Query psy13847
Match_columns 91
No_of_seqs 97 out of 99
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:58:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13847.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13847hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ozj_A SMAD 3; MAD homology do 100.0 1.4E-40 4.9E-45 240.0 3.9 86 1-86 1-89 (144)
2 3kmp_A SMAD1-MH1; protein-DNA 100.0 1.4E-39 4.9E-44 229.4 3.8 79 7-85 1-80 (124)
3 3qsv_A SMAD4, mothers against 100.0 6.7E-39 2.3E-43 228.4 4.0 82 4-85 4-87 (132)
4 2rnn_A E3 SUMO-protein ligase 50.2 44 0.0015 22.7 5.7 46 10-55 62-114 (114)
5 2ljw_A ALR2454 protein; novel 41.6 22 0.00074 24.3 3.0 42 31-72 53-97 (110)
6 1e6y_B Methyl-coenzyme M reduc 36.5 31 0.0011 28.4 3.6 40 30-69 29-71 (433)
7 1vmc_A Stromal cell-derived fa 35.8 20 0.0007 21.3 2.0 17 22-38 55-71 (71)
8 1ich_A TNF-1, tumor necrosis f 35.5 28 0.00096 23.4 2.8 52 10-66 56-112 (112)
9 3sqg_B Methyl-coenzyme M reduc 34.2 38 0.0013 27.9 3.8 40 30-69 30-72 (433)
10 1hbn_B Methyl-coenzyme M reduc 33.9 36 0.0012 28.1 3.6 40 30-69 32-74 (442)
11 3gty_S TF, 30S ribosomal prote 29.3 1.4E+02 0.0047 20.6 5.6 52 7-58 11-65 (149)
12 2pv4_A Uncharacterized protein 28.1 25 0.00084 25.2 1.6 17 26-42 113-129 (145)
13 3t98_A Nuclear pore complex pr 27.8 46 0.0016 19.7 2.5 20 28-49 30-49 (51)
14 2l69_A Rossmann 2X3 fold prote 27.4 26 0.00089 24.3 1.5 42 23-65 59-110 (134)
15 1ha6_A Macrophage inflammatory 26.7 40 0.0014 20.0 2.1 19 22-40 50-68 (70)
16 1wgl_A TOLL-interacting protei 24.0 95 0.0032 18.3 3.5 28 4-36 19-47 (59)
17 4b4t_W RPN10, 26S proteasome r 23.9 87 0.003 23.4 4.0 39 28-66 121-176 (268)
18 1hus_A Ribosomal protein S7; R 23.5 1.3E+02 0.0045 20.9 4.7 52 7-58 17-71 (155)
19 1rss_A Ribosomal protein S7; R 22.5 1.4E+02 0.0048 20.7 4.7 52 7-58 13-67 (151)
20 1elk_A Target of MYB1; superhe 22.1 99 0.0034 20.9 3.7 31 26-56 49-86 (157)
21 2c5i_P Vacuolar protein sortin 21.7 26 0.0009 18.9 0.5 9 73-81 3-11 (29)
22 3i1m_G 30S ribosomal protein S 21.6 2.3E+02 0.0078 20.3 5.7 52 7-58 18-72 (179)
23 1tvx_A NAP-2, neutrophil activ 21.5 56 0.0019 19.8 2.1 17 22-38 54-70 (75)
24 3gv3_A CXCL12 protein; SDF, ch 21.5 36 0.0012 19.9 1.2 15 22-36 48-62 (63)
25 1m8a_A Small inducible cytokin 21.1 32 0.0011 20.4 0.9 18 22-39 50-67 (70)
26 1mgs_A Human melanoma growth s 20.5 68 0.0023 19.1 2.3 17 22-38 53-69 (73)
27 1icw_A Interleukin-8, IL-8; cy 20.3 70 0.0024 19.1 2.3 17 22-38 52-68 (72)
No 1
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=100.00 E-value=1.4e-40 Score=239.97 Aligned_cols=86 Identities=64% Similarity=0.910 Sum_probs=77.0
Q ss_pred CCCCCCCCHHHHHHHhhhccCC---CcchhHHHHHHHHHHHhhhcCcHHHHHHHHhcCCCCCcceeecccccccccccCc
Q psy13847 1 MTSLFPFTPPIVKKLLGWKKGD---GEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPRLQFEDLQQSGV 77 (91)
Q Consensus 1 ~~~~~~~~~~~Vk~LL~wkqg~---eeek~aeKAIkSLVKKLKk~~~le~Le~Altt~~~~tkCVTIpRslDGRLQVs~r 77 (91)
|++||+|++|+||+||||+||+ +||+|++|||+|||||||++++||+|++||+++|.+|+||||||+|||||||+||
T Consensus 1 ~~~~~~~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~~~~Le~L~~AV~s~g~~t~CV~iprsldgRlqv~~r 80 (144)
T 1ozj_A 1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIPRSLDGRLQVSHR 80 (144)
T ss_dssp ------CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCCTTSCCCEEECCTTSCEEETTE
T ss_pred CCccccCCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcccccHHHHHHHHhCCCCCCCeEEcccCCCccccccCc
Confidence 7899999999999999999665 8999999999999999999779999999999999899999999999999999999
Q ss_pred CCCceEEee
Q psy13847 78 CSSPVALSW 86 (91)
Q Consensus 78 KglPhviy~ 86 (91)
||+|||||-
T Consensus 81 k~~PHVi~c 89 (144)
T 1ozj_A 81 KGLPHVIYC 89 (144)
T ss_dssp EECHHHHHH
T ss_pred cCCCeeEEE
Confidence 999999983
No 2
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1
Probab=100.00 E-value=1.4e-39 Score=229.43 Aligned_cols=79 Identities=51% Similarity=0.767 Sum_probs=77.2
Q ss_pred CCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhh-cCcHHHHHHHHhcCCCCCcceeecccccccccccCcCCCceEEe
Q psy13847 7 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKK-SNGLDELEKAITTQDPNTKCVTIPRLQFEDLQQSGVCSSPVALS 85 (91)
Q Consensus 7 ~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk-~~~le~Le~Altt~~~~tkCVTIpRslDGRLQVs~rKglPhviy 85 (91)
||||+|++||||+||++||+|++|||+|||||||+ +++||+|++||++++.+|+||||||++||||||+||||+|||||
T Consensus 1 ~~~~~v~~ll~~~~~~~~~~~~~kav~sL~KklK~~~~~Le~L~~Av~~~~~~s~CV~ipr~ldgrlqv~~~k~~Phvi~ 80 (124)
T 3kmp_A 1 FTSPAVKRLLGWKQGDEEEKWAEKAVDALVKKLKKKKGAMEELEKALSCPGQPSNCVTIPRSLDGRLQVSHRKGLPHVIY 80 (124)
T ss_dssp CCCHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHCTTSCCCCCEEECCSSSCEEETTEEECHHHHH
T ss_pred CCchhhhHHhhhhcCCchhhHHHHHHHHHHHHHHhccchHHHHHHHHhCCCCCCCeEEeccccccccccCCcccCceeeE
Confidence 68999999999999999999999999999999999 49999999999999999999999999999999999999999998
No 3
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus}
Probab=100.00 E-value=6.7e-39 Score=228.38 Aligned_cols=82 Identities=35% Similarity=0.457 Sum_probs=78.9
Q ss_pred CCCCCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhhc-CcHHHHHHHHhcCC-CCCcceeecccccccccccCcCCCc
Q psy13847 4 LFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKS-NGLDELEKAITTQD-PNTKCVTIPRLQFEDLQQSGVCSSP 81 (91)
Q Consensus 4 ~~~~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk~-~~le~Le~Altt~~-~~tkCVTIpRslDGRLQVs~rKglP 81 (91)
...|++|+|++|||||||+|||+|++|||+|||||||++ ++||+|++||++++ .+|+||||||++||||||+||||+|
T Consensus 4 ~~~~~~~~v~~Ll~~k~g~e~ek~~~ka~~sLvKkLK~k~~~Le~L~~Av~s~g~~~s~CV~ipr~ldgrlqv~~rk~~P 83 (132)
T 3qsv_A 4 SNDACLSIVHSLMCHRQGGESETFAKRAIESLVKKLKEKKDELDSLITAITTNGAHPSKCVTIQRTLDGRLQVAGRKGFP 83 (132)
T ss_dssp CSSCHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTTSSCCCCCEEECCTTSCEEETTEEECH
T ss_pred cccCcchhhhhhhccccCchhHHHHHHHHHHHHHHHhcccchHHHHHHHHhCCCCCCCCeEEeeccccccccccccccCc
Confidence 455899999999999999999999999999999999997 89999999999998 7999999999999999999999999
Q ss_pred eEEe
Q psy13847 82 VALS 85 (91)
Q Consensus 82 hviy 85 (91)
||||
T Consensus 84 Hvi~ 87 (132)
T 3qsv_A 84 HVIY 87 (132)
T ss_dssp HHHH
T ss_pred ceeE
Confidence 9998
No 4
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=50.24 E-value=44 Score=22.74 Aligned_cols=46 Identities=20% Similarity=0.265 Sum_probs=33.4
Q ss_pred HHHHHHhhh----ccCCCcchhHHHHHHHHHHHhhhc---CcHHHHHHHHhcC
Q psy13847 10 PIVKKLLGW----KKGDGEDKYSEKAVKSLVKKLKKS---NGLDELEKAITTQ 55 (91)
Q Consensus 10 ~~Vk~LL~w----kqg~eeek~aeKAIkSLVKKLKk~---~~le~Le~Altt~ 55 (91)
..+.|+-.| .+++..+.|.-+||+.||.|-... =..++|-.||.|+
T Consensus 62 eLi~RI~~yl~~~~~~g~~D~~rl~ai~~lI~~~~~g~plP~~~~l~~alrtG 114 (114)
T 2rnn_A 62 VLQDLIRNFLQNALVVGKSDPYRVQAVKFLIERIRKNEPLPVYKDLWNALRKG 114 (114)
T ss_dssp HHHHHHHHHHHHTTCTTCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhcC
Confidence 445566555 233468999999999999997664 3478888888764
No 5
>2ljw_A ALR2454 protein; novel fold, structural genomics, northeast structural genomi consortium, NESG, PSI-biology, protein structure initiative function; NMR {Nostoc SP}
Probab=41.60 E-value=22 Score=24.31 Aligned_cols=42 Identities=24% Similarity=0.185 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCcHHHHHHHHhcCC-C--CCcceeecccccccc
Q psy13847 31 AVKSLVKKLKKSNGLDELEKAITTQD-P--NTKCVTIPRLQFEDL 72 (91)
Q Consensus 31 AIkSLVKKLKk~~~le~Le~Altt~~-~--~tkCVTIpRslDGRL 72 (91)
=++..+.=|..+|..|.....|.+.. . -.+||+||=.|++|+
T Consensus 53 hL~~va~~L~~wG~~~~Vr~~l~~t~~rPRlGkAVsipLdlg~r~ 97 (110)
T 2ljw_A 53 HLDSVANYLHALGGAVQVKTFITQTKERPRLGKAVSIPLDLGERA 97 (110)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHCCCCCBTTBCEEEEECCHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHhCCCCCCCCeEEEEeecCCccc
Confidence 46667777888899999999887765 2 479999998888875
No 6
>1e6y_B Methyl-coenzyme M reductase I beta subunit; biological methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET: MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP: a.89.1.1 d.58.31.2
Probab=36.51 E-value=31 Score=28.38 Aligned_cols=40 Identities=20% Similarity=0.206 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhc--CcHHHHHHHHhcCCCCCc-ceeeccccc
Q psy13847 30 KAVKSLVKKLKKS--NGLDELEKAITTQDPNTK-CVTIPRLQF 69 (91)
Q Consensus 30 KAIkSLVKKLKk~--~~le~Le~Altt~~~~tk-CVTIpRslD 69 (91)
-||+.+|+..|.. =+|+-+|+++.|.....+ |.-.-|.||
T Consensus 29 ~ai~kii~~~kRtvAVnL~Gie~~Lktg~~GGk~~~I~Greld 71 (433)
T 1e6y_B 29 AAIQSIIMDTKRSVAVNLAGIQGALASGKMGGKGRQILGRGLN 71 (433)
T ss_dssp HHHHHHHHHHHHEEEEEHHHHHHHHHHCCCSSTTCCCTTCCCC
T ss_pred HHHHHHHhhhhheEEeeHHHHHHHHhccCcCCCcccccCcccC
Confidence 4899999998887 469999999999986544 544447665
No 7
>1vmc_A Stromal cell-derived factor 1; CXC-chemokine, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1
Probab=35.82 E-value=20 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.280 Sum_probs=14.3
Q ss_pred CCcchhHHHHHHHHHHH
Q psy13847 22 DGEDKYSEKAVKSLVKK 38 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKK 38 (91)
|.+++|+++.|+.|.+|
T Consensus 55 dP~~~WVq~~i~~l~~~ 71 (71)
T 1vmc_A 55 DPKLKWIQEYLEKALNK 71 (71)
T ss_dssp CTTCHHHHHHHHHHHHC
T ss_pred CCChHHHHHHHHHHHhC
Confidence 67899999999888764
No 8
>1ich_A TNF-1, tumor necrosis factor receptor-1; death domain, apoptosis; NMR {Homo sapiens} SCOP: a.77.1.2
Probab=35.46 E-value=28 Score=23.43 Aligned_cols=52 Identities=17% Similarity=0.311 Sum_probs=26.2
Q ss_pred HHHHHHhhhccCC--CcchhHHHHHHHHHHHhhhc---CcHHHHHHHHhcCCCCCcceeecc
Q psy13847 10 PIVKKLLGWKKGD--GEDKYSEKAVKSLVKKLKKS---NGLDELEKAITTQDPNTKCVTIPR 66 (91)
Q Consensus 10 ~~Vk~LL~wkqg~--eeek~aeKAIkSLVKKLKk~---~~le~Le~Altt~~~~tkCVTIpR 66 (91)
+...-|..|++.. .+- ++..|++-|.+- +..|.++..+...+....|...||
T Consensus 56 q~yqmLr~W~~~~G~~~A-----tv~~L~~aLr~~~l~~~ae~Ie~~l~~~~~~~~~~~~~~ 112 (112)
T 1ich_A 56 AQYSMLATWRRRTPRREA-----TLELLGRVLRDMDLLGCLEDIEEALCGPAALPPAPSLLR 112 (112)
T ss_dssp HHHHHHHHHHHHSCCSSC-----HHHHHHHHHHHTTCHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHhccHHHHHHHHHHHhccccCCCCCcCCC
Confidence 4455667787632 221 688888888874 457888888888887777777665
No 9
>3sqg_B Methyl-coenzyme M reductase, beta subunit; anaerobic methane oxidation, transferase; HET: MHS 0AF TP7 M43 1PE PGE P6G; 2.10A {Uncultured archaeon}
Probab=34.19 E-value=38 Score=27.87 Aligned_cols=40 Identities=23% Similarity=0.121 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhhc--CcHHHHHHHHhcCCCCC-cceeeccccc
Q psy13847 30 KAVKSLVKKLKKS--NGLDELEKAITTQDPNT-KCVTIPRLQF 69 (91)
Q Consensus 30 KAIkSLVKKLKk~--~~le~Le~Altt~~~~t-kCVTIpRslD 69 (91)
-||+.+|+..|.. =+|+-+|+++.|..... .|.-.-|.||
T Consensus 30 ~ai~kii~~~KRtvAVnLaGie~aLktg~~GGk~~~I~Greld 72 (433)
T 3sqg_B 30 AAIKKIVNLTIRTGAVDLAGLEKKFATGAIAGRGMVIRGVNRN 72 (433)
T ss_dssp HHHHHHHHHHHHCEEEEHHHHHHHHHHTCCSSTTCCCTTCCCC
T ss_pred HHHHHHHHhhhheeEeeHHHHHHHHhccCcCCCcccccCcccC
Confidence 4899999999987 46999999999997543 4544447655
No 10
>1hbn_B Methyl-coenzyme M reductase I beta subunit; methanogenesis, biological methanogenesis, NI-enzyme, oxidoreductase; HET: MHS AGM MGN F43 TP7; 1.16A {Methanothermobacterthermautotrophicus} SCOP: a.89.1.1 d.58.31.2 PDB: 1hbm_B* 1hbo_B* 1hbu_B* 1mro_B* 3m1v_B* 3m2r_B* 3m2u_B* 3m2v_B* 3m30_B* 3m32_B* 3pot_B* 1e6v_B*
Probab=33.94 E-value=36 Score=28.09 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhhc--CcHHHHHHHHhcCCCCCc-ceeeccccc
Q psy13847 30 KAVKSLVKKLKKS--NGLDELEKAITTQDPNTK-CVTIPRLQF 69 (91)
Q Consensus 30 KAIkSLVKKLKk~--~~le~Le~Altt~~~~tk-CVTIpRslD 69 (91)
-||+.+|+..|.. =+|+-+|+++.|.....+ |.-.-|.||
T Consensus 32 ~ai~kii~~~kRTvAVnL~Gie~~Lktg~~GGk~~~I~Greld 74 (442)
T 1hbn_B 32 PAIKSIVQGIKRTVAVNLEGIENALKTAKVGGPACKIMGRELD 74 (442)
T ss_dssp HHHHHHHHHHHHEEEEEHHHHHHHHHHTCCSSTTCCCTTCCCC
T ss_pred HHHHHHHhhhhheEEeeHHHHHHHHhccCcCCCcccccCcccC
Confidence 4889999998887 469999999999986544 544447665
No 11
>3gty_S TF, 30S ribosomal protein S7; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima}
Probab=29.26 E-value=1.4e+02 Score=20.64 Aligned_cols=52 Identities=21% Similarity=0.347 Sum_probs=34.4
Q ss_pred CCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhhc---CcHHHHHHHHhcCCCC
Q psy13847 7 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKS---NGLDELEKAITTQDPN 58 (91)
Q Consensus 7 ~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk~---~~le~Le~Altt~~~~ 58 (91)
|.+|+|.+|..----+..-.-|++-+..-...++++ +.++-|++||..-.+.
T Consensus 11 ~~~~lv~kliN~lM~~GKK~~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~ 65 (149)
T 3gty_S 11 FGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPV 65 (149)
T ss_dssp SCCHHHHHHHHHHCBTTBTTTHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCC
Confidence 788999988654221333344666666655555443 6799999999887755
No 12
>2pv4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.95A {Shewanella amazonensis} SCOP: a.286.1.1
Probab=28.08 E-value=25 Score=25.17 Aligned_cols=17 Identities=53% Similarity=0.642 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHhhhc
Q psy13847 26 KYSEKAVKSLVKKLKKS 42 (91)
Q Consensus 26 k~aeKAIkSLVKKLKk~ 42 (91)
+-+..++|-+||||||-
T Consensus 113 rv~~~~lKe~vKkLKKA 129 (145)
T 2pv4_A 113 RVAEAALKESVKKLKKA 129 (145)
T ss_dssp HHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45678999999999994
No 13
>3t98_A Nuclear pore complex protein NUP54; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus}
Probab=27.82 E-value=46 Score=19.72 Aligned_cols=20 Identities=15% Similarity=0.508 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhhcCcHHHHH
Q psy13847 28 SEKAVKSLVKKLKKSNGLDELE 49 (91)
Q Consensus 28 aeKAIkSLVKKLKk~~~le~Le 49 (91)
..+|+..||.-+|+ ++++|+
T Consensus 30 QQ~g~~~Li~ivk~--DleDL~ 49 (51)
T 3t98_A 30 QQEGLSHLISIIKD--DLEDIK 49 (51)
T ss_dssp HHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHhh
Confidence 45899999999998 577665
No 14
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=27.43 E-value=26 Score=24.25 Aligned_cols=42 Identities=29% Similarity=0.514 Sum_probs=30.7
Q ss_pred CcchhHHHHHHHHHHHhhh--------c--CcHHHHHHHHhcCCCCCcceeec
Q psy13847 23 GEDKYSEKAVKSLVKKLKK--------S--NGLDELEKAITTQDPNTKCVTIP 65 (91)
Q Consensus 23 eeek~aeKAIkSLVKKLKk--------~--~~le~Le~Altt~~~~tkCVTIp 65 (91)
+|.+||||||.. ||-|-- . +-||++-+-+...|-.-..||-|
T Consensus 59 ddkewaekairf-vkslgaqvliiiydqdqnrleefsrevrrrgfevrtvtsp 110 (134)
T 2l69_A 59 DDKEWAEKAIRF-VKSLGAQVLIIIYDQDQNRLEEFSREVRRRGFEVRTVTSP 110 (134)
T ss_dssp SSHHHHHHHHHH-HHHHCCCCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSH
T ss_pred ccHHHHHHHHHH-HHhcCCeEEEEEEeCchhHHHHHHHHHHhcCceEEEecCh
Confidence 678999999974 454321 2 45889989898888666677766
No 15
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=26.69 E-value=40 Score=19.99 Aligned_cols=19 Identities=26% Similarity=0.459 Sum_probs=15.4
Q ss_pred CCcchhHHHHHHHHHHHhh
Q psy13847 22 DGEDKYSEKAVKSLVKKLK 40 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKKLK 40 (91)
|.+++|+++.|+.|-++.+
T Consensus 50 dP~~~WVq~~i~~l~~~~~ 68 (70)
T 1ha6_A 50 DPKQNWVKRAVNLLSLRVK 68 (70)
T ss_dssp CTTSHHHHHHHHHHHHHTS
T ss_pred CCChHHHHHHHHHHHHhhh
Confidence 5789999999988876643
No 16
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=23.97 E-value=95 Score=18.31 Aligned_cols=28 Identities=25% Similarity=0.695 Sum_probs=13.6
Q ss_pred CCC-CCHHHHHHHhhhccCCCcchhHHHHHHHHH
Q psy13847 4 LFP-FTPPIVKKLLGWKKGDGEDKYSEKAVKSLV 36 (91)
Q Consensus 4 ~~~-~~~~~Vk~LL~wkqg~eeek~aeKAIkSLV 36 (91)
||| ++..+|+..|.=..|+ .+.||++|.
T Consensus 19 mFP~ld~~~I~~vL~a~~gd-----vd~aI~~LL 47 (59)
T 1wgl_A 19 MFPNMDQEVIRSVLEAQRGN-----KDAAINSLL 47 (59)
T ss_dssp HCSSSCHHHHHHHHTTTTTC-----HHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHcCCC-----HHHHHHHHH
Confidence 444 4555555555444433 344555554
No 17
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.92 E-value=87 Score=23.38 Aligned_cols=39 Identities=28% Similarity=0.383 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhhhc---------C-------cHHHHHHHHhcC-CCCCcceeecc
Q psy13847 28 SEKAVKSLVKKLKKS---------N-------GLDELEKAITTQ-DPNTKCVTIPR 66 (91)
Q Consensus 28 aeKAIkSLVKKLKk~---------~-------~le~Le~Altt~-~~~tkCVTIpR 66 (91)
.++.+..|+|++||. | -|+.|..++... +..|.+|+||-
T Consensus 121 ~~~~l~~lak~lkk~gI~v~vIgFG~~~~n~~kLe~l~~~~Ng~~~~~s~~v~v~~ 176 (268)
T 4b4t_W 121 SRDELIRLAKTLKKNNVAVDIINFGEIEQNTELLDEFIAAVNNPQEETSHLLTVTP 176 (268)
T ss_dssp CHHHHHHHHHHHHHHTEEEEEEEESSCCSSCCHHHHHHHHHCSSTTTSCEEEEECC
T ss_pred CHHHHHHHHHHHHHcCCEEEEEEeCCCccchHHHHHHHHHhcCCCCCceeEEEeCC
Confidence 567788888888873 2 156666677654 46889999974
No 18
>1hus_A Ribosomal protein S7; RNA-binding protein, decoding center,; 2.50A {Geobacillus stearothermophilus} SCOP: a.75.1.1
Probab=23.50 E-value=1.3e+02 Score=20.91 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=34.9
Q ss_pred CCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhh---cCcHHHHHHHHhcCCCC
Q psy13847 7 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKK---SNGLDELEKAITTQDPN 58 (91)
Q Consensus 7 ~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk---~~~le~Le~Altt~~~~ 58 (91)
|..|+|.+|..----+..-.-|++-+..-+..+++ .+.++-|++||.+-.+.
T Consensus 17 y~~~lV~kliN~lM~~GKKs~A~~Iv~~a~~~I~~kt~~nPl~vl~~Ai~Nv~P~ 71 (155)
T 1hus_A 17 YNSKLVTRLINKIMIDGKKSKAQKILYTAFDIIRERTGKDPMEVFEQALKNVMPV 71 (155)
T ss_dssp TCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCc
Confidence 77899999888633233334466655555555544 26799999999887754
No 19
>1rss_A Ribosomal protein S7; RNA-binding, translation; 1.90A {Thermus thermophilus} SCOP: a.75.1.1 PDB: 1n32_G* 1i95_G* 1i96_G* 1i97_G* 1i94_G 1j5e_G* 1n33_G* 1n34_G 1n36_G 1pns_G 1pnx_G 1voq_G 1vos_G 1vov_G 1vox_G 1voz_G 2e5l_G 2zm6_G 3fic_G* 3mr8_G ...
Probab=22.54 E-value=1.4e+02 Score=20.65 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=34.7
Q ss_pred CCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhh---cCcHHHHHHHHhcCCCC
Q psy13847 7 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKK---SNGLDELEKAITTQDPN 58 (91)
Q Consensus 7 ~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk---~~~le~Le~Altt~~~~ 58 (91)
|..|+|.+|..----+..-.-|++-+..-...+++ .+.++-|++||.+-.+.
T Consensus 13 ~~~~lv~kliN~lM~~GKKs~A~~Iv~~a~~~i~~kt~~nPl~vl~~Ai~Nv~P~ 67 (151)
T 1rss_A 13 YGDVLVTAFINKIMRDGKKNLAARIFYDACKIIQEKTGQEPLKVFKQAVENVKPR 67 (151)
T ss_dssp TCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCc
Confidence 77899999888632233334456555555555443 26799999999887754
No 20
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=22.09 E-value=99 Score=20.89 Aligned_cols=31 Identities=19% Similarity=0.326 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHhhhc-C------cHHHHHHHHhcCC
Q psy13847 26 KYSEKAVKSLVKKLKKS-N------GLDELEKAITTQD 56 (91)
Q Consensus 26 k~aeKAIkSLVKKLKk~-~------~le~Le~Altt~~ 56 (91)
.-++-|+++|.|||+.. + +|.-||..+.+-|
T Consensus 49 ~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG 86 (157)
T 1elk_A 49 EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCG 86 (157)
T ss_dssp SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence 35788999999999842 2 2455555555544
No 21
>2c5i_P Vacuolar protein sorting protein 51; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.3A {Saccharomyces cerevisiae}
Probab=21.66 E-value=26 Score=18.89 Aligned_cols=9 Identities=33% Similarity=-0.134 Sum_probs=4.4
Q ss_pred cccCcCCCc
Q psy13847 73 QQSGVCSSP 81 (91)
Q Consensus 73 QVs~rKglP 81 (91)
|++|+|+++
T Consensus 3 qItHKK~lr 11 (29)
T 2c5i_P 3 QISHKKSLR 11 (29)
T ss_dssp ----CCCCC
T ss_pred cccccCCcc
Confidence 789999987
No 22
>3i1m_G 30S ribosomal protein S7; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_G* 3e1a_U 3e1c_U 1vs5_G 3i1o_G 3i1q_G 3i1s_G 3i1z_G 3i21_G 3izv_K* 3izw_K* 3kc4_G 3or9_G 3ora_G 3uoq_G* 4gaq_G* 4gas_G* 2qal_G* 1p6g_G 1p87_G ...
Probab=21.55 E-value=2.3e+02 Score=20.30 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=33.7
Q ss_pred CCHHHHHHHhhhccCCCcchhHHHHHHHHHHHhhh---cCcHHHHHHHHhcCCCC
Q psy13847 7 FTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKK---SNGLDELEKAITTQDPN 58 (91)
Q Consensus 7 ~~~~~Vk~LL~wkqg~eeek~aeKAIkSLVKKLKk---~~~le~Le~Altt~~~~ 58 (91)
|..|+|.+|..----+..-.-|++-+..-...+++ .+.++-|++||.+-.+.
T Consensus 18 y~~~lV~kliN~lM~~GKKs~A~~Iv~~A~~~I~~kt~~nPl~vl~~AI~Nv~P~ 72 (179)
T 3i1m_G 18 FGSELLAKFVNILMVDGKKSTAESIVYSALETLAQRSGKSELEAFEVALENVRPT 72 (179)
T ss_dssp TCCHHHHHHHHHHCCTTCHHHHHHHHHHHHHHHHHHHCSCSHHHHHHHHHHHCCS
T ss_pred cCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCCC
Confidence 77889998865422233334455555555544444 37899999999887755
No 23
>1tvx_A NAP-2, neutrophil activating peptide 2 variant; cytokine; 1.75A {Homo sapiens} SCOP: d.9.1.1 PDB: 1nap_A
Probab=21.52 E-value=56 Score=19.77 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=13.9
Q ss_pred CCcchhHHHHHHHHHHH
Q psy13847 22 DGEDKYSEKAVKSLVKK 38 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKK 38 (91)
+.+++|+++.|+.|.+|
T Consensus 54 dP~~~WVq~~i~~l~~~ 70 (75)
T 1tvx_A 54 DPDAPRIKKIVQKKLAG 70 (75)
T ss_dssp CTTCHHHHHHHHHHHHT
T ss_pred CCChHHHHHHHHHHHhc
Confidence 57899999988877665
No 24
>3gv3_A CXCL12 protein; SDF, chemokine, disulfide bond, cytokine; 1.60A {Homo sapiens} SCOP: d.9.1.1 PDB: 2nwg_A* 2kee_A 2kec_A 2ked_A 3hp3_A 2j7z_A 1qg7_A 1sdf_A 2sdf_A 1a15_A 2kol_A 2k01_A 2k03_A* 2k04_A 2k05_A*
Probab=21.51 E-value=36 Score=19.87 Aligned_cols=15 Identities=13% Similarity=0.229 Sum_probs=12.5
Q ss_pred CCcchhHHHHHHHHH
Q psy13847 22 DGEDKYSEKAVKSLV 36 (91)
Q Consensus 22 ~eeek~aeKAIkSLV 36 (91)
|.+++|++++|+.++
T Consensus 48 dP~~~WVq~~ik~~l 62 (63)
T 3gv3_A 48 DPKLKWIQEYLEKAL 62 (63)
T ss_dssp CTTCTTHHHHHHHHC
T ss_pred CCChHHHHHHHHHHh
Confidence 678999999988764
No 25
>1m8a_A Small inducible cytokine A20; CC-chemokine, IL-8 type dimer; 1.70A {Synthetic} SCOP: d.9.1.1 PDB: 2jyo_A 2hci_A
Probab=21.15 E-value=32 Score=20.43 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=13.1
Q ss_pred CCcchhHHHHHHHHHHHh
Q psy13847 22 DGEDKYSEKAVKSLVKKL 39 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKKL 39 (91)
|.+++|+++.|+.|-++.
T Consensus 50 dP~~~WVq~~i~~l~~~~ 67 (70)
T 1m8a_A 50 NPKQTWVKYIVRLLSKKV 67 (70)
T ss_dssp CTTSHHHHHHHHHHTC--
T ss_pred CCChHHHHHHHHHHHHhh
Confidence 678999999988776543
No 26
>1mgs_A Human melanoma growth stimulatory activity; chemokine(growth factor); NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 1msg_A 1msh_A 1qnk_A
Probab=20.54 E-value=68 Score=19.13 Aligned_cols=17 Identities=6% Similarity=0.243 Sum_probs=14.1
Q ss_pred CCcchhHHHHHHHHHHH
Q psy13847 22 DGEDKYSEKAVKSLVKK 38 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKK 38 (91)
|.+++|+++.|+.|-++
T Consensus 53 dP~~~wVk~~i~~l~~~ 69 (73)
T 1mgs_A 53 NPASPIVKKIIEKMLNS 69 (73)
T ss_dssp CTTSHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhh
Confidence 67899999999887665
No 27
>1icw_A Interleukin-8, IL-8; cytokine, chemokine; 2.01A {Homo sapiens} SCOP: d.9.1.1 PDB: 1ikl_A* 1ikm_A* 1il8_A 1ilp_A* 1ilq_A* 2il8_A 3il8_A 1qe6_A 1rod_A
Probab=20.26 E-value=70 Score=19.08 Aligned_cols=17 Identities=18% Similarity=0.585 Sum_probs=14.2
Q ss_pred CCcchhHHHHHHHHHHH
Q psy13847 22 DGEDKYSEKAVKSLVKK 38 (91)
Q Consensus 22 ~eeek~aeKAIkSLVKK 38 (91)
|.+++|+++.|+.|-++
T Consensus 52 dP~~~WVq~~ik~l~~~ 68 (72)
T 1icw_A 52 DPKENWVQRVVEKFLKR 68 (72)
T ss_dssp CTTSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhh
Confidence 57899999999887765
Done!