RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13847
         (91 letters)



>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 126

 Score = 96.8 bits (241), Expect = 2e-28
 Identities = 52/78 (66%), Positives = 59/78 (75%), Gaps = 3/78 (3%)

Query: 7  FTPPIVKKLLGWKKGDG---EDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVT 63
          FTPPIVK+LLGWKKG+    E+K+ EKAVKSLVKKLKK+  LDELEKAITTQ+ NTKC+T
Sbjct: 1  FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCIT 60

Query: 64 IPRLQFEDLQQSGVCSSP 81
          IPR     LQ S     P
Sbjct: 61 IPRSLDGRLQVSHRKGLP 78


>d1tc5a_ c.110.1.1 (A:) probable eukaryotic D-amino acid tRNA
          deacylase {Leishmania major [TaxId: 5664]}
          Length = 187

 Score = 25.0 bits (54), Expect = 1.3
 Identities = 3/25 (12%), Positives = 10/25 (40%)

Query: 15 LLGWKKGDGEDKYSEKAVKSLVKKL 39
           + +         +++A++  V  L
Sbjct: 34 YIAFLSDRDSAPITDEALRHAVGVL 58


>d1k32a4 c.14.1.2 (A:680-762,A:854-1061) Tricorn protease {Archaeon
           Thermoplasma acidophilum [TaxId: 2303]}
          Length = 291

 Score = 24.7 bits (53), Expect = 1.7
 Identities = 6/33 (18%), Positives = 16/33 (48%)

Query: 8   TPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLK 40
            P +  +        G+D   + A+ +L+++L+
Sbjct: 258 DPDVEIEYAPHDYLSGKDPQIDYAIDALIEELR 290


>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
          Length = 175

 Score = 23.9 bits (51), Expect = 2.9
 Identities = 8/30 (26%), Positives = 17/30 (56%)

Query: 22  DGEDKYSEKAVKSLVKKLKKSNGLDELEKA 51
           D + + + + V+  VK++ +   LDE+  A
Sbjct: 146 DRQPELTAERVEKWVKQISEELHLDEILNA 175


>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica
           charantia) [TaxId: 3673]}
          Length = 190

 Score = 23.5 bits (50), Expect = 4.5
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 50  KAITTQDPNTKCVTIPRLQFEDLQQSGVCSSPVALS 85
           KA   + P  +C T P+ +   L Q   C +    +
Sbjct: 140 KAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGST 175


>d2pv4a1 a.286.1.1 (A:1-144) Uncharacterized protein Sama2622
           {Shewanella amazonensis [TaxId: 60478]}
          Length = 144

 Score = 23.3 bits (50), Expect = 5.1
 Identities = 9/18 (50%), Positives = 13/18 (72%)

Query: 25  DKYSEKAVKSLVKKLKKS 42
            + +E A+K  VKKLKK+
Sbjct: 111 VRVAEAALKESVKKLKKA 128


>d1k9xa_ d.92.1.5 (A:) Thermostable carboxypeptidase 1 {Archaeon
          Pyrococcus furiosus [TaxId: 2261]}
          Length = 497

 Score = 23.4 bits (50), Expect = 5.6
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 16 LGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAI 52
           G       +        +LV+K K    L+E E+ I
Sbjct: 48 QGELSVLSHELLLHPEFVNLVEKAKGLENLNEYERGI 84


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal
          fragment {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 23.2 bits (49), Expect = 6.6
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 1  MTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKA 51
          M  L  F    +  +   K  + E K   K + ++  K K    LD   K 
Sbjct: 2  MRGLAVF----ISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSKK 48


>d1c4za_ d.148.1.1 (A:) Ubiquitin-protein ligase E3a (E6ap) {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 350

 Score = 23.2 bits (49), Expect = 6.7
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 5   FPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAIT 53
             F   + +KL+G K    +   S   +   +K L +  G  E +  IT
Sbjct: 112 VHFPMVVYRKLMGKKGTFRDLGDSHPVLYQSLKDLLEYEGNVEDDMMIT 160


>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein
          L2 {Thermus thermophilus [TaxId: 274]}
          Length = 125

 Score = 22.9 bits (49), Expect = 6.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 22 DGEDKYSEKAVKSLVKKLKKSNG 44
          D  +    +  KSLVK LKK+ G
Sbjct: 19 DFSEITKTEPEKSLVKPLKKTGG 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.389 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,191
Number of extensions: 13056
Number of successful extensions: 34
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 15
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.2 bits)