      PK   +
Sbjct:  1193 LLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDE 1252

Query:  1215 SFNSKMYQ-MKQL----LPSVVIKGVQGINRAVIHEEDV 1248
               +++  Q +K++    L S+ ++G+ GI R  + +  V
Sbjct:  1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKV 1291

 Score = 45 (20.9 bits), Expect = 1.3e-55, Sum P(6) = 1.3e-55
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query:    15 TRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             TR+    + A    +V+P++ + ++   QD + G   +T ++ F    Q M +
Sbjct:   497 TRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNM 549

 Score = 41 (19.5 bits), Expect = 1.0e-80, Sum P(8) = 1.0e-80
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query:   221 SVCPHCGEI 229
             SVC HCG++
Sbjct:   106 SVCMHCGKL 114


>UNIPROTKB|Q5ACI7 [details] [associations]
            symbol:RPO21 "DNA-directed RNA polymerase" species:237561
            "Candida albicans SC5314" [GO:0009267 "cellular response to
            starvation" evidence=IMP] [GO:0030447 "filamentous growth"
            evidence=IMP] [GO:0036170 "filamentous growth of a population of
            unicellular organisms in response to starvation" evidence=IMP]
            [GO:0036180 "filamentous growth of a population of unicellular
            organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
            "cellular response to biotic stimulus" evidence=IMP]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
            GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
            STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
        Length = 1728

 Score = 271 (100.5 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 68/195 (34%), Positives = 104/195 (53%)

Query:  1226 LLPSVVIKGVQGINRAVI--HE---EDVEGVTK----YKLLVEGDNLRDVMATYGVKGVK 1276
             +L S+ ++G+ GI R  +  H+    D  G  K    + L  +G NL DVMA  GV   +
Sbjct:  1269 MLESISLRGIPGITRVFMMQHKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTR 1328

Query:  1277 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITR 1336
               SN+  EV   LGIEA RS++  EI  V+   G  +++RH  L+ D+MTS+G ++ ITR
Sbjct:  1329 TYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLMAITR 1388

Query:  1337 HGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQA 1396
             HG+ +     L   SFE T + L DAA   + D   G+SE +++G    +GTG   L+  
Sbjct:  1389 HGINRSDTGALMRCSFEETVEILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFDLMVD 1448

Query:  1397 VPRSEPVPRTLLFDN 1411
                 +  P ++  D+
Sbjct:  1449 DRMLQKAPSSMAMDD 1463

 Score = 250 (93.1 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 55/126 (43%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D+D VLFNRQPSLHK+S+MAHR +V+P+ TFR N  V +PYNADFDGDEMN+H+PQ+ E 
Sbjct:   438 DDDPVLFNRQPSLHKMSMMAHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSPET 497

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             R+E       LS        + A    +V+P++ + ++   QD + G   +T ++ F   
Sbjct:   498 RSE-------LS-------QICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEY 543

Query:   461 AQTMRI 466
              Q M +
Sbjct:   544 DQVMNM 549

 Score = 240 (89.5 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  +GFV+NS+  GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK+LED+ V
Sbjct:   791 DYSPESKGFVENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDIMV 850

Query:   666 QYD 668
              YD
Sbjct:   851 HYD 853

 Score = 180 (68.4 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 39/107 (36%), Positives = 62/107 (57%)

Query:   113 RTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQS 172
             + P   GL D R+G+  +   C TCG+++++C GHFG+I+L  PVFHIG+   +    +S
Sbjct:    47 KRPREGGLNDPRLGSIDRNFRCQTCGEDMAECPGHFGHIELAKPVFHIGFIAKIKKACES 106

Query:   173 ICKNPTCARVLLGEEKAAGFRA-KLRNPALSYLVRKSL--KKKILET 216
             +C +  C ++LL E   A  +A K+R+P   +    SL   K + ET
Sbjct:   107 VCMH--CGKLLLDETNPAMAQAIKIRDPKKRFNAVWSLCKTKMVCET 151

 Score = 165 (63.1 bits), Expect = 7.6e-84, Sum P(7) = 7.6e-84
 Identities = 43/116 (37%), Positives = 65/116 (56%)

Query:   890 LLPSVVIKGVQGINRAVI--HE---EDVEGVTK----YKLLVEGDNLRDVMATYGVKGVK 940
             +L S+ ++G+ GI R  +  H+    D  G  K    + L  +G NL DVMA  GV   +
Sbjct:  1269 MLESISLRGIPGITRVFMMQHKVSHPDETGEFKQGKEWVLETDGVNLADVMAVPGVDSTR 1328

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               SN+  EV   LGIEA RS++  EI  V+   G  +++RH  L+ D+MTS+G ++
Sbjct:  1329 TYSNDFIEVLSVLGIEATRSSLYKEILNVIAFDGSYVNYRHMALLVDVMTSRGHLM 1384

 Score = 145 (56.1 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 30/74 (40%), Positives = 47/74 (63%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEI+N ++NI TP +T +LD +  +D++ A+IV+  +E TTL  V    E  + P
Sbjct:  1098 GVPRLKEILNVAKNIKTPAMTVFLDPEVASDIEKAKIVQSAIEHTTLKNVTSSTEIYYDP 1157

Query:   822 DDSFILIKLDMDRI 835
             D    +I+ D D +
Sbjct:  1158 DPRTTVIEDDYDTV 1171

 Score = 134 (52.2 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 32/117 (27%), Positives = 63/117 (53%)

Query:   491 PVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSEL 550
             P   V+   +WTGKQ+ SL +      P   +L+   R     +    +D+ +++ + E+
Sbjct:   562 PPAVVKPKQLWTGKQLLSLAI------PKGIHLQ---RFDGGRDLLSPKDTGMLIVDGEI 612

Query:   551 LAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + G +DK T+G+ G   + + ++R+ G  V       + ++ +++L++ GFSIGIGD
Sbjct:   613 MFGVVDKKTVGATG-GGLIHTVMREKGPKVCAELFSSIQKVVNYWLLHNGFSIGIGD 668

 Score = 116 (45.9 bits), Expect = 5.1e-92, Sum P(8) = 5.1e-92
 Identities = 21/37 (56%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ ++ + P   VG +AAQSIGEP TQMTL TFH+AG
Sbjct:  1053 QFQKSIVHPGEMVGVVAAQSIGEPATQMTLNTFHYAG 1089

 Score = 86 (35.3 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query:   286 LNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSV 334
             L P E+L +F+ I  ED   +  N + ++P  +++T L VPP  +RPS+
Sbjct:   202 LTPSEILNVFKHISPEDCYKMGFNEDYARPEWMLITVLPVPPPPVRPSI 250

 Score = 69 (29.3 bits), Expect = 2.7e-76, Sum P(8) = 2.7e-76
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             G ++  HL   +       PSLHK+S+MAHR +V+
Sbjct:   429 GWKVERHLMDDDPVLFNRQPSLHKMSMMAHRVRVM 463

 Score = 66 (28.3 bits), Expect = 2.1e-43, Sum P(5) = 2.1e-43
 Identities = 25/104 (24%), Positives = 46/104 (44%)

Query:   644 VKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIK 703
             +  ++TG + R    S E+     ++  DAA   + D   G+SE +++G    +GTG   
Sbjct:  1391 INRSDTGALMRC---SFEETV---EILLDAAAAAELDDCKGISENVMLGQMAPLGTGSFD 1444

Query:   704 LLQAVPRSEPVPRTLLFDNPEFH---FPQVYYERRRDYSVKVTA 744
             L+      +  P ++  D+        P   YE  RD ++ + A
Sbjct:  1445 LMVDDRMLQKAPSSMAMDDIADGGGATPYKDYENARDENIDIDA 1488

 Score = 45 (20.9 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 21/99 (21%), Positives = 49/99 (49%)

Query:   827 LIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK------PKDSSK 878
             L++L++DR ++L  ++ +  +   I +  G    +  S  +   LI++      PK   +
Sbjct:  1193 LLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDE 1252

Query:   879 SFNSKMYQ-MKQL----LPSVVIKGVQGINRAVIHEEDV 912
               +++  Q +K++    L S+ ++G+ GI R  + +  V
Sbjct:  1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKV 1291

 Score = 45 (20.9 bits), Expect = 5.2e-95, Sum P(8) = 5.2e-95
 Identities = 21/99 (21%), Positives = 49/99 (49%)

Query:  1163 LIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSF--LILK------PKDSSK 1214
             L++L++DR ++L  ++ +  +   I +  G    +  S  +   LI++      PK   +
Sbjct:  1193 LLRLELDRAKMLDKQLTMAQVAEKISQNFGEDLFVIWSDDTADKLIIRCRVVRDPKSLDE 1252

Query:  1215 SFNSKMYQ-MKQL----LPSVVIKGVQGINRAVIHEEDV 1248
               +++  Q +K++    L S+ ++G+ GI R  + +  V
Sbjct:  1253 DADAEEDQILKRIEAHMLESISLRGIPGITRVFMMQHKV 1291

 Score = 45 (20.9 bits), Expect = 1.3e-55, Sum P(6) = 1.3e-55
 Identities = 12/53 (22%), Positives = 26/53 (49%)

Query:    15 TRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             TR+    + A    +V+P++ + ++   QD + G   +T ++ F    Q M +
Sbjct:   497 TRSELSQICAVPLQIVSPQSNKPVMGIVQDTLCGIRKMTLRDIFIEYDQVMNM 549

 Score = 41 (19.5 bits), Expect = 1.0e-80, Sum P(8) = 1.0e-80
 Identities = 6/9 (66%), Positives = 8/9 (88%)

Query:   221 SVCPHCGEI 229
             SVC HCG++
Sbjct:   106 SVCMHCGKL 114


>POMBASE|SPBC28F2.12 [details] [associations]
            symbol:rpb1 "RNA polymerase II large subunit Rpb1"
            species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IC] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IC] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
            GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
            RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
            MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
            GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
            EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
        Length = 1752

 Score = 269 (99.8 bits), Expect = 1.7e-85, Sum P(5) = 1.7e-85
 Identities = 63/173 (36%), Positives = 98/173 (56%)

Query:  1226 LLPSVVIKGVQGINRAVIHE-------ED--VEGVTKYKLLVEGDNLRDVMATYGVKGVK 1276
             +L S+ ++GV  I R  + E       ED   E   ++ L  +G NL + M   GV   +
Sbjct:  1273 MLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATR 1332

Query:  1277 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITR 1336
               SN+  E+ + LGIEA RS ++ E++ V+E  G  +++RH  L+ D+MTS+G ++ ITR
Sbjct:  1333 TYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLMAITR 1392

Query:  1337 HGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
             HG+ + +   L   SFE T + L DAA  G+ D   G+SE I++G    +GTG
Sbjct:  1393 HGINRAETGALMRCSFEETVEILMDAAASGEKDDCKGISENIMLGQLAPMGTG 1445

 Score = 260 (96.6 bits), Expect = 1.7e-85, Sum P(5) = 1.7e-85
 Identities = 55/126 (43%), Positives = 78/126 (61%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DVV+FNRQPSLHK+S+M HR +V+P+ TFR N  V +PYNADFDGDEMN+H+PQ+EE 
Sbjct:   444 DGDVVIFNRQPSLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEET 503

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE               ++ M  K  +V+P++ + ++   QD + G    + ++ F  R
Sbjct:   504 RAEI-------------QEITMVPKQ-IVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTR 549

Query:   461 AQTMRI 466
                M I
Sbjct:   550 NAVMNI 555

 Score = 235 (87.8 bits), Expect = 1.7e-85, Sum P(5) = 1.7e-85
 Identities = 42/62 (67%), Positives = 52/62 (83%)

Query:   607 DVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             D    +GF++NS+  GLTP EFFFH M GREGL+DTAVKTAETGY+QRRLVK++ED+ V+
Sbjct:   798 DSPESRGFIENSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDVMVR 857

Query:   667 YD 668
             YD
Sbjct:   858 YD 859

 Score = 233 (87.1 bits), Expect = 1.7e-85, Sum P(5) = 1.7e-85
 Identities = 80/281 (28%), Positives = 129/281 (45%)

Query:    85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
             G ++ E+ ++  S  +I       +  QR P   GLLD R+GT  ++  C TCG+ ++DC
Sbjct:    22 GILSPEE-IRSMSVAKIEFPETMDESGQR-PRVGGLLDPRLGTIDRQFKCQTCGETMADC 79

Query:   145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYL 204
              GHFG+I+L  PVFHIG+   +  IL+ +C N  C     G+ K      K  N    Y 
Sbjct:    80 PGHFGHIELAKPVFHIGFLSKIKKILECVCWN--C-----GKLKIDSSNPKF-NDTQRYR 131

Query:   205 VRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAE 263
               K+    +    K   VC   G ++       L   S    +      +  I +D L  
Sbjct:   132 DPKNRLNAVWNVCKTKMVCD-TG-LSAGSDNFDLSNPSANMGHGGCGAAQPTIRKDGLRL 189

Query:   264 YNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRL 323
             +    +   E +  +K    + L+PLEV  +F  I  ED+  L +N + ++P  +I+T L
Sbjct:   190 WGSWKRGKDESDLPEK----RLLSPLEVHTIFTHISSEDLAHLGLNEQYARPDWMIITVL 245

Query:   324 LVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAK 364
              VPP  +RPS+  D  S  +  L ++   + K +    R +
Sbjct:   246 PVPPPSVRPSISVDGTSRGEDDLTHKLSDIIKANANVRRCE 286

 Score = 162 (62.1 bits), Expect = 2.4e-74, Sum P(5) = 2.4e-74
 Identities = 39/116 (33%), Positives = 65/116 (56%)

Query:   890 LLPSVVIKGVQGINRAVIHE-------ED--VEGVTKYKLLVEGDNLRDVMATYGVKGVK 940
             +L S+ ++GV  I R  + E       ED   E   ++ L  +G NL + M   GV   +
Sbjct:  1273 MLESISLRGVPNITRVYMMEHKIVRQIEDGTFERADEWVLETDGINLTEAMTVEGVDATR 1332

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               SN+  E+ + LGIEA RS ++ E++ V+E  G  +++RH  L+ D+MTS+G ++
Sbjct:  1333 TYSNSFVEILQILGIEATRSALLKELRNVIEFDGSYVNYRHLALLCDVMTSRGHLM 1388

 Score = 160 (61.4 bits), Expect = 4.1e-75, Sum P(5) = 4.1e-75
 Identities = 50/190 (26%), Positives = 95/190 (50%)

Query:   419 KVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDIC 478
             ++ M  K  +V+P++ + ++   QD + G    + ++ F  R   M I   +     D  
Sbjct:   509 EITMVPKQ-IVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNIMLWV----PDWD 563

Query:   479 GIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANL-KTKGRAYTANEEFC 537
             GI+         P V ++  V+WTGKQI SLI+      P   NL +   +   +N    
Sbjct:   564 GILP--------PPVILKPKVLWTGKQILSLII------PKGINLIRDDDKQSLSNPT-- 607

Query:   538 HRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLM 597
               DS +++ N E++ G +DK T+G+  +  + + + ++ G ++       + R+ +++L+
Sbjct:   608 --DSGMLIENGEIIYGVVDKKTVGAS-QGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLL 664

Query:   598 NRGFSIGIGD 607
             + GFSIGIGD
Sbjct:   665 HNGFSIGIGD 674

 Score = 125 (49.1 bits), Expect = 1.7e-85, Sum P(5) = 1.7e-85
 Identities = 29/72 (40%), Positives = 43/72 (59%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDK--DTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEI+N ++NI TP +T YL      ++D A+ V+ ++E TTL  V    E  + P
Sbjct:  1100 GVPRLKEILNVAKNIKTPSLTIYLMPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDP 1159

Query:   822 DDSFILIKLDMD 833
             D    +I+ D D
Sbjct:  1160 DPQDTVIEEDKD 1171

 Score = 123 (48.4 bits), Expect = 2.7e-85, Sum P(5) = 2.7e-85
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ +A + P   VG LAAQSIGEP TQMTL TFH+AG
Sbjct:  1055 RFQQAVVSPGEMVGTLAAQSIGEPATQMTLNTFHYAG 1091

 Score = 65 (27.9 bits), Expect = 3.0e-37, Sum P(3) = 3.0e-37
 Identities = 20/57 (35%), Positives = 30/57 (52%)

Query:   644 VKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +  AETG + R    S E+     ++  DAA  G+ D   G+SE I++G    +GTG
Sbjct:  1395 INRAETGALMRC---SFEETV---EILMDAAASGEKDDCKGISENIMLGQLAPMGTG 1445

 Score = 48 (22.0 bits), Expect = 1.7e-77, Sum P(5) = 1.7e-77
 Identities = 22/82 (26%), Positives = 38/82 (46%)

Query:  1109 KYVRAQIEPATAVGALAAQSIG-EPGTQMTL----KTF--HFAGEVCEYIEEVFVPDDSF 1161
             K V+ QIE  T     +A  I  +P  Q T+    K F   F     E +EE       +
Sbjct:  1135 KNVQTQIEHTTLSTVTSATEIHYDPDPQDTVIEEDKDFVEAFFAIPDEEVEENLYKQSPW 1194

Query:  1162 ILIKLDMDRIRLLHLEVDIDSI 1183
             +L +L++DR ++L  ++ +  +
Sbjct:  1195 LL-RLELDRAKMLDKKLSMSDV 1215

 Score = 45 (20.9 bits), Expect = 4.5e-44, Sum P(4) = 4.5e-44
 Identities = 11/48 (22%), Positives = 24/48 (50%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             ++ M  K  +V+P++ + ++   QD + G    + ++ F  R   M I
Sbjct:   509 EITMVPKQ-IVSPQSNKPVMGIVQDTLAGVRKFSLRDNFLTRNAVMNI 555

 Score = 40 (19.1 bits), Expect = 1.1e-76, Sum P(5) = 1.1e-76
 Identities = 19/93 (20%), Positives = 42/93 (45%)

Query:   765 VPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVF-VPDD 823
             +P I   ++ ++N+ T I    L   T            + T + E  +++E  F +PD+
Sbjct:  1124 MPWIAANMDLAKNVQTQIEHTTLSTVTSATEIHYDPDPQD-TVIEEDKDFVEAFFAIPDE 1182

Query:   824 ---------SFILIKLDMDRIRLLHLEVDIDSI 847
                      S  L++L++DR ++L  ++ +  +
Sbjct:  1183 EVEENLYKQSPWLLRLELDRAKMLDKKLSMSDV 1215


>ASPGD|ASPL0000054301 [details] [associations]
            symbol:AN0809 species:162425 "Emericella nidulans"
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
            evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
            GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
        Length = 1745

 Score = 285 (105.4 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
 Identities = 61/127 (48%), Positives = 84/127 (66%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D DV+LFNRQPSLHK S+M HR +V+P+ TFR N  V +PYNADFDGDEMN+H+PQ+EE+
Sbjct:   452 DGDVILFNRQPSLHKESMMGHRVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEES 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTP-RNGELLIAATQDFITGGYLLTQKNAFFN 459
             RAE    L +L+++            N+V+P RNG L+    QD + G Y + +++ F  
Sbjct:   512 RAE----LQQLALVPQ----------NIVSPQRNGPLM-GIVQDTLCGIYKICRRDVFLT 556

Query:   460 RAQTMRI 466
             + Q M I
Sbjct:   557 KEQVMNI 563

 Score = 246 (91.7 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
 Identities = 62/195 (31%), Positives = 104/195 (53%)

Query:  1211 DSSKSFNSKMYQMKQ-LLPSVVIKGVQGINRAVIHEE-----DVEGVT----------KY 1254
             D    ++  + +++Q LL ++ ++GV G+ RA I+E+       +G            ++
Sbjct:  1271 DDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIRVQEDGALTDEQSDPLCREW 1330

Query:  1255 KLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSID 1314
              L   G +L +V+A  GV   +  SN   EV++  GIEAAR+ ++ E  +V+   G  ++
Sbjct:  1331 ILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVN 1390

Query:  1315 FRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGV 1374
              RH  L+ D+MT +G +  +TRHG+ +     L   SFE T + L +AA +G+ D   GV
Sbjct:  1391 HRHLALLVDVMTMRGYLTPVTRHGINRADNGALMRCSFEETVEILLEAAAFGELDDCRGV 1450

Query:  1375 SECIIMGLPMNVGTG 1389
             SE +I+G     GTG
Sbjct:  1451 SENLILGQMAPAGTG 1465

 Score = 239 (89.2 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
 Identities = 44/63 (69%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  +GFV+NS+  GLTPTEFFFH M GREGL+DTAVKTAETGY+QR+LVK+LE++ V
Sbjct:   811 DYSPESRGFVENSYLRGLTPTEFFFHAMAGREGLIDTAVKTAETGYIQRKLVKALEEVMV 870

Query:   666 QYD 668
             +YD
Sbjct:   871 KYD 873

 Score = 220 (82.5 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
 Identities = 67/229 (29%), Positives = 109/229 (47%)

Query:   110 DPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINI 169
             D ++ P   GL D R+GT  ++ NC TC +   +C GHFG+I+L  PVFHIG+   +  +
Sbjct:    45 DQRQRPRTKGLNDPRLGTIDRQWNCETCEEGQKECPGHFGHIELATPVFHIGFLTKIKKL 104

Query:   170 LQSICKNPTCARVLLGEEKAAGFRA-KLRNPALSYLVRKSLKKKILETTKKVSVCPHCGE 228
             L+++C N  C ++           A ++R+P   +     L K IL    +    P   E
Sbjct:   105 LETVCHN--CGKIKANTSDPKFLDALRIRDPKRRFDHIWRLSKDILIC--EADPPPEDDE 160

Query:   229 INGVVKKCGLLKISHEKYKNR--TKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTL 286
                   K   L   H    N   T +K+ I   L+  +  +     E++  +    I T 
Sbjct:   161 YGKESSKPVRL---HGGCGNAQPTVRKEGIT--LVGTWKPSKSMMDEMDMQQPEKKIIT- 214

Query:   287 NPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVI 335
              P   L +F  I  ED+ ++ ++ + ++P  +ILT L VPP  +RPSV+
Sbjct:   215 -PQMALNIFRNISHEDVRIMGLSNDYARPEWMILTVLPVPPPPVRPSVV 262

 Score = 191 (72.3 bits), Expect = 3.2e-76, Sum P(6) = 3.2e-76
 Identities = 53/193 (27%), Positives = 94/193 (48%)

Query:   427 NLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSW 486
             N+V+P+    L+   QD + G Y + +++ F  + Q M I   +     D  G+I     
Sbjct:   524 NIVSPQRNGPLMGIVQDTLCGIYKICRRDVFLTKEQVMNIMMWV----PDWDGVIPP--- 576

Query:   487 RSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK---TKGRAYTANEEFCHRDSYV 543
                 P +F +    WTGKQ+ S++       P   NL    +KG A ++ +    +D  V
Sbjct:   577 ----PAIF-KPRPRWTGKQMISMVF------PSGLNLMRTDSKGAAPSSEKYSPLQDGNV 625

Query:   544 ILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSI 603
             ++   +L+ G ++K  +G+ G   V +I+  ++G D AV        + +++L++ GFSI
Sbjct:   626 LIHEGQLMYGMLNKKIVGASG-GGVIHIIFNEYGADAAVAFFNGAQAIVNYWLLHNGFSI 684

Query:   604 GIGDVTPGQGFVQ 616
             GIGD  P    +Q
Sbjct:   685 GIGDTIPNDQTIQ 697

 Score = 143 (55.4 bits), Expect = 2.9e-66, Sum P(4) = 2.9e-66
 Identities = 39/135 (28%), Positives = 71/135 (52%)

Query:   875 DSSKSFNSKMYQMKQ-LLPSVVIKGVQGINRAVIHEE-----DVEGVT----------KY 918
             D    ++  + +++Q LL ++ ++GV G+ RA I+E+       +G            ++
Sbjct:  1271 DDDIEYDVTLKKLEQHLLDTLNLRGVPGVERAFINEKKKIRVQEDGALTDEQSDPLCREW 1330

Query:   919 KLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSID 978
              L   G +L +V+A  GV   +  SN   EV++  GIEAAR+ ++ E  +V+   G  ++
Sbjct:  1331 ILETSGSSLAEVLAIPGVDATRTYSNQFIEVFEVFGIEAARAAVLREFTVVLSFDGSYVN 1390

Query:   979 FRHPMLVADLMTSKG 993
              RH  L+ D+MT +G
Sbjct:  1391 HRHLALLVDVMTMRG 1405

 Score = 128 (50.1 bits), Expect = 3.6e-85, Sum P(5) = 3.6e-85
 Identities = 25/41 (60%), Positives = 28/41 (68%)

Query:  1105 ACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             A   ++ +A   P   VG LAAQSIGEP TQMTL TFHFAG
Sbjct:  1068 AIESRFAKAAAAPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1108

 Score = 127 (49.8 bits), Expect = 4.5e-85, Sum P(5) = 4.5e-85
 Identities = 53/192 (27%), Positives = 93/192 (48%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEI+N + NI TP +T Y + +   D + A+ ++  +E T L  + E  E  + P
Sbjct:  1117 GVPRLKEILNVATNIKTPSMTVYQEPERAHDKEGAKQLRSAVEYTNLRSITEATEIYYDP 1176

Query:   822 DDSFILIKLDMDRIR---LLHLEVDIDS-------IRYCIERTRGISGHLTVSGHSFLIL 871
             D    +I+ D D +    ++  +V+ DS       +R  + R + +   LTV   +  I 
Sbjct:  1177 DIQTTVIENDRDMVESYFIIPEDVNDDSSRQSKWLLRIILSRAKLLDKGLTVQDVATKIK 1236

Query:   872 K--PKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE-GVTKYKLLVEGDNLR 928
             +  P+D +  F+      +Q++    I+ +Q        ++D+E  VT  KL     +L 
Sbjct:  1237 QAYPRDIAVIFSDNNAD-EQVIR---IRQIQDYKEDE-DDDDIEYDVTLKKL---EQHLL 1288

Query:   929 DVMATYGVKGVK 940
             D +   GV GV+
Sbjct:  1289 DTLNLRGVPGVE 1300

 Score = 67 (28.6 bits), Expect = 1.3e-44, Sum P(4) = 1.3e-44
 Identities = 17/49 (34%), Positives = 26/49 (53%)

Query:    20 QVLMANKSNLVTP-RNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             Q L     N+V+P RNG L+    QD + G Y + +++ F  + Q M I
Sbjct:   516 QQLALVPQNIVSPQRNGPLM-GIVQDTLCGIYKICRRDVFLTKEQVMNI 563

 Score = 60 (26.2 bits), Expect = 1.3e-57, Sum P(4) = 1.3e-57
 Identities = 13/33 (39%), Positives = 20/33 (60%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             ++  +AA +G+ D   GVSE +I+G     GTG
Sbjct:  1433 EILLEAAAFGELDDCRGVSENLILGQMAPAGTG 1465

 Score = 57 (25.1 bits), Expect = 3.2e-76, Sum P(6) = 3.2e-76
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             G ++  HL   +       PSLHK S+M HR +V+
Sbjct:   443 GWKVERHLMDGDVILFNRQPSLHKESMMGHRVRVM 477

 Score = 40 (19.1 bits), Expect = 9.9e-64, Sum P(5) = 9.9e-64
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query:  1212 SSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHE----EDVEGVTKYKLLVEGDNLRDV 1266
             SSK+    + ++K++L   V   ++  +  V  E     D EG  + +  VE  NLR +
Sbjct:  1110 SSKNVTLGVPRLKEILN--VATNIKTPSMTVYQEPERAHDKEGAKQLRSAVEYTNLRSI 1166


>SGD|S000002299 [details] [associations]
            symbol:RPO21 "RNA polymerase II largest subunit B220"
            species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
            evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
            "DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
            RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
            GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
            GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
            eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
            PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
            PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
            PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
            PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
            PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
            PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
            PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
            PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
            PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
            PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
            PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
            PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
            PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
            PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
            PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
            PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
            PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
            PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
            PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
            PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
            PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
            PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
            PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
            PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
            PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
            PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
            PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
            PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
            PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
            PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
            PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
            EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
            PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
            IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
            PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
            KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
            EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
            Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
        Length = 1733

 Score = 267 (99.0 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 60/126 (47%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             DND VLFNRQPSLHK+S+MAHR KV+P+ TFR N  V +PYNADFDGDEMN+H+PQ+EE 
Sbjct:   438 DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 497

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE       LS        L A    +V+P++ +  +   QD + G   LT ++ F   
Sbjct:   498 RAE-------LS-------QLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIEL 543

Query:   461 AQTMRI 466
              Q + +
Sbjct:   544 DQVLNM 549

 Score = 246 (91.7 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 46/63 (73%), Positives = 54/63 (85%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  +GFV+NS+  GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK+LED+ V
Sbjct:   791 DYSPESKGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMV 850

Query:   666 QYD 668
              YD
Sbjct:   851 HYD 853

 Score = 240 (89.5 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 55/178 (30%), Positives = 97/178 (54%)

Query:  1226 LLPSVVIKGVQGINRAVIHEED--VEGVT-------KYKLLVEGDNLRDVMATYGVKGVK 1276
             +L ++ ++GV+ I R V+ + D  V   T       ++ L  +G NL +VM   G+   +
Sbjct:  1267 MLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTR 1326

Query:  1277 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITR 1336
               +N+  ++ + LGIEA R+ +  E+  V+ + G  +++RH  L+ D+MT++G +  +TR
Sbjct:  1327 IYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTR 1386

Query:  1337 HGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             HG  +     L   SFE T + LF+A    + D   GVSE +I+G    +GTG   ++
Sbjct:  1387 HGFNRSNTGALMRCSFEETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM 1444

 Score = 157 (60.3 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 26/68 (38%), Positives = 43/68 (63%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL D R+G+  +   C TC + +++C GHFG+IDL  PVFH+G+   +  + + +C +  
Sbjct:    52 GLNDPRLGSIDRNLKCQTCQEGMNECPGHFGHIDLAKPVFHVGFIAKIKKVCECVCMH-- 109

Query:   179 CARVLLGE 186
             C ++LL E
Sbjct:   110 CGKLLLDE 117

 Score = 141 (54.7 bits), Expect = 2.2e-74, Sum P(6) = 2.2e-74
 Identities = 33/113 (29%), Positives = 64/113 (56%)

Query:   890 LLPSVVIKGVQGINRAVIHEED--VEGVT-------KYKLLVEGDNLRDVMATYGVKGVK 940
             +L ++ ++GV+ I R V+ + D  V   T       ++ L  +G NL +VM   G+   +
Sbjct:  1267 MLENITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTR 1326

Query:   941 CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
               +N+  ++ + LGIEA R+ +  E+  V+ + G  +++RH  L+ D+MT++G
Sbjct:  1327 IYTNSFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQG 1379

 Score = 129 (50.5 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 24/37 (64%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             +++R+ + P   VG LAAQSIGEP TQMTL TFHFAG
Sbjct:  1052 QFLRSVVHPGEMVGVLAAQSIGEPATQMTLNTFHFAG 1088

 Score = 127 (49.8 bits), Expect = 1.2e-84, Sum P(6) = 1.2e-84
 Identities = 28/76 (36%), Positives = 45/76 (59%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKD--TDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEI+N ++N+ TP +T YL+     D + A++++  +E TTL  V    E  + P
Sbjct:  1097 GVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDP 1156

Query:   822 DDSFILIKLDMDRIRL 837
             D    +I  D + I+L
Sbjct:  1157 DPRSTVIPEDEEIIQL 1172

 Score = 124 (48.7 bits), Expect = 7.7e-85, Sum P(6) = 7.7e-85
 Identities = 34/148 (22%), Positives = 73/148 (49%)

Query:   466 IASTLIADTS-DICGIIKRFSW-RSWNPVV----FVRTAVIWTGKQIFSLILKPNRDCPV 519
             I    + DT  ++  ++    W   W+ V+     ++   +W+GKQI S+ + PN     
Sbjct:   531 IRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAI-PN----- 584

Query:   520 NANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
               +L+      T       +D+ +++ + +++ G ++K T+GS     + +++ R+ G  
Sbjct:   585 GIHLQRFDEGTTL---LSPKDNGMLIIDGQIIFGVVEKKTVGSSN-GGLIHVVTREKGPQ 640

Query:   580 VAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             V       + ++ +F+L++ GFS GIGD
Sbjct:   641 VCAKLFGNIQKVVNFWLLHNGFSTGIGD 668

 Score = 93 (37.8 bits), Expect = 2.6e-69, Sum P(7) = 2.6e-69
 Identities = 30/109 (27%), Positives = 51/109 (46%)

Query:   283 IQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSV-ISDLKSD 341
             ++ L+  E+L +F+ I ++D   L  N   S+P  +ILT L VPP  +RPS+  ++ +  
Sbjct:   199 LRVLSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRG 258

Query:   342 NDVVLFNRQPSLH-KLSIMAHRAKVLPHRTFRFNECVCTPYNADF-DGD 388
              D + F     L   +S+        PH      E +   + A + D D
Sbjct:   259 EDDLTFKLADILKANISLETLEHNGAPHHAIEEAESLLQFHVATYMDND 307

 Score = 71 (30.1 bits), Expect = 2.6e-69, Sum P(7) = 2.6e-69
 Identities = 14/35 (40%), Positives = 21/35 (60%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             G ++  H+   +       PSLHK+S+MAHR KV+
Sbjct:   429 GWKVERHIMDNDPVLFNRQPSLHKMSMMAHRVKVI 463

 Score = 62 (26.9 bits), Expect = 1.8e-37, Sum P(4) = 1.8e-37
 Identities = 20/74 (27%), Positives = 33/74 (44%)

Query:   632 TMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIM 691
             T GG   +       + TG + R    S E+     ++ F+A    + D   GVSE +I+
Sbjct:  1377 TQGGLTSVTRHGFNRSNTGALMRC---SFEETV---EILFEAGASAELDDCRGVSENVIL 1430

Query:   692 GLPMNVGTGLIKLL 705
             G    +GTG   ++
Sbjct:  1431 GQMAPIGTGAFDVM 1444

 Score = 42 (19.8 bits), Expect = 3.0e-42, Sum P(4) = 3.0e-42
 Identities = 11/46 (23%), Positives = 22/46 (47%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             L A    +V+P++ +  +   QD + G   LT ++ F    Q + +
Sbjct:   504 LCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNM 549

 Score = 39 (18.8 bits), Expect = 1.2e-72, Sum P(6) = 1.2e-72
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query:   218 KKVS--VCPHCGEI 229
             KKV   VC HCG++
Sbjct:   100 KKVCECVCMHCGKL 113

 Score = 37 (18.1 bits), Expect = 1.4e-12, Sum P(3) = 1.4e-12
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query:    99 IQIVSKNLYCQDPQRTPIP 117
             + I S+  Y  DP+ T IP
Sbjct:  1146 VTIASEIYYDPDPRSTVIP 1164


>UNIPROTKB|G4MT89 [details] [associations]
            symbol:MGG_04652 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
            GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
            EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
            Uniprot:G4MT89
        Length = 1757

 Score = 261 (96.9 bits), Expect = 4.6e-83, Sum P(5) = 4.6e-83
 Identities = 55/124 (44%), Positives = 74/124 (59%)

Query:   343 DVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARA 402
             D ++FNRQPSLHK S+M H+ +V+P+ TFR N  V +PYNADFDGDEMN+H+PQTEE RA
Sbjct:   454 DYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMNLHVPQTEETRA 513

Query:   403 EALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQ 462
             E               K L     N+V+P+    L+   QD + G Y L +++ F  +  
Sbjct:   514 EV--------------KELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEA 559

Query:   463 TMRI 466
              M I
Sbjct:   560 VMDI 563

 Score = 247 (92.0 bits), Expect = 4.6e-83, Sum P(5) = 4.6e-83
 Identities = 56/186 (30%), Positives = 101/186 (54%)

Query:  1224 KQLLPSVVIKGVQGINRAVIHEE---------------DVEGVTKYKLLVEGDNLRDVMA 1268
             + +L  + ++G++GI RA ++++               D     ++ L  +G +LR V+ 
Sbjct:  1281 EHMLDGLTLRGIKGIERAFLNKDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLC 1340

Query:  1269 TYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSK 1328
               GV  V+  +N+ Y++   LGIEAAR+ ++ E+  V+   G  ++ RH  L+ D+MT +
Sbjct:  1341 VDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYR 1400

Query:  1329 GEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGT 1388
             G +  +TRHG+ +     L   SFE T + L +AA  G+ D   G+SE +++G    +GT
Sbjct:  1401 GSIAAVTRHGINRADTGALMRCSFEETVEILLEAAAIGELDDCRGISENVMLGQLAPMGT 1460

Query:  1389 GLIKLL 1394
             G  ++L
Sbjct:  1461 GAFEVL 1466

 Score = 247 (92.0 bits), Expect = 4.6e-83, Sum P(5) = 4.6e-83
 Identities = 81/217 (37%), Positives = 115/217 (52%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  +GFV+NS+  GLTP+EFFFH M GREGL+DTAVKTAETGY+QRRLVK+LED+  
Sbjct:   802 DFSPEARGFVENSYLRGLTPSEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKALEDVAA 861

Query:   666 QYDMSFDAAF-------YGQTDCISGVS-ECIIMG-LPMNVGT--GLIKL-LQAVPRSEP 713
             +YD +   +        YG+ D + G++ E   M  L ++ G   G+ KL L    R   
Sbjct:   862 KYDGTVRNSLGDIIQFIYGE-DGLDGMAIEKQKMDHLNISNGKFDGMYKLDLMTATRPRE 920

Query:   714 VPRTLLFDNPEFHFPQVYYERRRDYSVKVTASVKVTLELWNPGDYKLSQDGVPRIKEIIN 773
             +   L + N  F  P V      +Y      ++K   +L    +YK   D   ++   +N
Sbjct:   921 L-NALEYGNEIFGDPAVQQLLDEEYD-----AIKADRQLIREINYKKKDDNDMQLP--LN 972

Query:   774 ASRNISTPIITAYLD--KDTDL---DYARIVKGRLER 805
              +R I        +D  + +DL   D   +VKG LER
Sbjct:   973 VARVIENAKKLFKIDDAQRSDLKPQDVIPVVKGFLER 1009

 Score = 223 (83.6 bits), Expect = 4.6e-83, Sum P(5) = 4.6e-83
 Identities = 73/249 (29%), Positives = 125/249 (50%)

Query:   110 DPQRT-PIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVIN 168
             D  RT P   GL D  +GT  ++  C TC  ++++C GHFG+I+L  PV+H G+      
Sbjct:    44 DETRTKPREGGLNDPLLGTTDRQYKCKTCNNDMNNCPGHFGHIELAKPVYHPGFINKTKK 103

Query:   169 ILQSICKNPTCARVLLGEEKAAGFRA--KLRNPALSY-LVRKSLK-KKI--LETTKKVSV 222
             IL+ +C    C+++L  E     F    +LR+P   + +V K+ K KK+  +ET  K   
Sbjct:   104 ILEMVCHQ--CSKLLCDENNDEQFAQALRLRDPKARFAMVWKACKGKKVCEIETGGK--- 158

Query:   223 CPHCGEINGVVKKCGLLKISHEKYKNRTK--KKDAIVEDLLAEYNEAVKFNPEIEAHKKF 280
                  E + +    G+ K+ H    +     +K A+   L A+  EA +     E  KK 
Sbjct:   159 ----DEKDSIDTATGIEKVPHGGCGSTHPDIRKKAL--QLYAKVEEARE-----EGMKKE 207

Query:   281 GLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD--- 337
                + + P +   + + IP +D+  + +N + ++P  LI+T L VPP  +RPS+  D   
Sbjct:   208 VKDKLITPEQAHHILKHIPEDDLWKMGLNKDYARPEWLIVTVLPVPPPPVRPSISVDGTS 267

Query:   338 --LKSDNDV 344
               ++S++D+
Sbjct:   268 QGMRSEDDL 276

 Score = 144 (55.7 bits), Expect = 6.7e-65, Sum P(4) = 6.7e-65
 Identities = 34/123 (27%), Positives = 66/123 (53%)

Query:   888 KQLLPSVVIKGVQGINRAVIHEE---------------DVEGVTKYKLLVEGDNLRDVMA 932
             + +L  + ++G++GI RA ++++               D     ++ L  +G +LR V+ 
Sbjct:  1281 EHMLDGLTLRGIKGIERAFLNKDTRLVVKPDGSLLNSKDAPECEEWYLDTQGTSLRQVLC 1340

Query:   933 TYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSK 992
               GV  V+  +N+ Y++   LGIEAAR+ ++ E+  V+   G  ++ RH  L+ D+MT +
Sbjct:  1341 VDGVDSVRTLTNDLYQIVDLLGIEAARTALLGELTQVLAFDGSYVNHRHLALLVDVMTYR 1400

Query:   993 GEV 995
             G +
Sbjct:  1401 GSI 1403

 Score = 121 (47.7 bits), Expect = 4.6e-83, Sum P(5) = 4.6e-83
 Identities = 23/37 (62%), Positives = 27/37 (72%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ R+ + P   VG LAAQSIGEP TQMTL TFHF G
Sbjct:  1065 RWQRSFVSPGEMVGVLAAQSIGEPATQMTLNTFHFTG 1101

 Score = 109 (43.4 bits), Expect = 3.7e-67, Sum P(5) = 3.7e-67
 Identities = 59/253 (23%), Positives = 105/253 (41%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMAN--KSNL-VT-PRNG-----ELL 437
             G ++  HL   +       PSLHK S+M H+ +V+  +  + NL VT P N      E+ 
Sbjct:   443 GQKVERHLLTGDYIIFNRQPSLHKESMMGHQVRVMPYSTFRLNLSVTSPYNADFDGDEMN 502

Query:   438 IAATQDFITGGYL----LTQKNAFFNRAQT--MRIASTLIADTSDIC---------GIIK 482
             +   Q   T   +    +   N    +  +  M I    +A T  +C          ++ 
Sbjct:   503 LHVPQTEETRAEVKELCMVPLNIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMD 562

Query:   483 RFSW-RSWNPVV----FVRTAVIWTGKQIFSLILKPNRDCPVNANLKTKGRAYTANEEFC 537
                W   W+ ++     +R    WTGKQI S+++      P        G     N    
Sbjct:   563 IMLWVPDWDGIIPQPAILRPRPRWTGKQIISMVI------PDFVTTHQGGDWNPLN---- 612

Query:   538 HRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLM 597
               D  +++++ EL+ G + K  +G+     + +I   + G   A+  +    R+ +++L+
Sbjct:   613 --DDALLIQSGELMFGLLTKKNVGAAS-GGIIHICYNEQGPARAMAFLNGCQRVVNYWLL 669

Query:   598 NRGFSIGIGDVTP 610
             + G SIGIGD  P
Sbjct:   670 HNGHSIGIGDTIP 682

 Score = 89 (36.4 bits), Expect = 3.5e-59, Sum P(4) = 3.5e-59
 Identities = 25/76 (32%), Positives = 36/76 (47%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDY----ARIVKGRLERTTLGEVCEYIEEVF 819
             GVPR+KEI+N S  I TP +   LD     D+    A+ ++  +E T L  V    E  +
Sbjct:  1110 GVPRLKEILNVSAEIKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVTAMTEIYY 1169

Query:   820 VPDDSFILIKLDMDRI 835
              P+     I  D D +
Sbjct:  1170 DPEIQTTTIDEDADML 1185

 Score = 62 (26.9 bits), Expect = 2.7e-44, Sum P(4) = 2.7e-44
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query:    28 NLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             N+V+P+    L+   QD + G Y L +++ F  +   M I
Sbjct:   524 NIVSPQRNSPLMGIVQDTLAGTYKLCRRDVFLTKEAVMDI 563

 Score = 62 (26.9 bits), Expect = 5.3e-36, Sum P(3) = 5.3e-36
 Identities = 18/62 (29%), Positives = 33/62 (53%)

Query:   644 VKTAETGYMQRRLVKSLEDLCVQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIK 703
             +  A+TG + R    S E+     ++  +AA  G+ D   G+SE +++G    +GTG  +
Sbjct:  1411 INRADTGALMRC---SFEETV---EILLEAAAIGELDDCRGISENVMLGQLAPMGTGAFE 1464

Query:   704 LL 705
             +L
Sbjct:  1465 VL 1466

 Score = 42 (19.8 bits), Expect = 9.8e-62, Sum P(5) = 9.8e-62
 Identities = 18/84 (21%), Positives = 34/84 (40%)

Query:   974 GMSIDFRHPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILAL-S 1032
             GM+I       V+  + +  E  G  T   LK + + +    S     S++  ++ AL  
Sbjct:   718 GMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINISQMTALVG 777

Query:  1033 NETLDSKE----FLQDTSENFVRD 1052
              + ++ K     F   T  +F +D
Sbjct:   778 QQIVEGKRIPFGFKYRTLPHFTKD 801

 Score = 38 (18.4 bits), Expect = 2.5e-39, Sum P(4) = 2.5e-39
 Identities = 18/64 (28%), Positives = 26/64 (40%)

Query:   967 KLVMENHGMSIDFRHPMLVADLMTSKGEV-LGNGTPVELKRLLDDIIAKNSSRSDPSLSA 1025
             K ++   G  ID RH       + ++G   L  G  VE   L  D I  N     PSL  
Sbjct:   417 KYIVRTDGTRIDLRH-------VKNRGSTQLEYGQKVERHLLTGDYIIFNRQ---PSLHK 466

Query:  1026 QEIL 1029
             + ++
Sbjct:   467 ESMM 470

 Score = 37 (18.1 bits), Expect = 2.4e-74, Sum P(5) = 2.4e-74
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query:   876 SSKSFNSKMYQMKQLLP-SVVIK--G-VQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVM 931
             SSK+    + ++K++L  S  IK  G V  ++  +  +   E     + LVE  NLR V 
Sbjct:  1103 SSKNVTLGVPRLKEILNVSAEIKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVT 1162

Query:   932 A 932
             A
Sbjct:  1163 A 1163

 Score = 37 (18.1 bits), Expect = 3.2e-61, Sum P(5) = 3.2e-61
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query:  1212 SSKSFNSKMYQMKQLLP-SVVIK--G-VQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVM 1267
             SSK+    + ++K++L  S  IK  G V  ++  +  +   E     + LVE  NLR V 
Sbjct:  1103 SSKNVTLGVPRLKEILNVSAEIKTPGMVVRLDPKMYPDFKQENAKTLRSLVEHTNLRSVT 1162

Query:  1268 A 1268
             A
Sbjct:  1163 A 1163


>FB|FBgn0003277 [details] [associations]
            symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
            "Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
            II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
            chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
            "mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
            "polytene chromosome" evidence=IDA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
            GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
            GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
            EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
            RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
            SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
            STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
            KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
            InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
            GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
            Uniprot:P04052
        Length = 1887

 Score = 280 (103.6 bits), Expect = 5.8e-83, Sum P(5) = 5.8e-83
 Identities = 62/172 (36%), Positives = 101/172 (58%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             R VI E  + + + ++ L  +G ++  V++   V  ++ SSN+  E+++ LGIEA R ++
Sbjct:  1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V++ +G+ +++RH  L+ D+MT+KG ++ ITRHG+ +     L   SFE T D 
Sbjct:  1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLMAITRHGINRQDTGALMRCSFEETVDV 1430

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE---PVPRTL 1407
             L DAA + +TD + GVSE IIMG    +GTG   LL    +      +P TL
Sbjct:  1431 LMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTL 1482

 Score = 259 (96.2 bits), Expect = 5.8e-83, Sum P(5) = 5.8e-83
 Identities = 53/126 (42%), Positives = 78/126 (61%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D+D+V+FNRQP+LHK+S+M HR KVLP  TFR N    +PYNADFDGDEMN+H+PQ+ E 
Sbjct:   444 DDDLVIFNRQPTLHKMSMMGHRVKVLPWSTFRMNLSCTSPYNADFDGDEMNLHVPQSMET 503

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE + ++H                  ++TP+  + ++   QD +T    +T+++ F  R
Sbjct:   504 RAE-VENIH-------------ITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITR 549

Query:   461 AQTMRI 466
              Q M +
Sbjct:   550 EQVMNL 555

 Score = 234 (87.4 bits), Expect = 5.8e-83, Sum P(5) = 5.8e-83
 Identities = 42/63 (66%), Positives = 54/63 (85%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTP+EF+FH MGGREGL+DTAVKTAETGY+QRRL+K++E + V
Sbjct:   806 DYGPESRGFVENSYLAGLTPSEFYFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 865

Query:   666 QYD 668
              YD
Sbjct:   866 NYD 868

 Score = 195 (73.7 bits), Expect = 5.8e-83, Sum P(5) = 5.8e-83
 Identities = 66/222 (29%), Positives = 106/222 (47%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G   + + C TC  N+++C GHFG+IDL  PVFHIG+    I IL+ +C    
Sbjct:    52 GLMDPRQGVIDRTSRCQTCAGNMTECPGHFGHIDLAKPVFHIGFITKTIKILRCVCFY-- 109

Query:   179 CARVLLGEE--KAAGFRAKLRN-PA--LSYLVRKSLKKKILETTKKVSVCPHCGEINGVV 233
             C+++L+     K      K R  P   L+Y+      K I E  + + +     +     
Sbjct:   110 CSKMLVSPHNPKIKEIVMKSRGQPRKRLAYVYDLCKGKTICEGGEDMDLTKE-NQQPDPN 168

Query:   234 KKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQ 293
             KK G     H  Y+   ++      DL AE+    K   E    KK      ++   V +
Sbjct:   169 KKPGHGGCGH--YQPSIRRTGL---DLTAEW----KHQNEDSQEKKI----VVSAERVWE 215

Query:   294 LFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVI 335
             + + I  E+  +L M+ + ++P  +I+T L VPP  +RP+V+
Sbjct:   216 ILKHITDEECFILGMDPKYARPDWMIVTVLPVPPLAVRPAVV 257

 Score = 154 (59.3 bits), Expect = 6.9e-74, Sum P(6) = 6.9e-74
 Identities = 55/208 (26%), Positives = 99/208 (47%)

Query:   407 SLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
             +LH    M  RA+V  +      ++TP+  + ++   QD +T    +T+++ F  R Q M
Sbjct:   494 NLHVPQSMETRAEVENIHITPRQIITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVM 553

Query:   465 RIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK 524
              +   L   T D          +   P + ++   +WTGKQIFSLI+  N    VN  ++
Sbjct:   554 NLLMFL--PTWDA---------KMPQPCI-LKPRPLWTGKQIFSLIIPGN----VNM-IR 596

Query:   525 TKGRAYTANEEFCHR-----DSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
             T        +E  ++     D+ V++ + EL+ G + K +LG+    ++ +I   + G D
Sbjct:   597 THSTHPDEEDEGPYKWISPGDTKVMVEHGELIMGILCKKSLGTSA-GSLLHICFLELGHD 655

Query:   580 VAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             +A      +  + + +L+  G SIGIGD
Sbjct:   656 IAGRFYGNIQTVINNWLLFEGHSIGIGD 683

 Score = 150 (57.9 bits), Expect = 4.0e-67, Sum P(5) = 4.0e-67
 Identities = 29/94 (30%), Positives = 60/94 (63%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             R VI E  + + + ++ L  +G ++  V++   V  ++ SSN+  E+++ LGIEA R ++
Sbjct:  1311 RIVITETGEFKAIGEWLLETDGTSMMKVLSERDVDPIRTSSNDICEIFQVLGIEAVRKSV 1370

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V++ +G+ +++RH  L+ D+MT+KG ++
Sbjct:  1371 EKEMNAVLQFYGLYVNYRHLALLCDVMTAKGHLM 1404

 Score = 131 (51.2 bits), Expect = 5.8e-83, Sum P(5) = 5.8e-83
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ +AQ  P   VGALAAQS+GEP TQMTL TFHFAG
Sbjct:  1067 RFQQAQANPGEMVGALAAQSLGEPATQMTLNTFHFAG 1103

 Score = 110 (43.8 bits), Expect = 8.8e-81, Sum P(5) = 8.8e-81
 Identities = 30/87 (34%), Positives = 43/87 (49%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEIIN S+    P +T +L      D + A+ V  RLE TTL +V       + P
Sbjct:  1112 GVPRLKEIINISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDP 1171

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             D    +I  D + + + +   D D  R
Sbjct:  1172 DPQRTVISEDQEFVNVYYEMPDFDPTR 1198

 Score = 82 (33.9 bits), Expect = 7.9e-54, Sum P(4) = 7.9e-54
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE---PVPRTL 718
             D+  DAA + +TD + GVSE IIMG    +GTG   LL    +      +P TL
Sbjct:  1429 DVLMDAAAHAETDPMRGVSENIIMGQLPKMGTGCFDLLLDAEKCRFGIEIPNTL 1482

 Score = 65 (27.9 bits), Expect = 6.9e-74, Sum P(6) = 6.9e-74
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query:   387 GDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVL 421
             G ++  HL   +       P+LHK+S+M HR KVL
Sbjct:   435 GYKVERHLRDDDLVIFNRQPTLHKMSMMGHRVKVL 469

 Score = 57 (25.1 bits), Expect = 7.5e-47, Sum P(4) = 7.5e-47
 Identities = 10/39 (25%), Positives = 22/39 (56%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             ++TP+  + ++   QD +T    +T+++ F  R Q M +
Sbjct:   517 IITPQANKPVMGIVQDTLTAVRKMTKRDVFITREQVMNL 555

 Score = 49 (22.3 bits), Expect = 1.1e-63, Sum P(5) = 1.1e-63
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query:   870 ILKPKDSSKSFNSKMYQMK-QLLPSVVIKGV--QGINRAVIHEEDVEGVTKYKLLVEGDN 926
             I K KD   +   K + M+ +  P   ++      +NR +    D  G +  K L E +N
Sbjct:   698 IKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNN 757

Query:   927 LRDVMATYGVKGVKCSSNNTYEVYKTLG 954
             L+  M   G KG   S+ N  +V   +G
Sbjct:   758 LK-AMVVSGSKG---SNINISQVIACVG 781

 Score = 49 (22.3 bits), Expect = 2.0e-31, Sum P(3) = 2.0e-31
 Identities = 40/142 (28%), Positives = 63/142 (44%)

Query:  1224 KQLLPSVVIKG-VQGINRAVIH-EEDVEGVTKYKLLVEGDNLRDVMATYG--VKGVKC-- 1277
             KQ+  S++I G V  I     H +E+ EG   YK +  GD    VM  +G  + G+ C  
Sbjct:   581 KQIF-SLIIPGNVNMIRTHSTHPDEEDEG--PYKWISPGDT--KVMVEHGELIMGILCKK 635

Query:  1278 ----SSNNTYEV-YKTLGIE-AAR--STIMTEIK--LVMENHGMSIDFRHPMLVADLMTS 1327
                 S+ +   + +  LG + A R    I T I   L+ E H + I       +AD  T 
Sbjct:   636 SLGTSAGSLLHICFLELGHDIAGRFYGNIQTVINNWLLFEGHSIGIGDT----IADPQTY 691

Query:  1328 KGEVLGITRHGLAKMKESVLNL 1349
               E+    +  + K K+ V+N+
Sbjct:   692 N-EI----QQAIKKAKDDVINV 708

 Score = 49 (22.3 bits), Expect = 4.2e-31, Sum P(4) = 4.2e-31
 Identities = 24/88 (27%), Positives = 38/88 (43%)

Query:  1206 ILKPKDSSKSFNSKMYQMK-QLLPSVVIKGV--QGINRAVIHEEDVEGVTKYKLLVEGDN 1262
             I K KD   +   K + M+ +  P   ++      +NR +    D  G +  K L E +N
Sbjct:   698 IKKAKDDVINVIQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNN 757

Query:  1263 LRDVMATYGVKGVKCSSNNTYEVYKTLG 1290
             L+  M   G KG   S+ N  +V   +G
Sbjct:   758 LK-AMVVSGSKG---SNINISQVIACVG 781

 Score = 47 (21.6 bits), Expect = 1.7e-63, Sum P(5) = 1.7e-63
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query:   888 KQLLPSVVIKG-VQGINRAVIH-EEDVEGVTKYKLLVEGDNLRDVMATYG--VKGVKCSS 943
             KQ+  S++I G V  I     H +E+ EG   YK +  GD    VM  +G  + G+ C  
Sbjct:   581 KQIF-SLIIPGNVNMIRTHSTHPDEEDEG--PYKWISPGDT--KVMVEHGELIMGILCKK 635

Query:   944 N 944
             +
Sbjct:   636 S 636


>UNIPROTKB|J9NW09 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
            Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
        Length = 1789

 Score = 266 (98.7 bits), Expect = 7.4e-81, Sum P(5) = 7.4e-81
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 7.4e-81, Sum P(5) = 7.4e-81
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 239 (89.2 bits), Expect = 7.4e-81, Sum P(5) = 7.4e-81
 Identities = 54/156 (34%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 206 (77.6 bits), Expect = 7.4e-81, Sum P(5) = 7.4e-81
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 154 (59.3 bits), Expect = 4.4e-69, Sum P(5) = 4.4e-69
 Identities = 53/220 (24%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G DV       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 7.4e-81, Sum P(5) = 7.4e-81
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 122 (48.0 bits), Expect = 5.5e-67, Sum P(5) = 5.5e-67
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1412

 Score = 106 (42.4 bits), Expect = 3.4e-79, Sum P(5) = 3.4e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 6.1e-56, Sum P(4) = 6.1e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1437 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 56 (24.8 bits), Expect = 1.1e-42, Sum P(4) = 1.1e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 8.9e-61, Sum P(5) = 8.9e-61
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 2.5e-59, Sum P(5) = 2.5e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>UNIPROTKB|F1PGS0 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
            EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
        Length = 1969

 Score = 266 (98.7 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 239 (89.2 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/156 (34%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 206 (77.6 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 154 (59.3 bits), Expect = 7.9e-69, Sum P(5) = 7.9e-69
 Identities = 53/220 (24%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G DV       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 122 (48.0 bits), Expect = 9.8e-67, Sum P(5) = 9.8e-67
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1412

 Score = 106 (42.4 bits), Expect = 6.1e-79, Sum P(5) = 6.1e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 9.8e-56, Sum P(4) = 9.8e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1437 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 56 (24.8 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 1.6e-60, Sum P(5) = 1.6e-60
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 4.4e-59, Sum P(5) = 4.4e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>RGD|1587326 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
            species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
            evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
            "cellular_component" evidence=ND] [GO:0005634 "nucleus"
            evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
            phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
            evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
            IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
            UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
            KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
            Uniprot:D4A5A6
        Length = 1970

 Score = 266 (98.7 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 239 (89.2 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/156 (34%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 206 (77.6 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 154 (59.3 bits), Expect = 7.9e-69, Sum P(5) = 7.9e-69
 Identities = 53/220 (24%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G DV       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDVTRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 122 (48.0 bits), Expect = 9.8e-67, Sum P(5) = 9.8e-67
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1412

 Score = 106 (42.4 bits), Expect = 6.1e-79, Sum P(5) = 6.1e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 9.8e-56, Sum P(4) = 9.8e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1437 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 56 (24.8 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 1.6e-60, Sum P(5) = 1.6e-60
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 4.4e-59, Sum P(5) = 4.4e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>UNIPROTKB|P24928 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
            species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
            evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=NAS] [GO:0006366
            "transcription from RNA polymerase II promoter"
            evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
            [GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
            via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
            evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
            "transcription-coupled nucleotide-excision repair" evidence=TAS]
            [GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
            "transcription initiation from RNA polymerase II promoter"
            evidence=TAS] [GO:0006368 "transcription elongation from RNA
            polymerase II promoter" evidence=TAS] [GO:0006370
            "7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
            splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
            [GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
            "positive regulation of viral transcription" evidence=TAS]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
            [GO:0006468 "protein phosphorylation" evidence=IDA]
            Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
            EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
            GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
            Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
            Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
            PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
            EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
            IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
            UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
            SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
            STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
            PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
            UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
            HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
            HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
            HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
            BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
            EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
            ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
            Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
        Length = 1970

 Score = 266 (98.7 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 239 (89.2 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/156 (34%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 206 (77.6 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 153 (58.9 bits), Expect = 1.0e-68, Sum P(5) = 1.0e-68
 Identities = 52/220 (23%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G D+       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 122 (48.0 bits), Expect = 9.8e-67, Sum P(5) = 9.8e-67
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1412

 Score = 106 (42.4 bits), Expect = 6.1e-79, Sum P(5) = 6.1e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 9.8e-56, Sum P(4) = 9.8e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1437 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 56 (24.8 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 1.6e-60, Sum P(5) = 1.6e-60
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 4.4e-59, Sum P(5) = 4.4e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>MGI|MGI:98086 [details] [associations]
            symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
            A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
            polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
            evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
            evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
            [GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
            GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
            HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
            HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
            EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
            UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
            SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
            PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
            Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
            KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
            Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
            GermOnline:ENSMUSG00000005198 Uniprot:P08775
        Length = 1970

 Score = 266 (98.7 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 239 (89.2 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 54/156 (34%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDV 1438

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1439 LMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 206 (77.6 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 153 (58.9 bits), Expect = 1.0e-68, Sum P(5) = 1.0e-68
 Identities = 52/220 (23%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G D+       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 1.3e-80, Sum P(5) = 1.3e-80
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 122 (48.0 bits), Expect = 9.8e-67, Sum P(5) = 9.8e-67
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1319 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1378

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1379 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1412

 Score = 106 (42.4 bits), Expect = 6.1e-79, Sum P(5) = 6.1e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 9.8e-56, Sum P(4) = 9.8e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1437 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1474

 Score = 56 (24.8 bits), Expect = 1.7e-42, Sum P(4) = 1.7e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 1.6e-60, Sum P(5) = 1.6e-60
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 4.4e-59, Sum P(5) = 4.4e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>UNIPROTKB|G3MZY8 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0004672 "protein kinase activity"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
            "transcription from RNA polymerase II promoter" evidence=IEA]
            InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
            SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
            GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
            EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
            EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
        Length = 1970

 Score = 266 (98.7 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 237 (88.5 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
 Identities = 52/141 (36%), Positives = 82/141 (58%)

Query:  1254 YKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSI 1313
             ++L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +  E+  V+   G  +
Sbjct:  1335 FQLETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1394

Query:  1314 DFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISG 1373
             ++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D L +AA +G++D + G
Sbjct:  1395 NYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKG 1454

Query:  1374 VSECIIMGLPMNVGTGLIKLL 1394
             VSE I++G     GTG   LL
Sbjct:  1455 VSENIMLGQLAPAGTGCFDLL 1475

 Score = 206 (77.6 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 153 (58.9 bits), Expect = 1.6e-68, Sum P(5) = 1.6e-68
 Identities = 52/220 (23%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G D+       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 122 (48.0 bits), Expect = 2.1e-80, Sum P(5) = 2.1e-80
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ +A   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1075 KFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1111

 Score = 120 (47.3 bits), Expect = 1.6e-66, Sum P(5) = 1.6e-66
 Identities = 25/79 (31%), Positives = 46/79 (58%)

Query:   918 YKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSI 977
             ++L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +  E+  V+   G  +
Sbjct:  1335 FQLETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYV 1394

Query:   978 DFRHPMLVADLMTSKGEVL 996
             ++RH  L+ D MT +G ++
Sbjct:  1395 NYRHLALLCDTMTCRGHLM 1413

 Score = 106 (42.4 bits), Expect = 9.8e-79, Sum P(5) = 9.8e-79
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1120 GVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1179

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1180 NPQSTVVAEDQEWVNVYYEMPDFDVAR 1206

 Score = 72 (30.4 bits), Expect = 9.8e-56, Sum P(4) = 9.8e-56
 Identities = 16/38 (42%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +AA +G++D + GVSE I++G     GTG   LL
Sbjct:  1438 DVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1475

 Score = 56 (24.8 bits), Expect = 2.7e-42, Sum P(4) = 2.7e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 2.6e-60, Sum P(5) = 2.6e-60
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.5e-33, Sum P(3) = 1.5e-33
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 7.1e-59, Sum P(5) = 7.1e-59
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>ZFIN|ZDB-GENE-041008-78 [details] [associations]
            symbol:polr2a "polymerase (RNA) II (DNA directed)
            polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
            complex" evidence=IEA] [GO:0006366 "transcription from RNA
            polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
            activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
            activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
            GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
            IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
            Uniprot:F1Q9K4
        Length = 1965

 Score = 264 (98.0 bits), Expect = 5.6e-80, Sum P(5) = 5.6e-80
 Identities = 53/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+++FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   449 DGDIIVFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 508

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   509 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 554

Query:   461 AQTMRI 466
              + M +
Sbjct:   555 GEVMNL 560

 Score = 245 (91.3 bits), Expect = 5.6e-80, Sum P(5) = 5.6e-80
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   811 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 870

Query:   666 QYD 668
             +YD
Sbjct:   871 KYD 873

 Score = 237 (88.5 bits), Expect = 5.6e-80, Sum P(5) = 5.6e-80
 Identities = 53/156 (33%), Positives = 90/156 (57%)

Query:  1240 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1316 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1375

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D MT +G ++ ITRHG+ +     L   SFE T D 
Sbjct:  1376 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGINRQDTGPLMKCSFEETVDV 1435

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
             L +A+ +G++D + GVSE I++G     GTG   LL
Sbjct:  1436 LMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1471

 Score = 207 (77.9 bits), Expect = 5.6e-80, Sum P(5) = 5.6e-80
 Identities = 65/244 (26%), Positives = 120/244 (49%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+   ++ +L+ +C    
Sbjct:    54 GLMDPRQGVIERSGRCQTCAGNMTECPGHFGHIELAKPVFHVGFITKIMKVLRCVCF--F 111

Query:   179 CARVLL--GEEKAAGFRAKLRNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGV--VK 234
             C+++L+     K      K +        RK L   + +  K  ++C    E++    V+
Sbjct:   112 CSKLLVDANNPKIKDILTKSKGQP-----RKRLTH-VYDLCKGKNICEGGEEMDNKFGVE 165

Query:   235 KCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQ 293
             +     I+ EK +    + +  I    L  Y E    N + +  KK      L+P  V +
Sbjct:   166 QPESEDITKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSPERVHE 220

Query:   294 LFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSL 353
             +F+ I  E+  +L M+ + ++P  +I+T L VPP  +RP+V+    + N   L ++   +
Sbjct:   221 IFKRIADEEDIILGMDPKYARPEWMIVTVLPVPPLAVRPAVVMQGSARNQDDLTHKLADI 280

Query:   354 HKLS 357
              K++
Sbjct:   281 VKIN 284

 Score = 150 (57.9 bits), Expect = 5.3e-68, Sum P(5) = 5.3e-68
 Identities = 57/225 (25%), Positives = 106/225 (47%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   483 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 541

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   542 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 589

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHR-----DSYVILRNSELLAGSMDKSTLGS 562
             SLI+ P     +NA ++T        +   ++     D+ VI+ N EL+ G + K +LG+
Sbjct:   590 SLII-PGH---INA-IRTHSTHPDEEDSGPYKNISPGDTKVIVENGELIMGILCKKSLGT 644

Query:   563 GGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
                 ++ +I   + G D+       +  + + +L+  G SIGIGD
Sbjct:   645 SA-GSLVHISYLEMGHDITRLFYSNIQTVVNNWLLIEGHSIGIGD 688

 Score = 122 (48.0 bits), Expect = 2.0e-66, Sum P(5) = 2.0e-66
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query:   904 RAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             + +I E+ + + + ++ L  +G +L  V++   V  V+ +SN+  E++  LGIEA R  +
Sbjct:  1316 KIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKAL 1375

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D MT +G ++
Sbjct:  1376 ERELYHVISFDGSYVNYRHLALLCDTMTCRGHLM 1409

 Score = 119 (46.9 bits), Expect = 5.6e-80, Sum P(5) = 5.6e-80
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ ++   P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1072 KFNQSIAHPGEMVGALAAQSLGEPATQMTLNTFHYAG 1108

 Score = 104 (41.7 bits), Expect = 2.0e-78, Sum P(5) = 2.0e-78
 Identities = 27/87 (31%), Positives = 44/87 (50%)

Query:   764 GVPRIKEIINASRNISTPIITAYL--DKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KE+IN S+   TP +T +L      D + A+ +  RLE TTL +V       + P
Sbjct:  1117 GVPRLKELINISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDP 1176

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             +    ++  D + + + +   D D  R
Sbjct:  1177 NPQNTVVTEDQEWVNVYYEMPDFDVTR 1203

 Score = 69 (29.3 bits), Expect = 2.6e-55, Sum P(4) = 2.6e-55
 Identities = 15/38 (39%), Positives = 24/38 (63%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
             D+  +A+ +G++D + GVSE I++G     GTG   LL
Sbjct:  1434 DVLMEASSHGESDPMKGVSENIMLGQLAPAGTGCFDLL 1471

 Score = 56 (24.8 bits), Expect = 5.5e-42, Sum P(4) = 5.5e-42
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   522 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 560

 Score = 38 (18.4 bits), Expect = 1.9e-58, Sum P(5) = 1.9e-58
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   721 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 758


>WB|WBGene00000123 [details] [associations]
            symbol:ama-1 species:6239 "Caenorhabditis elegans"
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0005665 "DNA-directed RNA polymerase II, core complex"
            evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
            or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0040010 "positive regulation of growth rate"
            evidence=IMP] [GO:0007052 "mitotic spindle organization"
            evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
            [GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
            "developmental process" evidence=IMP] [GO:0006479 "protein
            methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
            activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
            polymerase II promoter" evidence=IMP] InterPro:IPR000684
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
            GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
            GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
            GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
            EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
            STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
            EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
            UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
            GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
            OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
        Length = 1856

 Score = 249 (92.7 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 49/119 (41%), Positives = 78/119 (65%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+++FNRQP+LHK+S+M HR K+LP  TFR N  V +PYNADFDGDEMN+HLPQ+ E 
Sbjct:   446 DGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLET 505

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
             RAE    + +++++  +          L+TP+  + ++   QD +    ++T+++ F +
Sbjct:   506 RAE----IEEIAMVPRQ----------LITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550

 Score = 242 (90.2 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 56/161 (34%), Positives = 90/161 (55%)

Query:  1240 RAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             R +I  E   + V  + L  +G  L  V++   +  V+ +SN+  E+++ LGIEA R  I
Sbjct:  1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D+MT+KG ++ ITRHG+ + +   L   SFE T D 
Sbjct:  1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 1399
             L +AA + + D + GVSE I++G     GTG   L+  V +
Sbjct:  1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1471

 Score = 237 (88.5 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTP+EFFFH MGGREGL+DTAVKTAETGY+QRRL+K++E + V
Sbjct:   808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query:   666 QYD 668
              YD
Sbjct:   868 NYD 870

 Score = 217 (81.4 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 70/239 (29%), Positives = 119/239 (49%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G   +   C TC  NL+DC GHFG+++L  PVFHIG+    + IL+ +C    
Sbjct:    51 GLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFY-- 108

Query:   179 CARVLLGEE--------KAAGFRAKLRNPALSYLVR-KSLKKKILETTKKVSVCPHCGEI 229
             C R+L+ +         K  G  +K R   +  L + KS+ +   E  + +   P     
Sbjct:   109 CGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMN 168

Query:   230 NG--VVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLN 287
             +G  V   CG  + S+ +          +  D+ AE+ + V  N + +  K   ++ T  
Sbjct:   169 DGKKVAGGCGRYQPSYRR----------VGIDINAEWKKNV--NEDTQERK---IMLTAE 213

Query:   288 PLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVIS--DLKSDNDV 344
                VL++F+ I  EDI ++ M+ + ++P  +I T L VPP  +RP+V++    K+ +D+
Sbjct:   214 --RVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDL 270

 Score = 139 (54.0 bits), Expect = 5.0e-68, Sum P(5) = 5.0e-68
 Identities = 51/213 (23%), Positives = 101/213 (47%)

Query:   407 SLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
             +LH    +  RA++  +      L+TP+  + ++   QD +    ++T+++ F +    M
Sbjct:   496 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMM 555

Query:   465 RIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK 524
              +   L   T D  G + +       P + ++   +WTGKQ+FSLI+  N    VN  L+
Sbjct:   556 DLLMYL--PTWD--GKVPQ-------PAI-LKPKPLWTGKQVFSLIIPGN----VNV-LR 598

Query:   525 TKGRAYTANEEFCHR-----DSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
             T      + +   ++     D+ VI+ + ELL+G +   T+G     N+ +++  + G +
Sbjct:   599 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA-GNLLHVVTLELGYE 657

Query:   580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQ 612
             +A      +  + + +L+  G +IGIGD    Q
Sbjct:   658 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQ 690

 Score = 127 (49.8 bits), Expect = 8.9e-66, Sum P(5) = 8.9e-66
 Identities = 30/94 (31%), Positives = 53/94 (56%)

Query:   904 RAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             R +I  E   + V  + L  +G  L  V++   +  V+ +SN+  E+++ LGIEA R  I
Sbjct:  1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D+MT+KG ++
Sbjct:  1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 1404

 Score = 122 (48.0 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ +A  +P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAG 1105

 Score = 105 (42.0 bits), Expect = 9.0e-78, Sum P(5) = 9.0e-78
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEIIN S+ + TP +T +L      D + A+ V  +LE TTL +V       + P
Sbjct:  1114 GVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDP 1173

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             D    +I  D + + + +   D D  R
Sbjct:  1174 DPKNTVIAEDEEWVSIFYEMPDHDLSR 1200

 Score = 66 (28.3 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 710
             D+  +AA + + D + GVSE I++G     GTG   L+  V +
Sbjct:  1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1471

 Score = 58 (25.5 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
 Identities = 39/161 (24%), Positives = 68/161 (42%)

Query:  1206 ILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 1265
             ILKPK         ++  KQ+  S++I G   + R      D E    YK +  GD    
Sbjct:   573 ILKPKP--------LWTGKQVF-SLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDT--K 621

Query:  1266 VMATYG--VKGVKCSS-------NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFR 1316
             V+  +G  + G+ CS        N  + V   LG E A +   + I+ V+  +   I   
Sbjct:   622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA-ANFYSHIQTVI--NAWLIREG 678

Query:  1317 HPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
             H + + D +  +   L I ++ + K K+ V+++    +  D
Sbjct:   679 HTIGIGDTIADQATYLDI-QNTIRKAKQDVVDVIEKAHNDD 718

 Score = 52 (23.4 bits), Expect = 2.7e-60, Sum P(5) = 2.7e-60
 Identities = 36/122 (29%), Positives = 50/122 (40%)

Query:   870 ILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 929
             ILKPK         ++  KQ+  S++I G   + R      D E    YK +  GD    
Sbjct:   573 ILKPKP--------LWTGKQVF-SLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDT--K 621

Query:   930 VMATYG--VKGVKCSS-------NNTYEVYKTLGIEAAR---STIMTEIK--LVMENHGM 975
             V+  +G  + G+ CS        N  + V   LG E A    S I T I   L+ E H +
Sbjct:   622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 681

Query:   976 SI 977
              I
Sbjct:   682 GI 683

 Score = 42 (19.8 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
 Identities = 7/32 (21%), Positives = 19/32 (59%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFN 60
             L+TP+  + ++   QD +    ++T+++ F +
Sbjct:   519 LITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550

 Score = 40 (19.1 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
 Identities = 29/119 (24%), Positives = 51/119 (42%)

Query:   805 RTTLGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVS 864
             RTT  ++CE I EV   +     I+ +MD +    +  D   + Y       +   +T  
Sbjct:  1348 RTTSNDICE-IFEVLGIEAVRKAIEREMDNV----ISFDGSYVNY--RHLALLCDVMTAK 1400

Query:   865 GHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIH-EED-VEGVTKYKLL 921
             GH   I +        N +  ++  L+     + V  +  A +H EED V+GV++  +L
Sbjct:  1401 GHLMAITR-----HGINRQ--EVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIML 1452

 Score = 40 (19.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query:  1303 KLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRH 1337
             K ++  +G  +D R+    ADL    G    + RH
Sbjct:   411 KYIIRENGARVDLRYHPRAADLHLQPG--YRVERH 443

 Score = 39 (18.8 bits), Expect = 2.8e-38, Sum P(4) = 2.8e-38
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query:   967 KLVMENHGMSIDFRHPMLVADLMTSKG 993
             K ++  +G  +D R+    ADL    G
Sbjct:   411 KYIIRENGARVDLRYHPRAADLHLQPG 437


>UNIPROTKB|P16356 [details] [associations]
            symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
            species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
            Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
            PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
            GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
            GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
            EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
            PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
            PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
            GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
            WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
            InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
            Uniprot:P16356
        Length = 1856

 Score = 249 (92.7 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 49/119 (41%), Positives = 78/119 (65%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+++FNRQP+LHK+S+M HR K+LP  TFR N  V +PYNADFDGDEMN+HLPQ+ E 
Sbjct:   446 DGDIIVFNRQPTLHKMSMMGHRVKILPWSTFRMNLSVTSPYNADFDGDEMNLHLPQSLET 505

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
             RAE    + +++++  +          L+TP+  + ++   QD +    ++T+++ F +
Sbjct:   506 RAE----IEEIAMVPRQ----------LITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550

 Score = 242 (90.2 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 56/161 (34%), Positives = 90/161 (55%)

Query:  1240 RAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 1298
             R +I  E   + V  + L  +G  L  V++   +  V+ +SN+  E+++ LGIEA R  I
Sbjct:  1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370

Query:  1299 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDH 1358
               E+  V+   G  +++RH  L+ D+MT+KG ++ ITRHG+ + +   L   SFE T D 
Sbjct:  1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLMAITRHGINRQEVGALMRCSFEETVDI 1430

Query:  1359 LFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 1399
             L +AA + + D + GVSE I++G     GTG   L+  V +
Sbjct:  1431 LMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1471

 Score = 237 (88.5 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 43/63 (68%), Positives = 54/63 (85%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTP+EFFFH MGGREGL+DTAVKTAETGY+QRRL+K++E + V
Sbjct:   808 DYGPESKGFVENSYLAGLTPSEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKAMESVMV 867

Query:   666 QYD 668
              YD
Sbjct:   868 NYD 870

 Score = 217 (81.4 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 70/239 (29%), Positives = 119/239 (49%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G   +   C TC  NL+DC GHFG+++L  PVFHIG+    + IL+ +C    
Sbjct:    51 GLMDPRQGVIDRRGRCMTCAGNLTDCPGHFGHLELAKPVFHIGFLTKTLKILRCVCFY-- 108

Query:   179 CARVLLGEE--------KAAGFRAKLRNPALSYLVR-KSLKKKILETTKKVSVCPHCGEI 229
             C R+L+ +         K  G  +K R   +  L + KS+ +   E  + +   P     
Sbjct:   109 CGRLLIDKSAPRVLEILKKTGTNSKKRLTMIYDLCKAKSVCEGAAEKEEGMPDDPDDPMN 168

Query:   230 NG--VVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLN 287
             +G  V   CG  + S+ +          +  D+ AE+ + V  N + +  K   ++ T  
Sbjct:   169 DGKKVAGGCGRYQPSYRR----------VGIDINAEWKKNV--NEDTQERK---IMLTAE 213

Query:   288 PLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVIS--DLKSDNDV 344
                VL++F+ I  EDI ++ M+ + ++P  +I T L VPP  +RP+V++    K+ +D+
Sbjct:   214 --RVLEVFQQITDEDILVIGMDPQFARPEWMICTVLPVPPLAVRPAVVTFGSAKNQDDL 270

 Score = 139 (54.0 bits), Expect = 5.0e-68, Sum P(5) = 5.0e-68
 Identities = 51/213 (23%), Positives = 101/213 (47%)

Query:   407 SLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
             +LH    +  RA++  +      L+TP+  + ++   QD +    ++T+++ F +    M
Sbjct:   496 NLHLPQSLETRAEIEEIAMVPRQLITPQANKPVMGIVQDTLCAVRMMTKRDVFIDWPFMM 555

Query:   465 RIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVNANLK 524
              +   L   T D  G + +       P + ++   +WTGKQ+FSLI+  N    VN  L+
Sbjct:   556 DLLMYL--PTWD--GKVPQ-------PAI-LKPKPLWTGKQVFSLIIPGN----VNV-LR 598

Query:   525 TKGRAYTANEEFCHR-----DSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGED 579
             T      + +   ++     D+ VI+ + ELL+G +   T+G     N+ +++  + G +
Sbjct:   599 THSTHPDSEDSGPYKWISPGDTKVIIEHGELLSGIVCSKTVGKSA-GNLLHVVTLELGYE 657

Query:   580 VAVTAMWRLSRMTSFYLMNRGFSIGIGDVTPGQ 612
             +A      +  + + +L+  G +IGIGD    Q
Sbjct:   658 IAANFYSHIQTVINAWLIREGHTIGIGDTIADQ 690

 Score = 127 (49.8 bits), Expect = 8.9e-66, Sum P(5) = 8.9e-66
 Identities = 30/94 (31%), Positives = 53/94 (56%)

Query:   904 RAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTI 962
             R +I  E   + V  + L  +G  L  V++   +  V+ +SN+  E+++ LGIEA R  I
Sbjct:  1311 RIIITPEGGFKSVADWILETDGTALLRVLSERQIDPVRTTSNDICEIFEVLGIEAVRKAI 1370

Query:   963 MTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
               E+  V+   G  +++RH  L+ D+MT+KG ++
Sbjct:  1371 EREMDNVISFDGSYVNYRHLALLCDVMTAKGHLM 1404

 Score = 122 (48.0 bits), Expect = 1.5e-79, Sum P(5) = 1.5e-79
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++ +A  +P   VGALAAQS+GEP TQMTL TFH+AG
Sbjct:  1069 RFQQAIAQPGEMVGALAAQSLGEPATQMTLNTFHYAG 1105

 Score = 105 (42.0 bits), Expect = 9.0e-78, Sum P(5) = 9.0e-78
 Identities = 30/87 (34%), Positives = 45/87 (51%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDT--DLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
             GVPR+KEIIN S+ + TP +T +L      D + A+ V  +LE TTL +V       + P
Sbjct:  1114 GVPRLKEIINVSKTLKTPSLTVFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDP 1173

Query:   822 DDSFILIKLDMDRIRLLHLEVDIDSIR 848
             D    +I  D + + + +   D D  R
Sbjct:  1174 DPKNTVIAEDEEWVSIFYEMPDHDLSR 1200

 Score = 66 (28.3 bits), Expect = 1.0e-53, Sum P(4) = 1.0e-53
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 710
             D+  +AA + + D + GVSE I++G     GTG   L+  V +
Sbjct:  1429 DILMEAAVHAEEDPVKGVSENIMLGQLARCGTGCFDLVLDVEK 1471

 Score = 58 (25.5 bits), Expect = 1.3e-33, Sum P(3) = 1.3e-33
 Identities = 39/161 (24%), Positives = 68/161 (42%)

Query:  1206 ILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 1265
             ILKPK         ++  KQ+  S++I G   + R      D E    YK +  GD    
Sbjct:   573 ILKPKP--------LWTGKQVF-SLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDT--K 621

Query:  1266 VMATYG--VKGVKCSS-------NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFR 1316
             V+  +G  + G+ CS        N  + V   LG E A +   + I+ V+  +   I   
Sbjct:   622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIA-ANFYSHIQTVI--NAWLIREG 678

Query:  1317 HPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSD 1357
             H + + D +  +   L I ++ + K K+ V+++    +  D
Sbjct:   679 HTIGIGDTIADQATYLDI-QNTIRKAKQDVVDVIEKAHNDD 718

 Score = 52 (23.4 bits), Expect = 2.7e-60, Sum P(5) = 2.7e-60
 Identities = 36/122 (29%), Positives = 50/122 (40%)

Query:   870 ILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRD 929
             ILKPK         ++  KQ+  S++I G   + R      D E    YK +  GD    
Sbjct:   573 ILKPKP--------LWTGKQVF-SLIIPGNVNVLRTHSTHPDSEDSGPYKWISPGDT--K 621

Query:   930 VMATYG--VKGVKCSS-------NNTYEVYKTLGIEAAR---STIMTEIK--LVMENHGM 975
             V+  +G  + G+ CS        N  + V   LG E A    S I T I   L+ E H +
Sbjct:   622 VIIEHGELLSGIVCSKTVGKSAGNLLHVVTLELGYEIAANFYSHIQTVINAWLIREGHTI 681

Query:   976 SI 977
              I
Sbjct:   682 GI 683

 Score = 42 (19.8 bits), Expect = 1.2e-40, Sum P(4) = 1.2e-40
 Identities = 7/32 (21%), Positives = 19/32 (59%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFN 60
             L+TP+  + ++   QD +    ++T+++ F +
Sbjct:   519 LITPQANKPVMGIVQDTLCAVRMMTKRDVFID 550

 Score = 40 (19.1 bits), Expect = 5.1e-51, Sum P(4) = 5.1e-51
 Identities = 29/119 (24%), Positives = 51/119 (42%)

Query:   805 RTTLGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVS 864
             RTT  ++CE I EV   +     I+ +MD +    +  D   + Y       +   +T  
Sbjct:  1348 RTTSNDICE-IFEVLGIEAVRKAIEREMDNV----ISFDGSYVNY--RHLALLCDVMTAK 1400

Query:   865 GHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQGINRAVIH-EED-VEGVTKYKLL 921
             GH   I +        N +  ++  L+     + V  +  A +H EED V+GV++  +L
Sbjct:  1401 GHLMAITR-----HGINRQ--EVGALMRCSFEETVDILMEAAVHAEEDPVKGVSENIML 1452

 Score = 40 (19.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query:  1303 KLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRH 1337
             K ++  +G  +D R+    ADL    G    + RH
Sbjct:   411 KYIIRENGARVDLRYHPRAADLHLQPG--YRVERH 443

 Score = 39 (18.8 bits), Expect = 2.8e-38, Sum P(4) = 2.8e-38
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query:   967 KLVMENHGMSIDFRHPMLVADLMTSKG 993
             K ++  +G  +D R+    ADL    G
Sbjct:   411 KYIIRENGARVDLRYHPRAADLHLQPG 437


>FB|FBgn0019938 [details] [associations]
            symbol:RpI1 "RNA polymerase I subunit" species:7227
            "Drosophila melanogaster" [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
            RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
            evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
            RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
            SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
            GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
            InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
            Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
        Length = 1642

 Score = 320 (117.7 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 94/285 (32%), Positives = 143/285 (50%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + DV+L NRQPSLHK SIM H+A++L   +TFR +   C  YNADFDGDEMN H PQ+E 
Sbjct:   521 NGDVLLLNRQPSLHKPSIMGHKARILHGEKTFRLHYSNCKAYNADFDGDEMNAHYPQSEV 580

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
             ARAEA    + L  +A          SN + P++G  L    QD +  G  L+ +  FFN
Sbjct:   581 ARAEA----YNLVNVA----------SNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFN 626

Query:   460 RAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILK---PNRD 516
             R    ++   +    S +   IK        P   ++ AV+W+GKQI S I+    P   
Sbjct:   627 REDYQQL---VFQGLSQLKKDIKLL------PPTILKPAVLWSGKQILSTIIINIIPEGY 677

Query:   517 CPVNAN--LKTKGRAYTANEE---FCHR--------DSYVILRNSELLAGSMDKSTLGSG 563
               +N +   K  G+ +  +      C          +S V +RN ELL G +DK   G+ 
Sbjct:   678 ERINLDSFAKIAGKNWNVSRPRPPICGTNPEGNDLSESQVQIRNGELLVGVLDKQQYGAT 737

Query:   564 GKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
                 + + +   +G DV+   +   +++ +F+L   GF++G+ D+
Sbjct:   738 -TYGLIHCMYELYGGDVSTLLLTAFTKVFTFFLQLEGFTLGVKDI 781

 Score = 209 (78.6 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 55/177 (31%), Positives = 98/177 (55%)

Query:  1223 MKQLLPSVVIKGVQGINRAVIHE-EDVEGVTKYKLLVEGDNLRDVMATYGVKGV-KCSSN 1280
             +++L    V+  VQ I RA+I++  D + + K     +G N+ ++     +  + +  SN
Sbjct:  1470 IRELAGKSVVHQVQHIKRAIIYKGNDDDQLLK----TDGINIGEMFQHNKILDLNRLYSN 1525

Query:  1281 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLA 1340
             + + + +T GIEAA   I+ E+  V + +G+++D RH  L+AD MT  G    ++R G+ 
Sbjct:  1526 DIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDGTFQPLSRKGM- 1584

Query:  1341 KMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 1397
             +   S L   SFE++   L  AA +G+ D +S  S  +++GLP+  GTG  +LL  +
Sbjct:  1585 EHSSSPLQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

 Score = 190 (71.9 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 33/58 (56%), Positives = 44/58 (75%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             GF+   F +G+ P +FFFH M GREGL+DTAVKT+ +GY+QR L+K LE L V YD++
Sbjct:   927 GFIDGRFMTGIQPQDFFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVHYDLT 984

 Score = 126 (49.4 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 25/43 (58%), Positives = 30/43 (69%)

Query:  1103 AEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             A+  R K +++   P   VG +AAQSIGEP TQMTL TFHFAG
Sbjct:  1160 ADIMRVKTIKSLAAPGEPVGLIAAQSIGEPSTQMTLNTFHFAG 1202

 Score = 125 (49.1 bits), Expect = 2.9e-54, Sum P(5) = 2.9e-54
 Identities = 33/109 (30%), Positives = 61/109 (55%)

Query:   887 MKQLLPSVVIKGVQGINRAVIHE-EDVEGVTKYKLLVEGDNLRDVMATYGVKGV-KCSSN 944
             +++L    V+  VQ I RA+I++  D + + K     +G N+ ++     +  + +  SN
Sbjct:  1470 IRELAGKSVVHQVQHIKRAIIYKGNDDDQLLK----TDGINIGEMFQHNKILDLNRLYSN 1525

Query:   945 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             + + + +T GIEAA   I+ E+  V + +G+++D RH  L+AD MT  G
Sbjct:  1526 DIHAIARTYGIEAASQVIVKEVSNVFKVYGITVDRRHLSLIADYMTFDG 1574

 Score = 116 (45.9 bits), Expect = 3.6e-69, Sum P(5) = 3.6e-69
 Identities = 37/142 (26%), Positives = 69/142 (48%)

Query:    83 IEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEAN-CTTCGQNL 141
             +E  V  +  +++ S +++++   +  D     IP GL D RMG+  +  + C TC   L
Sbjct:    16 LEFAVFTDQEIRKLSVVKVITGITF--DALGHAIPGGLYDIRMGSYGRCMDPCGTC-LKL 72

Query:   142 SDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPAL 201
              DC GH G+I+L  PV++  + + V  +L   C +  C ++ + + +      +LR    
Sbjct:    73 QDCPGHMGHIELGTPVYNPFFIKFVQRLLCIFCLH--CYKLQMKDHECEIIMLQLRLIDA 130

Query:   202 SYLVRKSLKKKILETTKKVSVC 223
              Y++    + + LE  K   VC
Sbjct:   131 GYII----EAQELELFKSEIVC 148

 Score = 70 (29.7 bits), Expect = 3.8e-32, Sum P(3) = 3.8e-32
 Identities = 16/51 (31%), Positives = 29/51 (56%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 708
             L+ +  +  + F   AA +G+ D +S  S  +++GLP+  GTG  +LL  +
Sbjct:  1591 LQQMSFESSLQFLKSAAGFGRADELSSPSSRLMVGLPVRNGTGAFELLTKI 1641

 Score = 66 (28.3 bits), Expect = 6.1e-63, Sum P(5) = 6.1e-63
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query:   764 GVPRIKEIIN-ASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYI 815
             G+PR++EI+  AS NI TP +   + K      A  ++  L   TL  + EY+
Sbjct:  1211 GIPRLREILMLASSNIKTPSMDIPI-KPGQQHQAEKLRINLNSVTLANLLEYV 1262

 Score = 61 (26.5 bits), Expect = 3.5e-34, Sum P(5) = 3.5e-34
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query:    27 SNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             SN + P++G  L    QD +  G  L+ +  FFNR
Sbjct:   593 SNYLVPKDGTPLGGLIQDHVISGVKLSIRGRFFNR 627

 Score = 46 (21.3 bits), Expect = 2.2e-40, Sum P(5) = 2.2e-40
 Identities = 11/39 (28%), Positives = 21/39 (53%)

Query:   417 RAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 455
             +++++  N  NLV  +NG+++       I   Y L +KN
Sbjct:   143 KSEIVCQNTENLVAIKNGDMV----HPHIAAMYKLLEKN 177

 Score = 44 (20.5 bits), Expect = 1.1e-61, Sum P(5) = 1.1e-61
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 56
             +++  N  NLV  +NG+++       I   Y L +KN
Sbjct:   145 EIVCQNTENLVAIKNGDMV----HPHIAAMYKLLEKN 177

 Score = 40 (19.1 bits), Expect = 8.6e-40, Sum P(5) = 8.6e-40
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query:   324 LVPPNCIRPSVISDLKSDNDVVLFNRQP 351
             L+PP  ++P+V+   K     ++ N  P
Sbjct:   647 LLPPTILKPAVLWSGKQILSTIIINIIP 674

 Score = 39 (18.8 bits), Expect = 4.7e-25, Sum P(5) = 4.7e-25
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query:   918 YKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMT 964
             Y  ++E +++ +V+  Y   G +  +      Y+TL  E A   + T
Sbjct:   326 YINIIENNHVLNVVLKYMKGGQEKLTEEAKAAYQTLKGETAHEKLYT 372

 Score = 37 (18.1 bits), Expect = 6.1e-60, Sum P(5) = 6.1e-60
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query:   768 IKEIINASRNISTPIITAYLDKDTDLD 794
             I ++ NASR     +I    D D D D
Sbjct:  1317 ILKVSNASRTTKIVVIDDKKDADKDDD 1343


>CGD|CAL0001661 [details] [associations]
            symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
            "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
            complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
            evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
            EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
            ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
            GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
            Uniprot:Q59LW3
        Length = 1665

 Score = 254 (94.5 bits), Expect = 8.6e-69, Sum P(5) = 8.6e-69
 Identities = 69/163 (42%), Positives = 88/163 (53%)

Query:   303 IPLLLMNAELSKPSDLILTRLLVPP---NCIRPSVISDLKSDNDVVLFNRQPSLHKLSIM 359
             I L+ M  E  K    I  +LL P    + +   V   +K+ NDVV+ NRQP+LHK S+M
Sbjct:   528 ISLIGMTLEQRKA---IANQLLTPNGGNSVVGKKVYRHIKN-NDVVIMNRQPTLHKASMM 583

Query:   360 AHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRA 418
              H+ +VLP  +T R +      YNADFDGDEMN+H PQ E ARAEAL             
Sbjct:   584 GHKVRVLPGEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALN------------ 631

Query:   419 KVLMANKSN-LVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
                +AN  N  +TP +G  L    QD I+ G  LT K+ FFNR
Sbjct:   632 ---LANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNR 671

 Score = 242 (90.2 bits), Expect = 8.6e-69, Sum P(5) = 8.6e-69
 Identities = 63/180 (35%), Positives = 93/180 (51%)

Query:  1223 MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLR---DVMATYGVKGVKCSS 1279
             ++ LL  VV++ +  I R +  E D +   K  L  EG N R   D      V G+  +S
Sbjct:  1489 VEDLLRKVVVREIPHIGRCIRPEPDAK-TGKRILTTEGVNFRAMWDQDDFINVNGI--TS 1545

Query:  1280 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGL 1339
             N+ Y V KT G+EAAR+TI+ EI  V + +G+S+  RH  L+AD+MT +G  L   R G+
Sbjct:  1546 NDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYLAFNRQGI 1605

Query:  1340 AKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 1399
                  + + + S+E T   L  A   G  + +   S  I+MG   NVGTG   +   +PR
Sbjct:  1606 DSSTSAFMKM-SYETTCQFLTKAVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQMPR 1664

 Score = 188 (71.2 bits), Expect = 6.9e-62, Sum P(5) = 6.9e-62
 Identities = 60/197 (30%), Positives = 98/197 (49%)

Query:   417 RAKVL-MANKSN-LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADT 474
             RA+ L +AN  N  +TP +G  L    QD I+ G  LT K+ FFNR    ++    I   
Sbjct:   626 RAEALNLANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNRETYQQLIYGCIRPE 685

Query:   475 SDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLIL---KPNRDCPVNANLKTKGRAYT 531
                 G   +    +  P ++ +  ++WTGKQ+ + +L   KP+    VN   K K ++  
Sbjct:   686 D---GHTSKNRIVTVPPAIY-KPEMLWTGKQVITTVLLNIKPDNVPGVNLISKNKIKSDY 741

Query:   532 ANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRM 591
              +E     +  VI +N ELL+G +DKS  G+  +  + + L   +G  VA  A+  L R+
Sbjct:   742 WSESSTENE--VIFKNGELLSGILDKSQYGAS-QFGIVHSLHEVYGPTVAGKALSVLGRL 798

Query:   592 TSFYLMNRGFSIGIGDV 608
              + Y+M   F+ G+ D+
Sbjct:   799 FTNYIMMTAFTCGMDDL 815

 Score = 184 (69.8 bits), Expect = 8.6e-69, Sum P(5) = 8.6e-69
 Identities = 34/64 (53%), Positives = 46/64 (71%)

Query:   607 DVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             D   G G+++  F+SG+ P E++FH M GREGL+DTAVKT+ +GY+QR L K LE + V 
Sbjct:   957 DARAG-GYIKQRFYSGIRPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVS 1015

Query:   667 YDMS 670
             YD S
Sbjct:  1016 YDNS 1019

 Score = 170 (64.9 bits), Expect = 1.4e-53, Sum P(5) = 1.4e-53
 Identities = 44/113 (38%), Positives = 64/113 (56%)

Query:   887 MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLR---DVMATYGVKGVKCSS 943
             ++ LL  VV++ +  I R +  E D +   K  L  EG N R   D      V G+  +S
Sbjct:  1489 VEDLLRKVVVREIPHIGRCIRPEPDAK-TGKRILTTEGVNFRAMWDQDDFINVNGI--TS 1545

Query:   944 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
             N+ Y V KT G+EAAR+TI+ EI  V + +G+S+  RH  L+AD+MT +G  L
Sbjct:  1546 NDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISVSSRHLDLIADMMTREGTYL 1598

 Score = 144 (55.7 bits), Expect = 8.6e-69, Sum P(5) = 8.6e-69
 Identities = 46/176 (26%), Positives = 83/176 (47%)

Query:    87 VTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVG 146
             V  ++ +++ S  QI +  ++  D    PI  GL D  +G   +   CTTCG +   C G
Sbjct:    18 VLSDEEIRKLSAKQITNPIVF--DNLGHPINGGLYDLSLGAFLRNV-CTTCGLDEKFCPG 74

Query:   147 HFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVR 206
             H G+I+LP+PV++  +F  +   L+S C    C +  L + +   F  KL       L+ 
Sbjct:    75 HLGHIELPVPVYNPMFFNQLYIFLRSACLY--CHKFKLNQLEVHNFECKLHLIQYGLLLE 132

Query:   207 -KSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLL 261
                L   + +++K  SV    GE N   +  G   +  +  K+  K+++  V++ +
Sbjct:   133 CVELDNIMAKSSKSSSVIDVDGEDNDDEEGGG--SVDEKSKKDLMKRRELFVKNAI 186

 Score = 137 (53.3 bits), Expect = 8.6e-69, Sum P(5) = 8.6e-69
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             KY+R+ I P  AVG +A+QSIGEP TQMTL TFHFAG
Sbjct:  1162 KYMRSLINPGEAVGIIASQSIGEPSTQMTLNTFHFAG 1198

 Score = 78 (32.5 bits), Expect = 1.1e-40, Sum P(4) = 1.1e-40
 Identities = 18/40 (45%), Positives = 23/40 (57%)

Query:    23 MANKSN-LVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             +AN  N  +TP +G  L    QD I+ G  LT K+ FFNR
Sbjct:   632 LANTDNQYLTPTSGSPLRGLIQDHISAGVWLTNKDTFFNR 671

 Score = 62 (26.9 bits), Expect = 5.1e-61, Sum P(5) = 5.1e-61
 Identities = 18/60 (30%), Positives = 33/60 (55%)

Query:   764 GVPRIKEII-NASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPD 822
             G+PR++EII  AS +I TP +T  +  D + + A      + R  + E   ++++V V +
Sbjct:  1207 GIPRMREIIMTASASIKTPQMTLPILADVNDEQADAFCKSVARVVMSE---FVDKVVVTE 1263

 Score = 60 (26.2 bits), Expect = 2.7e-42, Sum P(5) = 2.7e-42
 Identities = 22/82 (26%), Positives = 40/82 (48%)

Query:   900 QGIN-RAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSS-NNTYEVYKTLGIEA 957
             +G+N RA+  ++D   V      +  +++  V+ TYGV+  + +  N  Y V+ T GI  
Sbjct:  1524 EGVNFRAMWDQDDFINVNG----ITSNDVYAVLKTYGVEAARNTIVNEIYRVFDTYGISV 1579

Query:   958 ARSTIMTEIKLVMENHGMSIDF 979
             + S  +  I  +M   G  + F
Sbjct:  1580 S-SRHLDLIADMMTREGTYLAF 1600

 Score = 52 (23.4 bits), Expect = 5.4e-40, Sum P(4) = 5.4e-40
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 710
             A   G  + +   S  I+MG   NVGTG   +   +PR
Sbjct:  1627 AVLDGDREELESPSAKIVMGKLSNVGTGSFDVFAQMPR 1664

 Score = 50 (22.7 bits), Expect = 8.9e-60, Sum P(5) = 8.9e-60
 Identities = 26/128 (20%), Positives = 48/128 (37%)

Query:   952 TLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTP-VELKRLLDD 1010
             TLGI   R  IMT    + +   M++    P+L AD+   + +        V +   +D 
Sbjct:  1205 TLGIPRMREIIMTASASI-KTPQMTL----PIL-ADVNDEQADAFCKSVARVVMSEFVDK 1258

Query:  1011 IIAKNSSRSDP--SLSAQEILALSNETLDSKEFLQDTSENFVRDIXXXXXXXXXXXXVTS 1068
             ++   ++  D   S S   ++ L   T +  E   D S+  + D+            +  
Sbjct:  1259 VVVTETTSQDVDGSNSRSYVIGLKFYTKEEYETEYDISQEQLEDVITSKFLHALEGQIVK 1318

Query:  1069 HQDKVSQP 1076
                K  +P
Sbjct:  1319 EVKKQKKP 1326

 Score = 44 (20.5 bits), Expect = 2.8e-26, Sum P(4) = 2.8e-26
 Identities = 20/72 (27%), Positives = 31/72 (43%)

Query:   208 SLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEA 267
             S  KK+ ++ KK    PH  +   V+K   +L +    Y N  K   ++ E    + +  
Sbjct:  1078 SYSKKVRKSLKKQKDVPHYDQ---VIKYDPVLNV----Y-NPAKYLGSVSEKFQEKLDTY 1129

Query:   268 VKFNPEIEAHKK 279
             V  NP I A  K
Sbjct:  1130 VSKNPTIFAQSK 1141

 Score = 41 (19.5 bits), Expect = 5.3e-54, Sum P(5) = 5.3e-54
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query:   757 DYKLSQDGVPRIKEIINASRNISTPIITAY--LDKDTDLDYARIVKGRLE 804
             D +L+ +G    K+I+  S +I     T    LD+DT  +   +++ RLE
Sbjct:   814 DLRLTDEGNTWRKDILKQSVDIGRVAATEVTNLDEDTKNNNKELLR-RLE 862


>RGD|620824 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
            transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
            GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
            EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
            UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
            PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
            UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
            ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
        Length = 1716

 Score = 295 (108.9 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 97/320 (30%), Positives = 147/320 (45%)

Query:   301 EDIPLLLMNAELSKPSDLILTRLLVPPNCI-RPS---VISDLKSDNDVVLFNRQPSLHKL 356
             ED     ++A  +   + +  +LL P   I +P    V+     + D++L NRQP+LH+ 
Sbjct:   507 EDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRP 566

Query:   357 SIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMA 415
             SI AHRA +LP  +  R +   C  YNADFDGDEMN H PQ+E  RAEA           
Sbjct:   567 SIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAY---------- 616

Query:   416 HRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTS 475
                 VL       + P++G+ L    QD +  G  +T +  FF R Q M +    + D  
Sbjct:   617 ----VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKV 672

Query:   476 DIC-----GIIKRFSWRSWNPVVFVRTAVIWTGKQIFS-LILKPNRDCPVNANLKTKGRA 529
                      I+K F    W     V T +I    + ++ L L         A +K K R 
Sbjct:   673 GRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRP 730

Query:   530 YTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLS 589
                 +     +S VI+R  ELL G +DK+  GS     V +     +G + +   +  L+
Sbjct:   731 VPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLV-HCCYEIYGGETSGRVLTCLA 789

Query:   590 RMTSFYL-MNRGFSIGIGDV 608
             R+ + YL + RGF++G+ D+
Sbjct:   790 RLFTAYLQLYRGFTLGVEDI 809

 Score = 198 (74.8 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L +
Sbjct:   949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008

Query:   666 QYDMS 670
             QYD++
Sbjct:  1009 QYDLT 1013

 Score = 189 (71.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 54/172 (31%), Positives = 87/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTY 1283
             L  + ++   +GI R +++E  + +   ++ L  EG NL ++     V  ++   SN+ +
Sbjct:  1543 LAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIH 1602

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              V  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1603 AVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSS 1661

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1662 SSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1713

 Score = 135 (52.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1206 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1264

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT 1198
             + I+   + V + + +  + R + +   LT
Sbjct:  1265 N-IKTPMMSVPVFNTKKALRRVKSLKKQLT 1293

 Score = 121 (47.7 bits), Expect = 1.2e-53, Sum P(6) = 1.2e-53
 Identities = 35/106 (33%), Positives = 57/106 (53%)

Query:   890 LLPSVVIKGVQGINRAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTY 947
             L  + ++   +GI R +++E  + +   ++ L  EG NL ++     V  ++   SN+ +
Sbjct:  1543 LAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIH 1602

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              V  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1603 AVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1648

 Score = 120 (47.3 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P   GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYV-DSLGNPSADGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+IDLPL V++   F  +  +L+  C N    TC R  +
Sbjct:    70 DFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAI 117

 Score = 78 (32.5 bits), Expect = 1.3e-60, Sum P(6) = 1.3e-60
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV + ++
Sbjct:  1251 GIPRLREILMVASANIKTPMMSVPVFNTKKALRRVKSLKKQLTRVCLGEVLQKVD 1305

 Score = 66 (28.3 bits), Expect = 5.6e-35, Sum P(4) = 5.6e-35
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   617 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663

 Score = 57 (25.1 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1665 LQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1713

 Score = 47 (21.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 36/136 (26%), Positives = 49/136 (36%)

Query:   206 RKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYN 265
             R  L     +T      CPHC     VV+K    K++   Y     KK    +D  AE  
Sbjct:   188 RSKLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTIT-YPAMVHKKSG-QKD--AELP 243

Query:   266 EAVKFNPEIEAHKKFGLIQTLNPLEVLQ-LFEAIPLEDIPLLLMNAELS--------KPS 316
             E     P I+   + G    L P    + LF     E   L  + + L          PS
Sbjct:   244 EGAPAAPGID-EAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 302

Query:   317 DLILTRLLVPPNCIRP 332
                L  ++VPP+  RP
Sbjct:   303 MFFLDFIVVPPSRYRP 318

 Score = 40 (19.1 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
 Identities = 33/124 (26%), Positives = 49/124 (39%)

Query:   909 EEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTY--EVYKTLGIEAARST-IMTE 965
             +E++E  T  K+L   +NL      + VK V C S +      +KT  + A R     T 
Sbjct:   158 QEELEEYTS-KILQ--NNLLGSQGAH-VKNV-CESRSKLVAHFWKT-HMAAKRCPHCKTG 211

Query:   966 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSA 1025
               +V + H   +   +P +V      K   L  G P      +D+          PS SA
Sbjct:   212 RSVVRKEHNSKLTITYPAMVHKKSGQKDAELPEGAPAAPG--IDEAQMGKRGYLTPS-SA 268

Query:  1026 QEIL 1029
             QE L
Sbjct:   269 QEHL 272


>UNIPROTKB|G3V7B7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
            GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 UniGene:Rn.24877
            Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
        Length = 1716

 Score = 295 (108.9 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 97/320 (30%), Positives = 147/320 (45%)

Query:   301 EDIPLLLMNAELSKPSDLILTRLLVPPNCI-RPS---VISDLKSDNDVVLFNRQPSLHKL 356
             ED     ++A  +   + +  +LL P   I +P    V+     + D++L NRQP+LH+ 
Sbjct:   507 EDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRP 566

Query:   357 SIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMA 415
             SI AHRA +LP  +  R +   C  YNADFDGDEMN H PQ+E  RAEA           
Sbjct:   567 SIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAY---------- 616

Query:   416 HRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTS 475
                 VL       + P++G+ L    QD +  G  +T +  FF R Q M +    + D  
Sbjct:   617 ----VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKV 672

Query:   476 DIC-----GIIKRFSWRSWNPVVFVRTAVIWTGKQIFS-LILKPNRDCPVNANLKTKGRA 529
                      I+K F    W     V T +I    + ++ L L         A +K K R 
Sbjct:   673 GRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRP 730

Query:   530 YTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLS 589
                 +     +S VI+R  ELL G +DK+  GS     V +     +G + +   +  L+
Sbjct:   731 VPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLV-HCCYEIYGGETSGRVLTCLA 789

Query:   590 RMTSFYL-MNRGFSIGIGDV 608
             R+ + YL + RGF++G+ D+
Sbjct:   790 RLFTAYLQLYRGFTLGVEDI 809

 Score = 198 (74.8 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L +
Sbjct:   949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008

Query:   666 QYDMS 670
             QYD++
Sbjct:  1009 QYDLT 1013

 Score = 189 (71.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 54/172 (31%), Positives = 87/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTY 1283
             L  + ++   +GI R +++E  + +   ++ L  EG NL ++     V  ++   SN+ +
Sbjct:  1543 LAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIH 1602

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              V  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1603 AVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-QSS 1661

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1662 SSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1713

 Score = 135 (52.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 35/90 (38%), Positives = 50/90 (55%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1206 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1264

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT 1198
             + I+   + V + + +  + R + +   LT
Sbjct:  1265 N-IKTPMMSVPVFNTKKALRRVKSLKKQLT 1293

 Score = 121 (47.7 bits), Expect = 1.2e-53, Sum P(6) = 1.2e-53
 Identities = 35/106 (33%), Positives = 57/106 (53%)

Query:   890 LLPSVVIKGVQGINRAVIHEE-DVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTY 947
             L  + ++   +GI R +++E  + +   ++ L  EG NL ++     V  ++   SN+ +
Sbjct:  1543 LAHNAIVYTTKGITRCLLNETINSKNEKEFVLNTEGINLPELFKYSEVLDLRRLYSNDIH 1602

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              V  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1603 AVANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1648

 Score = 120 (47.3 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 32/108 (29%), Positives = 56/108 (51%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P   GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYV-DSLGNPSADGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+IDLPL V++   F  +  +L+  C N    TC R  +
Sbjct:    70 DFNNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAAI 117

 Score = 78 (32.5 bits), Expect = 1.3e-60, Sum P(6) = 1.3e-60
 Identities = 19/55 (34%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV + ++
Sbjct:  1251 GIPRLREILMVASANIKTPMMSVPVFNTKKALRRVKSLKKQLTRVCLGEVLQKVD 1305

 Score = 66 (28.3 bits), Expect = 5.6e-35, Sum P(4) = 5.6e-35
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   617 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663

 Score = 57 (25.1 bits), Expect = 2.9e-28, Sum P(4) = 2.9e-28
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1665 LQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1713

 Score = 47 (21.6 bits), Expect = 1.9e-66, Sum P(6) = 1.9e-66
 Identities = 36/136 (26%), Positives = 49/136 (36%)

Query:   206 RKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYN 265
             R  L     +T      CPHC     VV+K    K++   Y     KK    +D  AE  
Sbjct:   188 RSKLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTIT-YPAMVHKKSG-QKD--AELP 243

Query:   266 EAVKFNPEIEAHKKFGLIQTLNPLEVLQ-LFEAIPLEDIPLLLMNAELS--------KPS 316
             E     P I+   + G    L P    + LF     E   L  + + L          PS
Sbjct:   244 EGAPAAPGID-EAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 302

Query:   317 DLILTRLLVPPNCIRP 332
                L  ++VPP+  RP
Sbjct:   303 MFFLDFIVVPPSRYRP 318

 Score = 40 (19.1 bits), Expect = 2.7e-24, Sum P(4) = 2.7e-24
 Identities = 33/124 (26%), Positives = 49/124 (39%)

Query:   909 EEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTY--EVYKTLGIEAARST-IMTE 965
             +E++E  T  K+L   +NL      + VK V C S +      +KT  + A R     T 
Sbjct:   158 QEELEEYTS-KILQ--NNLLGSQGAH-VKNV-CESRSKLVAHFWKT-HMAAKRCPHCKTG 211

Query:   966 IKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSA 1025
               +V + H   +   +P +V      K   L  G P      +D+          PS SA
Sbjct:   212 RSVVRKEHNSKLTITYPAMVHKKSGQKDAELPEGAPAAPG--IDEAQMGKRGYLTPS-SA 268

Query:  1026 QEIL 1029
             QE L
Sbjct:   269 QEHL 272


>UNIPROTKB|B9ZVN9 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
            HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
            ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
            ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
        Length = 1659

 Score = 287 (106.1 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 88/278 (31%), Positives = 130/278 (46%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AHRA++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   544 NGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 603

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   604 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVI-WTGKQIFSLILKP 513
             R   M +    + D           I+K F    W     V T +I    +    L L  
Sbjct:   650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPL--WTGKQVVSTLLINIIPEDHIPLNLSG 707

Query:   514 NRDCPVNANLKTKGRAYTA-N-EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYI 571
                    A +K   R+    N +  C  +S VI+R  ELL G +DK+  GS     V + 
Sbjct:   708 KAKITGKAWVKETPRSVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGSSAYGLV-HC 764

Query:   572 LLRDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
                 +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDI 802

 Score = 199 (75.1 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   942 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1001

Query:   666 QYDMS 670
             QYD++
Sbjct:  1002 QYDLT 1006

 Score = 187 (70.9 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 56/172 (32%), Positives = 84/172 (48%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 1283
             L    VI   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1486 LAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1545

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1546 AIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSN 1604

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1605 SSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1656

 Score = 139 (54.0 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 44/127 (34%), Positives = 66/127 (51%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  EP  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1257

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT--VSGHSFLILKPKDS----SKSFNSKMYQ 1222
             + I+   + V + + +  ++R + +   LT    G     +  ++S     K    ++YQ
Sbjct:  1258 N-IKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQ 1316

Query:  1223 MK-QLLP 1228
             ++ Q LP
Sbjct:  1317 LRFQFLP 1323

 Score = 123 (48.4 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 32/108 (29%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + S+C GH G+I+LPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVI 117

 Score = 119 (46.9 bits), Expect = 8.4e-54, Sum P(6) = 8.4e-54
 Identities = 37/106 (34%), Positives = 54/106 (50%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 947
             L    VI   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1486 LAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1545

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1546 AIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1591

 Score = 84 (34.6 bits), Expect = 9.1e-61, Sum P(6) = 9.1e-61
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++   L+    L   + +K +L R  LGEV + I+
Sbjct:  1244 GIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKID 1298

 Score = 64 (27.6 bits), Expect = 3.2e-35, Sum P(5) = 3.2e-35
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R   M +
Sbjct:   610 VLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMEL 656

 Score = 56 (24.8 bits), Expect = 7.0e-28, Sum P(3) = 7.0e-28
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1608 LQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1656

 Score = 50 (22.7 bits), Expect = 1.1e-41, Sum P(6) = 1.1e-41
 Identities = 44/174 (25%), Positives = 71/174 (40%)

Query:   223 CPHCGEINGVVKK--CGLLKISHEKYKNRTK-KKDAIVEDLLAEYNEAVK--FNPEIEAH 277
             CPHC     VV+K     L I+     +RT  +KD+  E L  E  +  K  +     A 
Sbjct:   205 CPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS--EPLGIEEAQIGKRGYLTPTSAR 262

Query:   278 KKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP-SVIS 336
             +    +       +  LF    ++D     M +  + PS   L  L+VPP+  RP S + 
Sbjct:   263 EHLSALWKNEGFFLNYLFSG--MDDDG---MESRFN-PSVFFLDFLVVPPSRYRPVSRLG 316

Query:   337 DLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEM 390
             D    N   + N Q ++ K  ++  +   L  +  +  E V TP   D + D +
Sbjct:   317 DQMFTNGQTV-NLQ-AVMKDVVLIRKLLALMAQEQKLPEEVATP-TTDEEKDSL 367

 Score = 48 (22.0 bits), Expect = 2.0e-66, Sum P(6) = 2.0e-66
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             E RR Y  K  A    +L +W P  Y
Sbjct:  1130 ESRRKYQKKAAACPDPSLSVWRPDIY 1155

 Score = 39 (18.8 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 20/93 (21%), Positives = 39/93 (41%)

Query:   290 EVLQLFEA---IPLEDIPLLLMNAELSKPSDLI--LTRLLVPPNCIRPSVISDLKSDNDV 344
             E+L +  A    P+  +P+L     L +   L   LTR+     C+   V+  +      
Sbjct:  1250 EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRV-----CLG-EVLQKIDVQESF 1303

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECV 377
              +  +Q   +K  +   R + LPH  ++  +C+
Sbjct:  1304 CMEEKQ---NKFQVYQLRFQFLPHAYYQQEKCL 1333


>UNIPROTKB|O95602 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
            species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
            "nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
            polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
            initiation from RNA polymerase I promoter" evidence=TAS]
            [GO:0006362 "transcription elongation from RNA polymerase I
            promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
            I transcription" evidence=TAS] [GO:0010467 "gene expression"
            evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
            Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
            GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
            Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
            GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
            EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
            PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
            ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
            MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
            SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
            Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
            CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
            HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
            HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
            OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
            PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
            Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
        Length = 1720

 Score = 287 (106.1 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 88/278 (31%), Positives = 130/278 (46%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AHRA++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   544 NGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 603

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   604 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFT 649

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVI-WTGKQIFSLILKP 513
             R   M +    + D           I+K F    W     V T +I    +    L L  
Sbjct:   650 REHYMELVYRGLTDKVGRVKLLSPSILKPFPL--WTGKQVVSTLLINIIPEDHIPLNLSG 707

Query:   514 NRDCPVNANLKTKGRAYTA-N-EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYI 571
                    A +K   R+    N +  C  +S VI+R  ELL G +DK+  GS     V + 
Sbjct:   708 KAKITGKAWVKETPRSVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGSSAYGLV-HC 764

Query:   572 LLRDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
                 +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDI 802

 Score = 199 (75.1 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   942 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1001

Query:   666 QYDMS 670
             QYD++
Sbjct:  1002 QYDLT 1006

 Score = 187 (70.9 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 56/172 (32%), Positives = 84/172 (48%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 1283
             L    VI   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1547 LAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1606

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1607 AIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSN 1665

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1666 SSPLQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1717

 Score = 139 (54.0 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 44/127 (34%), Positives = 66/127 (51%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  EP  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1199 KWQRSLCEPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1257

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT--VSGHSFLILKPKDS----SKSFNSKMYQ 1222
             + I+   + V + + +  ++R + +   LT    G     +  ++S     K    ++YQ
Sbjct:  1258 N-IKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKIDVQESFCMEEKQNKFQVYQ 1316

Query:  1223 MK-QLLP 1228
             ++ Q LP
Sbjct:  1317 LRFQFLP 1323

 Score = 123 (48.4 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 32/108 (29%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + S+C GH G+I+LPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFSNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVI 117

 Score = 119 (46.9 bits), Expect = 1.1e-53, Sum P(6) = 1.1e-53
 Identities = 37/106 (34%), Positives = 54/106 (50%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 947
             L    VI   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1547 LAHGAVIYATKGITRCLLNETTNNKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1606

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1607 AIANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1652

 Score = 84 (34.6 bits), Expect = 1.2e-60, Sum P(6) = 1.2e-60
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++   L+    L   + +K +L R  LGEV + I+
Sbjct:  1244 GIPRLREILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRVCLGEVLQKID 1298

 Score = 64 (27.6 bits), Expect = 3.9e-35, Sum P(5) = 3.9e-35
 Identities = 13/47 (27%), Positives = 21/47 (44%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R   M +
Sbjct:   610 VLACTDQQYLVPKDGQPLAGLIQDHMVSGASMTTRGCFFTREHYMEL 656

 Score = 56 (24.8 bits), Expect = 8.1e-28, Sum P(3) = 8.1e-28
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1669 LQQMTFETSFQFLKQATMLGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1717

 Score = 50 (22.7 bits), Expect = 1.4e-41, Sum P(6) = 1.4e-41
 Identities = 44/174 (25%), Positives = 71/174 (40%)

Query:   223 CPHCGEINGVVKK--CGLLKISHEKYKNRTK-KKDAIVEDLLAEYNEAVK--FNPEIEAH 277
             CPHC     VV+K     L I+     +RT  +KD+  E L  E  +  K  +     A 
Sbjct:   205 CPHCKTGRSVVRKEHNSKLTITFPAMVHRTAGQKDS--EPLGIEEAQIGKRGYLTPTSAR 262

Query:   278 KKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP-SVIS 336
             +    +       +  LF    ++D     M +  + PS   L  L+VPP+  RP S + 
Sbjct:   263 EHLSALWKNEGFFLNYLFSG--MDDDG---MESRFN-PSVFFLDFLVVPPSRYRPVSRLG 316

Query:   337 DLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEM 390
             D    N   + N Q ++ K  ++  +   L  +  +  E V TP   D + D +
Sbjct:   317 DQMFTNGQTV-NLQ-AVMKDVVLIRKLLALMAQEQKLPEEVATP-TTDEEKDSL 367

 Score = 48 (22.0 bits), Expect = 2.7e-66, Sum P(6) = 2.7e-66
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             E RR Y  K  A    +L +W P  Y
Sbjct:  1130 ESRRKYQKKAAACPDPSLSVWRPDIY 1155

 Score = 39 (18.8 bits), Expect = 1.7e-15, Sum P(3) = 1.7e-15
 Identities = 20/93 (21%), Positives = 39/93 (41%)

Query:   290 EVLQLFEA---IPLEDIPLLLMNAELSKPSDLI--LTRLLVPPNCIRPSVISDLKSDNDV 344
             E+L +  A    P+  +P+L     L +   L   LTR+     C+   V+  +      
Sbjct:  1250 EILMVASANIKTPMMSVPVLNTKKALKRVKSLKKQLTRV-----CLG-EVLQKIDVQESF 1303

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECV 377
              +  +Q   +K  +   R + LPH  ++  +C+
Sbjct:  1304 CMEEKQ---NKFQVYQLRFQFLPHAYYQQEKCL 1333


>UNIPROTKB|E1BIX2 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9913
            "Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
            GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
            RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
            Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
            NextBio:20876927 Uniprot:E1BIX2
        Length = 1717

 Score = 292 (107.8 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 91/278 (32%), Positives = 131/278 (47%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AHRA+VLP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   544 NGDILLLNRQPTLHRPSIQAHRARVLPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 603

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FFN
Sbjct:   604 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFN 649

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVI-WTGKQIFSLILKP 513
             R Q M +    + D           I+K F    W     V T +I    +    L L  
Sbjct:   650 REQYMELVFRGLTDKVGRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDHIPLNLSG 707

Query:   514 NRDCPVNANLKTKGRAYTA-N-EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYI 571
                    A +K   R     N +  C  +S VI+R  ELL G +DK+  GS     V + 
Sbjct:   708 KAKIGGKAWVKESPRLVPGFNPDSMC--ESQVIIRAGELLCGVLDKAHYGSSAYGLV-HC 764

Query:   572 LLRDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
                 +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   765 CYEIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDI 802

 Score = 199 (75.1 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   942 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1001

Query:   666 QYDMS 670
             QYD++
Sbjct:  1002 QYDLT 1006

 Score = 185 (70.2 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 54/173 (31%), Positives = 87/173 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLV--EGDNLRDVMATYGVKGVK-CSSNNT 1282
             L    +I   +GI R +++E  +    + +L++  EG NL ++     V  ++   SN+ 
Sbjct:  1544 LAQGAIIYATKGITRCLLNET-INSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDI 1602

Query:  1283 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKM 1342
             + +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ + 
Sbjct:  1603 HAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RS 1661

Query:  1343 KESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
               S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1662 NSSPLQQMTFETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1714

 Score = 136 (52.9 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 45/130 (34%), Positives = 69/130 (53%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+ +  
Sbjct:  1199 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILM-VAS 1256

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT--VSGHSFLILKPKDSSKSF------NS-K 1219
               I+   + V + + +  +++ + +   LT    G    +L+  D  +SF      N  +
Sbjct:  1257 SNIKTPMMSVPVFNTKKALKKVKSLKKQLTRVCLGE---VLEKIDVQESFRIGEKQNKFR 1313

Query:  1220 MYQMK-QLLP 1228
             +YQ++ Q LP
Sbjct:  1314 VYQLRFQFLP 1323

 Score = 122 (48.0 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 32/108 (29%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSVNGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+IDLPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFTNCSGHLGHIDLPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVV 117

 Score = 117 (46.2 bits), Expect = 5.6e-54, Sum P(7) = 5.6e-54
 Identities = 35/107 (32%), Positives = 57/107 (53%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLV--EGDNLRDVMATYGVKGVK-CSSNNT 946
             L    +I   +GI R +++E  +    + +L++  EG NL ++     V  ++   SN+ 
Sbjct:  1544 LAQGAIIYATKGITRCLLNET-INSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDI 1602

Query:   947 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             + +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1603 HAMASTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649

 Score = 83 (34.3 bits), Expect = 7.3e-61, Sum P(7) = 7.3e-61
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV E I+
Sbjct:  1244 GIPRLREILMVASSNIKTPMMSVPVFNTKKALKKVKSLKKQLTRVCLGEVLEKID 1298

 Score = 72 (30.4 bits), Expect = 1.2e-34, Sum P(5) = 1.2e-34
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FFNR Q M +
Sbjct:   610 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFNREQYMEL 656

 Score = 56 (24.8 bits), Expect = 1.2e-28, Sum P(4) = 1.2e-28
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1666 LQQMTFETSFQFLKQATLMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1714

 Score = 53 (23.7 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 34/131 (25%), Positives = 55/131 (41%)

Query:   210 KKKILETTKKVSV----CPHCGEINGVVKK--CGLLKISHEKYKNR-TKKKDAIVEDLL- 261
             K K++    KV +    CPHC     VV+K     L I++    +R   +KD+  + +  
Sbjct:   188 KSKLISVFWKVHMTAKRCPHCKTGRSVVRKEHNSKLTITYPAMVHRRADQKDSEPQGIEE 247

Query:   262 AEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILT 321
             A+  +     P         L +      +  LF  + LED+    M +  + PS   L 
Sbjct:   248 AQMGKRGYLTPSSAQEHLIALWKN-EGFFLNYLF--LGLEDVG---MESRFN-PSMFFLD 300

Query:   322 RLLVPPNCIRP 332
              L+VPP+  RP
Sbjct:   301 FLVVPPSRYRP 311

 Score = 40 (19.1 bits), Expect = 2.8e-66, Sum P(7) = 2.8e-66
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             + RR Y  K       +L +W P  Y
Sbjct:  1130 QSRRKYQKKAAPCPDPSLSVWRPDIY 1155


>UNIPROTKB|G4NBX7 [details] [associations]
            symbol:MGG_01158 "DNA-directed RNA polymerase"
            species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
            development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
            KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
            ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
            KEGG:mgr:MGG_01158 Uniprot:G4NBX7
        Length = 1719

 Score = 220 (82.5 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 43/67 (64%), Positives = 49/67 (73%)

Query:   340 SDNDVVLFNRQPSLHKLSIMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTE 398
             S+ DVVL NRQP+LHK SIM HR +VLP  +T R +   C  YNADFDGDEMN+H PQ E
Sbjct:   598 SNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKTIRMHYANCNTYNADFDGDEMNMHFPQNE 657

Query:   399 EARAEAL 405
              AR EAL
Sbjct:   658 VARTEAL 664

 Score = 188 (71.2 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 51/143 (35%), Positives = 72/143 (50%)

Query:  1260 GDNLRDVMATYG--VKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRH 1317
             G NLR  M  YG  +   + S+N+   V +  G+EA R+ I+ E++ V E+H +++D RH
Sbjct:  1571 GSNLR-AMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRH 1629

Query:  1318 PMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSEC 1377
               L+AD MT  G      R GL+    S     SFE T   L DA   G  D +S  S  
Sbjct:  1630 LNLIADHMTRSGGFTPFNRMGLSG-NVSPFTKMSFETTLAFLKDAVLDGDWDDLSTPSGR 1688

Query:  1378 IIMGLPMNVGTGLIKLLQAVPRS 1400
             ++MG   +VGTG   +    P S
Sbjct:  1689 LVMGRLGHVGTGAFDVFTQAPMS 1711

 Score = 183 (69.5 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 33/64 (51%), Positives = 47/64 (73%)

Query:   607 DVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             D+  G G++ N F +G+ P E++FH M GREGL+DTAVKT+ +GY+QR L+K +E L + 
Sbjct:   993 DIRAG-GYIVNRFLTGIRPQEYYFHHMAGREGLIDTAVKTSRSGYLQRCLIKGMEGLEIG 1051

Query:   667 YDMS 670
             YD S
Sbjct:  1052 YDNS 1055

 Score = 127 (49.8 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             KY+R+ + P  AVG +A QS+GEP TQMTL TFH AG
Sbjct:  1203 KYMRSLVHPGEAVGIVAGQSVGEPSTQMTLNTFHLAG 1239

 Score = 126 (49.4 bits), Expect = 6.8e-52, Sum P(8) = 6.8e-52
 Identities = 28/72 (38%), Positives = 43/72 (59%)

Query:   924 GDNLRDVMATYG--VKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRH 981
             G NLR  M  YG  +   + S+N+   V +  G+EA R+ I+ E++ V E+H +++D RH
Sbjct:  1571 GSNLR-AMQQYGSFINPNRISTNDVAAVLEIYGVEACRANIIRELRAVFESHAITVDNRH 1629

Query:   982 PMLVADLMTSKG 993
               L+AD MT  G
Sbjct:  1630 LNLIADHMTRSG 1641

 Score = 123 (48.4 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 25/65 (38%), Positives = 37/65 (56%)

Query:   110 DPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINI 169
             D    P+P GL D  +G    ++ C TC    S C GH G+I+LP+PV+H  +   V+ +
Sbjct:    39 DTLLNPVPGGLYDPALGA-WGDSVCATCNLGPSACPGHPGHIELPVPVYHPVFMDQVLRL 97

Query:   170 LQSIC 174
             L+S C
Sbjct:    98 LRSQC 102

 Score = 123 (48.4 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 47/190 (24%), Positives = 87/190 (45%)

Query:   429 VTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRS 488
             ++   G+ L    QD ++    L  K+ + +R+    +    +   S   G I R     
Sbjct:   674 ISGTQGKPLRGLIQDHLSVSVALCNKDTYLDRSAYHELVYNALRPES---GHILRERIEL 730

Query:   489 WNPVVFVRTAVIWTGKQIFSLILKPNR--DCPVNANLKTKGRAYT-ANEEFCH-RDSYVI 544
               P + ++    WTGKQ+ + +L+  R  DC    +L   G+    A+    H  +  V+
Sbjct:   731 VPPAI-IKPKARWTGKQVITTVLRNIRPLDC---GDLWMTGKTQVPAHAWGVHSEEGQVL 786

Query:   545 LRNSELLAGSMDKSTLG--SGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFS 602
              R+ E ++G +DK+ LG  SGG  +  + +   +G  +A   +  + R+ + YL  R F+
Sbjct:   787 FRDGEFISGILDKAQLGPSSGGLVHAVHEV---YGPAIAGKLLSAMGRLLTRYLNMRAFT 843

Query:   603 IGIGDV--TP 610
              G+ D+  TP
Sbjct:   844 CGMDDLKLTP 853

 Score = 63 (27.2 bits), Expect = 1.5e-49, Sum P(8) = 1.5e-49
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query:   393 HLPQTEEARAEALPSLHKLSIMAHRAKVLMANKS 426
             H+   +       P+LHK SIM HR +VL   K+
Sbjct:   596 HISNGDVVLMNRQPTLHKPSIMGHRVRVLPGEKT 629

 Score = 62 (26.9 bits), Expect = 3.5e-58, Sum P(8) = 3.5e-58
 Identities = 12/28 (42%), Positives = 21/28 (75%)

Query:   764 GVPRIKEII-NASRNISTPIITAYLDKD 790
             G+PR++E++  AS  ISTP +T  L+++
Sbjct:  1248 GIPRLRELLMTASSKISTPSMTLILNEE 1275

 Score = 56 (24.8 bits), Expect = 4.4e-65, Sum P(7) = 4.4e-65
 Identities = 18/81 (22%), Positives = 37/81 (45%)

Query:   175 KNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVK 234
             +N    +VL   + + G   K ++   S + R+ L K+ L+   K  +C  C  ++   +
Sbjct:   176 RNAYVRQVLQQHQISLGEIRKGKHEGASEM-RRDLVKQFLQDMTKSRICASCDGVSPTYR 234

Query:   235 KCGLLKISHEKYKNRTKKKDA 255
             K   +KI  +   ++ + K A
Sbjct:   235 KDRFVKIFEKPLSSKDQGKMA 255

 Score = 53 (23.7 bits), Expect = 6.8e-37, Sum P(7) = 6.8e-37
 Identities = 23/88 (26%), Positives = 39/88 (44%)

Query:   518 PVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFG 577
             PV++ L     AY  +E+F    S  +  N + L    D     SG +++    L R   
Sbjct:  1137 PVSSMLNPTRYAYATSEKFFDAMSSYVKENPDALIKEKDDKLRNSGPQSSSIVRLNRKAA 1196

Query:   578 EDVAVTAMWRLSRMTSFYLMNRGFSIGI 605
             E V ++A +  S      L++ G ++GI
Sbjct:  1197 EKV-LSAKYMRS------LVHPGEAVGI 1217

 Score = 52 (23.4 bits), Expect = 7.9e-43, Sum P(6) = 7.9e-43
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS 711
             DA   G  D +S  S  ++MG   +VGTG   +    P S
Sbjct:  1672 DAVLDGDWDDLSTPSGRLVMGRLGHVGTGAFDVFTQAPMS 1711

 Score = 49 (22.3 bits), Expect = 1.5e-49, Sum P(8) = 1.5e-49
 Identities = 30/120 (25%), Positives = 51/120 (42%)

Query:   253 KDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPL-----EDIPLLL 307
             ++++  D L E    VK  P+ +  KK G   +   L   ++ E + L     +++  L 
Sbjct:   296 EESVDGDDLDEQGNVVKL-PKSKP-KKSGAAPSQRYLSAREVLERLDLLFEKEQEVLSLF 353

Query:   308 MNAELSKPSD-------LILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMA 360
              N++ S  S          +  LLVPPN  RP   +     N+     +Q SL+K  + A
Sbjct:   354 YNSKPSHKSTKHINAGLFFVQTLLVPPNRFRPEARTGDSQINEA----QQNSLYKAILKA 409

 Score = 41 (19.5 bits), Expect = 1.1e-38, Sum P(6) = 1.1e-38
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query:   306 LLMNAELSKPSDLILTRL-LVPPNCIRPSVISDLKSDNDVVLFNRQP 351
             L+ NA   +   ++  R+ LVPP  I+P      K     VL N +P
Sbjct:   711 LVYNALRPESGHILRERIELVPPAIIKPKARWTGKQVITTVLRNIRP 757

 Score = 40 (19.1 bits), Expect = 3.5e-58, Sum P(8) = 3.5e-58
 Identities = 10/38 (26%), Positives = 19/38 (50%)

Query:   799 VKGRLERTTLGEVCEYIEEVFVPDDSFILIKLDMDRIR 836
             ++ R + T+ GE CE   E  +     +++ L  D +R
Sbjct:  1496 IRFRCDETS-GEWCEITLEYDIGIPKILMLSLVQDAVR 1532

 Score = 40 (19.1 bits), Expect = 1.4e-46, Sum P(7) = 1.4e-46
 Identities = 11/32 (34%), Positives = 19/32 (59%)

Query:   386 DGDEMN-----VHLPQTEEARAEALPSLHKLS 412
             DGD+++     V LP+++  ++ A PS   LS
Sbjct:   300 DGDDLDEQGNVVKLPKSKPKKSGAAPSQRYLS 331

 Score = 37 (18.1 bits), Expect = 8.2e-42, Sum P(6) = 8.2e-42
 Identities = 8/34 (23%), Positives = 16/34 (47%)

Query:  1094 SNPFPSACKAEACREKYVRAQIEPATAVGALAAQ 1127
             S    +AC  +   +++ + Q++  T  GA   Q
Sbjct:   922 SQDITTACLPKGLEKQFPKNQMQAMTISGAKGGQ 955


>MGI|MGI:1096397 [details] [associations]
            symbol:Polr1a "polymerase (RNA) I polypeptide A"
            species:10090 "Mus musculus" [GO:0003677 "DNA binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
            [GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
            ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
            CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
            HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
            EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
            UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
            STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
            Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
            UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
            NextBio:297531 Bgee:O35134 Genevestigator:O35134
            GermOnline:ENSMUSG00000049553 Uniprot:O35134
        Length = 1717

 Score = 294 (108.6 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 88/276 (31%), Positives = 131/276 (47%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AHRA++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   551 NGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 610

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   611 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 656

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVIWTGKQIFS-LILKP 513
             R Q M +    + D           I+K F    W     V T +I    + ++ L L  
Sbjct:   657 REQYMELVYRGLTDKVGRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDYAPLNLSG 714

Query:   514 NRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILL 573
                    A +K K R     +     +S VI+R  ELL G +DK+  GS     V +   
Sbjct:   715 KAKIGSKAWVKEKPRPIPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLV-HCCY 773

Query:   574 RDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
               +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   774 EIYGGETSGRVLTCLARLFTAYLQLYRGFTLGVEDI 809

 Score = 198 (74.8 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 37/65 (56%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L +
Sbjct:   949 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVI 1008

Query:   666 QYDMS 670
             QYD++
Sbjct:  1009 QYDLT 1013

 Score = 183 (69.5 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 56/181 (30%), Positives = 89/181 (49%)

Query:  1221 YQMKQLLPSVVIKGV----QGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV 1275
             + M  L+ S+  K +    +GI R +++E       K  +L  EG NL ++     +  +
Sbjct:  1535 FDMSSLVVSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDL 1594

Query:  1276 K-CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGI 1334
             +   SN+ + +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    +
Sbjct:  1595 RRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPL 1654

Query:  1335 TRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
              R G+ +   S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L 
Sbjct:  1655 NRFGI-QSSSSPLQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELK 1713

Query:  1395 Q 1395
             Q
Sbjct:  1714 Q 1714

 Score = 132 (51.5 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 34/90 (37%), Positives = 50/90 (55%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1206 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1264

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT 1198
             + I+   + V +   +  +++ + +   LT
Sbjct:  1265 N-IKTPMMSVPVFDTKKALKKVKSLKKRLT 1293

 Score = 115 (45.5 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 25/73 (34%), Positives = 39/73 (53%)

Query:   115 PIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSIC 174
             P  +GL D  +G    +  C TC Q+ ++C GH G+IDLPL V++   F  +  +L+  C
Sbjct:    45 PSANGLYDLALGPADSKEVCATCVQDFNNCSGHLGHIDLPLTVYNPFLFDKLYLLLRGSC 104

Query:   175 KNP---TCARVLL 184
              +    TC R  +
Sbjct:   105 LSCHMLTCPRAAI 117

 Score = 115 (45.5 bits), Expect = 2.6e-53, Sum P(6) = 2.6e-53
 Identities = 37/115 (32%), Positives = 59/115 (51%)

Query:   885 YQMKQLLPSVVIKGV----QGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV 939
             + M  L+ S+  K +    +GI R +++E       K  +L  EG NL ++     +  +
Sbjct:  1535 FDMSSLVVSLAHKAIVYTTKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYSEILDL 1594

Query:   940 K-CSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             +   SN+ + +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1595 RRLYSNDIHAMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1649

 Score = 88 (36.0 bits), Expect = 2.8e-60, Sum P(6) = 2.8e-60
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    D    L   + +K RL R  LGEV + ++
Sbjct:  1251 GIPRLREILMVASANIKTPMMSVPVFDTKKALKKVKSLKKRLTRVCLGEVLQKVD 1305

 Score = 66 (28.3 bits), Expect = 4.7e-34, Sum P(4) = 4.7e-34
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   617 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 663

 Score = 57 (25.1 bits), Expect = 1.5e-27, Sum P(4) = 1.5e-27
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1666 LQQMTFETSFQFLKQATMMGSHDELKSPSACLVVGKVVKGGTGLFELKQ 1714

 Score = 46 (21.3 bits), Expect = 8.4e-65, Sum P(6) = 8.4e-65
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query:   206 RKSLKKKILETTKKVSVCPHCGEINGVVKK 235
             R  L  +  +T      CPHC     VV+K
Sbjct:   188 RSKLVAQFWKTHMAAKQCPHCKTGRSVVRK 217

 Score = 44 (20.5 bits), Expect = 3.0e-23, Sum P(4) = 3.0e-23
 Identities = 28/120 (23%), Positives = 50/120 (41%)

Query:   884 MYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSS 943
             +Y+++++L   + +   G   A   +E++E  T  K+L   +NL     T+ VK V C S
Sbjct:   135 VYELERILSRFLEE--TGDPSAFEIQEELEEYTS-KILQ--NNLLGSQGTH-VKNV-CES 187

Query:   944 NNTY--EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTP 1001
              +    + +KT           T   +V + H   +   +P  V      +G  L  G P
Sbjct:   188 RSKLVAQFWKTHMAAKQCPHCKTGRSVVRKEHNSKLIITYPATVHKKSDQEGTELPEGVP 247


>UNIPROTKB|F1SVC3 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
            OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
        Length = 1723

 Score = 286 (105.7 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 87/275 (31%), Positives = 128/275 (46%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AHRA++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   548 NGDILLLNRQPTLHRPSIQAHRARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 607

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   608 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 653

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPN 514
             R Q M +    + D           I+K F   +   VV      I    QI  L L   
Sbjct:   654 REQYMELVYRGLTDKVGRVKLFPPAILKPFPLWTGKQVVSTLLINIIPEDQI-PLNLLGK 712

Query:   515 RDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLR 574
                   A +K   R           +S V++R+ ELL G +DK+  GS     V +    
Sbjct:   713 AKIGGKAWVKEAPRPVPGFNPNLMCESQVVIRDGELLCGVLDKAHYGSSAYGLV-HCCYE 771

Query:   575 DFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
              +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   772 IYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDI 806

 Score = 199 (75.1 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   946 EFTPRAGGFVTGRFLTGIRPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1005

Query:   666 QYDMS 670
             QYD++
Sbjct:  1006 QYDLT 1010

 Score = 185 (70.2 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 55/172 (31%), Positives = 84/172 (48%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 1283
             L    V+   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1550 LAQGTVVYATKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1609

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1610 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSN 1668

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1669 SSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1720

 Score = 139 (54.0 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 45/130 (34%), Positives = 69/130 (53%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1203 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1261

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT--VSGHSFLILKPKDSSKSFNS-------K 1219
             + I+   + V + + R  +++ + +   LT    G    +L+  D  +SF+        +
Sbjct:  1262 N-IKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGE---VLEKIDVQESFSMGEKQAKFR 1317

Query:  1220 MYQMK-QLLP 1228
             +YQ++ Q LP
Sbjct:  1318 VYQLRFQFLP 1327

 Score = 120 (47.3 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 31/108 (28%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPPDSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+I+LPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFNNCPGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVI 117

 Score = 117 (46.2 bits), Expect = 5.4e-52, Sum P(7) = 5.4e-52
 Identities = 36/106 (33%), Positives = 54/106 (50%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGVK-CSSNNTY 947
             L    V+   +GI R +++E       K  +L  EG NL ++     V  ++   SN+ +
Sbjct:  1550 LAQGTVVYATKGITRCLLNETTNSKNEKELVLNTEGINLPELFKYAEVLDLRRLYSNDIH 1609

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              +  T GIEAA   I  EIK V   +G+++D RH  LVAD M  +G
Sbjct:  1610 AMANTYGIEAALRVIEKEIKDVFAVYGIAVDPRHLSLVADYMCFEG 1655

 Score = 82 (33.9 bits), Expect = 7.2e-59, Sum P(7) = 7.2e-59
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV E I+
Sbjct:  1248 GIPRLREILMVASANIKTPMMSVPVFNTRRALKKVKSLKKQLTRVCLGEVLEKID 1302

 Score = 66 (28.3 bits), Expect = 2.6e-34, Sum P(5) = 2.6e-34
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   614 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 660

 Score = 56 (24.8 bits), Expect = 8.7e-27, Sum P(4) = 8.7e-27
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1672 LQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVRGGTGLFELKQ 1720

 Score = 43 (20.2 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 29/115 (25%), Positives = 44/115 (38%)

Query:   223 CPHCGEINGVVKK--CGLLKISHEKYKNR-TKKKDAIVEDLLAEYNEAVK--FNPEIEAH 277
             CPHC     VV+K     L I++    +R   +KDA  +    E  +  K  +   + A 
Sbjct:   205 CPHCRTGRSVVRKEHNSKLTITYPAMVHRKADQKDAEPQAPGIEEAQMGKRGYLTPLSAQ 264

Query:   278 KKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP 332
                  +           +  + LED+ L         PS   L  L+VPP+  RP
Sbjct:   265 DHLIALWKNEDTGFFLNYLFLGLEDVGL----ESRFNPSMFFLDFLVVPPSRYRP 315

 Score = 40 (19.1 bits), Expect = 1.1e-64, Sum P(7) = 1.1e-64
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             + RR Y  K       +L +W P  Y
Sbjct:  1134 QSRRKYQKKAAPCPDPSLSVWRPDIY 1159

 Score = 37 (18.1 bits), Expect = 6.0e-39, Sum P(6) = 6.0e-39
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query:   393 HLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLI 438
             H+    E+R++ + S  K  + A R       +S +    N +L I
Sbjct:   180 HVKNVCESRSKLIASFWKAHMTAKRCPHCRTGRSVVRKEHNSKLTI 225


>SGD|S000005868 [details] [associations]
            symbol:RPA190 "RNA polymerase I largest subunit A190"
            species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            [GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0042790 "transcription of nuclear large rRNA transcript from
            RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
            GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
            EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
            eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
            EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
            RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
            DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
            PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
            GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
            NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
            Uniprot:P10964
        Length = 1664

 Score = 246 (91.7 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 64/163 (39%), Positives = 87/163 (53%)

Query:   303 IPLLLMNAELSKP--SDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMA 360
             + L+ M+ E  K   + L+     V  + +   V   +K+  DVVL NRQP+LHK S+M 
Sbjct:   544 VSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKN-RDVVLMNRQPTLHKASMMG 602

Query:   361 HRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAK 419
             H+ +VLP+ +T R +      YNADFDGDEMN+H PQ E ARAEAL              
Sbjct:   603 HKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALN------------- 649

Query:   420 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQ 462
              L    S  +TP +G  +    QD I+ G  LT K++FF R Q
Sbjct:   650 -LANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQ 691

 Score = 227 (85.0 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 61/181 (33%), Positives = 94/181 (51%)

Query:  1223 MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLR---DVMATYGVKGVKCSS 1279
             ++++    +I+ +  I+R V H E   G  K  L+ EG N +   D  A   V G+  +S
Sbjct:  1489 VEEICRKSIIRQIPHIDRCV-HPEPENG--KRVLVTEGVNFQAMWDQEAFIDVDGI--TS 1543

Query:  1280 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGL 1339
             N+   V KT G+EAAR+TI+ EI  V   + +S+ FRH  L+AD+MT +G  L   R G+
Sbjct:  1544 NDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYLAFNRQGM 1603

Query:  1340 AKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPR 1399
                  S + + S+E T   L  A    + + +   S  I++G   NVGTG   +L  VP 
Sbjct:  1604 ETSTSSFMKM-SYETTCQFLTKAVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVPN 1662

Query:  1400 S 1400
             +
Sbjct:  1663 A 1663

 Score = 186 (70.5 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 37/68 (54%), Positives = 48/68 (70%)

Query:   607 DVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             D   G G+V+  F+SG+ P E++FH M GREGL+DTAVKT+ +GY+QR L K LE + V 
Sbjct:   975 DAMAG-GYVKGRFYSGIKPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLTKQLEGVHVS 1033

Query:   667 YDMSF-DA 673
             YD S  DA
Sbjct:  1034 YDNSIRDA 1041

 Score = 172 (65.6 bits), Expect = 1.4e-42, Sum P(5) = 1.4e-42
 Identities = 74/282 (26%), Positives = 125/282 (44%)

Query:   417 RAKVL-MANK-SNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADT 474
             RA+ L +AN  S  +TP +G  +    QD I+ G  LT K++FF R Q  +     I   
Sbjct:   644 RAEALNLANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPE 703

Query:   475 SDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILK--PNRDCPVNANLKTKGRAYTA 532
                 G   R    +  P +F +   +WTGKQI + +L      D P   NL +K +    
Sbjct:   704 D---GHTTRSKIVTLPPTIF-KPYPLWTGKQIITTVLLNVTPPDMP-GINLISKNKIKNE 758

Query:   533 NEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMT 592
                    ++ V+ ++  LL G +DKS  G+  K  + + L   +G +VA   +  L R+ 
Sbjct:   759 YWGKGSLENEVLFKDGALLCGILDKSQYGAS-KYGIVHSLHEVYGPEVAAKVLSVLGRLF 817

Query:   593 SFYLMNRGFSIGIGDVT-PGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGY 651
             + Y+    F+ G+ D+    +G   N + + +  T     T  GRE   +      +T  
Sbjct:   818 TNYITATAFTCGMDDLRLTAEG---NKWRTDILKTSV--DT--GREAAAEVTNLDKDTPA 870

Query:   652 MQRRLVKSLEDLCVQYDMS--FDAAFYGQTDCISG--VSECI 689
                 L+K L+++    + S   DA    + + I+   VS+C+
Sbjct:   871 DDPELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCV 912

 Score = 157 (60.3 bits), Expect = 3.7e-49, Sum P(6) = 3.7e-49
 Identities = 42/113 (37%), Positives = 64/113 (56%)

Query:   887 MKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLR---DVMATYGVKGVKCSS 943
             ++++    +I+ +  I+R V H E   G  K  L+ EG N +   D  A   V G+  +S
Sbjct:  1489 VEEICRKSIIRQIPHIDRCV-HPEPENG--KRVLVTEGVNFQAMWDQEAFIDVDGI--TS 1543

Query:   944 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL 996
             N+   V KT G+EAAR+TI+ EI  V   + +S+ FRH  L+AD+MT +G  L
Sbjct:  1544 NDVAAVLKTYGVEAARNTIVNEINNVFSRYAISVSFRHLDLIADMMTRQGTYL 1596

 Score = 143 (55.4 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 33/74 (44%), Positives = 47/74 (63%)

Query:  1073 VSQPLREQILSHQDKIGHGRESNPFPSACKAEACRE-KYVRAQIEPATAVGALAAQSIGE 1131
             VS+  ++++ S  DK     +S+   +  K  A  + KY+R+ I P  AVG +A+QS+GE
Sbjct:  1136 VSENFQDKLESFLDKNSKLFKSSDGVNEKKFRALMQLKYMRSLINPGEAVGIIASQSVGE 1195

Query:  1132 PGTQMTLKTFHFAG 1145
             P TQMTL TFHFAG
Sbjct:  1196 PSTQMTLNTFHFAG 1209

 Score = 106 (42.4 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 36/127 (28%), Positives = 61/127 (48%)

Query:    85 GTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDC 144
             G +T ++ ++  S  QI +  +   D    P+  GL D  +G   +   C+TCG +   C
Sbjct:    17 GILTAKE-IRNLSAKQITNPTVL--DNLGHPVSGGLYDLALGAFLRNL-CSTCGLDEKFC 72

Query:   145 VGHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSY- 203
              GH G+I+LP+P ++  +F  +   L++ C    C    L   +   +  KLR   L Y 
Sbjct:    73 PGHQGHIELPVPCYNPLFFNQLYIYLRASCL--FCHHFRLKSVEVHRYACKLR--LLQYG 128

Query:   204 LVRKSLK 210
             L+ +S K
Sbjct:   129 LIDESYK 135

 Score = 72 (30.4 bits), Expect = 2.9e-39, Sum P(4) = 2.9e-39
 Identities = 17/42 (40%), Positives = 24/42 (57%)

Query:    23 MANK-SNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQ 63
             +AN  S  +TP +G  +    QD I+ G  LT K++FF R Q
Sbjct:   650 LANTDSQYLTPTSGSPVRGLIQDHISAGVWLTSKDSFFTREQ 691

 Score = 62 (26.9 bits), Expect = 5.5e-56, Sum P(7) = 5.5e-56
 Identities = 19/60 (31%), Positives = 31/60 (51%)

Query:   764 GVPRIKEII-NASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPD 822
             G+PR++EI+  AS  I TP +T  +  D   + A      + +  L EV   I++V V +
Sbjct:  1218 GIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTFCKSISKVLLSEV---IDKVIVTE 1274

 Score = 60 (26.2 bits), Expect = 1.3e-64, Sum P(6) = 1.3e-64
 Identities = 22/79 (27%), Positives = 35/79 (44%)

Query:   205 VRKSLKKKILETTKKV---SVCPHCGEINGVVKKCGLLKIS----HEKYKNRTKKKDAIV 257
             V    KK + E  KK+     C +CG  +   +K G  KI     +EK     + K  I 
Sbjct:   212 VNDERKKLVHEFHKKLLSRGKCDNCGMFSPKFRKDGFTKIFETALNEKQITNNRVKGFIR 271

Query:   258 EDLLAEYNEAVKFNPEIEA 276
             +D++ +  +A K +   EA
Sbjct:   272 QDMIKKQKQAKKLDGSNEA 290

 Score = 47 (21.6 bits), Expect = 3.0e-36, Sum P(5) = 3.0e-36
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRS 711
             A    + + +   S  I++G   NVGTG   +L  VP +
Sbjct:  1625 AVLDNEREQLDSPSARIVVGKLNNVGTGSFDVLAKVPNA 1663

 Score = 41 (19.5 bits), Expect = 5.5e-56, Sum P(7) = 5.5e-56
 Identities = 27/134 (20%), Positives = 49/134 (36%)

Query:   955 IEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLM--TSKGEVLGNGTPVELK-RLLDDI 1011
             I    + I+ EIK      G  I    P L  D+   +S  + L      E   +     
Sbjct:  1322 IHLLEAAIVKEIKKQKRTTGPDIGVAVPRLQTDVANSSSNSKRLEEDNDEEQSHKKTKQA 1381

Query:  1012 IAKNSSRSDPSLSAQEILALSNET-LDSKEFLQDTSENFVRDIXXXXXXXXXXXXVTSHQ 1070
             ++ +    D   + +E    S+E  +DS +     SE+   D+              ++ 
Sbjct:  1382 VSYDEPDEDEIETMREAEKSSDEEGIDSDKESDSDSED--EDVDMNEQINKSIVEANNNM 1439

Query:  1071 DKVSQPLREQILSH 1084
             +KV +  +  I+SH
Sbjct:  1440 NKVQRDRQSAIISH 1453

 Score = 39 (18.8 bits), Expect = 1.4e-49, Sum P(6) = 1.4e-49
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query:   768 IKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLE 804
             +K  ++  R  +  +    LDKDT  D   ++K RL+
Sbjct:   847 LKTSVDTGREAAAEVTN--LDKDTPADDPELLK-RLQ 880


>UNIPROTKB|J9P5G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
            CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
            KEGG:cfa:475766 Uniprot:J9P5G4
        Length = 1717

 Score = 279 (103.3 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 87/278 (31%), Positives = 129/278 (46%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AH A++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   544 NGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 603

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   604 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 649

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVI-WTGKQIFSLILKP 513
             R Q M +    + D           I+K F    W     V T +I    +    L L  
Sbjct:   650 REQYMELLYRGLTDKVGRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDHIPLSLSG 707

Query:   514 NRDCPVNANLKTKGRAYTA-N-EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYI 571
                    A ++   R     N +  C  +S VI+R  ELL G +DK+  GS     V + 
Sbjct:   708 KAKISGKAWVQESPRPVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGSSAYGLV-HC 764

Query:   572 LLRDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
                 +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   765 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDI 802

 Score = 199 (75.1 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   942 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1001

Query:   666 QYDMS 670
             QYD++
Sbjct:  1002 QYDLT 1006

 Score = 187 (70.9 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 55/172 (31%), Positives = 86/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 1283
             L  S V+   +GI R +++E   +   K  +L  EG NL ++     V  + +  SN+ +
Sbjct:  1544 LAQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIH 1603

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              +  T GIEAA   I  EI+ V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1604 AMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSN 1662

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1663 SSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1714

 Score = 136 (52.9 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1199 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1257

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT 1198
             + I+   + V + + +  ++R + +   LT
Sbjct:  1258 N-IKTPMMSVPVFNTKKALKRVKSLKKQLT 1286

 Score = 120 (47.3 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 31/108 (28%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+I+LPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVI 117

 Score = 119 (46.9 bits), Expect = 5.8e-52, Sum P(7) = 5.8e-52
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 947
             L  S V+   +GI R +++E   +   K  +L  EG NL ++     V  + +  SN+ +
Sbjct:  1544 LAQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIH 1603

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              +  T GIEAA   I  EI+ V   +G+++D RH  LVAD M  +G
Sbjct:  1604 AMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEG 1649

 Score = 83 (34.3 bits), Expect = 7.7e-59, Sum P(7) = 7.7e-59
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV E I+
Sbjct:  1244 GIPRLREILMVASANIKTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKID 1298

 Score = 66 (28.3 bits), Expect = 4.0e-34, Sum P(5) = 4.0e-34
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   610 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 656

 Score = 56 (24.8 bits), Expect = 1.5e-26, Sum P(4) = 1.5e-26
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1666 LQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1714

 Score = 48 (22.0 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 31/113 (27%), Positives = 44/113 (38%)

Query:   223 CPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAI-VEDLLAEYNEAVK--FNPEIEAHKK 279
             CPHC     VV+K    K++        KK D    E L  E  +  K  +     A + 
Sbjct:   205 CPHCKTGRSVVRKEHNSKLTVTYPAMVHKKADQKDTEPLGIEETQLGKRGYLTPTSAREH 264

Query:   280 FGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP 332
                +       +  LF    LED+    M +  + PS   L  L+VPP+  RP
Sbjct:   265 LTALWKNEGFFLNYLFSG--LEDVD---MESRFN-PSVFFLDFLVVPPSRYRP 311

 Score = 39 (18.8 bits), Expect = 3.0e-64, Sum P(7) = 3.0e-64
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             + RR Y  K       +L +W P  Y
Sbjct:  1130 QSRRKYQKKAAPCPDPSLAVWRPDIY 1155


>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
            symbol:polr1a "polymerase (RNA) I polypeptide A"
            species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
            [GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
            EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
            ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
        Length = 1710

 Score = 277 (102.6 bits), Expect = 4.7e-64, Sum P(5) = 4.7e-64
 Identities = 92/326 (28%), Positives = 149/326 (45%)

Query:   301 EDIPLLLMNAELSKPSDLILTRLLVPP---NCIRPSVISDLKSDNDVVLFNRQPSLHKLS 357
             ED    ++++      + +  +LL P    + I   +++    + DV+L NRQP+LH+ S
Sbjct:   506 EDGSRTILSSTNQTQREAVAKQLLTPSTGQHRIPMKIVNRHIKNGDVLLLNRQPTLHRPS 565

Query:   358 IMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAH 416
             I AH A++LP  +  R +   C  YNADFDGDEMN H PQ+E +RAEA            
Sbjct:   566 IQAHCARILPGEKVLRLHYANCKAYNADFDGDEMNAHFPQSELSRAEAY----------- 614

Query:   417 RAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSD 476
                 L++     + P++G+ L    QD +  G  +T +  FF R Q   +    + D   
Sbjct:   615 ---TLVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQYTALVYRGLTDKIG 671

Query:   477 ICGIIKRFSWRS---WNPVVFVRTAVIWT-GKQIFSLILKPNRDCPVNANLKTKGRAYTA 532
                ++     +    W     V T ++    +    L L      P  A +K   R    
Sbjct:   672 RVKLLPPTLIKPVLLWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAWVKESPRPVPG 731

Query:   533 N--EEFCHRDSYVILRNSELLAGSMDKSTLGSG--GKANVFYILLRDFGEDVAVTAMWRL 588
                E  C  +S V++R  ELL G +DK+  GS   G  +  Y L   +G + +   +  L
Sbjct:   732 YVPESMC--ESQVVIRQGELLMGVLDKAHYGSSAYGLVHCCYEL---YGGETSGKLLSCL 786

Query:   589 SRMTSFYL-MNRGFSIGIGDVTPGQG 613
             +R+ + YL + RGF++G+ D+    G
Sbjct:   787 ARLFTAYLQLYRGFTLGVEDILVKDG 812

 Score = 196 (74.1 bits), Expect = 4.7e-64, Sum P(5) = 4.7e-64
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
             GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L VQYD++
Sbjct:   945 GFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCVIKHLEGLVVQYDLT 1002

 Score = 188 (71.2 bits), Expect = 4.7e-64, Sum P(5) = 4.7e-64
 Identities = 54/175 (30%), Positives = 87/175 (49%)

Query:  1223 MKQLLPSVVIKGVQGINRAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSN 1280
             +KQ   +V+++  +GI R +++E    +G  +  L  EG N+ ++     +  +K   SN
Sbjct:  1535 VKQAQNAVIME-TKGITRCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSN 1593

Query:  1281 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLA 1340
               + +  T GIE A   I  EIK V   +G+ +D RH  LVAD M  +G    + R G+ 
Sbjct:  1594 EVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEGVYKPLNRFGI- 1652

Query:  1341 KMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
             +   S L   +FE +   L  A   G  D +S  S C+++G  +  GTG+  L Q
Sbjct:  1653 QSNSSPLQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDLKQ 1707

 Score = 131 (51.2 bits), Expect = 4.7e-64, Sum P(5) = 4.7e-64
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ RA  +P  AVG +AAQSIGEP TQMTL TFHFAG
Sbjct:  1195 KWQRALCDPGEAVGLVAAQSIGEPSTQMTLNTFHFAG 1231

 Score = 123 (48.4 bits), Expect = 4.7e-64, Sum P(5) = 4.7e-64
 Identities = 22/57 (38%), Positives = 36/57 (63%)

Query:   118 HGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSIC 174
             +GL D  +G    +  C+TC Q+ S C GHFG+I+LPLPV++  +F  +  +++  C
Sbjct:    48 NGLYDLALGPADNKEICSTCMQDFSSCPGHFGHIELPLPVYNPLFFDKLYLLIRGSC 104

 Score = 120 (47.3 bits), Expect = 1.5e-50, Sum P(5) = 1.5e-50
 Identities = 35/109 (32%), Positives = 57/109 (52%)

Query:   887 MKQLLPSVVIKGVQGINRAVIHEED-VEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSN 944
             +KQ   +V+++  +GI R +++E    +G  +  L  EG N+ ++     +  +K   SN
Sbjct:  1535 VKQAQNAVIME-TKGITRCLLNEVTRKDGSKEIMLNTEGINIHEMFKYADILDLKRLYSN 1593

Query:   945 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
               + +  T GIE A   I  EIK V   +G+ +D RH  LVAD M  +G
Sbjct:  1594 EVHAMASTYGIEVALRVIEKEIKDVFAVYGIEVDPRHLSLVADYMCFEG 1642

 Score = 68 (29.0 bits), Expect = 1.5e-57, Sum P(5) = 1.5e-57
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query:   764 GVPRIKEIIN-ASRNISTPI--ITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEV 818
             G+PR++EI+  AS NI TP+  I   ++K   L   + ++ ++ R  L EV   +  +
Sbjct:  1240 GIPRLREILLVASSNIKTPMMSIPVVMNKKA-LKQVKTLRKKITRVCLSEVLHKVNVI 1296

 Score = 59 (25.8 bits), Expect = 1.5e-33, Sum P(4) = 1.5e-33
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQ 63
             L++     + P++G+ L    QD +  G  +T +  FF R Q
Sbjct:   616 LVSTDQQYLVPKDGKPLAGLIQDHMVSGTSMTIRGCFFTRDQ 657

 Score = 58 (25.5 bits), Expect = 5.7e-27, Sum P(3) = 5.7e-27
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +S  S C+++G  +  GTG+  L Q
Sbjct:  1659 LQQMTFETSFKFLKQATMLGSYDKLSSPSACLVVGKVVKGGTGIFDLKQ 1707

 Score = 40 (19.1 bits), Expect = 5.7e-48, Sum P(5) = 5.7e-48
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query:   916 TKYKLLVEGDNL--RDVMATYGVKGVKCSS 943
             T Y  L  G  L   D++   G K V C S
Sbjct:   791 TAYLQLYRGFTLGVEDILVKDGAKSVTCGS 820

 Score = 40 (19.1 bits), Expect = 4.1e-25, Sum P(3) = 4.1e-25
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query:  1252 TKYKLLVEGDNL--RDVMATYGVKGVKCSS 1279
             T Y  L  G  L   D++   G K V C S
Sbjct:   791 TAYLQLYRGFTLGVEDILVKDGAKSVTCGS 820

 Score = 38 (18.4 bits), Expect = 3.0e-23, Sum P(5) = 3.0e-23
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query:   720 FDNPEF--HFPQVYYERRRDYSVKVT 743
             FD  E   HFPQ    R   Y++  T
Sbjct:   594 FDGDEMNAHFPQSELSRAEAYTLVST 619


>UNIPROTKB|E2R0G4 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9615
            "Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
            activity" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
            binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
            Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
        Length = 1746

 Score = 279 (103.3 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 87/278 (31%), Positives = 129/278 (46%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D++L NRQP+LH+ SI AH A++LP  +  R +   C  YNADFDGDEMN H PQ+E 
Sbjct:   556 NGDILLLNRQPTLHRPSIQAHHARILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSEL 615

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
              RAEA               VL       + P++G+ L    QD +  G  +T +  FF 
Sbjct:   616 GRAEAY--------------VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFT 661

Query:   460 RAQTMRIASTLIADTSDIC-----GIIKRFSWRSWNPVVFVRTAVI-WTGKQIFSLILKP 513
             R Q M +    + D           I+K F    W     V T +I    +    L L  
Sbjct:   662 REQYMELLYRGLTDKVGRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDHIPLSLSG 719

Query:   514 NRDCPVNANLKTKGRAYTA-N-EEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYI 571
                    A ++   R     N +  C  +S VI+R  ELL G +DK+  GS     V + 
Sbjct:   720 KAKISGKAWVQESPRPVPGFNPDSMC--ESQVIIREGELLCGVLDKAHYGSSAYGLV-HC 776

Query:   572 LLRDFGEDVAVTAMWRLSRMTSFYL-MNRGFSIGIGDV 608
                 +G + +   +  L+R+ + YL + RGF++G+ D+
Sbjct:   777 CYEIYGGETSGKVLTCLARLFTAYLQLYRGFTLGVEDI 814

 Score = 199 (75.1 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 38/65 (58%), Positives = 48/65 (73%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             + TP   GFV   F +G+ P EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   954 EFTPRAGGFVTGRFLTGIKPPEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 1013

Query:   666 QYDMS 670
             QYD++
Sbjct:  1014 QYDLT 1018

 Score = 187 (70.9 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 55/172 (31%), Positives = 86/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 1283
             L  S V+   +GI R +++E   +   K  +L  EG NL ++     V  + +  SN+ +
Sbjct:  1573 LAQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIH 1632

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              +  T GIEAA   I  EI+ V   +G+++D RH  LVAD M  +G    + R G+ +  
Sbjct:  1633 AMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEGVYKPLNRFGI-RSN 1691

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L  A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1692 SSPLQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1743

 Score = 136 (52.9 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 35/90 (38%), Positives = 51/90 (56%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDM 1168
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG   E    + +P    IL+    
Sbjct:  1211 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRG-EMNVTLGIPRLREILMVASA 1269

Query:  1169 DRIRLLHLEVDIDSIRYCIERTRGISGHLT 1198
             + I+   + V + + +  ++R + +   LT
Sbjct:  1270 N-IKTPMMSVPVFNTKKALKRVKSLKKQLT 1298

 Score = 120 (47.3 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 31/108 (28%), Positives = 58/108 (53%)

Query:    80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQ 139
             +G+  G  + E+ +++ S ++ ++   Y  D    P  +GL D  +G    +  C+TC Q
Sbjct:    13 QGISFGMYSAEE-LKKLS-VKSITNPRYL-DSLGNPSANGLYDLALGPADSKEVCSTCVQ 69

Query:   140 NLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNP---TCARVLL 184
             + ++C GH G+I+LPL V++   F  +  +L+  C N    TC R ++
Sbjct:    70 DFNNCSGHLGHIELPLTVYNPLLFDKLYLLLRGSCLNCHMLTCPRAVI 117

 Score = 119 (46.9 bits), Expect = 3.8e-51, Sum P(8) = 3.8e-51
 Identities = 36/106 (33%), Positives = 56/106 (52%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 947
             L  S V+   +GI R +++E   +   K  +L  EG NL ++     V  + +  SN+ +
Sbjct:  1573 LAQSAVVYATKGITRCLLNETTNKKNEKELVLNTEGINLPELFKYAEVLDLSRLYSNDIH 1632

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              +  T GIEAA   I  EI+ V   +G+++D RH  LVAD M  +G
Sbjct:  1633 AMASTYGIEAALRVIEKEIRDVFAVYGIAVDPRHLSLVADYMCFEG 1678

 Score = 83 (34.3 bits), Expect = 4.8e-58, Sum P(8) = 4.8e-58
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITA-YLDKDTDLDYARIVKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++    +    L   + +K +L R  LGEV E I+
Sbjct:  1256 GIPRLREILMVASANIKTPMMSVPVFNTKKALKRVKSLKKQLTRVCLGEVLEKID 1310

 Score = 66 (28.3 bits), Expect = 4.4e-34, Sum P(5) = 4.4e-34
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query:    21 VLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             VL       + P++G+ L    QD +  G  +T +  FF R Q M +
Sbjct:   622 VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMEL 668

 Score = 56 (24.8 bits), Expect = 2.0e-25, Sum P(5) = 2.0e-25
 Identities = 14/49 (28%), Positives = 23/49 (46%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             L+ +  +    F   A   G  D +   S C+++G  +  GTGL +L Q
Sbjct:  1695 LQQMTFETSFQFLKQATMMGSHDELRSPSACLVVGKVVKGGTGLFELKQ 1743

 Score = 42 (19.8 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query:   300 LEDIPLLLMNAELSKPSDLILTRLLVPPNCIRP 332
             LED+    M +  + PS   L  L+VPP+  RP
Sbjct:   295 LEDVD---MESRFN-PSVFFLDFLVVPPSRYRP 323

 Score = 41 (19.5 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 7/13 (53%), Positives = 8/13 (61%)

Query:   223 CPHCGEINGVVKK 235
             CPHC     VV+K
Sbjct:   207 CPHCKTGRSVVRK 219

 Score = 39 (18.8 bits), Expect = 2.2e-63, Sum P(8) = 2.2e-63
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY 758
             + RR Y  K       +L +W P  Y
Sbjct:  1142 QSRRKYQKKAAPCPDPSLAVWRPDIY 1167

 Score = 37 (18.1 bits), Expect = 9.1e-23, Sum P(6) = 9.1e-23
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query:   636 REGLVDTAV-KTAETGYMQRRLVKSLEDL 663
             RE L  TA+ K  +TG+    L   LED+
Sbjct:   272 REHL--TALWKNEDTGFFLNYLFSGLEDV 298


>TAIR|locus:2076661 [details] [associations]
            symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
            evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
            "DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
            "mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
            import into nucleus" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
            PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
            PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
            ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
            PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
            KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
            PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
            Uniprot:Q9SVY0
        Length = 1670

 Score = 245 (91.3 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 69/182 (37%), Positives = 97/182 (53%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             D D+VL NRQP+LHK S+MAH+ +VL   +T R +   C+ YNADFDGDEMNVH PQ E 
Sbjct:   558 DGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDGDEMNVHFPQDEI 617

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
             +RAEA               ++ AN +    P NGE L A  QD I    LLT+++ F +
Sbjct:   618 SRAEAY-------------NIVNAN-NQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLD 663

Query:   460 RAQTMRIA-STLIADT--SDICGII--KRFSWRSWNPVVFVRTAVI-----WTGKQIFSL 509
             +    ++  S+ + D   S   G    K     S   ++ V  A++     WTGKQ+ + 
Sbjct:   664 KDHFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITA 723

Query:   510 IL 511
             +L
Sbjct:   724 VL 725

 Score = 190 (71.9 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             GF+ + F SGL P E++FH M GREGLVDTAVKT+ +GY+QR L+K+LE L V YD
Sbjct:   993 GFISDRFLSGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLMKNLESLKVNYD 1048

 Score = 186 (70.5 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 43/119 (36%), Positives = 64/119 (53%)

Query:  1279 SNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHG 1338
             SN+ +++    G+EAAR TI+ EI  V +++G+S+  RH  L+AD MT  G    ++R G
Sbjct:  1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSGGYRPMSRMG 1609

Query:  1339 LAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 1397
                   S     +FE  +  +  AA YG+ D +   S  I +GLP   GTG   L+Q V
Sbjct:  1610 GIAESTSPFCRMTFETATKFIVQAATYGEKDTLETPSARICLGLPALSGTGCFDLMQRV 1668

 Score = 144 (55.7 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 30/88 (34%), Positives = 48/88 (54%)

Query:    87 VTKEDRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVG 146
             +T++D V++ S +++ S  L+  D    P P GL D ++G    +  C +CGQ    C G
Sbjct:    35 MTEQD-VRKHSFLKVTSPILH--DNVGNPFPGGLYDLKLGPKDDKQACNSCGQLKLACPG 91

Query:   147 HFGYIDLPLPVFHIGYFRCVINILQSIC 174
             H G+I+L  P++H   F  + N LQ  C
Sbjct:    92 HCGHIELVFPIYHPLLFNLLFNFLQRAC 119

 Score = 118 (46.6 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 22/39 (56%), Positives = 27/39 (69%)

Query:  1107 REKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             + K+  +  +P   VG LAAQS+GEP TQMTL TFH AG
Sbjct:  1144 KSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAG 1182

 Score = 115 (45.5 bits), Expect = 2.1e-48, Sum P(5) = 2.1e-48
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query:   943 SNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             SN+ +++    G+EAAR TI+ EI  V +++G+S+  RH  L+AD MT  G
Sbjct:  1550 SNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNLIADYMTFSG 1600

 Score = 106 (42.4 bits), Expect = 4.6e-47, Sum P(5) = 4.6e-47
 Identities = 53/229 (23%), Positives = 98/229 (42%)

Query:   609 TPGQGFVQNSFFSGLTPTEFFFH-TMGGREGLVDTAVKTAETGYMQRR--LVKSLEDLCV 665
             T   G++Q      L   +  +  T+   +G +    +  E G    R   ++  ++L +
Sbjct:  1026 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSI-IQFQYGEDGVDVHRSSFIEKFKELTI 1084

Query:   666 QYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTL-----LF 720
               DM          D +SG S   I  LP+++  G  K ++A+P +E +         L 
Sbjct:  1085 NQDMVLQKC---SEDMLSGASS-YISDLPISLKKGAEKFVEAMPMNERIASKFVRQEELL 1140

Query:   721 DNPEFHFPQVYYERRRDYSVKVTASV-----KVTLELWN-PGDYKLSQD-GVPRIKEII- 772
                +  F     +      V    SV     ++TL  ++  G  +++   G+PR++EI+ 
Sbjct:  1141 KLVKSKFFASLAQPGEPVGVLAAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILM 1200

Query:   773 NASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
              A+ NI TPI+T  L K    + A  +  RL + T+ ++ + +E   VP
Sbjct:  1201 TAAANIKTPIMTCPLLKGKTKEDANDITDRLRKITVADIIKSMELSVVP 1249

 Score = 74 (31.1 bits), Expect = 2.7e-45, Sum P(6) = 2.7e-45
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query:   384 DFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKS 426
             +F+G  ++ H+   +       P+LHK S+MAH+ +VL   K+
Sbjct:   546 NFEGKTVHRHMRDGDIVLVNRQPTLHKPSLMAHKVRVLKGEKT 588

 Score = 70 (29.7 bits), Expect = 4.6e-63, Sum P(6) = 4.6e-63
 Identities = 16/64 (25%), Positives = 32/64 (50%)

Query:   545 LRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIG 604
             +R +E + G +DK+     G  +  + L   +G + A   +   SR+ + +L   GF+ G
Sbjct:   783 IRKNEFVCGVIDKAQFADYGLVHTVHEL---YGSNAAGNLLSVFSRLFTVFLQTHGFTCG 839

Query:   605 IGDV 608
             + D+
Sbjct:   840 VDDL 843

 Score = 68 (29.0 bits), Expect = 1.4e-43, Sum P(5) = 1.4e-43
 Identities = 16/36 (44%), Positives = 20/36 (55%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 708
             AA YG+ D +   S  I +GLP   GTG   L+Q V
Sbjct:  1633 AATYGEKDTLETPSARICLGLPALSGTGCFDLMQRV 1668

 Score = 66 (28.3 bits), Expect = 1.9e-34, Sum P(5) = 1.9e-34
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query:    19 WQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 61
             + ++ AN +    P NGE L A  QD I    LLT+++ F ++
Sbjct:   623 YNIVNAN-NQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDK 664

 Score = 52 (23.4 bits), Expect = 6.1e-42, Sum P(5) = 6.1e-42
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query:  1369 DCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPV 1403
             D +SG S   I  LP+++  G  K ++A+P +E +
Sbjct:  1096 DMLSGASS-YISDLPISLKKGAEKFVEAMPMNERI 1129

 Score = 43 (20.2 bits), Expect = 4.7e-25, Sum P(4) = 4.7e-25
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query:   910 EDVE-GVTKYKLLVEGD 925
             EDVE  V++ KL+++GD
Sbjct:   130 EDVERAVSQLKLIIKGD 146

 Score = 43 (20.2 bits), Expect = 5.3e-18, Sum P(3) = 5.3e-18
 Identities = 9/17 (52%), Positives = 14/17 (82%)

Query:  1246 EDVE-GVTKYKLLVEGD 1261
             EDVE  V++ KL+++GD
Sbjct:   130 EDVERAVSQLKLIIKGD 146

 Score = 40 (19.1 bits), Expect = 1.6e-27, Sum P(5) = 1.6e-27
 Identities = 21/76 (27%), Positives = 33/76 (43%)

Query:   720 FDNPEF--HFPQVYYERRRDYSVKVTASVKVTLELWNPGDYKLSQDGVPRIKEIINASRN 777
             FD  E   HFPQ    R   Y++ V A+            Y    +G P ++ +I     
Sbjct:   603 FDGDEMNVHFPQDEISRAEAYNI-VNAN----------NQYARPSNGEP-LRALIQ-DHI 649

Query:   778 ISTPIIT---AYLDKD 790
             +S+ ++T    +LDKD
Sbjct:   650 VSSVLLTKRDTFLDKD 665


>POMBASE|SPBC4C3.05c [details] [associations]
            symbol:nuc1 "DNA-directed RNA polymerase I complex large
            subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
            "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
            polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
            polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
            evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
            promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
            evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
            [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
            localization to nucleolar rDNA repeats" evidence=IMP]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
            GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
            GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
            GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
            OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
            EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
            STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
            KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
            Uniprot:P15398
        Length = 1689

 Score = 229 (85.7 bits), Expect = 4.9e-60, Sum P(5) = 4.9e-60
 Identities = 64/199 (32%), Positives = 100/199 (50%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEMNVHLPQTEE 399
             + D+++ NRQP+LHK S+MAH+A++LP  +T R +   C  YNADFDGDEMN+H PQ+  
Sbjct:   599 NGDMLILNRQPTLHKPSMMAHKARILPGEKTIRMHYANCNSYNADFDGDEMNMHFPQSTN 658

Query:   400 ARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFN 459
             AR+EA              + +    S  + P +G+ L    QD +  G  LT K+ F+ 
Sbjct:   659 ARSEA--------------QFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYT 704

Query:   460 RAQTMRIA-STLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCP 518
             R +  ++    L  D + + G IK        P ++     I +      L LKP+    
Sbjct:   705 RDEYQQLLFQALKPDETGMYGRIKTLPPAIQRPGIYWTGKQIISS---VLLNLKPSDRPG 761

Query:   519 VNANLKTK--GRAYTANEE 535
             +N   K K  G+ ++ + E
Sbjct:   762 LNLKSKAKVPGKYWSPDSE 780

 Score = 198 (74.8 bits), Expect = 4.9e-60, Sum P(5) = 4.9e-60
 Identities = 34/56 (60%), Positives = 45/56 (80%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             GF+ + F +G+ P E++FH M GREGL+DTAVKT+ +GY+QR L+K LE LCVQYD
Sbjct:   993 GFIASRFLTGIAPQEYYFHCMAGREGLIDTAVKTSRSGYLQRCLMKHLEGLCVQYD 1048

 Score = 187 (70.9 bits), Expect = 4.9e-60, Sum P(5) = 4.9e-60
 Identities = 52/168 (30%), Positives = 80/168 (47%)

Query:  1231 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTYEVYKTL 1289
             VI  + GI R      D    T  K++ EG NL+ +   Y    +    +N+   + +  
Sbjct:  1517 VIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIY 1576

Query:  1290 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNL 1349
             G+EAAR+ I+ E+  V   +G+++D RH  L+AD MT +G      R G+ +   S    
Sbjct:  1577 GVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEGGYKAFNRMGI-EYNTSPFAK 1635

Query:  1350 ASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 1397
              SFE T   L +AA  G  D +S  S  +++G   N GTG   +   V
Sbjct:  1636 MSFETTCHFLTEAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFTPV 1683

 Score = 173 (66.0 bits), Expect = 4.1e-54, Sum P(5) = 4.1e-54
 Identities = 59/199 (29%), Positives = 96/199 (48%)

Query:   418 AKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIA-STLIADTSD 476
             A+ +    S  + P +G+ L    QD +  G  LT K+ F+ R +  ++    L  D + 
Sbjct:   663 AQFIANTDSQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALKPDETG 722

Query:   477 ICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLIL---KPNRDCPVNANLKTK----GRA 529
             + G IK        P    R  + WTGKQI S +L   KP+ D P   NLK+K    G+ 
Sbjct:   723 MYGRIKTL------PPAIQRPGIYWTGKQIISSVLLNLKPS-DRP-GLNLKSKAKVPGKY 774

Query:   530 YTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLS 589
             ++ + E    +  V+  + ELL G +DKS+ G+     V + +   +G D+A   +  LS
Sbjct:   775 WSPDSE----EGSVLFDDGELLCGILDKSSFGASAFGLV-HSVHELYGPDIAGRLLSVLS 829

Query:   590 RMTSFYLMNRGFSIGIGDV 608
             R+ + Y   RGF+  + D+
Sbjct:   830 RLFTAYAQMRGFTCRMDDL 848

 Score = 133 (51.9 bits), Expect = 4.9e-60, Sum P(5) = 4.9e-60
 Identities = 37/107 (34%), Positives = 53/107 (49%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             D V++ S  QIV+  L   D    P   GL D  +G   K + C TC  +   C GHFG+
Sbjct:    22 DDVEKISVKQIVNPVLL--DNLNHPTNGGLYDLALGPYLKNSVCATCHLDERYCPGHFGH 79

Query:   151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLR 197
             I LP+P +H  +F  + N+L+S C    C    L + K   F  +L+
Sbjct:    80 IVLPIPAYHPLFFSQMYNLLRSTCLY--CHHFKLSKVKVHLFFCRLK 124

 Score = 131 (51.2 bits), Expect = 4.9e-60, Sum P(5) = 4.9e-60
 Identities = 33/83 (39%), Positives = 49/83 (59%)

Query:  1068 SHQDKVSQPLREQILSHQDK-IGHGRES---NPFPSACKAEACRE-KYVRAQIEPATAVG 1122
             S  +K  + + E    + DK I   +ES   +   +  K +A  + +Y ++ ++P  +VG
Sbjct:  1136 SVSEKFQRAVDEYTQKNPDKLIASKKESKLDDSLLNESKFKALMQLRYQQSLVDPGESVG 1195

Query:  1123 ALAAQSIGEPGTQMTLKTFHFAG 1145
              LA+QSIGEP TQMTL TFHFAG
Sbjct:  1196 VLASQSIGEPSTQMTLNTFHFAG 1218

 Score = 125 (49.1 bits), Expect = 3.7e-47, Sum P(5) = 3.7e-47
 Identities = 32/100 (32%), Positives = 52/100 (52%)

Query:   895 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVK-CSSNNTYEVYKTL 953
             VI  + GI R      D    T  K++ EG NL+ +   Y    +    +N+   + +  
Sbjct:  1517 VIHEIPGITRCFSKPPDSALDTVPKVITEGVNLKAIWEFYNEISMNDIYTNDIAAILRIY 1576

Query:   954 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             G+EAAR+ I+ E+  V   +G+++D RH  L+AD MT +G
Sbjct:  1577 GVEAARNAIVHEVSSVFGVYGIAVDPRHLSLIADYMTFEG 1616

 Score = 68 (29.0 bits), Expect = 1.6e-53, Sum P(5) = 1.6e-53
 Identities = 18/53 (33%), Positives = 26/53 (49%)

Query:   764 GVPRIKEII-NASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYI 815
             G+PR++EII  AS NI TP +T  L+       A      + +  L EV   +
Sbjct:  1227 GIPRLREIIMTASANIQTPTMTLRLNDGVSDKRASAFCKEVNKLVLSEVVRQV 1279

 Score = 50 (22.7 bits), Expect = 2.2e-37, Sum P(4) = 2.2e-37
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 708
             +AA  G  D +S  S  +++G   N GTG   +   V
Sbjct:  1647 EAALRGDVDDLSNPSSRLVVGRVGNFGTGSFDIFTPV 1683

 Score = 41 (19.5 bits), Expect = 3.9e-25, Sum P(4) = 3.9e-25
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query:   916 TKYKLLVEGDNLRDVMATYGVKGVKCSSNNTY---EVYKTLGIEAAR 959
             ++Y +   GD LR ++  + V GV  +  +T+   + Y+ L  +A +
Sbjct:   671 SQYLVPTSGDPLRGLIQDHVVMGVWLTCKDTFYTRDEYQQLLFQALK 717

 Score = 37 (18.1 bits), Expect = 3.0e-44, Sum P(5) = 3.0e-44
 Identities = 11/48 (22%), Positives = 22/48 (45%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +++  NK      RNG++LI   Q  +    ++  K       +T+R+
Sbjct:   585 RLINTNKKVYRHVRNGDMLILNRQPTLHKPSMMAHKARILPGEKTIRM 632

 Score = 37 (18.1 bits), Expect = 3.6e-40, Sum P(5) = 3.6e-40
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query:   325 VPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKV 365
             +PP   RP +    K     VL N +PS      +  +AKV
Sbjct:   730 LPPAIQRPGIYWTGKQIISSVLLNLKPSDRPGLNLKSKAKV 770


>WB|WBGene00012999 [details] [associations]
            symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
            RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
            PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
            ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
            EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
            CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
        Length = 1737

 Score = 287 (106.1 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 92/286 (32%), Positives = 139/286 (48%)

Query:   332 PSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLP-HRTFRFNECVCTPYNADFDGDEM 390
             P V+  +K+  D+++ NRQPSLHK SI+ HRA+VL   R  R N   C  YNADFDGDEM
Sbjct:   575 PKVLRHMKN-GDMIMMNRQPSLHKPSILGHRARVLTGQRALRMNYAPCKAYNADFDGDEM 633

Query:   391 NVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYL 450
             N HL Q+  A+ E          +   A V     SN + P++   L+   QD +  G L
Sbjct:   634 NGHLVQSHIAQTE----------VREIANV----GSNFLVPKDATPLLGLIQDHVVSGVL 679

Query:   451 LTQKNAFFNRAQTMRIASTLIADTS---DICGIIKRFSWRSWNPVVFVRTAV---IWTGK 504
             L+ ++ F N+   M +     A  S   +I      +  R W     + T V   I  GK
Sbjct:   680 LSVRDRFLNKEDFMHLVLASFAQYSKRIEIPPPTILYPKRLWTGKQVITTIVKNCIPDGK 739

Query:   505 QIFSLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSG- 563
              + +L  K     P++  +   G  + A  +F   +S+V+ R  ELL G +DK+  G+  
Sbjct:   740 PLINLDGKAKT--PLSCWI-VPG--FDA-PQFDMSESHVVFRQGELLVGVLDKAHFGATQ 793

Query:   564 -GKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
              G A+  + L   +G    V  +   SR+ + YL   GF++G+ D+
Sbjct:   794 FGLAHCAFEL---YGHRCGVQLLSCFSRLFTTYLQFHGFTLGVADI 836

 Score = 183 (69.5 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 33/63 (52%), Positives = 45/63 (71%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P   G++   F +G+ P E FFHTM GREGL+DTAVKT+ +GY+QR ++K LE + V
Sbjct:   978 DPSPRAGGYIDQRFLTGMNPQELFFHTMAGREGLIDTAVKTSRSGYLQRCIIKHLEGIRV 1037

Query:   666 QYD 668
              YD
Sbjct:  1038 HYD 1040

 Score = 160 (61.4 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 51/166 (30%), Positives = 72/166 (43%)

Query:  1231 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCS-SNNTYEVYKTL 1289
             ++    GI R V   E   G     L  +G NL        V  V    SN+   + +  
Sbjct:  1548 IVHQTPGIERCVETTEQKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENY 1607

Query:  1290 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNL 1349
             G+EA    I TE+  V   +G+ +  RH  L AD MT  G++    R G      S L  
Sbjct:  1608 GVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQIQPFNR-GAMSSSSSPLQK 1666

Query:  1350 ASFENTSDHLFDAAFYGQTDCISGVSECIIMG-LPMNVGTGLIKLL 1394
              +FE T   L +A  +G+ D ++  S  ++MG LP   GTG   LL
Sbjct:  1667 MTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG-GTGSFDLL 1711

 Score = 123 (48.4 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 25/37 (67%), Positives = 28/37 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K +R+  +P   VG LAAQSIGEP TQMTL TFHFAG
Sbjct:  1223 KGMRSLADPGENVGLLAAQSIGEPSTQMTLNTFHFAG 1259

 Score = 111 (44.1 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 28/82 (34%), Positives = 40/82 (48%)

Query:   115 PIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSIC 174
             PI  GL D  +G +     C TC Q    C GH G+I L +PVF+   F+   N+L+  C
Sbjct:    48 PIAGGLYDPILGPDNTFDMCMTCNQYERHCPGHMGHIQLAVPVFNPLLFQFTYNLLKGSC 107

Query:   175 KNPTCARVLLGEEKAAGFRAKL 196
              +  C R+     K  G  A++
Sbjct:   108 VH--CHRLTC---KGDGVNARM 124

 Score = 99 (39.9 bits), Expect = 1.6e-48, Sum P(7) = 1.6e-48
 Identities = 30/102 (29%), Positives = 43/102 (42%)

Query:   895 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCS-SNNTYEVYKTL 953
             ++    GI R V   E   G     L  +G NL        V  V    SN+   + +  
Sbjct:  1548 IVHQTPGIERCVETTEQKNGKEMTILQTQGVNLAAFFKHADVLDVNSVYSNDLNLILENY 1607

Query:   954 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 995
             G+EA    I TE+  V   +G+ +  RH  L AD MT  G++
Sbjct:  1608 GVEACSKAITTEMNNVFAVYGIEVSKRHLSLTADYMTFTGQI 1649

 Score = 71 (30.1 bits), Expect = 1.0e-54, Sum P(7) = 1.0e-54
 Identities = 23/82 (28%), Positives = 41/82 (50%)

Query:   764 GVPRIKEII-NASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPD 822
             G+PR++EI+  AS++I+TP  +  +   T  D    +K  L+R  L ++ +     F  +
Sbjct:  1268 GIPRLREILMTASKSIATPSASIAVIAGTSRDRIDSIKRELDRVYLKQLLKN----FSLE 1323

Query:   823 DSFILIKLDMDRIRLLHLEVDI 844
             +   L +      R  HL +DI
Sbjct:  1324 EKITLTQ--NQSCRRYHLRIDI 1343

 Score = 66 (28.3 bits), Expect = 3.7e-29, Sum P(4) = 3.7e-29
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query:    27 SNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             SN + P++   L+   QD +  G LL+ ++ F N+   M +
Sbjct:   655 SNFLVPKDATPLLGLIQDHVVSGVLLSVRDRFLNKEDFMHL 695

 Score = 54 (24.1 bits), Expect = 3.9e-41, Sum P(6) = 3.9e-41
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query:   660 LEDLCVQYDMSF--DAAFYGQTDCISGVSECIIMG-LPMNVGTGLIKLL 705
             L+ +  +  M+F  +A  +G+ D ++  S  ++MG LP   GTG   LL
Sbjct:  1664 LQKMTFETTMAFLREALLHGEEDNVNSPSARLVMGALPRG-GTGSFDLL 1711

 Score = 52 (23.4 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 16/37 (43%), Positives = 22/37 (59%)

Query:   300 LEDIPLLL--MNAE-LSKPSD-LILTRLLVPPNCIRP 332
             L+  P+L+  +N E +  P D L L R+LVPP   RP
Sbjct:   331 LKLFPMLVDELNGEDMICPLDGLFLERILVPPKKFRP 367

 Score = 50 (22.7 bits), Expect = 5.7e-60, Sum P(7) = 5.7e-60
 Identities = 21/69 (30%), Positives = 31/69 (44%)

Query:   218 KKVSVCPHCGEINGVVKKCGLLKI-----SHEKYKNRTKKKDAIVEDLLAEYNEAVKFNP 272
             K++  CP C   NGV++  G   I     S  +   ++KK   I+ D    YNE    + 
Sbjct:   212 KRLQKCPLCKNRNGVLRNDGARSILIDFTSGARGGGKSKKAIIIIGD--NGYNEESSTDE 269

Query:   273 EIEAHKKFG 281
             + E  KK G
Sbjct:   270 DEE--KKGG 276

 Score = 46 (21.3 bits), Expect = 7.3e-21, Sum P(6) = 7.3e-21
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query:   785 AY-LDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDDSFILIKLDMDRI 835
             AY  D D D     +V+  + +T + E+        VP D+  L+ L  D +
Sbjct:   623 AYNADFDGDEMNGHLVQSHIAQTEVREIANVGSNFLVPKDATPLLGLIQDHV 674

 Score = 41 (19.5 bits), Expect = 1.1e-51, Sum P(7) = 1.1e-51
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query:   992 KGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDS 1038
             +GE+  N T + + RL + ++  + S + PS S   I   S + +DS
Sbjct:  1260 RGEM--NVT-LGIPRLREILMTASKSIATPSASIAVIAGTSRDRIDS 1303

 Score = 37 (18.1 bits), Expect = 2.9e-51, Sum P(7) = 2.9e-51
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query:   948 EVYKTLGIEAARSTIMTEIKLV 969
             E+  TLGI   R  +MT  K +
Sbjct:  1262 EMNVTLGIPRLREILMTASKSI 1283

 Score = 37 (18.1 bits), Expect = 1.7e-47, Sum P(7) = 1.7e-47
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query:  1284 EVYKTLGIEAARSTIMTEIKLV 1305
             E+  TLGI   R  +MT  K +
Sbjct:  1262 EMNVTLGIPRLREILMTASKSI 1283


>DICTYBASE|DDB_G0275759 [details] [associations]
            symbol:rpa1 "RNA polymerase I, largest subunit"
            species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
            binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA;ISS]
            [GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
            from RNA polymerase I promoter" evidence=ISS] [GO:0005736
            "DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
            "metal ion binding" evidence=IEA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
            dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
            GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
            eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
            ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
            EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
            KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
            PANTHER:PTHR19376:SF11 Uniprot:Q86H36
        Length = 1615

 Score = 225 (84.3 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
 Identities = 88/299 (29%), Positives = 130/299 (43%)

Query:   316 SDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNE 375
             S  +LT     P  +   V   L S  D VL NRQP+LHK  IM HR KVL       NE
Sbjct:   524 SKTLLTSHPHAPRGVNKKVYRHLLS-GDYVLANRQPTLHKPGIMGHRVKVLGK-----NE 577

Query:   376 CVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGE 435
                  + ++      N      +E       SL    + +   + + AN    + PRNG 
Sbjct:   578 KTLRMHYSNCS--TYNADF-DGDEMNIHFPQSL----LASAEIREICANNYQYLVPRNGA 630

Query:   436 LLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFV 495
              L    QD I  G LLT+++  F +A    I   L A     C  +         P   +
Sbjct:   631 PLRGLIQDHILTGVLLTKRDTLFTKADFQAI---LYAS----CWSVNTKHPIVTPPPCIL 683

Query:   496 RTAVIWTGKQIFSLILKPNR--DCPVNANLKTK--GRAYTANEEFCHRDSYVILRNSELL 551
             +   +W+GKQ+ S  L        P+N    +K   + +        RDS+VI+R +E++
Sbjct:   684 KPVPLWSGKQLISAALNQLTIGRAPLNLEAPSKIPTKMWGTKGLEITRDSHVIIRQNEMV 743

Query:   552 AGSMDKSTLGSG--GKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
             AG +DK   G+   G  +  Y L   +  DVA + +  L RM + YL +RGF+ G+ D+
Sbjct:   744 AGILDKGHFGASSYGLVHTCYEL---YDPDVAGSLLTLLGRMFTNYLQSRGFTCGVDDL 799

 Score = 213 (80.0 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
 Identities = 52/168 (30%), Positives = 85/168 (50%)

Query:  1231 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYG-VKGVKCSSNNTYEVYKTL 1289
             V+K  +GI R  ++E+ V G T Y +  EG NL ++      +K  +  +N+ Y + +  
Sbjct:  1448 VLKSCKGITRCFVNEKQVGGKTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKY 1507

Query:  1290 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNL 1349
             G+EA R  + +EI  V   +G+S+D RH +L+ D MT +G    + R G+     S    
Sbjct:  1508 GVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEGGYRALNRIGIEN-NTSPFQK 1566

Query:  1350 ASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 1397
              SFE T   L  A+  G  D ++  S  I++G  +  GTG   ++  V
Sbjct:  1567 MSFETTFSFLSKASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTIVAPV 1614

 Score = 190 (71.9 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             GFV + F +G+ P ++FFH M GREGL+DTAVKT+ +GY+QR L+K LE L VQYD
Sbjct:   943 GFVMDRFLTGVRPQDYFFHCMAGREGLIDTAVKTSRSGYLQRCLIKHLEGLSVQYD 998

 Score = 157 (60.3 bits), Expect = 2.0e-46, Sum P(5) = 2.0e-46
 Identities = 34/100 (34%), Positives = 57/100 (57%)

Query:   895 VIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYG-VKGVKCSSNNTYEVYKTL 953
             V+K  +GI R  ++E+ V G T Y +  EG NL ++      +K  +  +N+ Y + +  
Sbjct:  1448 VLKSCKGITRCFVNEKQVGGKTHYSIQSEGVNLSEIFELRDKLKIDEIYTNDIYAILQKY 1507

Query:   954 GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             G+EA R  + +EI  V   +G+S+D RH +L+ D MT +G
Sbjct:  1508 GVEACRQAVTSEISNVFAAYGISVDKRHLILLGDYMTFEG 1547

 Score = 124 (48.7 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
 Identities = 27/84 (32%), Positives = 44/84 (52%)

Query:    91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
             D V++ S  QIV    +  D    P+P GL D  +G       C TC  +  +C GHFG+
Sbjct:    24 DDVRKLSVKQIVEIESF--DMLGGPVPGGLHDPALGPTGPAERCATCSLDFIECPGHFGH 81

Query:   151 IDLPLPVFHIGYFRCVINILQSIC 174
             I+L +P ++   F+ +  +L++ C
Sbjct:    82 IELAIPCYNPVSFQTIFKLLKNKC 105

 Score = 122 (48.0 bits), Expect = 1.0e-59, Sum P(5) = 1.0e-59
 Identities = 23/36 (63%), Positives = 26/36 (72%)

Query:  1110 YVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             Y R+ + P  +VG L AQSIGEP TQMTL TFH AG
Sbjct:  1129 YSRSMVSPGESVGLLCAQSIGEPSTQMTLNTFHLAG 1164

 Score = 74 (31.1 bits), Expect = 2.7e-36, Sum P(4) = 2.7e-36
 Identities = 17/46 (36%), Positives = 23/46 (50%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             + AN    + PRNG  L    QD I  G LLT+++  F +A    I
Sbjct:   616 ICANNYQYLVPRNGAPLRGLIQDHILTGVLLTKRDTLFTKADFQAI 661

 Score = 49 (22.3 bits), Expect = 3.5e-52, Sum P(5) = 3.5e-52
 Identities = 19/75 (25%), Positives = 40/75 (53%)

Query:   749 TLELWNPGDYKLSQDGVPRIKEII-NASRNISTPIITAYLDKDTD-LDYARIVKGRLERT 806
             T  L   G+  ++  G+PR++E+I  A+    TP++   ++  T+ ++  ++ K  LE  
Sbjct:  1159 TFHLAGRGEANVTL-GIPRLRELIMTATTKPITPLMEFQINDSTNKVETEKMAK-YLEIL 1216

Query:   807 TLGEVCEYI--EEVF 819
              L ++ + I  +E F
Sbjct:  1217 KLSDIIKDITVQEYF 1231

 Score = 47 (21.6 bits), Expect = 5.6e-52, Sum P(5) = 5.6e-52
 Identities = 15/60 (25%), Positives = 33/60 (55%)

Query:   994 EVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQ--EILALSN--ETLDSKEFLQDTSENF 1049
             E++   T   +  L++  I  ++++ +    A+  EIL LS+  + +  +E+ QDT+ N+
Sbjct:  1179 ELIMTATTKPITPLMEFQINDSTNKVETEKMAKYLEILKLSDIIKDITVQEYFQDTNRNY 1238

 Score = 46 (21.3 bits), Expect = 1.2e-26, Sum P(4) = 1.2e-26
 Identities = 11/45 (24%), Positives = 26/45 (57%)

Query:   235 KCGLLKISHEKYKNRTKKKDAIVEDL----LAEYNEAVKFNPEIE 275
             K  ++  ++E +K++   +  ++E L    + EYN ++K  PE++
Sbjct:  1028 KFPIIAENYELFKSQFPMEQ-LIEQLKNQEVVEYNRSIKTQPELD 1071

 Score = 43 (20.2 bits), Expect = 1.4e-34, Sum P(4) = 1.4e-34
 Identities = 10/36 (27%), Positives = 18/36 (50%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAV 708
             A+  G  D ++  S  I++G  +  GTG   ++  V
Sbjct:  1579 ASLMGDYDTVTSPSSRIVLGQIVKNGTGSFTIVAPV 1614

 Score = 40 (19.1 bits), Expect = 1.6e-18, Sum P(3) = 1.6e-18
 Identities = 19/68 (27%), Positives = 30/68 (44%)

Query:   209 LKKKILETTKKVSVCPHCG-EINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEA 267
             L++ I+  T K  + P    +IN    K    K++  KY    K  D I +  + EY + 
Sbjct:  1177 LRELIMTATTK-PITPLMEFQINDSTNKVETEKMA--KYLEILKLSDIIKDITVQEYFQD 1233

Query:   268 VKFNPEIE 275
                N +IE
Sbjct:  1234 TNRNYDIE 1241


>UNIPROTKB|I3LJR4 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9823
            "Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            GeneTree:ENSGT00700000104490 EMBL:FP565284
            Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
        Length = 1010

 Score = 266 (98.7 bits), Expect = 7.9e-55, Sum P(3) = 7.9e-55
 Identities = 54/126 (42%), Positives = 79/126 (62%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

Query:   461 AQTMRI 466
              + M +
Sbjct:   558 GEVMNL 563

 Score = 245 (91.3 bits), Expect = 7.9e-55, Sum P(3) = 7.9e-55
 Identities = 45/63 (71%), Positives = 55/63 (87%)

Query:   607 DVTP-GQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D  P  +GFV+NS+ +GLTPTEFFFH MGGREGL+DTAVKTAETGY+QRRL+KS+E + V
Sbjct:   814 DYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMV 873

Query:   666 QYD 668
             +YD
Sbjct:   874 KYD 876

 Score = 206 (77.6 bits), Expect = 7.9e-55, Sum P(3) = 7.9e-55
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292

 Score = 153 (58.9 bits), Expect = 6.0e-43, Sum P(3) = 6.0e-43
 Identities = 52/220 (23%), Positives = 101/220 (45%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKV--LMANKSNLVTPRNGELLIAATQDFITG 447
             ++V  P   +   + + +LH    +  RA++  L      +VTP++   ++   QD +T 
Sbjct:   486 LSVTTPYNADFDGDEM-NLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTA 544

Query:   448 GYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIF 507
                 T+++ F  R + M +   L   T D  G + +       P + ++   +WTGKQIF
Sbjct:   545 VRKFTKRDVFLERGEVMNLLMFL--STWD--GKVPQ-------PAI-LKPRPLWTGKQIF 592

Query:   508 SLILKPNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKAN 567
             SLI+  + +C    +           +     D+ V++ N EL+ G + K +LG+    +
Sbjct:   593 SLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSA-GS 651

Query:   568 VFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             + +I   + G D+       +  + + +L+  G +IGIGD
Sbjct:   652 LVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGD 691

 Score = 56 (24.8 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query:    29 LVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRI 67
             +VTP++   ++   QD +T     T+++ F  R + M +
Sbjct:   525 IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNL 563

 Score = 52 (23.4 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:   902 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 959
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 52 (23.4 bits), Expect = 1.0e-34, Sum P(3) = 1.0e-34
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query:  1238 INRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAAR 1295
             +NR +    D  G +  K L E +N + ++ + G KG K + +    V     +E  R
Sbjct:   741 VNRILNDARDKTGSSAQKSLSEYNNFKSMVVS-GAKGSKINISQVIAVVGQQNVEGKR 797

 Score = 38 (18.4 bits), Expect = 2.9e-33, Sum P(3) = 2.9e-33
 Identities = 11/38 (28%), Positives = 18/38 (47%)

Query:   987 DLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLS 1024
             +L  + G  L      ++ R+L+D   K  S +  SLS
Sbjct:   724 ELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLS 761


>TIGR_CMR|BA_0103 [details] [associations]
            symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
            species:198094 "Bacillus anthracis str. Ames" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
            EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
            GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
            RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
            IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
            EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
            GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
            KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
            BioCyc:BANT260799:GJAJ-114-MONOMER
            BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
        Length = 1203

 Score = 225 (84.3 bits), Expect = 6.7e-36, Sum P(5) = 6.7e-36
 Identities = 81/295 (27%), Positives = 138/295 (46%)

Query:   330 IRPSVISDLKS--DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDG 387
             ++P V   L+S      VL NR P+LH+L I A    ++  R  R +  VCT YNADFDG
Sbjct:   393 VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDG 452

Query:   388 DEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITG 447
             D+M VH+P + EA+AEA              ++LM    N++ P++G+ ++  +QD + G
Sbjct:   453 DQMAVHVPLSSEAQAEA--------------RLLMLAAQNILNPKDGKPVVTPSQDMVLG 498

Query:   448 GYLLT-QKNAFFNRAQTMRIAS-TLIADTSDICGIIKRFSWRSW--NPVVFV---RTAVI 500
              Y LT ++          + A+  L+A  +    +  R +  +   N V F    +  ++
Sbjct:   499 NYYLTLEREGAIGEGMVFKDANEALLAYQNGYVHLHTRVAVAASAVNNVTFTEEQKNMLL 558

Query:   501 WT--GKQIFSLILK---PNRDCPVNANLKTKGRAYTANEEFCHRDSYV--ILRNSELLAG 553
              T  GK IF+ IL    P  + P N+NL+ +    T  + F  + + +  I+ + E +A 
Sbjct:   559 LTTVGKLIFNEILPESFPYINEPTNSNLEKE----TPAKYFVEKGANIKEIIASREEVA- 613

Query:   554 SMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
                K  LG     N+   + + F        + R+  +   Y    G ++G+ D+
Sbjct:   614 PFSKKILG-----NIIAEVFKRFKITETSRMLDRMKNLGFKYSTKAGITVGVSDI 663

 Score = 172 (65.6 bits), Expect = 6.7e-36, Sum P(5) = 6.7e-36
 Identities = 76/297 (25%), Positives = 134/297 (45%)

Query:  1101 CKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDS 1160
             CK    R       +E   AVG +AAQSIGEPGTQ+T++TFH  G            DD 
Sbjct:   899 CKKCYGRNLATGTDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGG---------VAGDD- 948

Query:  1161 FILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLT-VSGHSFLILKPKDSSKSFNSK 1219
                I   + RI+ +  E      +  I    G+   +  V     ++++ +  ++++   
Sbjct:   949 ---ITQGLPRIQEI-FEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIP 1004

Query:  1220 MYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSS 1279
                  +++P   I   + +    I  +++  VT    + E   LR+V   Y ++GV+   
Sbjct:  1005 YGARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEY-LLREVQKVYRMQGVEIGD 1063

Query:  1280 NNTYEVYKTLGIEAARSTIMTEIKLV----MENHGMSIDFRHPMLVADLM--TSKGEVLG 1333
              +  EV     +   R +   E  ++    ++ H  + D    +L+      T++  +LG
Sbjct:  1064 KHV-EVMVRQMLRKVRVSDAGETDVLPGTLLDIHQFT-DANAKVLLQGKQPATARPVLLG 1121

Query:  1334 ITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             IT+  L    +S L+ ASF+ T+  L DAA  G+ D + G+ E +I+G  +  GTG+
Sbjct:  1122 ITKASLET--DSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGM 1176

 Score = 140 (54.3 bits), Expect = 6.7e-36, Sum P(5) = 6.7e-36
 Identities = 27/54 (50%), Positives = 39/54 (72%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             +++SF  GLT  E+F  T G R+GL DTA+KTA++GY+ RRLV   +D+ V+ D
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIVRED 816

 Score = 68 (29.0 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
 Identities = 11/34 (32%), Positives = 22/34 (64%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             ++LM    N++ P++G+ ++  +QD + G Y LT
Sbjct:   470 RLLMLAAQNILNPKDGKPVVTPSQDMVLGNYYLT 503

 Score = 57 (25.1 bits), Expect = 6.7e-36, Sum P(5) = 6.7e-36
 Identities = 22/86 (25%), Positives = 38/86 (44%)

Query:    85 GTVTKEDRVQQQSHIQIVSKNLYCQ---DPQRTPIPHGLLDRRMGTNQKEANCTTCGQNL 141
             G V K + +  ++ ++     L+C+    PQ+    H    +R+    K   C  CG  +
Sbjct:    26 GEVKKPETINYRT-LKPEKDGLFCERIFGPQKDWECHCGKYKRV--RYKGVVCDRCGVEV 82

Query:   142 SDCV---GHFGYIDLPLPVFHIGYFR 164
             +         G+I+L  PV HI YF+
Sbjct:    83 TRAKVRRERMGHIELAAPVSHIWYFK 108

 Score = 56 (24.8 bits), Expect = 4.0e-24, Sum P(5) = 4.0e-24
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGL 701
             DAA  G+ D + G+ E +I+G  +  GTG+
Sbjct:  1147 DAAIKGKRDELLGLKENVIIGKLVPAGTGM 1176

 Score = 46 (21.3 bits), Expect = 4.0e-23, Sum P(5) = 4.0e-23
 Identities = 20/56 (35%), Positives = 28/56 (50%)

Query:   756 GDYKLSQDGVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEV 811
             GD  ++Q G+PRI+EI  A RN     + + +D    +     VK R E    GEV
Sbjct:   946 GD-DITQ-GLPRIQEIFEA-RNPKGQAVISEIDGV--IAAINDVKDRQEVVVQGEV 996

 Score = 40 (19.1 bits), Expect = 6.7e-36, Sum P(5) = 6.7e-36
 Identities = 19/52 (36%), Positives = 28/52 (53%)

Query:   313 SKPSDLILTRL-LVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKL 356
             ++PS +IL  L ++PP  +RP V  D      SD ND+   + NR   L +L
Sbjct:   221 NEPSWMILDVLPVIPPE-LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL 271

 Score = 38 (18.4 bits), Expect = 8.4e-09, Sum P(3) = 8.4e-09
 Identities = 15/53 (28%), Positives = 24/53 (45%)

Query:   431 PRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKR 483
             P  GE+L+A  Q  IT       +N+     +T+ I S    +T    G+ K+
Sbjct:   855 PETGEVLVAENQ-LITEDIAHIVENS---GVETVNIRSAFTCNTRH--GVCKK 901


>UNIPROTKB|Q6NX41 [details] [associations]
            symbol:POLR2A "DNA-directed RNA polymerase" species:9606
            "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
            "transcription, DNA-dependent" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
            UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
            SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
            HOVERGEN:HBG097653 Uniprot:Q6NX41
        Length = 566

 Score = 257 (95.5 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 53/120 (44%), Positives = 76/120 (63%)

Query:   341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
             D D+V+FNRQP+LHK+S+M HR ++LP  TFR N  V TPYNADFDGDEMN+HLPQ+ E 
Sbjct:   452 DGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLET 511

Query:   401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
             RAE    + +L+++             +VTP++   ++   QD +T     T+++ F  R
Sbjct:   512 RAE----IQELAMVPRM----------IVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLER 557

 Score = 206 (77.6 bits), Expect = 1.5e-34, Sum P(2) = 1.5e-34
 Identities = 68/254 (26%), Positives = 123/254 (48%)

Query:   119 GLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICKNPT 178
             GL+D R G  ++   C TC  N+++C GHFG+I+L  PVFH+G+    + +L+ +C    
Sbjct:    56 GLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCF--F 113

Query:   179 CARVLLGEEKAAGFRAKLRNPALSYLVRKSL---KKK---ILETTKKVSVCPHCGEIN-- 230
             C+++L+             NP +  ++ KS    KK+   + +  K  ++C    E++  
Sbjct:   114 CSKLLVDSN----------NPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNK 163

Query:   231 -GVVKKCGLLKISHEK-YKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
              GV +  G   ++ EK +    + +  I    L  Y E    N + +  KK      L+P
Sbjct:   164 FGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQ-EKKI----LLSP 218

Query:   289 LEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFN 348
               V ++F+ I  E+  +L M    ++P  +I+T L VPP  +RP+V+    + N   L +
Sbjct:   219 ERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTH 278

Query:   349 RQPSLHKLSIMAHR 362
             +   + K++    R
Sbjct:   279 KLADIVKINNQLRR 292


>UNIPROTKB|F1NJE0 [details] [associations]
            symbol:POLR1A "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF04998 Pfam:PF05000 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
            GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 EMBL:AADN02014782 EMBL:AADN02014783
            IPI:IPI00819994 Ensembl:ENSGALT00000037150 OMA:QKKMARV
            ArrayExpress:F1NJE0 Uniprot:F1NJE0
        Length = 917

 Score = 195 (73.7 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
 Identities = 38/67 (56%), Positives = 49/67 (73%)

Query:   607 DVTPGQG-FVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRR--LVKSLEDL 663
             D +P  G FV   F +G+ P+EFFFH M GREGLVDTAVKT+ +GY+QR   ++K LE L
Sbjct:   144 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGL 203

Query:   664 CVQYDMS 670
              VQYD++
Sbjct:   204 VVQYDLT 210

 Score = 190 (71.9 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
 Identities = 55/172 (31%), Positives = 87/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 1283
             L  + VI  V+GI R +++E   E   K  +L  EG NL ++     +  + +  SN+ +
Sbjct:   744 LTRNTVIHEVKGITRCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIH 803

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              + K  GIE+A   ++ EIK V   +G+ +D RH  LVAD M  +G    + R G+ +  
Sbjct:   804 AMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSS 862

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L +A   G  D +   S C+++G  +  GTGL  L Q
Sbjct:   863 SSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQ 914

 Score = 131 (51.2 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG
Sbjct:   403 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAG 439

 Score = 125 (49.1 bits), Expect = 9.7e-21, Sum P(3) = 9.7e-21
 Identities = 36/106 (33%), Positives = 57/106 (53%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 947
             L  + VI  V+GI R +++E   E   K  +L  EG NL ++     +  + +  SN+ +
Sbjct:   744 LTRNTVIHEVKGITRCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIH 803

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              + K  GIE+A   ++ EIK V   +G+ +D RH  LVAD M  +G
Sbjct:   804 AMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEG 849

 Score = 70 (29.7 bits), Expect = 1.9e-27, Sum P(3) = 1.9e-27
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITAYLDKDTDLDYARI--VKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++  +   T   + ++  +K +L R  L EV + +E
Sbjct:   448 GIPRLREILMVASANIKTPMMSVPV-LGTKKAHKKVKQLKKQLTRVCLAEVLQKVE 502

 Score = 56 (24.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query:   667 YDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             Y    +A   G  D +   S C+++G  +  GTGL  L Q
Sbjct:   875 YKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQ 914

 Score = 44 (20.5 bits), Expect = 1.9e-33, Sum P(4) = 1.9e-33
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY--KLSQDGVPRIKEIIN 773
             ++RR Y  K       +L +W P  Y   +S+     +++ IN
Sbjct:   334 KKRRKYLKKANKCPDPSLAVWRPDSYFASVSETFESGVEDYIN 376

 Score = 37 (18.1 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query:   386 DGDEMNVHLPQTEEARAE 403
             +G+E     P+ EEA +E
Sbjct:   638 NGEENTAENPEDEEAESE 655


>TIGR_CMR|CHY_2317 [details] [associations]
            symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
            subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
            eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
            ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
            RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
            STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
            PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
        Length = 1152

 Score = 203 (76.5 bits), Expect = 1.1e-30, Sum P(5) = 1.1e-30
 Identities = 43/108 (39%), Positives = 64/108 (59%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             VL NR P+LH+L I A    ++  R  + +  VCT YNADFDGD+M VH+P + EA+AEA
Sbjct:   410 VLLNRAPTLHRLGIQAFEPVLVEGRAIQIHPLVCTAYNADFDGDQMAVHVPLSAEAQAEA 469

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
                           ++LM +  N++ P++G+ ++  TQD + G Y LT
Sbjct:   470 --------------RLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLT 503

 Score = 160 (61.4 bits), Expect = 1.1e-30, Sum P(5) = 1.1e-30
 Identities = 75/290 (25%), Positives = 133/290 (45%)

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDMDRIRLL 1174
             ++   AVG +AAQSIGEPGTQ+T++TFH  G   E I +     +       +  R +  
Sbjct:   874 VDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITQGLPRVEELF----EARRPKGQ 929

Query:  1175 HLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQ--MKQLLPSVVI 1232
              +  +ID +   +E  R   G   +      ++  +   +      YQ  +K      V 
Sbjct:   930 AIITEIDGV---VE-VRDNKGRREIE-----VINQETGERKVYPITYQARIKVQTGDKVY 980

Query:  1233 KGVQGINRAVIHEED---VEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTL 1289
              G + +    I+  D   V+G+   +L +    L++V   Y ++GV+ +  +   V + +
Sbjct:   981 AGDE-LTEGPINPHDLIKVKGIEGAQLYL----LQEVQKVYRMQGVEINDKHIEVVIRQM 1035

Query:  1290 ----GIEAARSTIMTEIKLVMENHGMSIDFRHPMLVAD---LMTSKGEVLGITRHGLAKM 1342
                  IE +  T +    LV        +  +  ++A      T+K  +LGIT+  LA  
Sbjct:  1036 LRKVKIEDSGDTDLLPGSLV---DIFEFEDENAKVIAKGGKPATAKRVLLGITKASLAT- 1091

Query:  1343 KESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIK 1392
              +S L+ ASF+ T+  L +AA  G+ D + G+ E +I+G  +  GTG+ +
Sbjct:  1092 -DSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIPAGTGMAR 1140

 Score = 129 (50.5 bits), Expect = 1.1e-30, Sum P(5) = 1.1e-30
 Identities = 29/71 (40%), Positives = 43/71 (60%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV-QYDMSFDA 673
             ++ +F  GLT  E+F  T G R+GL DTA++TA++GY+ RRLV   +D+ V + D   + 
Sbjct:   724 IKANFREGLTVLEYFISTHGARKGLADTALRTADSGYLTRRLVDVCQDVIVREEDCGTED 783

Query:   674 AFYGQTDCISG 684
               Y  TD   G
Sbjct:   784 GIY-VTDVKDG 793

 Score = 75 (31.5 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
 Identities = 12/34 (35%), Positives = 23/34 (67%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             ++LM +  N++ P++G+ ++  TQD + G Y LT
Sbjct:   470 RLLMLSSHNILNPKDGKPVVVPTQDMVIGSYYLT 503

 Score = 74 (31.1 bits), Expect = 2.5e-22, Sum P(6) = 2.5e-22
 Identities = 27/109 (24%), Positives = 52/109 (47%)

Query:   945 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVEL 1004
             N +++ K  GIE A+  ++ E++ V    G+ I+ +H  +V   M  K ++  +G    L
Sbjct:   991 NPHDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIEVVIRQMLRKVKIEDSGDTDLL 1050

Query:  1005 KRLLDDII------AKNSSRSD-PSLSAQEILALSNETLDSKEFLQDTS 1046
                L DI       AK  ++   P+ + + +L ++  +L +  FL   S
Sbjct:  1051 PGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKASLATDSFLSAAS 1099

 Score = 55 (24.4 bits), Expect = 1.5e-11, Sum P(4) = 1.5e-11
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLIK 703
             +AA  G+ D + G+ E +I+G  +  GTG+ +
Sbjct:  1109 EAAIKGKVDPLLGLKENVIIGKLIPAGTGMAR 1140

 Score = 52 (23.4 bits), Expect = 1.1e-30, Sum P(5) = 1.1e-30
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI YF+
Sbjct:    75 CDRCGVEVTRSKVRRERLGHIELAAPVSHIWYFK 108

 Score = 45 (20.9 bits), Expect = 2.5e-22, Sum P(6) = 2.5e-22
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLE 804
             G+PR++E+  A R     IIT  +D   ++   R  KGR E
Sbjct:   913 GLPRVEELFEARRPKGQAIITE-IDGVVEV---RDNKGRRE 949

 Score = 45 (20.9 bits), Expect = 1.0e-08, Sum P(4) = 1.0e-08
 Identities = 23/75 (30%), Positives = 36/75 (48%)

Query:   427 NLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSW 486
             ++V P  GELL+A  Q+ IT    + +K    N  + ++I S L   T    G+  R   
Sbjct:   812 DVVHPETGELLVAKNQE-ITEE--IAEKIVSAN-IKKVKIRSVLTCRTRH--GVCTRCYG 865

Query:   487 RSW--NPVVFVRTAV 499
             R+   N +V +  AV
Sbjct:   866 RNLATNSIVDIGEAV 880

 Score = 43 (20.2 bits), Expect = 3.7e-06, Sum P(2) = 3.7e-06
 Identities = 8/17 (47%), Positives = 12/17 (70%)

Query:    28 NLVTPRNGELLIAATQD 44
             ++V P  GELL+A  Q+
Sbjct:   812 DVVHPETGELLVAKNQE 828

 Score = 42 (19.8 bits), Expect = 4.5e-17, Sum P(4) = 4.5e-17
 Identities = 18/68 (26%), Positives = 29/68 (42%)

Query:   229 INGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNP 288
             IN +V K  L KI  E Y+    +K   + D L +      F+   +A    G++    P
Sbjct:   570 INHLVDKKALGKIVTESYRKLGYEKTGYLLDGLKKLG----FHYATKAGLTIGIVDITVP 625

Query:   289 LEVLQLFE 296
              E  ++ E
Sbjct:   626 KEKQEILE 633

 Score = 39 (18.8 bits), Expect = 1.1e-30, Sum P(5) = 1.1e-30
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query:   588 LSRMTSFYLMNRGFSIGIGDVT 609
             L ++   Y    G +IGI D+T
Sbjct:   602 LKKLGFHYATKAGLTIGIVDIT 623


>UNIPROTKB|P0A674 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
            evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
            GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
            GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
            Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
            eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
            RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
            ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
            EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
            GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
            KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
            TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
        Length = 1316

 Score = 183 (69.5 bits), Expect = 4.0e-29, Sum P(5) = 4.0e-29
 Identities = 42/119 (35%), Positives = 69/119 (57%)

Query:   334 VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVH 393
             V+ ++ +++ V+L NR P+LH+L I A    ++  +  + +  VC  +NADFDGD+M VH
Sbjct:   486 VLEEVIAEHPVLL-NRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQMAVH 544

Query:   394 LPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
             LP + EA+AEA              ++LM + +N+++P +G  L     D +TG Y LT
Sbjct:   545 LPLSAEAQAEA--------------RILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT 589

 Score = 135 (52.6 bits), Expect = 4.0e-29, Sum P(5) = 4.0e-29
 Identities = 26/52 (50%), Positives = 39/52 (75%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             V++SF  GLT  E+F +T G R+GL DTA++TA++GY+ RRLV   +D+ V+
Sbjct:   836 VKSSFREGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVR 887

 Score = 103 (41.3 bits), Expect = 4.0e-29, Sum P(5) = 4.0e-29
 Identities = 19/31 (61%), Positives = 25/31 (80%)

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             ++   AVG +AAQSIGEPGTQ+T++TFH  G
Sbjct:   989 VDIGEAVGIVAAQSIGEPGTQLTMRTFHQGG 1019

 Score = 97 (39.2 bits), Expect = 4.0e-29, Sum P(5) = 4.0e-29
 Identities = 32/102 (31%), Positives = 55/102 (53%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             ++GIT+  LA   +S L+ ASF+ T+  L DAA   ++D ++G+ E +I+G  +  GTG+
Sbjct:  1207 LMGITKASLAT--DSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIGKLIPAGTGI 1264

Query:  1391 IKL----LQAVPRSEPVPRTL-----LFDNPEFHTNTLAAVP 1423
              +     +Q    +     T+      + +P+F   T AAVP
Sbjct:  1265 NRYRNIAVQPTEEARAAAYTIPSYEDQYYSPDFGAATGAAVP 1306

 Score = 63 (27.2 bits), Expect = 6.7e-16, Sum P(4) = 6.7e-16
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             ++LM + +N+++P +G  L     D +TG Y LT
Sbjct:   556 RILMLSSNNILSPASGRPLAMPRLDMVTGLYYLT 589

 Score = 60 (26.2 bits), Expect = 1.6e-19, Sum P(4) = 1.6e-19
 Identities = 21/88 (23%), Positives = 39/88 (44%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHFPQVY 731
             DAA   ++D ++G+ E +I+G  +  GTG+ +      +     R   +  P +     Y
Sbjct:  1235 DAAINCRSDKLNGLKENVIIGKLIPAGTGINRYRNIAVQPTEEARAAAYTIPSYE--DQY 1292

Query:   732 YERRRDYSVKVTASVKVTLELWNPGDYK 759
             Y    D+     A+V   L+ +   DY+
Sbjct:  1293 YSP--DFGAATGAAVP--LDDYGYSDYR 1316

 Score = 54 (24.1 bits), Expect = 4.0e-29, Sum P(5) = 4.0e-29
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFRCV 166
             C  CG  ++         G+I+L  PV HI YF+ V
Sbjct:    75 CERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGV 110

 Score = 52 (23.4 bits), Expect = 5.7e-24, Sum P(5) = 5.7e-24
 Identities = 21/111 (18%), Positives = 51/111 (45%)

Query:   943 SNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPV 1002
             S + +EV +  G    +  ++ E++ V    G+SI  +H  ++   M  +  ++ +G+  
Sbjct:  1115 SADPHEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTE 1174

Query:  1003 ELK-RLLD--DIIAKN----SSRSDPSLSAQEILALSNETLDSKEFLQDTS 1046
              L   L+D  +  A+N    +   +P+     ++ ++  +L +  +L   S
Sbjct:  1175 FLPGSLIDRAEFEAENRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAAS 1225

 Score = 44 (20.5 bits), Expect = 9.0e-24, Sum P(5) = 9.0e-24
 Identities = 17/77 (22%), Positives = 36/77 (46%)

Query:  1279 SNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVL--GITR 1336
             S + +EV +  G    +  ++ E++ V    G+SI  +H  ++   M  +  ++  G T 
Sbjct:  1115 SADPHEVLRVQGPREVQIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGSTE 1174

Query:  1337 HGLAKMKESVLNLASFE 1353
                  +  S+++ A FE
Sbjct:  1175 F----LPGSLIDRAEFE 1187

 Score = 43 (20.2 bits), Expect = 7.3e-20, Sum P(5) = 7.3e-20
 Identities = 13/66 (19%), Positives = 29/66 (43%)

Query:   753 WNPGDYKLSQDGVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVC 812
             W PGD  +++  + R+  + N    +  P +   + K      A I+    ER  +  V 
Sbjct:   656 WQPGDAWMAETTLGRV--MFNELLPLGYPFVNKQMHKKVQ---AAIINDLAERYPMIVVA 710

Query:   813 EYIEEV 818
             + ++++
Sbjct:   711 QTVDKL 716

 Score = 37 (18.1 bits), Expect = 1.8e-22, Sum P(5) = 1.8e-22
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query:  1071 DKVSQPLREQILSHQD 1086
             DK+S+  R ++  H+D
Sbjct:  1078 DKISKRQRLRVFKHED 1093


>TIGR_CMR|CBU_0232 [details] [associations]
            symbol:CBU_0232 "DNA-directed RNA polymerase beta'
            subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
            SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
            PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
        Length = 1414

 Score = 191 (72.3 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 45/123 (36%), Positives = 69/123 (56%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             +L NR P+LH+L I A    ++  +  + +  VCT YNADFDGD+M VH+P T EA+ EA
Sbjct:   421 ILLNRAPTLHRLGIQAFEPVLVEGKAIQLHPLVCTAYNADFDGDQMAVHVPLTLEAQLEA 480

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTM 464
                           + LM + +N++ P NGE +I  +QD + G Y +T ++    + + M
Sbjct:   481 --------------RSLMMSTNNVLHPANGEPIIVPSQDVVLGLYYIT-RDRVNAKGEGM 525

Query:   465 RIA 467
             R A
Sbjct:   526 RFA 528

 Score = 125 (49.1 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query:   618 SFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV-QYDMSFDAA 674
             +F  GL   ++F  T G R+GL DTA+KTA +GY+ RRLV   +DL V ++D   +A+
Sbjct:   762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTEHDCGTEAS 819

 Score = 105 (42.0 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 18/26 (69%), Positives = 23/26 (88%)

Query:  1120 AVGALAAQSIGEPGTQMTLKTFHFAG 1145
             A+G +AAQSIGEPGTQ+T++TFH  G
Sbjct:   914 AIGVVAAQSIGEPGTQLTMRTFHIGG 939

 Score = 92 (37.4 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 34/132 (25%), Positives = 63/132 (47%)

Query:  1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHP---M 1319
             + +V   Y ++GVK +  +   + + + +   + T   +  L+          R     +
Sbjct:  1233 VNEVQEVYRLQGVKINDKHIEVIVRQM-LRKVKITQPGDTDLLQNEQVERTRVREENEKI 1291

Query:  1320 LVADLMTSKGE--VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSEC 1377
             +  D   +K E  +LGIT+  LA   ES ++ ASF+ T+  L  A+  G+ D + G+ E 
Sbjct:  1292 IKKDGTVAKVEPILLGITKASLAT--ESFISAASFQETTRVLTAASVAGKRDDLRGLKEN 1349

Query:  1378 IIMGLPMNVGTG 1389
             +I+G  +  GTG
Sbjct:  1350 VIVGRLIPAGTG 1361

 Score = 71 (30.1 bits), Expect = 1.9e-15, Sum P(5) = 1.9e-15
 Identities = 16/47 (34%), Positives = 28/47 (59%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIA 68
             LM + +N++ P NGE +I  +QD + G Y +T ++    + + MR A
Sbjct:   483 LMMSTNNVLHPANGEPIIVPSQDVVLGLYYIT-RDRVNAKGEGMRFA 528

 Score = 66 (28.3 bits), Expect = 3.0e-19, Sum P(6) = 3.0e-19
 Identities = 52/242 (21%), Positives = 105/242 (43%)

Query:   819 FVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSK 878
             F+P+ +F L K D   + +  +   +  I     +TR I+G L      F   +PKD++ 
Sbjct:  1100 FLPEGTF-LTKEDGTTVNIGDV---LARIPQETSKTRDITGGLPRVADLFEARRPKDAA- 1154

Query:   879 SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKG 938
                +++  +         KG     R +I   D  G T  +L+ +  ++         KG
Sbjct:  1155 -ILAEISGVVSFGKDTKDKG-----RLIITAPD--GTTHEELIPKWRHVSVFEGETVEKG 1206

Query:   939 --VKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRH-PMLVADLM-----T 990
               +     + +++ + LG+ A  + I+ E++ V    G+ I+ +H  ++V  ++     T
Sbjct:  1207 EVIADGPRDPHDILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKIT 1266

Query:   991 SKGEV-LGNGTPVELKRLLDD---IIAKNSS--RSDPSLSAQEILALSNETLDSKEFLQD 1044
               G+  L     VE  R+ ++   II K+ +  + +P L      +L+ E+  S    Q+
Sbjct:  1267 QPGDTDLLQNEQVERTRVREENEKIIKKDGTVAKVEPILLGITKASLATESFISAASFQE 1326

Query:  1045 TS 1046
             T+
Sbjct:  1327 TT 1328

 Score = 59 (25.8 bits), Expect = 7.7e-25, Sum P(7) = 7.7e-25
 Identities = 37/179 (20%), Positives = 77/179 (43%)

Query:  1155 FVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSK 1214
             F+P+ +F L K D   + +  +   +  I     +TR I+G L      F   +PKD++ 
Sbjct:  1100 FLPEGTF-LTKEDGTTVNIGDV---LARIPQETSKTRDITGGLPRVADLFEARRPKDAA- 1154

Query:  1215 SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKG 1274
                +++  +         KG     R +I   D  G T  +L+ +  ++         KG
Sbjct:  1155 -ILAEISGVVSFGKDTKDKG-----RLIITAPD--GTTHEELIPKWRHVSVFEGETVEKG 1206

Query:  1275 --VKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 1331
               +     + +++ + LG+ A  + I+ E++ V    G+ I+ +H  ++   M  K ++
Sbjct:  1207 EVIADGPRDPHDILRLLGVNALANYIVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKI 1265

 Score = 47 (21.6 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query:   574 RDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD-VTPGQ 612
             R+ G    V    +L  M   Y  + G SIGI D V P Q
Sbjct:   610 RNLGLKTTVIFADKLMYMGFHYATHSGVSIGINDLVVPDQ 649

 Score = 46 (21.3 bits), Expect = 2.7e-17, Sum P(6) = 2.7e-17
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTG 700
             A+  G+ D + G+ E +I+G  +  GTG
Sbjct:  1334 ASVAGKRDDLRGLKENVIVGRLIPAGTG 1361

 Score = 45 (20.9 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 20/51 (39%), Positives = 26/51 (50%)

Query:   313 SKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKL 356
             +KP  +ILT L V P  +RP V  D      SD ND+   + NR   L +L
Sbjct:   232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282

 Score = 44 (20.5 bits), Expect = 4.2e-28, Sum P(7) = 4.2e-28
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI Y +
Sbjct:    85 CEKCGVEVTLAKVRRERMGHIELASPVAHIWYLK 118

 Score = 38 (18.4 bits), Expect = 1.7e-21, Sum P(7) = 1.7e-21
 Identities = 31/148 (20%), Positives = 62/148 (41%)

Query:   678 QTDCISGVSECIIMGLPMNVGTG--LIKLLQAVPRSEP---VPRTLLFDNPEFHF-PQVY 731
             QTD ++G+S  +I        +G  L  +++ V +++    +P   +   P  +F P+  
Sbjct:  1049 QTDELTGLSSIVITSTKQRSASGKELRPMVKLVDKNDDDLFLPGGKV---PAHYFLPEGT 1105

Query:   732 YERRRDYSVKVTASVKVTLELWNPGDYKLSQD---GVPRIKEIINASRNISTPIITAY-- 786
             +  + D +      V   +    P +   ++D   G+PR+ ++  A R     I+     
Sbjct:  1106 FLTKEDGTTVNIGDVLARI----PQETSKTRDITGGLPRVADLFEARRPKDAAILAEISG 1161

Query:   787 ---LDKDTDLDYARIVKGRLERTTLGEV 811
                  KDT  D  R++    + TT  E+
Sbjct:  1162 VVSFGKDTK-DKGRLIITAPDGTTHEEL 1188

 Score = 38 (18.4 bits), Expect = 4.9e-08, Sum P(4) = 4.9e-08
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query:  1341 KMKESVLNLASFENTSDHLFDAA 1363
             ++KE +LN A     SD L + A
Sbjct:   551 RIKEGILNEAGEIEESDRLVNTA 573

 Score = 37 (18.1 bits), Expect = 7.4e-19, Sum P(6) = 7.4e-19
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query:   695 MNVGTGLIKLLQAVPRSEPVPRTLLFDNP 723
             +N   G I L Q VP+  P     L D P
Sbjct:   570 VNTAAGRILLWQIVPKGLPFA---LVDQP 595

 Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(4) = 6.2e-08
 Identities = 11/29 (37%), Positives = 13/29 (44%)

Query:  1384 MNVGTGLIKLLQAVPRSEPVPRTLLFDNP 1412
             +N   G I L Q VP+  P     L D P
Sbjct:   570 VNTAAGRILLWQIVPKGLPFA---LVDQP 595


>TIGR_CMR|SO_0225 [details] [associations]
            symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
            species:211586 "Shewanella oneidensis MR-1" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
            SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
            PATRIC:23520143 Uniprot:Q8EK73
        Length = 1405

 Score = 187 (70.9 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 46/135 (34%), Positives = 73/135 (54%)

Query:   334 VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVH 393
             V+ ++  ++ V+L NR P+LH+L I A    ++  +  + +  VC  YNADFDGD+M VH
Sbjct:   411 VLDEVIREHPVML-NRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVH 469

Query:   394 LPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 453
             +P T EA+ EA              + LM + +N+++P NGE +I  +QD + G Y  T 
Sbjct:   470 VPLTLEAQLEA--------------RALMMSTNNILSPANGEPVITPSQDVVLGLYY-TS 514

Query:   454 KNAFFNRAQTMRIAS 468
             +     R + M   S
Sbjct:   515 RERINGRGEGMYFMS 529

 Score = 121 (47.7 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query:   618 SFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             +F  GL   ++F  T G R+GL DTA+KTA +GY+ RRLV   +DL V  D
Sbjct:   762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVIED 812

 Score = 106 (42.4 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             I    A+G +AAQSIGEPGTQ+T++TFH  G
Sbjct:   909 INHGEAIGVVAAQSIGEPGTQLTMRTFHIGG 939

 Score = 104 (41.7 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 26/64 (40%), Positives = 41/64 (64%)

Query:  1326 TSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMN 1385
             T + E+LGIT+  LA   ES ++ ASF+ T+  L +AA  G++D + G+ E +I+G  + 
Sbjct:  1301 TFERELLGITKASLAT--ESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIP 1358

Query:  1386 VGTG 1389
              GTG
Sbjct:  1359 AGTG 1362

 Score = 71 (30.1 bits), Expect = 4.9e-16, Sum P(5) = 4.9e-16
 Identities = 19/65 (29%), Positives = 31/65 (47%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVFF 79
             + LM + +N+++P NGE +I  +QD + G Y  T +     R + M   S      K + 
Sbjct:   481 RALMMSTNNILSPANGEPVITPSQDVVLGLYY-TSRERINGRGEGMYFMSVAEV-EKAYA 538

Query:    80 RGLIE 84
              G  E
Sbjct:   539 TGAAE 543

 Score = 54 (24.1 bits), Expect = 1.3e-22, Sum P(5) = 1.3e-22
 Identities = 44/206 (21%), Positives = 86/206 (41%)

Query:   853 RTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI-KGVQGINRAVIHEED 911
             +TR I+G L      F   KPK+ +         + ++  ++   K  +G  R VI   D
Sbjct:  1130 KTRDITGGLPRVADLFEARKPKEPAI--------LAEISGTISFGKETKGKRRLVITPAD 1181

Query:   912 VEGVTKYKLLV-EGDNLRDVMATYGVKG--VKCSSNNTYEVYKTLGIEAARSTIMTEIKL 968
               G  +Y+ ++ +  NL         +G  +       +++ +  GI    + I+ E++ 
Sbjct:  1182 --GGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQD 1239

Query:   969 VMENHGMSIDFRH------PMLVADLMTSKG--EVLGNGTPVELKRLLDDIIAKNSSRSD 1020
             V    G+ I+ +H       ML   ++T+ G  E L  G  VE+ R+             
Sbjct:  1240 VYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSEFL-EGEQVEVSRVKIANRELVEQGKV 1298

Query:  1021 PSLSAQEILALSNETLDSKEFLQDTS 1046
             P+   +E+L ++  +L ++ F+   S
Sbjct:  1299 PATFERELLGITKASLATESFISAAS 1324

 Score = 52 (23.4 bits), Expect = 1.8e-16, Sum P(4) = 1.8e-16
 Identities = 11/29 (37%), Positives = 19/29 (65%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G++D + G+ E +I+G  +  GTG
Sbjct:  1334 EAAVGGKSDNLRGLKENVIVGRLIPAGTG 1362

 Score = 44 (20.5 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 30/144 (20%), Positives = 60/144 (41%)

Query:  1189 RTRGISGHLTVSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVI-KGVQGINRAVIHEED 1247
             +TR I+G L      F   KPK+ +         + ++  ++   K  +G  R VI   D
Sbjct:  1130 KTRDITGGLPRVADLFEARKPKEPAI--------LAEISGTISFGKETKGKRRLVITPAD 1181

Query:  1248 VEGVTKYKLLV-EGDNLRDVMATYGVKG--VKCSSNNTYEVYKTLGIEAARSTIMTEIKL 1304
               G  +Y+ ++ +  NL         +G  +       +++ +  GI    + I+ E++ 
Sbjct:  1182 --GGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQD 1239

Query:  1305 VMENHGMSIDFRHPMLVADLMTSK 1328
             V    G+ I+ +H  ++   M  K
Sbjct:  1240 VYRLQGVKINDKHIEVIIRQMLRK 1263

 Score = 43 (20.2 bits), Expect = 6.9e-28, Sum P(6) = 6.9e-28
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI + +
Sbjct:    85 CEKCGVEVTQTKVRRERMGHIELASPVAHIWFLK 118

 Score = 42 (19.8 bits), Expect = 3.1e-13, Sum P(6) = 3.1e-13
 Identities = 35/122 (28%), Positives = 54/122 (44%)

Query:   259 DLLAEYNEAVKFNPEIEAHKKFGLIQTLN-PLEVLQLFEAIPLEDIP---------LLLM 308
             D L EY +  +F  ++ A     L++ ++   E+ Q+ E +P  +           L LM
Sbjct:   167 DALEEYGD--EFEAKMGAEAVLELLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLM 224

Query:   309 NA---ELSKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKLSI 358
              A     +KP  +IL  L V P  +RP V  D      SD ND+   + NR   L +L  
Sbjct:   225 EAFHTSGNKPEWMILKVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLD 284

Query:   359 MA 360
             +A
Sbjct:   285 LA 286

 Score = 38 (18.4 bits), Expect = 5.1e-21, Sum P(5) = 5.1e-21
 Identities = 30/140 (21%), Positives = 56/140 (40%)

Query:   668 DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPEFHF 727
             DM        QTD ++G+S  +I+ +      G  K ++ + R      + L   P    
Sbjct:  1039 DMIDGVTMTRQTDELTGLSSIVILDVGQRGSAG--KEMRPMIRLVGADGSDLMI-PGTEV 1095

Query:   728 PQVYY-ERRRDYSVKVTASVKVTLELWN-PGDYKLSQD---GVPRIKEIINASRNISTPI 782
             P  Y+       ++   A + V   L   P +   ++D   G+PR+ ++  A R    P 
Sbjct:  1096 PAQYFLPGSAIVNLDDNAQIAVGDALARIPQESSKTRDITGGLPRVADLFEA-RKPKEPA 1154

Query:   783 ITAYLDKDTDLDYARIVKGR 802
             I A +     + + +  KG+
Sbjct:  1155 ILAEISGT--ISFGKETKGK 1172


>TIGR_CMR|CPS_4768 [details] [associations]
            symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
            subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
            SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
            KEGG:cps:CPS_4768 PATRIC:21472353
            BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
        Length = 1406

 Score = 190 (71.9 bits), Expect = 7.1e-28, Sum P(5) = 7.1e-28
 Identities = 44/120 (36%), Positives = 68/120 (56%)

Query:   334 VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVH 393
             V+ ++  ++ V+L NR P+LH+L I A    ++  +    +  VC  YNADFDGD+M VH
Sbjct:   411 VLDEVIREHPVML-NRAPTLHRLGIQAFEPVLIEGKAIHLHPLVCAAYNADFDGDQMAVH 469

Query:   394 LPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 453
             +P T EA+ EA              + LM + +N++ P NGE +I  +QD + G Y LT+
Sbjct:   470 VPLTIEAQMEA--------------RTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515

 Score = 127 (49.8 bits), Expect = 7.1e-28, Sum P(5) = 7.1e-28
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             ++ +F  GLT  ++F  T G R+GL DTA+KTA +GY+ RRLV   +DL V
Sbjct:   759 IKANFREGLTVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVV 809

 Score = 107 (42.7 bits), Expect = 7.1e-28, Sum P(5) = 7.1e-28
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             I    A+G +AAQSIGEPGTQ+T++TFH  G
Sbjct:   909 INQGEAIGVVAAQSIGEPGTQLTMRTFHIGG 939

 Score = 97 (39.2 bits), Expect = 7.1e-28, Sum P(5) = 7.1e-28
 Identities = 36/137 (26%), Positives = 70/137 (51%)

Query:  1263 LRDVMATYGVKGVKCSSNNTYEVYKTLG-----IEAARSTIM----TEIKLV-MENHGMS 1312
             + +V   Y ++GVK +  +   + + +      ++A  ST +     E+  V + N  + 
Sbjct:  1233 VNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEILDAGDSTFLKGEQVEVARVNISNRELE 1292

Query:  1313 IDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCIS 1372
              + + P   A+    + +++GIT+  LA   ES ++ ASF+ T+  L +AA  G+ D + 
Sbjct:  1293 AEGKQP---AEY---EMQMMGITKASLAT--ESFISAASFQETTRVLTEAAVAGKKDGLR 1344

Query:  1373 GVSECIIMGLPMNVGTG 1389
             G+ E +I+G  +  GTG
Sbjct:  1345 GLKENVIVGRLIPAGTG 1361

 Score = 74 (31.1 bits), Expect = 1.9e-16, Sum P(4) = 1.9e-16
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 54
             + LM + +N++ P NGE +I  +QD + G Y LT+
Sbjct:   481 RTLMMSTNNVLAPANGEPIIVPSQDVVLGLYYLTR 515

 Score = 63 (27.2 bits), Expect = 3.1e-19, Sum P(5) = 3.1e-19
 Identities = 22/120 (18%), Positives = 53/120 (44%)

Query:   936 VKG--VKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
             +KG  +     + +++ +  G+    + I+ E++ V    G+ I+ +H  ++   M  K 
Sbjct:  1204 IKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIRKC 1263

Query:   994 EVLGNGTPVELKRLLDDIIAKNSSRSD-------PSLSAQEILALSNETLDSKEFLQDTS 1046
             E+L  G    LK    ++   N S  +       P+    +++ ++  +L ++ F+   S
Sbjct:  1264 EILDAGDSTFLKGEQVEVARVNISNRELEAEGKQPAEYEMQMMGITKASLATESFISAAS 1323

 Score = 55 (24.4 bits), Expect = 1.2e-22, Sum P(5) = 1.2e-22
 Identities = 36/163 (22%), Positives = 70/163 (42%)

Query:   665 VQY-DMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNP 723
             VQ+ D++       QTD ++G+S  +I        TG  ++  A+   +   + ++    
Sbjct:  1035 VQFVDLADGVTMVRQTDELTGLSSIVITDAAQRNATGK-EMRPALKLVDAKGKEVMIAGT 1093

Query:   724 EFHFPQVYY-ERRRDYSVKVTASVKVTLELWN-PGDYKLSQD---GVPRIKEIINASRNI 778
             E   P +YY       +++  A V V   L   P     ++D   G+PR+ ++  A R  
Sbjct:  1094 EI--PALYYLPGNAIVNLEDGADVGVGDALARIPQASSKTRDITGGLPRVADLFEA-RKP 1150

Query:   779 STPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVP 821
               P I A  +K   + + +  KG++ R  + +    + E  +P
Sbjct:  1151 KLPAILA--EKTGVVAFGKETKGKV-RLLITQPSGEVYEEMIP 1190

 Score = 53 (23.7 bits), Expect = 1.9e-23, Sum P(5) = 1.9e-23
 Identities = 13/63 (20%), Positives = 31/63 (49%)

Query:  1272 VKG--VKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 1329
             +KG  +     + +++ +  G+    + I+ E++ V    G+ I+ +H  ++   M  K 
Sbjct:  1204 IKGEVIADGPESPHDILRLRGVAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIRKC 1263

Query:  1330 EVL 1332
             E+L
Sbjct:  1264 EIL 1266

 Score = 51 (23.0 bits), Expect = 5.4e-17, Sum P(4) = 5.4e-17
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1333 EAAVAGKKDGLRGLKENVIVGRLIPAGTG 1361

 Score = 40 (19.1 bits), Expect = 7.1e-28, Sum P(5) = 7.1e-28
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI + +
Sbjct:    85 CEKCGVEVTLTKVRRDRMGHIELASPVAHIWFLK 118

 Score = 39 (18.8 bits), Expect = 1.6e-12, Sum P(5) = 1.6e-12
 Identities = 35/119 (29%), Positives = 56/119 (47%)

Query:   259 DLLAEYNEAVKFNPEIEAHKKFGLIQTLN-PLEVLQLFEAIP-------LEDIP--LLLM 308
             D L E+ +  +F+  + A     L+Q ++   EV Q+ E +P        + I   L LM
Sbjct:   167 DALEEHGD--EFDALMGAEAVLALLQQIDLDGEVAQMREELPEIGSETKRKKITKRLKLM 224

Query:   309 NAELS---KPSDLILTRL-LVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKL 356
              A  +   KP  +I+  L ++PP+ +RP V  D      SD ND+   + NR   L +L
Sbjct:   225 EAFAASGNKPEWMIMNVLPILPPD-LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 282


>TIGR_CMR|DET_0604 [details] [associations]
            symbol:DET_0604 "DNA-directed RNA polymerase, beta'
            subunit" species:243164 "Dehalococcoides ethenogenes 195"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
            SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
            KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
            Uniprot:Q3Z8V3
        Length = 1295

 Score = 165 (63.1 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
 Identities = 41/119 (34%), Positives = 68/119 (57%)

Query:   334 VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVH 393
             ++ ++  +  V+L NR P+LH+LSI A    ++     R +  VC+ +NADFDGD+M VH
Sbjct:   467 ILEEVVKERPVML-NRAPTLHRLSIQAFEPVLIDGSALRLHPLVCSAFNADFDGDQMAVH 525

Query:   394 LPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
             +P ++ A  EA  ++  LSI  H          N++ P +GE +++ + D + G Y LT
Sbjct:   526 VPLSKAAVKEARETM--LSI--H----------NMMLPSSGEPVVSPSLDMVFGCYYLT 570

 Score = 120 (47.3 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
 Identities = 29/57 (50%), Positives = 35/57 (61%)

Query:  1098 PSACKAE--ACREKYVR-----AQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEV 1147
             P  C+A    CR  Y R       ++  TAVG +AAQSIGEPGTQ+TL+TFH  G V
Sbjct:   911 PLTCEATHGMCRRCYGRDLGRVRLVDMNTAVGIIAAQSIGEPGTQLTLRTFHTGGVV 967

 Score = 118 (46.6 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
 Identities = 21/51 (41%), Positives = 35/51 (68%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             +++S   GLT  E+F  T G R+GL DTA++T+ +GY+ RRL+   +D+ +
Sbjct:   786 IKSSLREGLTTLEYFISTHGARKGLADTALRTSGSGYLTRRLIDVTQDVII 836

 Score = 113 (44.8 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
 Identities = 54/200 (27%), Positives = 97/200 (48%)

Query:  1193 ISGHLTVSGHSFLILKPKDSSK---SFNSKMYQMKQLLPSVVIKGVQGINRAVIHEEDVE 1249
             ++G ++V G S + +K  +S +   +  + M Q+K      V  G Q +    I+ +D+ 
Sbjct:  1068 VAGEVSVDG-SLITIKYSESEEREYAIPAAM-QIKVKTGDSVRAGQQ-LTDGSINPQDIL 1124

Query:  1250 GVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENH 1309
              +   +  V+   + +V   Y  +GV  +  +   + + + I+  R     +  LV    
Sbjct:  1125 SILG-RDAVQKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIKV-RIDSSGDTDLVP--- 1179

Query:  1310 GMSID-FRHPMLVADLMTSKGE-------VLGITRHGLAKMKESVLNLASFENTSDHLFD 1361
             G  +D FR+  + A ++   GE       ++GITR  L+   ES L  ASF+ T+  L D
Sbjct:  1180 GELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRASLST--ESWLAAASFQETTRVLTD 1237

Query:  1362 AAFYGQTDCISGVSECIIMG 1381
             AA YG+ D +SG+ E +I+G
Sbjct:  1238 AAIYGKVDKLSGLKENVIIG 1257

 Score = 60 (26.2 bits), Expect = 6.0e-15, Sum P(4) = 6.0e-15
 Identities = 11/21 (52%), Positives = 16/21 (76%)

Query:   672 DAAFYGQTDCISGVSECIIMG 692
             DAA YG+ D +SG+ E +I+G
Sbjct:  1237 DAAIYGKVDKLSGLKENVIIG 1257

 Score = 52 (23.4 bits), Expect = 2.2e-16, Sum P(4) = 2.2e-16
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query:    23 MANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             M +  N++ P +GE +++ + D + G Y LT
Sbjct:   540 MLSIHNMMLPSSGEPVVSPSLDMVFGCYYLT 570

 Score = 44 (20.5 bits), Expect = 7.4e-28, Sum P(5) = 7.4e-28
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI + R
Sbjct:    75 CDKCGVEIARAKVRRERMGHIELACPVGHIWFTR 108

 Score = 43 (20.2 bits), Expect = 2.0e-15, Sum P(5) = 2.0e-15
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query:   313 SKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSL-HKLSIMA 360
             +KP  +I+T L V P  +RP V  D      SD ND+   + NR   L H + I A
Sbjct:   288 NKPEWMIMTVLPVLPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLQHLMEIGA 343

 Score = 38 (18.4 bits), Expect = 1.2e-07, Sum P(5) = 1.2e-07
 Identities = 17/60 (28%), Positives = 27/60 (45%)

Query:   759 KLSQDGVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEV 818
             KLSQ G+PR       +  +  P +   L +D      +  +  +ER    EV + +EEV
Sbjct:   418 KLSQCGLPR-----RMALELFKPFVMHRLVRDGLAPNIKSARRLVERAR-PEVYDILEEV 471

 Score = 37 (18.1 bits), Expect = 1.2e-12, Sum P(4) = 1.2e-12
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query:  1002 VELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSKEFLQDTSE 1047
             +++K    D +      +D S++ Q+IL++       K  +++  +
Sbjct:  1097 MQIKVKTGDSVRAGQQLTDGSINPQDILSILGRDAVQKYLVEEVQK 1142

 Score = 37 (18.1 bits), Expect = 9.7e-08, Sum P(3) = 9.7e-08
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query:    28 NLVTPRNGELLIAATQD 44
             N+V P+ GE+++   ++
Sbjct:   873 NVVHPQTGEIIVGNNEE 889

 Score = 37 (18.1 bits), Expect = 1.5e-07, Sum P(5) = 1.5e-07
 Identities = 5/17 (29%), Positives = 12/17 (70%)

Query:   427 NLVTPRNGELLIAATQD 443
             N+V P+ GE+++   ++
Sbjct:   873 NVVHPQTGEIIVGNNEE 889


>UNIPROTKB|P0A8T7 [details] [associations]
            symbol:rpoC "RNA polymerase, beta' subunit" species:83333
            "Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0016020 "membrane" evidence=IDA] [GO:0016779
            "nucleotidyltransferase activity" evidence=IEA] [GO:0016740
            "transferase activity" evidence=IEA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
            EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
            GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
            Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
            GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
            EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
            EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
            PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
            SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
            PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
            EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
            EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
            GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
            PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
            BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
            BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
            Genevestigator:P0A8T7 Uniprot:P0A8T7
        Length = 1407

 Score = 192 (72.6 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
 Identities = 42/109 (38%), Positives = 63/109 (57%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             VL NR P+LH+L I A    ++  +  + +  VC  YNADFDGD+M VH+P T EA+ EA
Sbjct:   421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 453
                           + LM + +N+++P NGE +I  +QD + G Y +T+
Sbjct:   481 --------------RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515

 Score = 123 (48.4 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
 Identities = 25/51 (49%), Positives = 33/51 (64%)

Query:   618 SFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             +F  GL   ++F  T G R+GL DTA+KTA +GY+ RRLV   +DL V  D
Sbjct:   762 NFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDLVVTED 812

 Score = 108 (43.1 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query:  1115 IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             I    A+G +AAQSIGEPGTQ+T++TFH  G
Sbjct:   909 INKGEAIGVIAAQSIGEPGTQLTMRTFHIGG 939

 Score = 98 (39.6 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
 Identities = 25/64 (39%), Positives = 39/64 (60%)

Query:  1326 TSKGEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMN 1385
             T   ++LGIT+  LA   ES ++ ASF+ T+  L +AA  G+ D + G+ E +I+G  + 
Sbjct:  1301 TYSRDLLGITKASLAT--ESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIP 1358

Query:  1386 VGTG 1389
              GTG
Sbjct:  1359 AGTG 1362

 Score = 74 (31.1 bits), Expect = 3.1e-16, Sum P(4) = 3.1e-16
 Identities = 13/35 (37%), Positives = 24/35 (68%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 54
             + LM + +N+++P NGE +I  +QD + G Y +T+
Sbjct:   481 RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTR 515

 Score = 50 (22.7 bits), Expect = 1.4e-16, Sum P(4) = 1.4e-16
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1334 EAAVAGKRDELRGLKENVIVGRLIPAGTG 1362

 Score = 46 (21.3 bits), Expect = 6.8e-13, Sum P(5) = 6.8e-13
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query:   313 SKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKLSIMA 360
             +KP  +ILT L V P  +RP V  D      SD ND+   + NR   L +L  +A
Sbjct:   232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLA 286

 Score = 40 (19.1 bits), Expect = 7.8e-13, Sum P(4) = 7.8e-13
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query:     9 LTLYYATRNCWQVLMANKSNLVT-PRNGELL 38
             L LYY TR+C  V    +  ++T P+  E L
Sbjct:   508 LGLYYMTRDC--VNAKGEGMVLTGPKEAERL 536

 Score = 39 (18.8 bits), Expect = 8.8e-28, Sum P(5) = 8.8e-28
 Identities = 9/34 (26%), Positives = 15/34 (44%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  P  HI + +
Sbjct:    85 CEKCGVEVTQTKVRRERMGHIELASPTAHIWFLK 118

 Score = 37 (18.1 bits), Expect = 1.2e-21, Sum P(5) = 1.2e-21
 Identities = 7/35 (20%), Positives = 18/35 (51%)

Query:  1346 VLNLASFENTSDHLFDAAFYGQTDCISGVSECIIM 1380
             +  ++ F   +D +       QTD ++G+S  +++
Sbjct:  1028 ITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVL 1062


>UNIPROTKB|Q9KV29 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 185 (70.2 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             VL NR P+LH+L I A    ++  +  + +  VC  YNADFDGD+M VH+P T EA+ EA
Sbjct:   421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQK 454
                           + LM + +N+++P +G+ +I  +QD + G Y +T++
Sbjct:   481 --------------RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 118 (46.6 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query:   618 SFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV-QYD 668
             +F  GL   ++F  T G R+GL DTA+KTA +GY+ RRLV   +D+ V ++D
Sbjct:   762 NFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHD 813

 Score = 110 (43.8 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query:  1101 CKAEACREKYVRAQ-IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             C A+       R   +    AVG +AAQSIGEPGTQ+T++TFH  G
Sbjct:   894 CCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939

 Score = 101 (40.6 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query:  1330 EVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
             E+LGIT+  LA   ES ++ ASF+ T+  L +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1304 ELLGITKASLAT--ESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361

 Score = 67 (28.6 bits), Expect = 1.6e-15, Sum P(5) = 1.6e-15
 Identities = 11/36 (30%), Positives = 25/36 (69%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQK 55
             + LM + +N+++P +G+ +I  +QD + G Y +T++
Sbjct:   481 RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 53 (23.7 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
 Identities = 22/107 (20%), Positives = 44/107 (41%)

Query:   947 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGT----PV 1002
             +++ +  GI A  + I  E++ V    G+ I+ +H   +   M  K  +   G     P 
Sbjct:  1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPG 1276

Query:  1003 ELKRLLDDIIAKNS---SRSDPSLSAQEILALSNETLDSKEFLQDTS 1046
             E        IA         +P+   +E+L ++  +L ++ F+   S
Sbjct:  1277 ETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAAS 1323

 Score = 51 (23.0 bits), Expect = 5.7e-16, Sum P(4) = 5.7e-16
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1333 EAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361

 Score = 46 (21.3 bits), Expect = 1.3e-13, Sum P(6) = 1.3e-13
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query:   313 SKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKLSIMA 360
             +KP  +ILT L V P  +RP V  D      SD ND+   + NR   L +L  +A
Sbjct:   232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELA 286

 Score = 45 (20.9 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query:  1249 EGVTKYKLLVEG-DNLRDVMATYGVKGVKCS-SNNTYEVYKTLGIEAARSTIMTEIKLVM 1306
             E + +  ++ +G ++  D++   G+  V    +N   EVY+  G++     I T ++ ++
Sbjct:  1201 ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML 1260

 Score = 44 (20.5 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI + +
Sbjct:    85 CEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLK 118


>TIGR_CMR|VC_0329 [details] [associations]
            symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
            species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
            GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
            RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
            PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
            PATRIC:20079715 Uniprot:Q9KV29
        Length = 1401

 Score = 185 (70.2 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 40/110 (36%), Positives = 64/110 (58%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             VL NR P+LH+L I A    ++  +  + +  VC  YNADFDGD+M VH+P T EA+ EA
Sbjct:   421 VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQK 454
                           + LM + +N+++P +G+ +I  +QD + G Y +T++
Sbjct:   481 --------------RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 118 (46.6 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 24/52 (46%), Positives = 35/52 (67%)

Query:   618 SFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV-QYD 668
             +F  GL   ++F  T G R+GL DTA+KTA +GY+ RRLV   +D+ V ++D
Sbjct:   762 NFKEGLNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHD 813

 Score = 110 (43.8 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 22/46 (47%), Positives = 28/46 (60%)

Query:  1101 CKAEACREKYVRAQ-IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             C A+       R   +    AVG +AAQSIGEPGTQ+T++TFH  G
Sbjct:   894 CCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGG 939

 Score = 101 (40.6 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 25/60 (41%), Positives = 38/60 (63%)

Query:  1330 EVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
             E+LGIT+  LA   ES ++ ASF+ T+  L +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1304 ELLGITKASLAT--ESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361

 Score = 67 (28.6 bits), Expect = 1.6e-15, Sum P(5) = 1.6e-15
 Identities = 11/36 (30%), Positives = 25/36 (69%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQK 55
             + LM + +N+++P +G+ +I  +QD + G Y +T++
Sbjct:   481 RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRE 516

 Score = 53 (23.7 bits), Expect = 3.6e-16, Sum P(4) = 3.6e-16
 Identities = 22/107 (20%), Positives = 44/107 (41%)

Query:   947 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGT----PV 1002
             +++ +  GI A  + I  E++ V    G+ I+ +H   +   M  K  +   G     P 
Sbjct:  1217 HDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSEFLPG 1276

Query:  1003 ELKRLLDDIIAKNS---SRSDPSLSAQEILALSNETLDSKEFLQDTS 1046
             E        IA         +P+   +E+L ++  +L ++ F+   S
Sbjct:  1277 ETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAAS 1323

 Score = 51 (23.0 bits), Expect = 5.7e-16, Sum P(4) = 5.7e-16
 Identities = 11/29 (37%), Positives = 18/29 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G+ D + G+ E +I+G  +  GTG
Sbjct:  1333 EAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361

 Score = 46 (21.3 bits), Expect = 1.3e-13, Sum P(6) = 1.3e-13
 Identities = 21/55 (38%), Positives = 28/55 (50%)

Query:   313 SKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKLSIMA 360
             +KP  +ILT L V P  +RP V  D      SD ND+   + NR   L +L  +A
Sbjct:   232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELA 286

 Score = 45 (20.9 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 12/60 (20%), Positives = 30/60 (50%)

Query:  1249 EGVTKYKLLVEG-DNLRDVMATYGVKGVKCS-SNNTYEVYKTLGIEAARSTIMTEIKLVM 1306
             E + +  ++ +G ++  D++   G+  V    +N   EVY+  G++     I T ++ ++
Sbjct:  1201 ERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQML 1260

 Score = 44 (20.5 bits), Expect = 1.1e-27, Sum P(6) = 1.1e-27
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI + +
Sbjct:    85 CEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLK 118


>UNIPROTKB|H9L2Z0 [details] [associations]
            symbol:H9L2Z0 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036063 Uniprot:H9L2Z0
        Length = 517

 Score = 203 (76.5 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query:   607 DVTPGQG-FVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  G FV   F +G+ P+EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   330 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 389

Query:   666 QYDMS 670
             QYD++
Sbjct:   390 QYDLT 394

 Score = 169 (64.5 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 65/221 (29%), Positives = 99/221 (44%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGY 449
             MN H PQ E  RAEA    + L+           ++  LV P++G+ L    QD +  G 
Sbjct:     1 MNAHFPQNELGRAEA----YTLAF---------TDEQYLV-PKDGKPLPGLIQDHMISGV 46

Query:   450 LLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSL 509
              +T +  FF R Q M +    + D     G IK F      P   ++   +WTGKQ+ S 
Sbjct:    47 SMTIRGCFFTREQYMELVYRGLTDKK---GRIKTF------PPAIMKPQRLWTGKQVVST 97

Query:   510 ILK---PNRDCPVNANLKTK--GRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGG 564
             +L    P    P+N   K K  G+A+  NE+       VI+R+ ELL G +DK+  GS  
Sbjct:    98 LLINIIPENHVPLNLTGKAKIGGKAWGKNEK-------VIIRSGELLCGVLDKAHFGSSA 150

Query:   565 KANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGI 605
                V +     +G + +   +  L R+ + YL    +  G+
Sbjct:   151 YGLV-HCCYEIYGGETSGKVLPCLGRLFTAYLQLYQYMSGV 190

 Score = 72 (30.4 bits), Expect = 1.4e-27, Sum P(3) = 1.4e-27
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEP 1132
             K+ R+  +P  AVG LAAQSIGEP
Sbjct:   493 KWQRSLCDPGEAVGLLAAQSIGEP 516

 Score = 60 (26.2 bits), Expect = 2.3e-16, Sum P(3) = 2.3e-16
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query:    30 VTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRK 76
             + P++G+ L    QD +  G  +T +  FF R Q M +    +  +K
Sbjct:    26 LVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKK 72


>UNIPROTKB|H9L2Z1 [details] [associations]
            symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
        Length = 522

 Score = 203 (76.5 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query:   607 DVTPGQG-FVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  G FV   F +G+ P+EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   326 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 385

Query:   666 QYDMS 670
             QYD++
Sbjct:   386 QYDLT 390

 Score = 169 (64.5 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 66/220 (30%), Positives = 98/220 (44%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGY 449
             MN H PQ E  RAEA    + L+           ++  LV P++G+ L    QD +  G 
Sbjct:     1 MNAHFPQNELGRAEA----YTLAF---------TDEQYLV-PKDGKPLPGLIQDHMISGV 46

Query:   450 LLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSL 509
              +T +  FF R Q M +    + D     G IK F      P   ++   +WTGKQ+ S 
Sbjct:    47 SMTIRGCFFTREQYMELVYRGLTDKK---GRIKTF------PPAIMKPQRLWTGKQVVST 97

Query:   510 ILK---PNRDCPVNANLKTK--GRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGG 564
             +L    P    P+N   K K  G+A+  NE+       VI+R+ ELL G +DK+  GS  
Sbjct:    98 LLINIIPENHVPLNLTGKAKIGGKAWGKNEK-------VIIRSGELLCGVLDKAHFGSSA 150

Query:   565 KANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIG 604
                V +     +G + +   +  L R+ + YL    F  G
Sbjct:   151 YGLV-HCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFKRG 189

 Score = 72 (30.4 bits), Expect = 1.5e-27, Sum P(3) = 1.5e-27
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEP 1132
             K+ R+  +P  AVG LAAQSIGEP
Sbjct:   498 KWQRSLCDPGEAVGLLAAQSIGEP 521

 Score = 60 (26.2 bits), Expect = 2.4e-16, Sum P(3) = 2.4e-16
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query:    30 VTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRK 76
             + P++G+ L    QD +  G  +T +  FF R Q M +    +  +K
Sbjct:    26 LVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKK 72


>UNIPROTKB|H9L2Z3 [details] [associations]
            symbol:H9L2Z3 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008811 "chloramphenicol O-acetyltransferase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            InterPro:IPR018372 Pfam:PF00302 Pfam:PF04983 Pfam:PF04998
            Pfam:PF05000 ProDom:PD002660 PROSITE:PS00100 SMART:SM01059
            GO:GO:0005634 Gene3D:3.30.559.10 InterPro:IPR023213 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 PANTHER:PTHR19376:SF11
            GeneTree:ENSGT00550000074861 GO:GO:0008811 EMBL:AADN02030152
            EMBL:AADN02030153 EMBL:AADN02030154 Ensembl:ENSGALT00000036066
            OMA:INKRELH Uniprot:H9L2Z3
        Length = 533

 Score = 203 (76.5 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query:   607 DVTPGQG-FVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  G FV   F +G+ P+EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   334 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 393

Query:   666 QYDMS 670
             QYD++
Sbjct:   394 QYDLT 398

 Score = 169 (64.5 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 64/224 (28%), Positives = 100/224 (44%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGY 449
             MN H PQ E  RAEA    + L+           ++  LV P++G+ L    QD +  G 
Sbjct:     1 MNAHFPQNELGRAEA----YTLAF---------TDEQYLV-PKDGKPLPGLIQDHMISGV 46

Query:   450 LLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSL 509
              +T +  FF R Q M +    + D     G IK F      P   ++   +WTGKQ+ S 
Sbjct:    47 SMTIRGCFFTREQYMELVYRGLTDKK---GRIKTF------PPAIMKPQRLWTGKQVVST 97

Query:   510 ILK---PNRDCPVNANLKTK--GRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGG 564
             +L    P    P+N   K K  G+A+         +S VI+R+ ELL G +DK+  GS  
Sbjct:    98 LLINIIPENHVPLNLTGKAKIGGKAWMRGPA----NSNVIIRSGELLCGVLDKAHFGSSA 153

Query:   565 KANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
                V +     +G + +   +  L R+ + YL    F + + ++
Sbjct:   154 YGLV-HCCYEIYGGETSGKVLPCLGRLFTAYLQLYRFDLNVANM 196

 Score = 72 (30.4 bits), Expect = 1.7e-27, Sum P(3) = 1.7e-27
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEP 1132
             K+ R+  +P  AVG LAAQSIGEP
Sbjct:   509 KWQRSLCDPGEAVGLLAAQSIGEP 532

 Score = 60 (26.2 bits), Expect = 2.8e-16, Sum P(3) = 2.8e-16
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query:    30 VTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRK 76
             + P++G+ L    QD +  G  +T +  FF R Q M +    +  +K
Sbjct:    26 LVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKK 72


>UNIPROTKB|F1LQN7 [details] [associations]
            symbol:Polr1a "DNA-directed RNA polymerase" species:10116
            "Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
            DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
            evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
            InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
            GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
            Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
        Length = 1011

 Score = 295 (108.9 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
 Identities = 97/320 (30%), Positives = 147/320 (45%)

Query:   301 EDIPLLLMNAELSKPSDLILTRLLVPPNCI-RPS---VISDLKSDNDVVLFNRQPSLHKL 356
             ED     ++A  +   + +  +LL P   I +P    V+     + D++L NRQP+LH+ 
Sbjct:   528 EDGSRTALSAVDATQREAVAKQLLTPSTGIPKPQGAKVVCRHVKNGDILLLNRQPTLHRP 587

Query:   357 SIMAHRAKVLPH-RTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHKLSIMA 415
             SI AHRA +LP  +  R +   C  YNADFDGDEMN H PQ+E  RAEA           
Sbjct:   588 SIQAHRAHILPEEKVLRLHYANCKAYNADFDGDEMNAHFPQSELGRAEAY---------- 637

Query:   416 HRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIADTS 475
                 VL       + P++G+ L    QD +  G  +T +  FF R Q M +    + D  
Sbjct:   638 ----VLACTDQQYLVPKDGQPLAGLIQDHMVSGANMTIRGCFFTREQYMELVYRGLTDKV 693

Query:   476 DIC-----GIIKRFSWRSWNPVVFVRTAVIWTGKQIFS-LILKPNRDCPVNANLKTKGRA 529
                      I+K F    W     V T +I    + ++ L L         A +K K R 
Sbjct:   694 GRVKLFPPAILKPFPL--WTGKQVVSTLLINIIPEDYTPLNLTGKAKIGSKAWVKEKPRP 751

Query:   530 YTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLS 589
                 +     +S VI+R  ELL G +DK+  GS     V +     +G + +   +  L+
Sbjct:   752 VPDFDPDSMCESQVIIREGELLCGVLDKAHYGSSAYGLV-HCCYEIYGGETSGRVLTCLA 810

Query:   590 RMTSFYL-MNRGFSIGIGDV 608
             R+ + YL + RGF++G+ D+
Sbjct:   811 RLFTAYLQLYRGFTLGVEDI 830

 Score = 119 (46.9 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
 Identities = 27/78 (34%), Positives = 40/78 (51%)

Query:   110 DPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGYIDLPLPVFHIGYFRCVINI 169
             D    P   GL D  +G    +  C+TC Q+ ++C GH G+IDLPL V++   F  +  +
Sbjct:    61 DSLGNPSADGLYDLALGPADSKEVCSTCVQDFNNCSGHLGHIDLPLTVYNPLLFDKLYLL 120

Query:   170 LQSICKNP---TCARVLL 184
             L+  C N    TC R  +
Sbjct:   121 LRGSCLNCHMLTCPRAAI 138

 Score = 47 (21.6 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
 Identities = 36/136 (26%), Positives = 49/136 (36%)

Query:   206 RKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYN 265
             R  L     +T      CPHC     VV+K    K++   Y     KK    +D  AE  
Sbjct:   209 RSKLVAHFWKTHMAAKRCPHCKTGRSVVRKEHNSKLTIT-YPAMVHKKSG-QKD--AELP 264

Query:   266 EAVKFNPEIEAHKKFGLIQTLNPLEVLQ-LFEAIPLEDIPLLLMNAELS--------KPS 316
             E     P I+   + G    L P    + LF     E   L  + + L          PS
Sbjct:   265 EGAPAAPGID-EAQMGKRGYLTPSSAQEHLFAIWKNEGFFLNYLFSGLDDIGPESSFNPS 323

Query:   317 DLILTRLLVPPNCIRP 332
                L  ++VPP+  RP
Sbjct:   324 MFFLDFIVVPPSRYRP 339

 Score = 37 (18.1 bits), Expect = 2.1e-27, Sum P(4) = 2.1e-27
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query:   607 DVTP-GQGFVQNSFFSGLTP 625
             + TP   GFV   F +G+ P
Sbjct:   970 EFTPRAGGFVTGRFLTGIRP 989


>TIGR_CMR|SPO_3507 [details] [associations]
            symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
            subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
            GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
            SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
            PATRIC:23380483 Uniprot:Q5LMQ6
        Length = 1413

 Score = 185 (70.2 bits), Expect = 3.9e-27, Sum P(5) = 3.9e-27
 Identities = 47/124 (37%), Positives = 68/124 (54%)

Query:   331 RPSV--ISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGD 388
             RP V  I D       VL NR P+LH+L I A    ++  +  + +  VC+ +NADFDGD
Sbjct:   408 RPEVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCSAFNADFDGD 467

Query:   389 EMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGG 448
             +M VH+P + EA+ EA              +VLM + +N+++P NG  +I  +QD I G 
Sbjct:   468 QMAVHVPLSLEAQLEA--------------RVLMMSTNNVLSPANGAPIIVPSQDMILGL 513

Query:   449 YLLT 452
             Y LT
Sbjct:   514 YYLT 517

 Score = 127 (49.8 bits), Expect = 3.9e-27, Sum P(5) = 3.9e-27
 Identities = 43/126 (34%), Positives = 63/126 (50%)

Query:   548 SELLAGSMDKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGD 607
             S + A   D++  G+  + N  Y++    G   +VT M +L  M        G  I    
Sbjct:   700 STISADKRDEN--GAVMEPNSVYMMAHS-GARGSVTQMKQLGGMRGLMAKPNGDIIE--- 753

Query:   608 VTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV-Q 666
              TP    + ++F  GLT  E+F  T G R+GL DTA+KTA +GY+ RRLV   +D  V +
Sbjct:   754 -TP----IISNFKEGLTVLEYFNSTHGARKGLSDTALKTANSGYLTRRLVDVAQDCIVRE 808

Query:   667 YDMSFD 672
             +D   D
Sbjct:   809 HDCGTD 814

 Score = 112 (44.5 bits), Expect = 3.9e-27, Sum P(5) = 3.9e-27
 Identities = 25/55 (45%), Positives = 32/55 (58%)

Query:  1098 PSACKAE--ACREKYVR-----AQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             P  C++E   C   Y R       +    AVG +AAQSIGEPGTQ+T++TFH  G
Sbjct:   882 PLTCESEEGVCAMCYGRDLARGTMVNQGEAVGIIAAQSIGEPGTQLTMRTFHIGG 936

 Score = 89 (36.4 bits), Expect = 3.9e-27, Sum P(5) = 3.9e-27
 Identities = 32/132 (24%), Positives = 64/132 (48%)

Query:  1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENH--GMSIDFRHPML 1320
             +++V   Y ++GVK +  +   + + + ++    +   +  L+   H      D  +   
Sbjct:  1229 VKEVQEVYRLQGVKINDKHIEVIVRQM-LQKWEISDSGDTTLLKGEHVDKQEFDAANEKT 1287

Query:  1321 VA-DLMTSKGE--VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSEC 1377
             +A     + GE  +LGIT+  L     S ++ ASF+ T+  L +A+  G+ D + G+ E 
Sbjct:  1288 IARGGRPASGEPILLGITKASL--QTRSFISAASFQETTRVLTEASVQGKKDKLVGLKEN 1345

Query:  1378 IIMGLPMNVGTG 1389
             +I+G  +  GTG
Sbjct:  1346 VIVGRLIPAGTG 1357

 Score = 74 (31.1 bits), Expect = 2.1e-18, Sum P(5) = 2.1e-18
 Identities = 24/107 (22%), Positives = 49/107 (45%)

Query:   947 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVELK- 1005
             +++   LG+EA  + ++ E++ V    G+ I+ +H  ++   M  K E+  +G    LK 
Sbjct:  1213 HDILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEISDSGDTTLLKG 1272

Query:  1006 -----RLLDDIIAKNSSRSDPSLSAQEIL-ALSNETLDSKEFLQDTS 1046
                  +  D    K  +R     S + IL  ++  +L ++ F+   S
Sbjct:  1273 EHVDKQEFDAANEKTIARGGRPASGEPILLGITKASLQTRSFISAAS 1319

 Score = 74 (31.1 bits), Expect = 3.8e-16, Sum P(4) = 3.8e-16
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             +VLM + +N+++P NG  +I  +QD I G Y LT
Sbjct:   484 RVLMMSTNNVLSPANGAPIIVPSQDMILGLYYLT 517

 Score = 60 (26.2 bits), Expect = 3.3e-24, Sum P(5) = 3.3e-24
 Identities = 12/49 (24%), Positives = 27/49 (55%)

Query:  1283 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 1331
             +++   LG+EA  + ++ E++ V    G+ I+ +H  ++   M  K E+
Sbjct:  1213 HDILSILGVEALANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEI 1261

 Score = 48 (22.0 bits), Expect = 2.9e-16, Sum P(4) = 2.9e-16
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +A+  G+ D + G+ E +I+G  +  GTG
Sbjct:  1329 EASVQGKKDKLVGLKENVIVGRLIPAGTG 1357

 Score = 41 (19.5 bits), Expect = 3.9e-27, Sum P(5) = 3.9e-27
 Identities = 11/34 (32%), Positives = 17/34 (50%)

Query:   134 CTTCGQNLS-DCVGH--FGYIDLPLPVFHIGYFR 164
             C  CG  ++   V     G+I+L  PV HI + +
Sbjct:    87 CEKCGVEVTLQKVRRERMGHIELAAPVAHIWFLK 120

 Score = 40 (19.1 bits), Expect = 6.8e-20, Sum P(5) = 6.8e-20
 Identities = 20/68 (29%), Positives = 29/68 (42%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDL--DYARIVKGRLERTTLGEVCEYIEEVFVP 821
             G+PR+ E+  A R     II A +D       DY    K R+      E  E +E + VP
Sbjct:  1131 GLPRVAELFEARRPKDHAII-AEIDGYVRFGRDYKN--KRRISIEPSNEAMEPVEYM-VP 1186

Query:   822 DDSFILIK 829
                 I ++
Sbjct:  1187 KGKHIPVQ 1194

 Score = 39 (18.8 bits), Expect = 2.6e-12, Sum P(5) = 2.6e-12
 Identities = 17/52 (32%), Positives = 28/52 (53%)

Query:   313 SKPSDLILTRL-LVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKL 356
             ++P  ++LT + ++PP  +RP V  D      SD ND+   + NR   L +L
Sbjct:   235 NRPEWMVLTVIPVIPPE-LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL 285

 Score = 37 (18.1 bits), Expect = 1.4e-19, Sum P(5) = 1.4e-19
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query:  1121 VGALAAQSIGEPGTQMTL 1138
             +G +AA  I  PGT+  L
Sbjct:   837 LGRVAADDILRPGTEEVL 854

 Score = 37 (18.1 bits), Expect = 1.4e-19, Sum P(5) = 1.4e-19
 Identities = 23/98 (23%), Positives = 37/98 (37%)

Query:   665 VQYDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVPRTLLFDNPE 724
             V Y MS DA    +   +    + +I  +P   G     +   +PR   V        P+
Sbjct:  1091 VHYPMSVDAILSIEDGQVIEAGD-VIARIPRE-GAKTKDITGGLPR---VAELFEARRPK 1145

Query:   725 FH--FPQV--YYERRRDYSVKVTASVKVTLELWNPGDY 758
              H    ++  Y    RDY  K   S++ + E   P +Y
Sbjct:  1146 DHAIIAEIDGYVRFGRDYKNKRRISIEPSNEAMEPVEY 1183


>UNIPROTKB|E1C4T2 [details] [associations]
            symbol:POLR1A "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            InterPro:IPR007081 InterPro:IPR015699 Pfam:PF04998 GO:GO:0005634
            GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
            PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            EMBL:AADN02014782 EMBL:AADN02014783 IPI:IPI00576593
            Ensembl:ENSGALT00000025424 ArrayExpress:E1C4T2 Uniprot:E1C4T2
        Length = 745

 Score = 190 (71.9 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
 Identities = 55/172 (31%), Positives = 87/172 (50%)

Query:  1226 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 1283
             L  + VI  V+GI R +++E   E   K  +L  EG NL ++     +  + +  SN+ +
Sbjct:   572 LTRNTVIHEVKGITRCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIH 631

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
              + K  GIE+A   ++ EIK V   +G+ +D RH  LVAD M  +G    + R G+ +  
Sbjct:   632 AMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEGVYKPMNRFGI-QSS 690

Query:  1344 ESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 1395
              S L   +FE +   L +A   G  D +   S C+++G  +  GTGL  L Q
Sbjct:   691 SSPLQQMTFETSYKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQ 742

 Score = 131 (51.2 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
 Identities = 26/37 (70%), Positives = 29/37 (78%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             K+ R+  +P  AVG LAAQSIGEP TQMTL TFHFAG
Sbjct:   233 KWQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAG 269

 Score = 125 (49.1 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
 Identities = 25/40 (62%), Positives = 32/40 (80%)

Query:   633 MGGREGLVDTAVKTAETGYMQRR--LVKSLEDLCVQYDMS 670
             M GREGLVDTAVKT+ +GY+QR   ++K LE L VQYD++
Sbjct:     1 MAGREGLVDTAVKTSRSGYLQRNRCIIKHLEGLVVQYDLT 40

 Score = 125 (49.1 bits), Expect = 1.2e-13, Sum P(3) = 1.2e-13
 Identities = 36/106 (33%), Positives = 57/106 (53%)

Query:   890 LLPSVVIKGVQGINRAVIHEEDVEGVTKYKLL-VEGDNLRDVMATYGVKGV-KCSSNNTY 947
             L  + VI  V+GI R +++E   E   K  +L  EG NL ++     +  + +  SN+ +
Sbjct:   572 LTRNTVIHEVKGITRCLLNESTNEKGEKELILHTEGINLAELFRYSDILDLNRLYSNDIH 631

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKG 993
              + K  GIE+A   ++ EIK V   +G+ +D RH  LVAD M  +G
Sbjct:   632 AMAKNYGIESALRVVIKEIKDVFAVYGIVVDPRHLSLVADYMCFEG 677

 Score = 70 (29.7 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query:   764 GVPRIKEIIN-ASRNISTPIITAYLDKDTDLDYARI--VKGRLERTTLGEVCEYIE 816
             G+PR++EI+  AS NI TP+++  +   T   + ++  +K +L R  L EV + +E
Sbjct:   278 GIPRLREILMVASANIKTPMMSVPV-LGTKKAHKKVKQLKKQLTRVCLAEVLQKVE 332

 Score = 56 (24.8 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query:   667 YDMSFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
             Y    +A   G  D +   S C+++G  +  GTGL  L Q
Sbjct:   703 YKFLKEATMMGAHDELRSPSACLVLGKVVKGGTGLFDLKQ 742

 Score = 44 (20.5 bits), Expect = 9.6e-27, Sum P(4) = 9.6e-27
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query:   733 ERRRDYSVKVTASVKVTLELWNPGDY--KLSQDGVPRIKEIIN 773
             ++RR Y  K       +L +W P  Y   +S+     +++ IN
Sbjct:   164 KKRRKYLKKANKCPDPSLAVWRPDSYFASVSETFESGVEDYIN 206

 Score = 37 (18.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query:   386 DGDEMNVHLPQTEEARAE 403
             +G+E     P+ EEA +E
Sbjct:   466 NGEENTAENPEDEEAESE 483


>TIGR_CMR|APH_1023 [details] [associations]
            symbol:APH_1023 "DNA-directed RNA polymerase, beta'
            subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
            "cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
            HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
            STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
            PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
            ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
            TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
        Length = 1409

 Score = 182 (69.1 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             +L NR P+LH+L + A    ++  +  + +  VC+ +NADFDGD+M VH+P ++EA+ EA
Sbjct:   422 ILLNRAPTLHRLGLQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSQEAQLEA 481

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
                           +VLM + +N+++P NG  +I  ++D + G Y LT
Sbjct:   482 --------------RVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515

 Score = 126 (49.4 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 42/124 (33%), Positives = 63/124 (50%)

Query:   548 SELLAGSMDK--STLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGI 605
             ++L+A  M K  S     GK N  Y++    G   + + M +L+ M        G  I  
Sbjct:   690 TDLIARDMMKAISLCDEKGKYNSIYMMANS-GARGSASQMKQLAGMRGLMAKPSGEIIE- 747

Query:   606 GDVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
                TP    + ++F  GL+  E+F  T G R+GL DTA+KTA +GY+ RRLV   +D  V
Sbjct:   748 ---TP----IISNFREGLSVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCTV 800

Query:   666 -QYD 668
              ++D
Sbjct:   801 VEHD 804

 Score = 108 (43.1 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query:  1120 AVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIE 1152
             AVG +AAQS+GEPGTQ+T++TFH  G     +E
Sbjct:   905 AVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVE 937

 Score = 91 (37.1 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 23/59 (38%), Positives = 35/59 (59%)

Query:  1333 GITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLI 1391
             GIT+  L     S ++ ASF+ T+  L +AAF G+ D + G+ E +I+G  +  GTG I
Sbjct:  1299 GITKASLDT--NSFISAASFQETTKVLTEAAFAGKEDPLYGLKENVIVGRLIPAGTGFI 1355

 Score = 71 (30.1 bits), Expect = 1.5e-15, Sum P(4) = 1.5e-15
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             +VLM + +N+++P NG  +I  ++D + G Y LT
Sbjct:   482 RVLMMSTNNILSPSNGRPIIVPSKDIVLGIYYLT 515

 Score = 61 (26.5 bits), Expect = 5.3e-17, Sum P(5) = 5.3e-17
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLI 702
             +AAF G+ D + G+ E +I+G  +  GTG I
Sbjct:  1325 EAAFAGKEDPLYGLKENVIVGRLIPAGTGFI 1355

 Score = 43 (20.2 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFRCVINILQSICKNP 177
             C  CG  ++         G+I+L  PV HI + + + + + ++   P
Sbjct:    84 CEKCGVEVTSSKVRRERMGHIELVSPVAHIWFLKSLPSRIGALLDMP 130

 Score = 41 (19.5 bits), Expect = 1.9e-26, Sum P(6) = 1.9e-26
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query:   313 SKPSDLILTRLLVPPNCIRPSV--------ISDLKSDNDVVLFNRQPSLHKL 356
             ++P  +ILT + V P  +RP V        +SDL      ++ NR   L KL
Sbjct:   232 NRPEWMILTVIPVLPPDLRPLVSLENGRPAVSDLNHHYRTII-NRNNRLEKL 282


>UNIPROTKB|P37871 [details] [associations]
            symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
            species:224308 "Bacillus subtilis subsp. subtilis str. 168"
            [GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
            GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
            RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
            DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
            EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
            PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
            Uniprot:P37871
        Length = 1199

 Score = 213 (80.0 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
 Identities = 96/394 (24%), Positives = 170/394 (43%)

Query:   330 IRPSVISDLKS--DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDG 387
             ++P V   L+S      VL NR P+LH+L I A    ++  R  R +  VCT YNADFDG
Sbjct:   393 VQPEVWDVLESVIKEHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADFDG 452

Query:   388 DEMNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITG 447
             D+M VH+P + EA+AEA              ++LM    N++ P++G+ ++  +QD + G
Sbjct:   453 DQMAVHVPLSAEAQAEA--------------RILMLAAQNILNPKDGKPVVTPSQDMVLG 498

Query:   448 GYLLTQKNA-FFNRAQTMRIAS-TLIADTSDICGIIKRFSW--RSWNPVVFV---RTAVI 500
              Y LT + A         +     L+A  +    +  R +    S   V F    R+ ++
Sbjct:   499 NYYLTLERAGAVGEGMVFKNTDEALLAYQNGYVHLHTRVAVAANSLKNVTFTEEQRSKLL 558

Query:   501 WT--GKQIFSLILK---PNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSM 555
              T  GK +F+ IL    P  + P  +N++ K    T +  F  + + V      ++A   
Sbjct:   559 ITTVGKLVFNEILPESFPYMNEPTKSNIEEK----TPDRFFLEKGADV----KAVIAQQP 610

Query:   556 DKSTLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVT---PGQ 612
               +    G    +   + + F        + R+  +   Y    G ++G+ D+      Q
Sbjct:   611 INAPFKKGILGKIIAEIFKRFHITETSKMLDRMKNLGFKYSTKAGITVGVSDIVVLDDKQ 670

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVK--TAETGYMQRRLVKSLEDLCVQYDMS 670
               ++ +        + F   +   E   +  +   +A    +Q +L+KSL++L   Y MS
Sbjct:   671 EILEEAQSKVDNVMKQFRRGLITEEERYERVISIWSAAKDVIQGKLMKSLDELNPIYMMS 730

Query:   671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 704
              D+   G     + ++   + GL  N    +I+L
Sbjct:   731 -DSGARGNASNFTQLAG--MRGLMANPAGRIIEL 761

 Score = 188 (71.2 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
 Identities = 80/311 (25%), Positives = 139/311 (44%)

Query:  1101 CKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDS 1160
             CK    R     + +E   AVG +AAQSIGEPGTQ+T++TFH  G   + I +       
Sbjct:   899 CKRCYGRNLATGSDVEVGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQE 958

Query:  1161 FILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSKM 1220
                 +    +  +     +ID     I   R     + V G     ++ +  +  +NS++
Sbjct:   959 LFEARNPKGQATI----TEIDGTVVEINEVRDKQQEIVVQG----AVETRSYTAPYNSRL 1010

Query:  1221 YQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSN 1280
                K      + +G Q +    I  +++  VT    + E   L +V   Y ++GV+    
Sbjct:  1011 ---KVAEGDKITRG-QVLTEGSIDPKELLKVTDLTTVQEY-LLHEVQKVYRMQGVEIGDK 1065

Query:  1281 NTYEVY------KTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADL-MTSKGEVLG 1333
             +  EV       K   I+A  + ++     +++ H  +   +  +L  +   T +  +LG
Sbjct:  1066 HV-EVMVRQMLRKVRVIDAGDTDVLPGT--LLDIHQFTEANKKVLLEGNRPATGRPVLLG 1122

Query:  1334 ITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 1393
             IT+  L    +S L+ ASF+ T+  L DAA  G+ D + G+ E +I+G  +  GTG++K 
Sbjct:  1123 ITKASLET--DSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMMKY 1180

Query:  1394 LQAVPRSEPVP 1404
              +  P S   P
Sbjct:  1181 RKVKPVSNVQP 1191

 Score = 139 (54.0 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
 Identities = 35/92 (38%), Positives = 53/92 (57%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFDAA 674
             +++SF  GLT  E+F  T G R+GL DTA+KTA++GY+ RRLV   +D+ ++        
Sbjct:   763 IKSSFREGLTVLEYFISTHGARKGLADTALKTADSGYLTRRLVDVAQDVIIR-------- 814

Query:   675 FYGQTDCISGVSECIIMGLPMNVGTGLIKLLQ 706
                +TDC  G    I+   P+  GT  I+ L+
Sbjct:   815 ---ETDC--GTDRGIL-AKPLKEGTETIERLE 840

 Score = 73 (30.8 bits), Expect = 2.7e-21, Sum P(3) = 2.7e-21
 Identities = 12/38 (31%), Positives = 24/38 (63%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNA 57
             ++LM    N++ P++G+ ++  +QD + G Y LT + A
Sbjct:   470 RILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLERA 507

 Score = 69 (29.3 bits), Expect = 1.7e-14, Sum P(4) = 1.7e-14
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSEPVP 715
             DAA  G+ D + G+ E +I+G  +  GTG++K  +  P S   P
Sbjct:  1148 DAAIKGKRDELLGLKENVIIGKLVPAGTGMMKYRKVKPVSNVQP 1191

 Score = 53 (23.7 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFR 164
             C  CG  ++         G+I+L  PV HI YF+
Sbjct:    75 CDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFK 108

 Score = 44 (20.5 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
 Identities = 20/52 (38%), Positives = 28/52 (53%)

Query:   313 SKPSDLILTRL-LVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSLHKL 356
             +KPS +IL  L ++PP  +RP V  D      SD ND+   + NR   L +L
Sbjct:   221 NKPSWMILDVLPVIPPE-LRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRL 271

 Score = 42 (19.8 bits), Expect = 2.7e-26, Sum P(5) = 2.7e-26
 Identities = 16/72 (22%), Positives = 33/72 (45%)

Query:   977 IDFRHPMLV--ADLMTSKG---EVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILAL 1031
             +D    +++   D  T +G   + L  GT   ++RL + +I + + +        E+L  
Sbjct:   805 VDVAQDVIIRETDCGTDRGILAKPLKEGTET-IERLEERLIGRFARKQVKHPETGEVLVN 863

Query:  1032 SNETLDSKEFLQ 1043
              NE +D  + L+
Sbjct:   864 ENELIDEDKALE 875

 Score = 38 (18.4 bits), Expect = 2.0e-11, Sum P(4) = 2.0e-11
 Identities = 11/22 (50%), Positives = 16/22 (72%)

Query:   756 GDYKLSQDGVPRIKEIINASRN 777
             GD  ++Q G+PRI+E+  A RN
Sbjct:   946 GD-DITQ-GLPRIQELFEA-RN 964


>TIGR_CMR|ECH_0951 [details] [associations]
            symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
            subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
            KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
            TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
            STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
            PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
        Length = 1410

 Score = 180 (68.4 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 38/108 (35%), Positives = 64/108 (59%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             +L NR P+LH+L I A    ++  +  + +  VC+ +NADFDGD+M VH+P + EA+ EA
Sbjct:   422 ILLNRAPTLHRLGIQAFDPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHIPLSLEAQLEA 481

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
                           ++LM + +N+++P NG+ +I  ++D + G Y LT
Sbjct:   482 --------------RILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLT 515

 Score = 127 (49.8 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 42/124 (33%), Positives = 62/124 (50%)

Query:   548 SELLAGSMDK--STLGSGGKANVFYILLRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGI 605
             ++L+A  M K  S      K N  Y++    G   + + M +L+ M        G  I  
Sbjct:   695 TDLIAKDMMKAISVYDVESKLNSIYMMAHS-GARGSASQMKQLAGMRGLMAKPSGEIIE- 752

Query:   606 GDVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLED-LC 664
                TP    + ++F  GL   E+F  T G R+GL DTA+KTA +GY+ RRLV   +D + 
Sbjct:   753 ---TP----IISNFREGLNVFEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDCIV 805

Query:   665 VQYD 668
             V+YD
Sbjct:   806 VEYD 809

 Score = 108 (43.1 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 19/33 (57%), Positives = 25/33 (75%)

Query:  1120 AVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIE 1152
             AVG +AAQS+GEPGTQ+T++TFH  G     +E
Sbjct:   910 AVGVIAAQSVGEPGTQLTMRTFHVGGTAMRGVE 942

 Score = 94 (38.1 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 30/90 (33%), Positives = 46/90 (51%)

Query:  1310 GMSIDFRHPMLVADLMTSKGE-------VL-GITRHGLAKMKESVLNLASFENTSDHLFD 1361
             G +ID    +   D M   G+       +L GITR  L     S ++ ASF+ T+  L +
Sbjct:  1273 GENIDMEEVIKTNDNMVKMGKSPAKYAPILQGITRASLDT--NSFVSAASFQETTKVLTE 1330

Query:  1362 AAFYGQTDCISGVSECIIMGLPMNVGTGLI 1391
             AAF G+ D + G+ E +I+G  +  GTG +
Sbjct:  1331 AAFSGKEDSLYGLKENVIVGRLIPAGTGFL 1360

 Score = 85 (35.0 bits), Expect = 8.4e-19, Sum P(6) = 8.4e-19
 Identities = 24/107 (22%), Positives = 54/107 (50%)

Query:   947 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGTPVEL-- 1004
             +++ + LG+EA  + +++EI+ V    G+ ID +H  ++   M  K E+   G  + L  
Sbjct:  1214 HDILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPGDTMYLVG 1273

Query:  1005 KRL-LDDIIAKNSSR----SDPSLSAQEILALSNETLDSKEFLQDTS 1046
             + + ++++I  N +       P+  A  +  ++  +LD+  F+   S
Sbjct:  1274 ENIDMEEVIKTNDNMVKMGKSPAKYAPILQGITRASLDTNSFVSAAS 1320

 Score = 71 (30.1 bits), Expect = 2.9e-15, Sum P(5) = 2.9e-15
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             ++LM + +N+++P NG+ +I  ++D + G Y LT
Sbjct:   482 RILMMSTNNILSPSNGKPIIVPSKDIVLGIYYLT 515

 Score = 70 (29.7 bits), Expect = 6.8e-24, Sum P(7) = 6.8e-24
 Identities = 14/49 (28%), Positives = 29/49 (59%)

Query:  1283 YEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEV 1331
             +++ + LG+EA  + +++EI+ V    G+ ID +H  ++   M  K E+
Sbjct:  1214 HDILRVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEI 1262

 Score = 61 (26.5 bits), Expect = 6.9e-17, Sum P(5) = 6.9e-17
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGLI 702
             +AAF G+ D + G+ E +I+G  +  GTG +
Sbjct:  1330 EAAFSGKEDSLYGLKENVIVGRLIPAGTGFL 1360

 Score = 50 (22.7 bits), Expect = 7.2e-21, Sum P(6) = 7.2e-21
 Identities = 32/156 (20%), Positives = 63/156 (40%)

Query:   700 GLIKLLQAVPRSEPVPRTLLFDNPEF-HFPQVYYERRRDYSVKVTASVKVTLE------- 751
             GL ++++      P    ++ D   +  F + YY  +R   +K  +     +E       
Sbjct:  1131 GLPRVIELFEARRPKEHAIVSDIDGYVEFGKDYYRSKRRIFIKPVSDTLSPVEYLVPKGK 1190

Query:   752 --LWNPGDY----KLSQDGVPRIKEIINASRNISTPIITAYLDKDTDLDY----ARIVKG 801
               + N GD+     L  DG P   +I+   R +    +  Y+  +    Y     RI   
Sbjct:  1191 HTIVNEGDFVHKGDLLMDGDPDPHDIL---RVLGVEALANYMISEIQQVYRLQGVRIDNK 1247

Query:   802 RLERTTLGEVCEYIEEVFVPDDSFILI--KLDMDRI 835
              +E   L ++ + +E +F P D+  L+   +DM+ +
Sbjct:  1248 HIE-IILRQMLQKVE-IFEPGDTMYLVGENIDMEEV 1281

 Score = 42 (19.8 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query:   134 CTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFRCVINILQSICKNP 177
             C  CG  ++         G+I+L  PV H+ + + + + + ++   P
Sbjct:    84 CEKCGVEVTSSKVRRERMGHIELVSPVAHVWFLKSLPSRIGALLDMP 130

 Score = 42 (19.8 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 18/53 (33%), Positives = 28/53 (52%)

Query:   313 SKPSDLILTRL-LVPPNCIRPSV--------ISDLKSDNDVVLFNRQPSLHKL 356
             +KP  +ILT + ++PP+ +RP V        +SDL      ++ NR   L KL
Sbjct:   232 NKPEWMILTVIPILPPD-LRPLVSLENGRPAVSDLNHHYRTII-NRNNRLGKL 282

 Score = 40 (19.1 bits), Expect = 9.5e-18, Sum P(7) = 9.5e-18
 Identities = 7/20 (35%), Positives = 12/20 (60%)

Query:  1067 TSHQDKVSQPLREQILSHQD 1086
             T H D  S+ ++E  + +QD
Sbjct:   656 TMHVDNASEKIKEFAVQYQD 675

 Score = 38 (18.4 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query:  1250 GVTKYKLLVEGDNLRDVM 1267
             G+ KY  L++G ++ +V+
Sbjct:  1029 GIIKYMDLIDGVSINEVL 1046

 Score = 38 (18.4 bits), Expect = 3.0e-26, Sum P(7) = 3.0e-26
 Identities = 7/21 (33%), Positives = 13/21 (61%)

Query:  1153 EVFVPDDSFILI--KLDMDRI 1171
             E+F P D+  L+   +DM+ +
Sbjct:  1261 EIFEPGDTMYLVGENIDMEEV 1281

 Score = 38 (18.4 bits), Expect = 2.1e-19, Sum P(7) = 2.1e-19
 Identities = 6/18 (33%), Positives = 13/18 (72%)

Query:   914 GVTKYKLLVEGDNLRDVM 931
             G+ KY  L++G ++ +V+
Sbjct:  1029 GIIKYMDLIDGVSINEVL 1046


>UNIPROTKB|H9L2Z2 [details] [associations]
            symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
            "Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
            [GO:0008811 "chloramphenicol O-acetyltransferase activity"
            evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
            Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
            GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
            GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
            GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
            Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
        Length = 527

 Score = 203 (76.5 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
 Identities = 38/65 (58%), Positives = 49/65 (75%)

Query:   607 DVTPGQG-FVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCV 665
             D +P  G FV   F +G+ P+EFFFH M GREGLVDTAVKT+ +GY+QR ++K LE L V
Sbjct:   333 DFSPSSGGFVTGRFLTGIKPSEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVV 392

Query:   666 QYDMS 670
             QYD++
Sbjct:   393 QYDLT 397

 Score = 155 (59.6 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
 Identities = 62/211 (29%), Positives = 93/211 (44%)

Query:   390 MNVHLPQTEEARAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGY 449
             MN H PQ E  RAEA    + L+           ++  LV P++G+ L    QD +  G 
Sbjct:     1 MNAHFPQNELGRAEA----YTLAF---------TDEQYLV-PKDGKPLPGLIQDHMISGV 46

Query:   450 LLTQKNAFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSL 509
              +T +  FF R Q M +    + D     G IK F      P   ++   +WTGKQ+ S 
Sbjct:    47 SMTIRGCFFTREQYMELVYRGLTDKK---GRIKTF------PPAIMKPQRLWTGKQVVST 97

Query:   510 ILK---PNRDCPVNANLKTK-GRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGK 565
             +L    P    P+N   K K    +  N  F  +   VI+R+ ELL G +DK+  GS   
Sbjct:    98 LLINIIPENHVPLNLTGKAKLVVVFFLNSCFLFQ---VIIRSGELLCGVLDKAHFGSSAY 154

Query:   566 ANVFYILLRDFGEDVAVTAMWRLSRMTSFYL 596
               V +     +G + +   +  L R+ + YL
Sbjct:   155 GLV-HCCYEIYGGETSGKVLPCLGRLFTAYL 184

 Score = 72 (30.4 bits), Expect = 4.4e-26, Sum P(3) = 4.4e-26
 Identities = 15/24 (62%), Positives = 18/24 (75%)

Query:  1109 KYVRAQIEPATAVGALAAQSIGEP 1132
             K+ R+  +P  AVG LAAQSIGEP
Sbjct:   503 KWQRSLCDPGEAVGLLAAQSIGEP 526

 Score = 60 (26.2 bits), Expect = 2.6e-16, Sum P(3) = 2.6e-16
 Identities = 13/47 (27%), Positives = 23/47 (48%)

Query:    30 VTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRK 76
             + P++G+ L    QD +  G  +T +  FF R Q M +    +  +K
Sbjct:    26 LVPKDGKPLPGLIQDHMISGVSMTIRGCFFTREQYMELVYRGLTDKK 72

 Score = 49 (22.3 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
 Identities = 34/168 (20%), Positives = 64/168 (38%)

Query:   863 VSGHSFLILKPKDSSKSFNSKMYQMKQLLPSVVIKGVQG-INRAVIHEEDVEG-VTKYKL 920
             V+G     +KP   S+ F   M   + L+ + V     G + R +I  + +EG V +Y L
Sbjct:   342 VTGRFLTGIKP---SEFFFHCMAGREGLVDTAVKTSRSGYLQRCII--KHLEGLVVQYDL 396

Query:   921 LVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFR 980
              V   +   V   YG  G+        ++ K+ G        +    + +  +       
Sbjct:   397 TVRDSDGSVVQFLYGEDGL--------DIPKSSGTSVCHCYTVLYFNVTLLKYRKKAPLL 448

Query:   981 HPMLVADLMTSKGEVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEI 1028
               +   +  +SKG     G   +LK  L+++  K+       +S  E+
Sbjct:   449 CQLWTGESASSKGLSTSRGFTSKLKAFLNNLFQKHLKVESKIISTNEL 496


>TIGR_CMR|NSE_0677 [details] [associations]
            symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
            subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
            [GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
            evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
            InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
            GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
            RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
            STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
            PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
        Length = 1375

 Score = 171 (65.3 bits), Expect = 5.1e-26, Sum P(5) = 5.1e-26
 Identities = 36/108 (33%), Positives = 62/108 (57%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             V  NR P+LH+LS+ A    ++  +  + +  VCT +NADFDGD+M+VH+P + EA+ EA
Sbjct:   422 VFLNRAPTLHRLSVQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMSVHVPLSIEAQVEA 481

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 452
                           ++L+ + +N++ P N   +I  ++D + G Y L+
Sbjct:   482 --------------RLLVMSTNNVLNPANSRPIIVPSKDIVLGVYYLS 515

 Score = 112 (44.5 bits), Expect = 5.1e-26, Sum P(5) = 5.1e-26
 Identities = 25/59 (42%), Positives = 35/59 (59%)

Query:  1101 CKAE--ACREKYV-----RAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIE 1152
             CK++   CR+ Y      R  +    AVG +AAQS+GEPGTQ+T++TFH  G     +E
Sbjct:   871 CKSKHGICRKCYGADLSNRKLVALGEAVGVIAAQSVGEPGTQLTMRTFHVGGAATRRVE 929

 Score = 107 (42.7 bits), Expect = 5.1e-26, Sum P(5) = 5.1e-26
 Identities = 25/64 (39%), Positives = 38/64 (59%)

Query:   606 GDVTPGQGFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLED-LC 664
             G++ P    + ++   G    E+F  T G R+GL DTA+KTA +GY+ RRLV   +D + 
Sbjct:   735 GEIIPNP--IISNLREGQGVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVAQDSII 792

Query:   665 VQYD 668
             V+ D
Sbjct:   793 VEED 796

 Score = 104 (41.7 bits), Expect = 5.1e-26, Sum P(5) = 5.1e-26
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query:  1263 LRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVA 1322
             + ++   Y ++GVK ++ +   + + + ++    T   +   ++   G  ID      + 
Sbjct:  1217 ISEIQRVYRLQGVKINNKHIEVIIRKM-LQKVEITDAGDTTFLI---GEQIDKSRVERIN 1272

Query:  1323 DLMTSKG--------EVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGV 1374
             ++M S+G         +LGITR  L    ES ++ ASF+ T+  L +AA  G+ D + G+
Sbjct:  1273 EVMASQGLRCCSYVPVLLGITRASL--QTESFISAASFQETTKVLTEAAVAGKVDRLRGL 1330

Query:  1375 SECIIMGLPMNVGTG 1389
              E II G  + VG G
Sbjct:  1331 KENIIAGRLLPVGAG 1345

 Score = 71 (30.1 bits), Expect = 5.9e-16, Sum P(4) = 5.9e-16
 Identities = 31/148 (20%), Positives = 70/148 (47%)

Query:   910 EDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNT--YEVYKTLGIEAARSTIMTEIK 967
             ED E + +Y L+ +G +L      +  +G      +   +E+ + LG+EA    +++EI+
Sbjct:  1163 EDKERIYEY-LVPKGRHLIVSEGDFIRRGEPLMDGDPDLHEILRVLGLEALAEYMISEIQ 1221

Query:   968 LVMENHGMSIDFRHPMLVADLMTSKGEVL--GN-----GTPVELKRL--LDDIIAKNSSR 1018
              V    G+ I+ +H  ++   M  K E+   G+     G  ++  R+  +++++A    R
Sbjct:  1222 RVYRLQGVKINNKHIEVIIRKMLQKVEITDAGDTTFLIGEQIDKSRVERINEVMASQGLR 1281

Query:  1019 SDPSLSAQEILALSNETLDSKEFLQDTS 1046
                 +    +L ++  +L ++ F+   S
Sbjct:  1282 CCSYVPV--LLGITRASLQTESFISAAS 1307

 Score = 68 (29.0 bits), Expect = 2.1e-22, Sum P(5) = 2.1e-22
 Identities = 22/88 (25%), Positives = 44/88 (50%)

Query:  1246 EDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSSNNT--YEVYKTLGIEAARSTIMTEIK 1303
             ED E + +Y L+ +G +L      +  +G      +   +E+ + LG+EA    +++EI+
Sbjct:  1163 EDKERIYEY-LVPKGRHLIVSEGDFIRRGEPLMDGDPDLHEILRVLGLEALAEYMISEIQ 1221

Query:  1304 LVMENHGMSIDFRHPMLVADLMTSKGEV 1331
              V    G+ I+ +H  ++   M  K E+
Sbjct:  1222 RVYRLQGVKINNKHIEVIIRKMLQKVEI 1249

 Score = 53 (23.7 bits), Expect = 1.7e-13, Sum P(5) = 1.7e-13
 Identities = 9/34 (26%), Positives = 21/34 (61%)

Query:    20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLT 53
             ++L+ + +N++ P N   +I  ++D + G Y L+
Sbjct:   482 RLLVMSTNNVLNPANSRPIIVPSKDIVLGVYYLS 515

 Score = 51 (23.0 bits), Expect = 6.0e-14, Sum P(4) = 6.0e-14
 Identities = 12/29 (41%), Positives = 17/29 (58%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTG 700
             +AA  G+ D + G+ E II G  + VG G
Sbjct:  1317 EAAVAGKVDRLRGLKENIIAGRLLPVGAG 1345

 Score = 49 (22.3 bits), Expect = 5.1e-26, Sum P(5) = 5.1e-26
 Identities = 65/312 (20%), Positives = 121/312 (38%)

Query:    67 IASTLIAGRKVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDP-QRTPIPHGLLDRRM 125
             I  +L +  K+  R L  G VTK + +  ++  +     L+C      T     L  +  
Sbjct:    20 IKISLASADKI--RSLSYGEVTKPETINYRT-FKPEKNGLFCAKIFGPTKSYECLCGKYK 76

Query:   126 GTNQKEANCTTCGQNL-SDCVGH--FGYIDLPLPVFHIGYFRCVINILQSICKNPTCARV 182
                     C  CG  + S  V     G+I+L  PV HI + +   ++   IC        
Sbjct:    77 KIKYSGVICERCGVEVTSSRVRRERMGHIELASPVAHIWFLK---SLPSKICI--LLDLT 131

Query:   183 LLGEEKAAGFRAKLR-NPALSYLVRKSL--KKKILETTKKVSVCPHCGEINGVVKKCGLL 239
             L   EK   F   +  +P ++   +  L   +  +   ++         I     +  L 
Sbjct:   132 LKNVEKVLYFELYIVIDPGVTTFTKNELITDEAYMNAVREYGPDSFTAMIGAEAIRHMLA 191

Query:   240 KISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLE-VLQLFEAI 298
              +  EK   + + + A     + +  + +K    +E   +F L     P++ +L +   +
Sbjct:   192 SLDLEKMAVKLRSQAAATNSEVKK-KKIIKTLRLVE---QF-LGSDSRPVDMILDVIPVM 246

Query:   299 PLEDIPLLLMNAELSKPSDL-ILTRLLVPPNCIRPSVISDLKSDNDVVLFNR---QPSLH 354
             P +  PL++++      SDL  L R ++  N    S+I  LK+ N ++   R   Q ++ 
Sbjct:   247 PPDLRPLVMLDGGRFATSDLNALYRSVINRNNRLKSLIY-LKAPNIIINNERRMLQEAVD 305

Query:   355 KLSIMAHRAKVL 366
              L     RAKV+
Sbjct:   306 ALFDNGRRAKVI 317

 Score = 44 (20.5 bits), Expect = 1.7e-13, Sum P(5) = 1.7e-13
 Identities = 10/36 (27%), Positives = 21/36 (58%)

Query:   285 TLNPLEVLQLF-EAIPLEDIPLLLMNAELSKPSDLI 319
             T   L++L++  + +P E I ++L   ++S   DL+
Sbjct:   565 TFGRLQLLKILPKGVPFESINMVLTVRDISNLVDLV 600


>TAIR|locus:2015163 [details] [associations]
            symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
            [GO:0006346 "methylation-dependent chromatin silencing"
            evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
            interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
            evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
            complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
            evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0010495
            "long-distance posttranscriptional gene silencing" evidence=IMP]
            [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
            methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009616 "virus induced gene silencing"
            evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
            interference" evidence=RCA] [GO:0016569 "covalent chromatin
            modification" evidence=RCA] [GO:0031048 "chromatin silencing by
            small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
            in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
            H3-K9 methylation" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
            Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
            SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
            GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
            GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
            Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
            EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
            PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
            UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
            DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
            EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
            KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
            HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
            PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
            GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
            Uniprot:Q9LQ02
        Length = 1453

 Score = 179 (68.1 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
 Identities = 67/237 (28%), Positives = 109/237 (45%)

Query:   234 KKCGLLKISHEKYKNRTKK--KDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEV 291
             K CGL  +       R+    +  +V D   + NE +   PE  A K+  + + LN    
Sbjct:   302 KLCGLRFMKDVLLGKRSDHTFRTVVVGDPSLKLNE-IGI-PESIA-KRLQVSEHLNQCNK 358

Query:   292 LQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVLFNRQP 351
              +L  +     +P LL N E+       L  + V        +   L  D D VL NR P
Sbjct:   359 ERLVTSF----VPTLLDNKEMHVRRGDRLVAIQVNDLQTGDKIFRSLM-DGDTVLMNRPP 413

Query:   352 SLHKLSIMAHRAKVLPHRTF-RFNECVCTPYNADFDGDEMNVHLPQTEEARAEALPSLHK 410
             S+H+ S++A   ++LP  +    N   C P+  DFDGD ++ ++PQ+ +A+ E    L +
Sbjct:   414 SIHQHSLIAMTVRILPTTSVVSLNPICCLPFRGDFDGDCLHGYVPQSIQAKVE----LDE 469

Query:   411 LSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLT-QKNAFFNRAQTMRI 466
             L          +A    L+  +NG  L++  QD +T  YL+  +KN + NRAQ  ++
Sbjct:   470 L----------VALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL 516

 Score = 99 (39.9 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
 Identities = 31/115 (26%), Positives = 50/115 (43%)

Query:  1280 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGL 1339
             +N  +     GI+A RS  +  ++  + + G  I   H +LVAD ++  GE + +   G 
Sbjct:  1145 DNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGEFVALNAKGW 1204

Query:  1340 AKMK--ESV---LNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTG 1389
             +K +  ES       A F + S     AA  G  D + G  + +  G     GTG
Sbjct:  1205 SKQRQVESTPAPFTQACFSSPSQCFLKAAKEGVRDDLQGSIDALAWGKVPGFGTG 1259

 Score = 95 (38.5 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
 Identities = 39/134 (29%), Positives = 60/134 (44%)

Query:   408 LHKLSIMAHRAKV----LMANKSNLVTPRNGELLIAATQDFITGGYLLT-QKNAFFNRAQ 462
             LH     + +AKV    L+A    L+  +NG  L++  QD +T  YL+  +KN + NRAQ
Sbjct:   453 LHGYVPQSIQAKVELDELVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQ 512

Query:   463 TMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDC--PVN 520
               ++             IIK  S  S  P         WTG Q+F ++  P  D   P+N
Sbjct:   513 MQQLQMYCPFQLPPPA-IIKA-SPSSTEPQ--------WTGMQLFGMLFPPGFDYTYPLN 562

Query:   521 ANLKTKGRAYTANE 534
               + + G   + +E
Sbjct:   563 NVVVSNGELLSFSE 576

 Score = 92 (37.4 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
 Identities = 20/64 (31%), Positives = 33/64 (51%)

Query:   117 PHGLLDRRMGTNQKEANCTTCG-QNLSDCVGHFGYIDLPLPVFHIGYFRCVINILQSICK 175
             P+ + D R+G    ++ C TCG ++   C GHFG I+    + +  + + V  +L  IC 
Sbjct:    39 PNQVTDSRLGLPNPDSVCRTCGSKDRKVCEGHFGVINFAYSIINPYFLKEVAALLNKIC- 97

Query:   176 NPTC 179
              P C
Sbjct:    98 -PGC 100

 Score = 83 (34.3 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
 Identities = 20/66 (30%), Positives = 32/66 (48%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFD 672
             G ++NSF +GL P E F H++  R+            G + RRL+  + D+   YD +  
Sbjct:   794 GVIENSFLTGLNPLESFVHSVTSRDSSFSGNADLP--GTLSRRLMFFMRDIYAAYDGTVR 851

Query:   673 AAFYGQ 678
              +F  Q
Sbjct:   852 NSFGNQ 857

 Score = 81 (33.6 bits), Expect = 1.2e-08, Sum P(4) = 1.2e-08
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query:    22 LMANKSNLVTPRNGELLIAATQDFITGGYLLT-QKNAFFNRAQTMRI 67
             L+A    L+  +NG  L++  QD +T  YL+  +KN + NRAQ  ++
Sbjct:   470 LVALDKQLINRQNGRNLLSLGQDSLTAAYLVNVEKNCYLNRAQMQQL 516

 Score = 65 (27.9 bits), Expect = 2.1e-23, Sum P(5) = 2.1e-23
 Identities = 21/96 (21%), Positives = 45/96 (46%)

Query:   513 PNRDCPVNANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYIL 572
             P+   P    ++  G  +    ++ +  + V++ N ELL+ S   + L  G    +  +L
Sbjct:   534 PSSTEPQWTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSFSEGSAWLRDGEGNFIERLL 593

Query:   573 LRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDV 608
               D G+ + +  ++    M S +L+ RG S+ + D+
Sbjct:   594 KHDKGKVLDI--IYSAQEMLSQWLLMRGLSVSLADL 627

 Score = 64 (27.6 bits), Expect = 6.8e-20, Sum P(5) = 6.8e-20
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query:   944 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGE 994
             +N  +     GI+A RS  +  ++  + + G  I   H +LVAD ++  GE
Sbjct:  1145 DNIRQCCSVYGIDAGRSIFVANLESAVSDTGKEILREHLLLVADSLSVTGE 1195

 Score = 37 (18.1 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query:   197 RNPALSYLVRKSLKKKILETTKKVSVCPHC 226
             R P++      ++  +IL TT  VS+ P C
Sbjct:   411 RPPSIHQHSLIAMTVRILPTTSVVSLNPIC 440


>TIGR_CMR|CJE_0529 [details] [associations]
            symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
            subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
            "DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
            EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
            HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
            RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
            STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
            OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
        Length = 1517

 Score = 181 (68.8 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
 Identities = 41/112 (36%), Positives = 63/112 (56%)

Query:   345 VLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEA 404
             V+ NR P+LHKLSI A    ++  +  + +  VC  +NADFDGD+M VH+P ++EA AE 
Sbjct:   443 VMLNRAPTLHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAEC 502

Query:   405 LPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNA 456
                           KVLM +  N++ P +G+ +   +QD + G Y L+ + A
Sbjct:   503 --------------KVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKA 540

 Score = 118 (46.6 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
 Identities = 82/372 (22%), Positives = 153/372 (41%)

Query:   819 FVPDDSF--ILIKLDMDR-IRLLHLEVDIDSIRYCIERTRGIS-GHLTVSGHSFLI---L 871
             FVP++S+  +L K D+   +  ++ +  ++     ++R + +   + T +G S  I   +
Sbjct:   595 FVPENSWNKVLKKKDIAALVDYVYKQGGLEITASFLDRLKNLGFEYATKAGISISIADII 654

Query:   872 KPKDSSKSFNSKMYQMKQLLPSV---VIKGVQGINRAVIHEEDVEGVTKYKL--LVEGD- 925
              P D  K+ +    Q++++  S    +I   +  N+ +   +    V   ++  LVE D 
Sbjct:   655 VPNDKQKAIDEAKKQVREIQNSYNLGLITSGERYNKIIDIWKSTNNVLSKEMMKLVEKDK 714

Query:   926 ---NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHP 982
                N   +MA  G +G   +  +     + L  +   S I T I +     G+++     
Sbjct:   715 EGFNSIYMMADSGARG-SAAQISQLAAMRGLMTKPDGSIIETPI-ISNFREGLNV---LE 769

Query:   983 MLVADLMTSKG---EVLGNGTPVELKRLLDDIIAKNSSRSDPSLSAQEILALSNETLDSK 1039
               ++     KG     L       L R L D+ A+N   +       E + ++  T DS 
Sbjct:   770 YFISTHGARKGLADTALKTANAGYLTRKLIDV-AQNVKITIEDCGTHEGVEINEITADSS 828

Query:  1040 EFLQDTSENFVRDIXXXXXXXXXXXXVTSHQDKVSQPLREQILSHQDKIGHGRESNPFPS 1099
               ++   E  +  +            V   +  +    + +IL      G    +   P 
Sbjct:   829 -IIETLEERILGRVLAEDVIDPITNSVLFAEGTLMDEEKAKILGES---GIKSVNIRTPI 884

Query:  1100 ACKAEA--CREKY-VRAQ----IEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIE 1152
              CKA+   C + Y +       ++P  AVG ++AQSIGEPGTQ+TL+TFH  G     ++
Sbjct:   885 TCKAKKGICAKCYGINLGEGKLVKPGEAVGIISAQSIGEPGTQLTLRTFHSGGTASTDLQ 944

Query:  1153 E--VFVPDDSFI 1162
             +  V    + FI
Sbjct:   945 DRQVSAQKEGFI 956

 Score = 108 (43.1 bits), Expect = 1.3e-20, Sum P(5) = 1.3e-20
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query:   617 NSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLV 657
             ++F  GL   E+F  T G R+GL DTA+KTA  GY+ R+L+
Sbjct:   759 SNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKLI 799

 Score = 98 (39.6 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
 Identities = 22/60 (36%), Positives = 38/60 (63%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             +LG+TR  +    +SV++ ASF+ T+  L +A+  G+ D +  + E +I+G  + VGTGL
Sbjct:  1448 LLGVTRAAIGS--DSVISAASFQETTKVLTEASIAGKFDYLEDLKENVILGRMIPVGTGL 1505

 Score = 64 (27.6 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query:    14 ATRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNA 57
             A   C +VLM +  N++ P +G+ +   +QD + G Y L+ + A
Sbjct:   498 AIAEC-KVLMLSSMNILLPASGKSVTVPSQDMVLGIYYLSLEKA 540

 Score = 59 (25.8 bits), Expect = 1.2e-21, Sum P(4) = 1.2e-21
 Identities = 60/243 (24%), Positives = 101/243 (41%)

Query:   130 KEANCTTCGQNLSDCV---GHFGYIDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGE 186
             K   C  CG  +++        G+I+L  PV HI Y    +N L S  +  T   V + +
Sbjct:    82 KGVKCEKCGVEVANSKVRRSRMGHIELVTPVAHIWY----VNSLPS--RIGTLLGVKMKD 135

Query:   187 -EKAAGFRAKL-RNPALSYLVRKSLKKKILETTKKVSVCPHCGEINGVVKKCGLLKISHE 244
              E+   + A +  NP  ++           E+TKKV    +C  +N    +  + +  + 
Sbjct:   136 LERVLYYEAYIVENPGDAFYDN--------ESTKKVE---YCDVLNEEQYQNLMQRYENS 184

Query:   245 KYKNRTKK---KDAIVE-DLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPL 300
              +K R      +D +   DL+A  N+  +      +  K   I  +  L+V++ F    L
Sbjct:   185 GFKARMGGEVVRDLLANLDLVALLNQLKEEMGATNSEAKKKTI--IKRLKVVENFLNSNL 242

Query:   301 EDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD----LKSD-NDVV--LFNRQPSL 353
              +       A  ++P  +++T L V P  +RP V  D      SD ND+   + NR   L
Sbjct:   243 -NANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNTRL 301

Query:   354 HKL 356
              KL
Sbjct:   302 KKL 304

 Score = 53 (23.7 bits), Expect = 4.2e-16, Sum P(4) = 4.2e-16
 Identities = 11/30 (36%), Positives = 19/30 (63%)

Query:   672 DAAFYGQTDCISGVSECIIMGLPMNVGTGL 701
             +A+  G+ D +  + E +I+G  + VGTGL
Sbjct:  1476 EASIAGKFDYLEDLKENVILGRMIPVGTGL 1505

 Score = 45 (20.9 bits), Expect = 1.3e-20, Sum P(5) = 1.3e-20
 Identities = 20/68 (29%), Positives = 30/68 (44%)

Query:  1018 RSDPSLSAQEILALSNETLDSKEFLQDTSENF-VRDIXXXXXXXXXXXXVTSHQDKVSQP 1076
             R D  L ++E + +  E   S E+L D S++  VRD             V S  D V + 
Sbjct:  1307 RFDKPLRSKERIIIQAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHD-VLKI 1365

Query:  1077 LREQILSH 1084
             L E+ L +
Sbjct:  1366 LGEKALHY 1373

 Score = 40 (19.1 bits), Expect = 4.2e-20, Sum P(5) = 4.2e-20
 Identities = 18/68 (26%), Positives = 30/68 (44%)

Query:   764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLE-RTTLGEVCEYI----EEV 818
             G+PR+ E+  A +  +  +I A +D     D     K R+  +   G   EY+    + +
Sbjct:  1280 GLPRVSELFEARKPKNAAVI-AEIDGVVRFDKPLRSKERIIIQAEDGTSAEYLIDKSKHI 1338

Query:   819 FVPDDSFI 826
              V D  FI
Sbjct:  1339 QVRDGEFI 1346

 Score = 37 (18.1 bits), Expect = 4.6e-07, Sum P(4) = 4.6e-07
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query:   760 LSQDGVPRIKEIINASRNISTP 781
             LSQ+ +   K ++ +S NI  P
Sbjct:   494 LSQEAIAECKVLMLSSMNILLP 515


>TAIR|locus:2061151 [details] [associations]
            symbol:NRPD1B "nuclear RNA polymerase D1B" species:3702
            "Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
            [GO:0003899 "DNA-directed RNA polymerase activity"
            evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
            [GO:0006351 "transcription, DNA-dependent" evidence=ISS]
            [GO:0000418 "DNA-directed RNA polymerase IV complex" evidence=IPI]
            [GO:0006306 "DNA methylation" evidence=RCA;IMP] [GO:0000419
            "DNA-directed RNA polymerase V complex" evidence=IDA;IPI]
            [GO:0030880 "RNA polymerase complex" evidence=IPI] [GO:0035194
            "posttranscriptional gene silencing by RNA" evidence=IMP]
            [GO:0005515 "protein binding" evidence=IPI] [GO:0005730 "nucleolus"
            evidence=IDA] [GO:0016604 "nuclear body" evidence=IDA] [GO:0030422
            "production of siRNA involved in RNA interference"
            evidence=IGI;IMP] [GO:0000278 "mitotic cell cycle" evidence=RCA]
            [GO:0000724 "double-strand break repair via homologous
            recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
            replication" evidence=RCA] [GO:0006275 "regulation of DNA
            replication" evidence=RCA] [GO:0006342 "chromatin silencing"
            evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
            evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
            [GO:0016444 "somatic cell DNA recombination" evidence=RCA]
            [GO:0016568 "chromatin modification" evidence=RCA] [GO:0031047
            "gene silencing by RNA" evidence=RCA] [GO:0048451 "petal formation"
            evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
            [GO:0051567 "histone H3-K9 methylation" evidence=RCA] [GO:0051726
            "regulation of cell cycle" evidence=RCA] InterPro:IPR000722
            InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
            InterPro:IPR007081 InterPro:IPR015801 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 Pfam:PF04998 SMART:SM00663 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0006355 GO:GO:0003677
            GO:GO:0006351 GO:GO:0005507 GO:GO:0048038 GO:GO:0009308
            Gene3D:3.10.450.40 GO:GO:0030422 GO:GO:0006306 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0016604 EMBL:AF002109 GO:GO:0003899
            eggNOG:COG0086 GO:GO:0000418 InterPro:IPR021602 Pfam:PF11523
            EMBL:AY826516 EMBL:AY927744 EMBL:DQ020656 IPI:IPI00537496
            PIR:D84824 PIR:E84824 RefSeq:NP_181532.2 UniGene:At.37106
            ProteinModelPortal:Q5D869 SMR:Q5D869 DIP:DIP-48678N IntAct:Q5D869
            STRING:Q5D869 PaxDb:Q5D869 PRIDE:Q5D869 EnsemblPlants:AT2G40030.1
            GeneID:818591 KEGG:ath:AT2G40030 TAIR:At2g40030
            HOGENOM:HOG000082864 InParanoid:Q5D869 KO:K16251 OMA:QSDSWDG
            PhylomeDB:Q5D869 ProtClustDB:CLSN2681712 Genevestigator:Q5D869
            GO:GO:0000419 Uniprot:Q5D869
        Length = 1976

 Score = 153 (58.9 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 36/107 (33%), Positives = 59/107 (55%)

Query:   330 IRPS-VISDLKSDNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGD 388
             ++P  V+     D DVV  NR P+ HK S+ A R  V    T + N  +C+P +ADFDGD
Sbjct:   394 LKPGQVVHRRVMDGDVVFINRPPTTHKHSLQALRVYVHEDNTVKINPLMCSPLSADFDGD 453

Query:   389 EMNVHLPQTEEARAEALP--SLHKLSIMAHRAK-VLMANKSNLVTPR 432
              +++  PQ+  A+AE +   S+ K  + +H  + +L     +L++ R
Sbjct:   454 CVHLFYPQSLSAKAEVMELFSVEKQLLSSHTGQLILQMGSDSLLSLR 500

 Score = 108 (43.1 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 23/81 (28%), Positives = 39/81 (48%)

Query:   117 PHGLLDRRMGTNQKEANCTTCGQNLSD-CVGHFGYIDLPLPVFHIGYFRCVINILQSICK 175
             P  L +  +G   +   C +CG    D C GHFGYI LP+P++H  +   +  +L  +C 
Sbjct:    40 PSQLTNAFLGLPLEFGKCESCGATEPDKCEGHFGYIQLPVPIYHPAHVNELKQMLSLLCL 99

Query:   176 NPTCARVLLGEEKAAGFRAKL 196
                C ++   +  + G   +L
Sbjct:   100 K--CLKIKKAKGTSGGLADRL 118

 Score = 84 (34.6 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query:   613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYD 668
             G V+  FF GL P E   H++  RE +V ++   AE G + + L+  L D+ +  D
Sbjct:   739 GIVKGCFFHGLDPYEEMAHSIAAREVIVRSSRGLAEPGTLFKNLMAVLRDIVITND 794

 Score = 66 (28.3 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 30/112 (26%), Positives = 48/112 (42%)

Query:  1284 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMK 1343
             +V + LG+  A    +  +   +      +   H +L+A+ MT  G +LG    G   + 
Sbjct:  1114 QVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLGFNSGGYKALT 1173

Query:  1344 ESVLNL-ASFENTS----DHLFD-AAFYGQTDCISGVSECIIMGLPMNVGTG 1389
              S LN+ A F   +       F+ AA    TD +S V      G  ++VGTG
Sbjct:  1174 RS-LNIKAPFTEATLIAPRKCFEKAAEKCHTDSLSTVVGSCSWGKRVDVGTG 1224

 Score = 54 (24.1 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 16/48 (33%), Positives = 21/48 (43%)

Query:   290 EVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISD 337
             EV ++   IP E    L     + +    IL  L VPPNC+     SD
Sbjct:   179 EVKEILRRIPEESRKKLTAKGHIPQEG-YILEYLPVPPNCLSVPEASD 225

 Score = 44 (20.5 bits), Expect = 3.1e-17, Sum P(6) = 3.1e-17
 Identities = 19/73 (26%), Positives = 31/73 (42%)

Query:  1116 EPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLH 1175
             E    VG LAA ++  P  +  L +   +    E ++EV +   +F       DR  +L+
Sbjct:   823 EAGEPVGVLAATAMSNPAYKAVLDSSPNSNSSWELMKEVLLCKVNFQ--NTTNDRRVILY 880

Query:  1176 LEVDIDSIRYCIE 1188
             L       R+C E
Sbjct:   881 LNECHCGKRFCQE 893

 Score = 44 (20.5 bits), Expect = 4.3e-15, Sum P(5) = 4.3e-15
 Identities = 12/50 (24%), Positives = 23/50 (46%)

Query:   948 EVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
             +V + LG+  A    +  +   +      +   H +L+A+ MT  G +LG
Sbjct:  1114 QVQELLGLSCAFEQAVQRLSASVRMVSKGVLKEHIILLANNMTCSGTMLG 1163

 Score = 37 (18.1 bits), Expect = 5.7e-06, Sum P(6) = 5.7e-06
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query:   407 SLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITG--GYLLTQKNAFFNR 460
             S+HK+  +A    +   +  NL+  ++   +    Q   TG  G  L+ K  F+ +
Sbjct:   662 SIHKVKEVAANFMLKSYSIRNLIDIKSNSAITKLVQQ--TGFLGLQLSDKKKFYTK 715


>UNIPROTKB|P0C507 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522331
            GO:GO:0003899 TIGRFAMs:TIGR02388 ProteinModelPortal:P0C507
            Gramene:P0C507 HOGENOM:HOG000154184 Genevestigator:P0C507
            Uniprot:P0C507
        Length = 1513

 Score = 119 (46.9 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             +Q++   GL+ TE+     G R+G+VDTAV+TA+ GY+ RRLV+ ++ + V+
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 110 (43.8 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:  1098 PSACKAEA--CREKYVRAQ-----IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             P  C++ +  C+  Y R+      +E   AVG +A QSIGEPGTQ+TL+TFH  G
Sbjct:   293 PFTCRSTSWICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347

 Score = 100 (40.3 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             +LGITR  L    +S ++ ASF+ T+  L  AA  G+ D + G+ E +++G  + VGTG 
Sbjct:  1396 LLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 1453

Query:  1391 IKLLQAVPRSE 1401
              K +   P+++
Sbjct:  1454 QKFVHRYPQNK 1464

 Score = 71 (30.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query:   953 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG-----TPVELKRL 1007
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK  V  +G     +P EL  L
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGL 1376

Query:  1008 LDDIIAKNSSRS-DPSLSAQEIL-ALSNETLDSKEFLQDTS 1046
             L    A+ + R+ D S+  + IL  ++  +L+++ F+ + S
Sbjct:  1377 LR---AERAGRALDESIYYRAILLGITRVSLNTQSFISEAS 1414

 Score = 65 (27.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE 712
             AA  G+ D + G+ E +++G  + VGTG  K +   P+++
Sbjct:  1425 AALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQNK 1464

 Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 17/79 (21%), Positives = 39/79 (49%)

Query:  1289 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKE--SV 1346
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK   + ++  G++ +     +
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373

Query:  1347 LNLASFENTSDHLFDAAFY 1365
             + L   E     L ++ +Y
Sbjct:  1374 IGLLRAERAGRALDESIYY 1392


>UNIPROTKB|P0C509 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
            GO:GO:0003899 eggNOG:COG0086 KO:K03046 ProtClustDB:CHL00117
            TIGRFAMs:TIGR02388 PIR:JQ0215 RefSeq:NP_039375.1
            ProteinModelPortal:P0C509 STRING:P0C509 GeneID:3131434
            KEGG:osa:3131434 Gramene:P0C509 Uniprot:P0C509
        Length = 1513

 Score = 119 (46.9 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             +Q++   GL+ TE+     G R+G+VDTAV+TA+ GY+ RRLV+ ++ + V+
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 110 (43.8 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:  1098 PSACKAEA--CREKYVRAQ-----IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             P  C++ +  C+  Y R+      +E   AVG +A QSIGEPGTQ+TL+TFH  G
Sbjct:   293 PFTCRSTSWICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347

 Score = 100 (40.3 bits), Expect = 1.8e-13, Sum P(3) = 1.8e-13
 Identities = 25/71 (35%), Positives = 42/71 (59%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             +LGITR  L    +S ++ ASF+ T+  L  AA  G+ D + G+ E +++G  + VGTG 
Sbjct:  1396 LLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 1453

Query:  1391 IKLLQAVPRSE 1401
              K +   P+++
Sbjct:  1454 QKFVHRYPQNK 1464

 Score = 71 (30.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query:   953 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG-----TPVELKRL 1007
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK  V  +G     +P EL  L
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGL 1376

Query:  1008 LDDIIAKNSSRS-DPSLSAQEIL-ALSNETLDSKEFLQDTS 1046
             L    A+ + R+ D S+  + IL  ++  +L+++ F+ + S
Sbjct:  1377 LR---AERAGRALDESIYYRAILLGITRVSLNTQSFISEAS 1414

 Score = 65 (27.9 bits), Expect = 0.00072, Sum P(2) = 0.00072
 Identities = 13/40 (32%), Positives = 24/40 (60%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE 712
             AA  G+ D + G+ E +++G  + VGTG  K +   P+++
Sbjct:  1425 AALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQNK 1464

 Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 17/79 (21%), Positives = 39/79 (49%)

Query:  1289 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKE--SV 1346
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK   + ++  G++ +     +
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373

Query:  1347 LNLASFENTSDHLFDAAFY 1365
             + L   E     L ++ +Y
Sbjct:  1374 IGLLRAERAGRALDESIYY 1392


>UNIPROTKB|P0C508 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AY522329
            GO:GO:0003899 ProtClustDB:CHL00117 TIGRFAMs:TIGR02388
            RefSeq:YP_654208.1 ProteinModelPortal:P0C508 GeneID:4126924
            Gramene:P0C508 Uniprot:P0C508
        Length = 1513

 Score = 119 (46.9 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             +Q++   GL+ TE+     G R+G+VDTAV+TA+ GY+ RRLV+ ++ + V+
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 110 (43.8 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:  1098 PSACKAEA--CREKYVRAQ-----IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             P  C++ +  C+  Y R+      +E   AVG +A QSIGEPGTQ+TL+TFH  G
Sbjct:   293 PFTCRSTSWICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347

 Score = 99 (39.9 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             +LGITR  L    +S ++ ASF+ T+  L  AA  G+ D + G+ E +++G  + VGTG 
Sbjct:  1396 LLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 1453

Query:  1391 IKLLQAVPRSE 1401
              K +   P+ +
Sbjct:  1454 QKFVHRYPQDK 1464

 Score = 71 (30.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query:   953 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG-----TPVELKRL 1007
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK  V  +G     +P EL  L
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGL 1376

Query:  1008 LDDIIAKNSSRS-DPSLSAQEIL-ALSNETLDSKEFLQDTS 1046
             L    A+ + R+ D S+  + IL  ++  +L+++ F+ + S
Sbjct:  1377 LR---AERAGRALDESIYYRAILLGITRVSLNTQSFISEAS 1414

 Score = 64 (27.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE 712
             AA  G+ D + G+ E +++G  + VGTG  K +   P+ +
Sbjct:  1425 AALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDK 1464

 Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 17/79 (21%), Positives = 39/79 (49%)

Query:  1289 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKE--SV 1346
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK   + ++  G++ +     +
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373

Query:  1347 LNLASFENTSDHLFDAAFY 1365
             + L   E     L ++ +Y
Sbjct:  1374 IGLLRAERAGRALDESIYY 1392


>UNIPROTKB|Q6ENI2 [details] [associations]
            symbol:rpoC2 "DNA-directed RNA polymerase subunit beta''"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            HAMAP:MF_01324 InterPro:IPR007081 InterPro:IPR007083
            InterPro:IPR012756 Pfam:PF04998 Pfam:PF05000 GO:GO:0009507
            GO:GO:0009536 GO:GO:0003677 GO:GO:0006351 EMBL:AP006728
            GO:GO:0003899 RefSeq:YP_052741.1 ProteinModelPortal:Q6ENI2
            GeneID:2885930 Gramene:Q6ENI2 ProtClustDB:CHL00117
            TIGRFAMs:TIGR02388 Uniprot:Q6ENI2
        Length = 1513

 Score = 119 (46.9 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 22/52 (42%), Positives = 37/52 (71%)

Query:   615 VQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQ 666
             +Q++   GL+ TE+     G R+G+VDTAV+TA+ GY+ RRLV+ ++ + V+
Sbjct:   165 IQSNLREGLSLTEYIISCYGARKGVVDTAVRTADAGYLTRRLVEVVQHIIVR 216

 Score = 110 (43.8 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 25/55 (45%), Positives = 34/55 (61%)

Query:  1098 PSACKAEA--CREKYVRAQ-----IEPATAVGALAAQSIGEPGTQMTLKTFHFAG 1145
             P  C++ +  C+  Y R+      +E   AVG +A QSIGEPGTQ+TL+TFH  G
Sbjct:   293 PFTCRSTSWICQLCYGRSSTHGDLVELGEAVGVIAGQSIGEPGTQLTLRTFHTGG 347

 Score = 99 (39.9 bits), Expect = 2.3e-13, Sum P(3) = 2.3e-13
 Identities = 25/71 (35%), Positives = 41/71 (57%)

Query:  1331 VLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGL 1390
             +LGITR  L    +S ++ ASF+ T+  L  AA  G+ D + G+ E +++G  + VGTG 
Sbjct:  1396 LLGITRVSLNT--QSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGIIPVGTGF 1453

Query:  1391 IKLLQAVPRSE 1401
              K +   P+ +
Sbjct:  1454 QKFVHRYPQDK 1464

 Score = 71 (30.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
 Identities = 28/101 (27%), Positives = 54/101 (53%)

Query:   953 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNG-----TPVELKRL 1007
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK  V  +G     +P EL  L
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGL 1376

Query:  1008 LDDIIAKNSSRS-DPSLSAQEIL-ALSNETLDSKEFLQDTS 1046
             L    A+ + R+ D S+  + IL  ++  +L+++ F+ + S
Sbjct:  1377 LR---AERAGRALDESIYYRAILLGITRVSLNTQSFISEAS 1414

 Score = 64 (27.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query:   673 AAFYGQTDCISGVSECIIMGLPMNVGTGLIKLLQAVPRSE 712
             AA  G+ D + G+ E +++G  + VGTG  K +   P+ +
Sbjct:  1425 AALRGRIDWLKGLKENVVLGGIIPVGTGFQKFVHRYPQDK 1464

 Score = 52 (23.4 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
 Identities = 17/79 (21%), Positives = 39/79 (49%)

Query:  1289 LGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKE--SV 1346
             L I  +R +++ +I+ V  + G+ I  RH  ++   +TSK   + ++  G++ +     +
Sbjct:  1317 LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSK---VRVSEDGMSNVFSPGEL 1373

Query:  1347 LNLASFENTSDHLFDAAFY 1365
             + L   E     L ++ +Y
Sbjct:  1374 IGLLRAERAGRALDESIYY 1392


>UNIPROTKB|P0C504 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
            Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
            Uniprot:P0C504
        Length = 682

 Score = 188 (71.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 56/169 (33%), Positives = 88/169 (52%)

Query:   288 PLEV-LQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVL 346
             PLE+ ++LF+   + D   L+     S     I  R +     I   ++ ++   + V+L
Sbjct:   398 PLEIAIKLFQLFVIRD---LITKRATSNVR--IAKRKIWEKEPIVWEILQEVMRGHPVLL 452

Query:   347 FNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALP 406
              NR P+LH+L I A +  ++  RT   +  VC  +NADFDGD+M VHLP + EA+AEA  
Sbjct:   453 -NRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEA-- 509

Query:   407 SLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 455
                         ++LM +  NL++P  G+ +   TQD + G Y+LT  N
Sbjct:   510 ------------RLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGN 546

 Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 26/109 (23%), Positives = 45/109 (41%)

Query:    76 KVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQ---DPQRTPIPHGLLDRRMGT-NQKE 131
             K    G + G VT+      ++  +     L+C+    P ++ I      R  G  N+ E
Sbjct:    26 KTLPNGEVVGEVTRPSTFHYKTD-KPEKDGLFCERIFGPIKSRICACGNSRASGAENEDE 84

Query:   132 ANCTTCGQNLSDC-VGHF--GYIDLPLPVFHIGYFRCVINILQSICKNP 177
               C  CG    D  +  +  GYI L  PV H+ Y + + + + ++   P
Sbjct:    85 RFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKP 133


>UNIPROTKB|P0C505 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
            InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
            HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
            GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
        Length = 682

 Score = 188 (71.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 56/169 (33%), Positives = 88/169 (52%)

Query:   288 PLEV-LQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVL 346
             PLE+ ++LF+   + D   L+     S     I  R +     I   ++ ++   + V+L
Sbjct:   398 PLEIAIKLFQLFVIRD---LITKRATSNVR--IAKRKIWEKEPIVWEILQEVMRGHPVLL 452

Query:   347 FNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALP 406
              NR P+LH+L I A +  ++  RT   +  VC  +NADFDGD+M VHLP + EA+AEA  
Sbjct:   453 -NRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEA-- 509

Query:   407 SLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 455
                         ++LM +  NL++P  G+ +   TQD + G Y+LT  N
Sbjct:   510 ------------RLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGN 546

 Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 26/109 (23%), Positives = 45/109 (41%)

Query:    76 KVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQ---DPQRTPIPHGLLDRRMGT-NQKE 131
             K    G + G VT+      ++  +     L+C+    P ++ I      R  G  N+ E
Sbjct:    26 KTLPNGEVVGEVTRPSTFHYKTD-KPEKDGLFCERIFGPIKSRICACGNSRASGAENEDE 84

Query:   132 ANCTTCGQNLSDC-VGHF--GYIDLPLPVFHIGYFRCVINILQSICKNP 177
               C  CG    D  +  +  GYI L  PV H+ Y + + + + ++   P
Sbjct:    85 RFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKP 133


>UNIPROTKB|P0C506 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
            evidence=IC] InterPro:IPR000722 InterPro:IPR006592
            InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
            Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
            GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
            GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
            GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
            PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
            STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
            KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
            Uniprot:P0C506
        Length = 682

 Score = 188 (71.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 56/169 (33%), Positives = 88/169 (52%)

Query:   288 PLEV-LQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVL 346
             PLE+ ++LF+   + D   L+     S     I  R +     I   ++ ++   + V+L
Sbjct:   398 PLEIAIKLFQLFVIRD---LITKRATSNVR--IAKRKIWEKEPIVWEILQEVMRGHPVLL 452

Query:   347 FNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALP 406
              NR P+LH+L I A +  ++  RT   +  VC  +NADFDGD+M VHLP + EA+AEA  
Sbjct:   453 -NRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEA-- 509

Query:   407 SLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 455
                         ++LM +  NL++P  G+ +   TQD + G Y+LT  N
Sbjct:   510 ------------RLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGN 546

 Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 26/109 (23%), Positives = 45/109 (41%)

Query:    76 KVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQ---DPQRTPIPHGLLDRRMGT-NQKE 131
             K    G + G VT+      ++  +     L+C+    P ++ I      R  G  N+ E
Sbjct:    26 KTLPNGEVVGEVTRPSTFHYKTD-KPEKDGLFCERIFGPIKSRICACGNSRASGAENEDE 84

Query:   132 ANCTTCGQNLSDC-VGHF--GYIDLPLPVFHIGYFRCVINILQSICKNP 177
               C  CG    D  +  +  GYI L  PV H+ Y + + + + ++   P
Sbjct:    85 RFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKP 133


>UNIPROTKB|Q6ENI3 [details] [associations]
            symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
            species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
            InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
            InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
            SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
            GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
            GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
            GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
            Uniprot:Q6ENI3
        Length = 682

 Score = 188 (71.2 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 56/169 (33%), Positives = 88/169 (52%)

Query:   288 PLEV-LQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCIRPSVISDLKSDNDVVL 346
             PLE+ ++LF+   + D   L+     S     I  R +     I   ++ ++   + V+L
Sbjct:   398 PLEIAIKLFQLFVIRD---LITKRATSNVR--IAKRKIWEKEPIVWEILQEVMRGHPVLL 452

Query:   347 FNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEARAEALP 406
              NR P+LH+L I A +  ++  RT   +  VC  +NADFDGD+M VHLP + EA+AEA  
Sbjct:   453 -NRAPTLHRLGIQAFQPTLVEGRTICLHPLVCKGFNADFDGDQMAVHLPLSLEAQAEA-- 509

Query:   407 SLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKN 455
                         ++LM +  NL++P  G+ +   TQD + G Y+LT  N
Sbjct:   510 ------------RLLMFSHMNLLSPAIGDPICVPTQDMLIGLYVLTIGN 546

 Score = 66 (28.3 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
 Identities = 26/109 (23%), Positives = 45/109 (41%)

Query:    76 KVFFRGLIEGTVTKEDRVQQQSHIQIVSKNLYCQ---DPQRTPIPHGLLDRRMGT-NQKE 131
             K    G + G VT+      ++  +     L+C+    P ++ I      R  G  N+ E
Sbjct:    26 KTLPNGEVVGEVTRPSTFHYKTD-KPEKDGLFCERIFGPIKSRICACGNSRASGAENEDE 84

Query:   132 ANCTTCGQNLSDC-VGHF--GYIDLPLPVFHIGYFRCVINILQSICKNP 177
               C  CG    D  +  +  GYI L  PV H+ Y + + + + ++   P
Sbjct:    85 RFCQKCGVEFVDSRIRRYQMGYIKLACPVTHVWYLKGLPSYIANLLDKP 133


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.136   0.397    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0     1423      1411   0.00091  124 3  11 22  0.37    34
                                                     39  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  89
  No. of states in DFA:  623 (66 KB)
  Total size of DFA:  553 KB (2250 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  118.34u 0.10s 118.44t   Elapsed:  00:00:50
  Total cpu time:  118.41u 0.10s 118.51t   Elapsed:  00:00:51
  Start:  Thu Aug 15 13:14:58 2013   End:  Thu Aug 15 13:15:49 2013

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