RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13846
(1423 letters)
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 221 bits (563), Expect = 7e-59
Identities = 75/342 (21%), Positives = 149/342 (43%), Gaps = 27/342 (7%)
Query: 1080 QILSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQMTL- 1138
+IL+ + + A+ + K +R+ IE T A I +
Sbjct: 1102 EILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIASEIYYDPDPRSTV 1161
Query: 1139 -----KTFHFAGEVCEYIEEVFVPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGI 1193
+ + + E S L++L++DR + ++ + + I++T
Sbjct: 1162 IPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMGQVGERIKQTFKN 1221
Query: 1194 SGHLTVSGHS-------FLILKPKDSSKSFNSKMYQM-----KQLLPSVVIKGVQGINRA 1241
+ S + +++PK ++ M +L ++ ++GV+ I R
Sbjct: 1222 DLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLENITLRGVENIERV 1281
Query: 1242 VIHEEDVEGVT---------KYKLLVEGDNLRDVMATYGVKGVKCSSNNTYEVYKTLGIE 1292
V+ + D + + ++ L +G NL +VM G+ + +N+ ++ + LGIE
Sbjct: 1282 VMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTNSFIDIMEVLGIE 1341
Query: 1293 AARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGITRHGLAKMKESVLNLASF 1352
A R+ + E+ V+ + G +++RH L+ D+MT++G + +TRHG + L SF
Sbjct: 1342 AGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTSVTRHGFNRSNTGALMRCSF 1401
Query: 1353 ENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 1394
E T + LF+A + D GVSE +I+G +GTG ++
Sbjct: 1402 EETVEILFEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM 1443
Score = 181 bits (461), Expect = 1e-46
Identities = 64/247 (25%), Positives = 107/247 (43%), Gaps = 18/247 (7%)
Query: 91 DRVQQQSHIQIVSKNLYCQDPQRTPIPHGLLDRRMGTNQKEANCTTCGQNLSDCVGHFGY 150
+ V+ S +I + R GL D R+G+ + C TC + +++C GHFG+
Sbjct: 24 EEVRAISVAKIRFPETMDETQTR-AKIGGLNDPRLGSIDRNLKCQTCQEGMNECPGHFGH 82
Query: 151 IDLPLPVFHIGYFRCVINILQSICKNPTCARVLLGEEKAAGFRAKLRNPALSYLVRKSLK 210
IDL PVFH+G+ + + + +C + C ++LL E +L AL+ K
Sbjct: 83 IDLAKPVFHVGFIAKIKKVCECVCMH--CGKLLLDEHN------ELMRQALAIKDSKKRF 134
Query: 211 KKILETTKKVSVCPHCGEINGVVKKCGLLKISHEKYKNRTKKKDAIVEDLLAEYNEAVKF 270
I K VC ++ L+ T +KD + L+ + +
Sbjct: 135 AAIWTLCKTKMVCET--DVPSEDDPTQLVSRGGCGNTQPTIRKDGL--KLVGSWKKDRAT 190
Query: 271 NPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIPLLLMNAELSKPSDLILTRLLVPPNCI 330
E + L+ E+L +F+ I ++D L N S+P +ILT L VPP +
Sbjct: 191 GDADEPELRV-----LSTEEILNIFKHISVKDFTSLGFNEVFSRPEWMILTCLPVPPPPV 245
Query: 331 RPSVISD 337
RPS+ +
Sbjct: 246 RPSISFN 252
Score = 157 bits (397), Expect = 4e-39
Identities = 70/293 (23%), Positives = 133/293 (45%), Gaps = 53/293 (18%)
Query: 758 YKLSQDGVPRIKEIINASRNISTPIITAYLDK--DTDLDYARIVKGRLERTTLGEVCEYI 815
K GVPR+KEI+N ++N+ TP +T YL+ D + A++++ +E TTL V
Sbjct: 1090 SKKVTSGVPRLKEILNVAKNMKTPSLTVYLEPGHAADQEQAKLIRSAIEHTTLKSVTIAS 1149
Query: 816 EEVFVPDDSFILIKLDMDRIR--------------------LLHLEVD----------ID 845
E + PD +I D + I+ LL LE+D +
Sbjct: 1150 EIYYDPDPRSTVIPEDEEIIQLHFSLLDEEAEQSFDQQSPWLLRLELDRAAMNDKDLTMG 1209
Query: 846 SIRYCIERTRGISGHLTVSGHS-------FLILKPKDSSKSFNSKMYQM-----KQLLPS 893
+ I++T + S + +++PK ++ M +L +
Sbjct: 1210 QVGERIKQTFKNDLFVIWSEDNDEKLIIRCRVVRPKSLDAETEAEEDHMLKKIENTMLEN 1269
Query: 894 VVIKGVQGINRAVIHEEDVEGVT---------KYKLLVEGDNLRDVMATYGVKGVKCSSN 944
+ ++GV+ I R V+ + D + + ++ L +G NL +VM G+ + +N
Sbjct: 1270 ITLRGVENIERVVMMKYDRKVPSPTGEYVKEPEWVLETDGVNLSEVMTVPGIDPTRIYTN 1329
Query: 945 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
+ ++ + LGIEA R+ + E+ V+ + G +++RH L+ D+MT++G +
Sbjct: 1330 SFIDIMEVLGIEAGRAALYKEVYNVIASDGSYVNYRHMALLVDVMTTQGGLTS 1382
Score = 143 bits (361), Expect = 8e-35
Identities = 89/270 (32%), Positives = 140/270 (51%), Gaps = 36/270 (13%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
DND VLFNRQPSLHK+S+MAHR KV+P+ TFR N V +PYNADFDGDEMN+H+PQ+EE
Sbjct: 437 DNDPVLFNRQPSLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEET 496
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNR 460
RAE L A +V+P++ + + QD + G LT ++ F
Sbjct: 497 RAE--------------LSQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIEL 542
Query: 461 AQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCPVN 520
Q + + + D G+I + P +W+GKQI S+ + PN
Sbjct: 543 DQVLNMLYWV----PDWDGVIPTPAIIKPKP--------LWSGKQILSVAI-PNGIHLQR 589
Query: 521 ANLKTKGRAYTANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKANVFYILLRDFGEDV 580
+ T +D+ +++ + +++ G ++K T+GS + +++ R+ G V
Sbjct: 590 FDEGTT--------LLSPKDNGMLIIDGQIIFGVVEKKTVGS-SNGGLIHVVTREKGPQV 640
Query: 581 AVTAMWRLSRMTSFYLMNRGFSIGIGDVTP 610
+ ++ +F+L++ GFS GIGD
Sbjct: 641 CAKLFGNIQKVVNFWLLHNGFSTGIGDTIA 670
Score = 73.3 bits (179), Expect = 2e-13
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMS 670
GFV+NS+ GLTP EFFFH MGGREGL+DTAVKTAETGY+QRRLVK+LED+ V YD +
Sbjct: 797 GFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTAETGYIQRRLVKALEDIMVHYDNT 854
Score = 54.1 bits (129), Expect = 1e-07
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKLL 705
F+A + D GVSE +I+G +GTG ++
Sbjct: 1409 FEAGASAELDDCRGVSENVILGQMAPIGTGAFDVM 1443
Score = 53.7 bits (128), Expect = 2e-07
Identities = 49/251 (19%), Positives = 98/251 (39%), Gaps = 33/251 (13%)
Query: 926 NLRDVMATYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLV----MENHGMSIDFRH 981
L + V + N+ V + + E E + + + +R
Sbjct: 839 RLVKALEDIMVHYDNTTRNSLGNVIQFIYGEDGMDAAHIEKQSLDTIGGSDAAFEKRYRV 898
Query: 982 PMLVAD------LMTSKGEVLGN-----------GTPVELKRLLDDIIAKNSSRSDPSLS 1024
+L D L+ S E+LG+ V+ ++ L ++ + ++
Sbjct: 899 DLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKDRKFLREVFVDGEANWPLPVN 958
Query: 1025 AQEILALSNETLDSKEFLQDTSENFVRDIKKFLEEFSKKESVTSHQDKVSQPLREQILSH 1084
+ I+ + +T S+ ++DI +++ + V ++++ Q + ++
Sbjct: 959 IRRIIQNAQQTFHIDH--TKPSDLTIKDIVLGVKDLQENLLVLRGKNEIIQNAQRDAVTL 1016
Query: 1085 -----QDKIGHGRESNPFPSACKA-----EACREKYVRAQIEPATAVGALAAQSIGEPGT 1134
+ ++ R + +A +++R+ + P VG LAAQSIGEP T
Sbjct: 1017 FCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVHPGEMVGVLAAQSIGEPAT 1076
Query: 1135 QMTLKTFHFAG 1145
QMTL TFHFAG
Sbjct: 1077 QMTLNTFHFAG 1087
Score = 45.2 bits (106), Expect = 6e-05
Identities = 18/97 (18%), Positives = 32/97 (32%)
Query: 20 QVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQKNAFFNRAQTMRIASTLIAGRKVFF 79
L A +V+P++ + + QD + G LT ++ F Q + + + V
Sbjct: 501 SQLCAVPLQIVSPQSNKPCMGIVQDTLCGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIP 560
Query: 80 RGLIEGTVTKEDRVQQQSHIQIVSKNLYCQDPQRTPI 116
I Q S +L D T +
Sbjct: 561 TPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLL 597
>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus thermophilus
[TaxId: 274]}
Length = 1504
Score = 192 bits (489), Expect = 5e-50
Identities = 72/305 (23%), Positives = 130/305 (42%), Gaps = 48/305 (15%)
Query: 1107 REKYVRAQIEPATAVGALAAQSIGEPGTQMTLKTFHFAGEVCE--------YIEEVF--- 1155
+ + + AVG +AAQSIGEPGTQ+T++TFH G + E+F
Sbjct: 1206 YDLSMARPVSIGEAVGIVAAQSIGEPGTQLTMRTFHTGGVAGAADITQGLPRVIELFEAR 1265
Query: 1156 VPDDSFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKD---S 1212
P ++ ++D ++ +E + + +E + G S + + L++K D +
Sbjct: 1266 RPKAKAVISEID----GVVRIEETEEKLSVFVE-SEGFSKEYKLPKEARLLVKDGDYVEA 1320
Query: 1213 SKSFNSKMYQMKQLLPSVVIKGVQGINRAVIHE----EDVEGVTKYKLLVEGDNLRDVMA 1268
+ QLL KG + + R ++ E +GV + +E +R +M
Sbjct: 1321 GQPLTRGAIDPHQLLE---AKGPEAVERYLVEEIQKVYRAQGVKLHDKHIE-IVVRQMMK 1376
Query: 1269 TYGVKGVKCSSNNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSK 1328
V S +V + +EA ++ E K + K
Sbjct: 1377 YVEVTDPGDSRLLEGQVLEKWDVEALNERLIAEGK-------------------TPVAWK 1417
Query: 1329 GEVLGITRHGLAKMKESVLNLASFENTSDHLFDAAFYGQTDCISGVSECIIMGLPMNVGT 1388
++G+T+ L+ +S L+ ASF+NT+ L +AA G+ D + G+ E +I+G + GT
Sbjct: 1418 PLLMGVTKSALST--KSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIPAGT 1475
Query: 1389 GLIKL 1393
G +
Sbjct: 1476 GSDFV 1480
Score = 169 bits (429), Expect = 7e-43
Identities = 61/277 (22%), Positives = 102/277 (36%), Gaps = 25/277 (9%)
Query: 341 DNDVVLFNRQPSLHKLSIMAHRAKVLPHRTFRFNECVCTPYNADFDGDEMNVHLPQTEEA 400
VVL NR P+LH+L I A + ++ ++ + + VC +NADFDGD+M VH+P + A
Sbjct: 695 HGKVVLLNRAPTLHRLGIQAFQPVLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFA 754
Query: 401 RAEALPSLHKLSIMAHRAKVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ-----KN 455
+AE A++ M + NL++P +GE L ++D I G Y +TQ K
Sbjct: 755 QAE--------------ARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKG 800
Query: 456 AFFNRAQTMRIASTLIADTSDICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNR 515
A A L A + V V + +
Sbjct: 801 AGLEFATPEEA---LAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIV 857
Query: 516 DCPVNANLKTKGRAY-TANEEFCHRDSYVILRNSELLAGSMDKSTLGSGGKA--NVFYIL 572
D ++ G+ T+ E +A + + + + ++ Y
Sbjct: 858 DLQDVVTVRYMGKRLETSPGRILFARIVAEAVEDEKVAWELIQLDVPQEKNSLKDLVYQA 917
Query: 573 LRDFGEDVAVTAMWRLSRMTSFYLMNRGFSIGIGDVT 609
G + + L + G +IGI D
Sbjct: 918 FLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAV 954
Score = 85.2 bits (210), Expect = 4e-17
Identities = 22/63 (34%), Positives = 37/63 (58%)
Query: 613 GFVQNSFFSGLTPTEFFFHTMGGREGLVDTAVKTAETGYMQRRLVKSLEDLCVQYDMSFD 672
V++SF GLT E+F + G R+G DTA++TA++GY+ R+LV ++ V+
Sbjct: 1054 VPVRSSFREGLTVLEYFISSHGARKGGADTALRTADSGYLTRKLVDVTHEIVVREADCGT 1113
Query: 673 AAF 675
+
Sbjct: 1114 TNY 1116
Score = 77.9 bits (191), Expect = 7e-15
Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 65/234 (27%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARIVKGRLERTTLGEVCEYIEEVFVPDD 823
G+PR+ E+ A R + +I+ +D RI + + + E + +E +P +
Sbjct: 1254 GLPRVIELFEARRPKAKAVIS-EIDG-----VVRIEETEEKLSVFVESEGFSKEYKLPKE 1307
Query: 824 SFILIKLDMDRIRLLHLEVDIDSIRYCIERTRGISGHLTVSGHSFLILKPKDSSKSFNSK 883
+ +L+K D D + + + +G
Sbjct: 1308 ARLLVK-DGDYVEAGQPLTRGAIDPHQLLEAKGPEA------------------------ 1342
Query: 884 MYQMKQLLPSVVIKGVQGINRAVIHEEDVEGVTKYKLLVEGDNLRDVMATYGVKGVKCSS 943
+ +++ +Q + R +GV + +E +R +M V S
Sbjct: 1343 -------VERYLVEEIQKVYR-------AQGVKLHDKHIE-IVVRQMMKYVEVTDPGDSR 1387
Query: 944 NNTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLG 997
+V + +EA ++ E K + K ++G
Sbjct: 1388 LLEGQVLEKWDVEALNERLIAEGK-------------------TPVAWKPLLMG 1422
Score = 52.9 bits (126), Expect = 3e-07
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 671 FDAAFYGQTDCISGVSECIIMGLPMNVGTGLIKL 704
+AA G+ D + G+ E +I+G + GTG +
Sbjct: 1447 TEAAIAGKKDELIGLKENVILGRLIPAGTGSDFV 1480
Score = 44.8 bits (105), Expect = 9e-05
Identities = 18/93 (19%), Positives = 41/93 (44%), Gaps = 2/93 (2%)
Query: 245 KYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAIPLEDIP 304
+ R + I + AE + + ++EA +K L++ + + +A ++
Sbjct: 440 RNVVRVVESYDIDARMGAEAIQQLLKELDLEALEKE-LLEEMKHPSRARRAKARKRLEVV 498
Query: 305 LLLMNAELSKPSDLILTRLLVPPNCIRPSVISD 337
+++ ++P +IL + V P +RP V D
Sbjct: 499 RAFLDSG-NRPEWMILEAVPVLPPDLRPMVQVD 530
Score = 38.2 bits (88), Expect = 0.008
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 11 LYYATRNCWQVLMANKSNLVTPRNGELLIAATQDFITGGYLLTQ 54
L + ++ M + NL++P +GE L ++D I G Y +TQ
Sbjct: 750 LSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQ 793
Score = 36.3 bits (83), Expect = 0.030
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 945 NTYEVYKTLGIEAARSTIMTEIKLVMENHGMSIDFRHPMLVADLMTSKGEVLGNGT 1000
+ +++ + G EA ++ EI+ V G+ + +H +V M EV G
Sbjct: 1330 DPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKHIEIVVRQMMKYVEVTDPGD 1385
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 30.6 bits (69), Expect = 0.32
Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 1022 SLSAQEILALSNETLDSKEFLQDTSENFVRDIKKFLEEFSKKESVTSHQDKVSQPLREQI 1081
+LS +E + LQ+ + +K +L++ + + ++Q Q
Sbjct: 5 NLSPEEAAHQKAVV---ETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQH 61
Query: 1082 LSH 1084
L+
Sbjct: 62 LNK 64
>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
[TaxId: 562]}
Length = 428
Score = 31.7 bits (71), Expect = 0.63
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 13/112 (11%)
Query: 1079 EQILSHQDKIGHGRESNPFPSACKAEACREKYVRAQIEPATAVGALAAQSIGEPGTQM-T 1137
+ + ++G+ + E Y EP AV A + PG
Sbjct: 317 RRKIWQLKELGYAAVDDETTQQTMRELKELGYT---SEPHAAVAYRALRDQLNPGEYGLF 373
Query: 1138 LKTFH---FAGEVCEYI-EEVFVPDDSFILIKLDMDR-IRLLHLEVDIDSIR 1184
L T H F V + E + +P + + D + +L D ++R
Sbjct: 374 LGTAHPAKFKESVEAILGETLDLPKE----LAERADLPLLSHNLPADFAALR 421
>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC
{Human (Homo sapiens), E2 J2 [TaxId: 9606]}
Length = 157
Score = 28.2 bits (62), Expect = 4.7
Identities = 13/72 (18%), Positives = 24/72 (33%), Gaps = 12/72 (16%)
Query: 476 DICGIIKRFSWRSWNPVVFVRTAVIWTGKQIFSLILKPNRDCP-------VNANLKTKGR 528
+C I F +WNP V T + + S +++ L +
Sbjct: 81 RLCLSITDFHPDTWNPAWSVSTILT----GLLSFMVEKGPTLGSIETSDFTKRQLAVQSL 136
Query: 529 AYTA-NEEFCHR 539
A+ ++ FC
Sbjct: 137 AFNLKDKVFCEL 148
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore
domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 27.2 bits (60), Expect = 4.7
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 764 GVPRIKEIINASRNISTPIITAYLDKDTDLDYARI-VKGRLER 805
G+ + + + S + T IT + TD D A++ V+ +L+
Sbjct: 34 GIDNLMYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQL 76
>d1usua_ d.14.1.8 (A:) Heat shock protein hsp82 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 256
Score = 27.6 bits (61), Expect = 9.0
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 241 ISHEKYKNRTKKKDAIVEDLLAEYNEAVKFNPEIEAHKKFGLIQTLNPLEVLQLFEAI 298
S Y R + + + E ++V+ +P ++A K EVL L + I
Sbjct: 184 TSLTDYVTRMPEHQKNIYYITGESLKSVEKSPFLDALKAKN-------FEVLFLTDPI 234
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.136 0.396
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 5,179,495
Number of extensions: 248250
Number of successful extensions: 579
Number of sequences better than 10.0: 1
Number of HSP's gapped: 564
Number of HSP's successfully gapped: 23
Length of query: 1423
Length of database: 2,407,596
Length adjustment: 97
Effective length of query: 1326
Effective length of database: 1,075,786
Effective search space: 1426492236
Effective search space used: 1426492236
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.0 bits)