BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13848
(409 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|242015075|ref|XP_002428200.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
gi|212512752|gb|EEB15462.1| DNA-directed RNA polymerase III largest subunit, putative
[Pediculus humanus corporis]
Length = 1364
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 156/372 (41%), Positives = 211/372 (56%), Gaps = 51/372 (13%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQLHCAL+INSET+GIPL+MQPK +RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 306 MINEDWDFLQLHCALYINSETTGIPLSMQPKKATRGLVQRLKGKQGRFRGNLSGKRVDFS 365
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
SRTVISPDPNLQI QVG+PEHVAKILT+PE+V+ AN L++LV NGPD HPG ++R
Sbjct: 366 SRTVISPDPNLQIDQVGVPEHVAKILTFPEKVNRANIFLLRELVRNGPDTHPGANFVEDR 425
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHA--GKACLQELHP 178
G SK Y+R ++ ++ LK V+ H L P
Sbjct: 426 ---NGNSK--RYLRYGNRSKISSE-------------LKFGDVVERHLIDDDIVLFNRQP 467
Query: 179 SNGPL-VMALSGS--KGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP-- 233
S L +MA K ++ + +G + N LP + +
Sbjct: 468 SLHKLSIMAHRAKVLKHRTFRFNECVCTPYNADFDGDEM-----NLHLPQTLEAKAEALV 522
Query: 234 --ASKGNVKFLRYGNRLKIASE--LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWL 289
++K N+ R G L A++ + AYL+ ++ T +++ WL
Sbjct: 523 LMSNKANLATPRNGELLIAATQDFITGAYLL--------------TQKNTFFTQAKANWL 568
Query: 290 SSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L+ L ++ + +PPPAI+KP LWT KQIFS+ILKPN+ C + NL+TKG+AY
Sbjct: 569 ---LACILAGKDANLHIDLPPPAIIKPMRLWTAKQIFSVILKPNKKCKIVCNLRTKGKAY 625
Query: 350 TFKFSIMVKDQF 361
T + + V D F
Sbjct: 626 TSREEMCVNDSF 637
Score = 209 bits (533), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 97/128 (75%), Positives = 115/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLLRAKE+LL+ GYSKC YI+AME+G+L QPGC+ +ETLEAVILKELSVIRDHAGKAC
Sbjct: 708 GLLRAKEKLLNAGYSKCVEYIKAMEAGKLPCQPGCTIDETLEAVILKELSVIRDHAGKAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
LQELH SN PL+MAL GSKGSFINISQMIACVGQQAI+GKRVP+ F+NR+LP F++++K
Sbjct: 768 LQELHSSNSPLIMALCGSKGSFINISQMIACVGQQAISGKRVPDKFENRALPQFERYTKI 827
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 828 PAAKGFVE 835
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/32 (65%), Positives = 24/32 (75%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+Q+RE N A ISHV F VDSP IQQQ+
Sbjct: 1 MVKEQYRETNIAKMISHVCFGVDSPEVIQQQA 32
>gi|345489196|ref|XP_001602571.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Nasonia vitripennis]
Length = 1355
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 146/363 (40%), Positives = 197/363 (54%), Gaps = 39/363 (10%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
EDWE+LQLH AL+INSE SGIP +MQP+ RGL+QRLKGKQGRFRGNLSGKRVDF+SRT
Sbjct: 280 EDWEFLQLHVALYINSEMSGIPPSMQPQKAGRGLVQRLKGKQGRFRGNLSGKRVDFSSRT 339
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
VISPDPNL+I QVG+P HVAKILTYPERV+ N E +++LV NGPD HPG +
Sbjct: 340 VISPDPNLRIEQVGVPIHVAKILTYPERVNKCNIELMRRLVKNGPDVHPG-----ANFIE 394
Query: 124 EGYSKCEGYIRAMESGRL--QTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
G +K ++R ++ Q G E L H G L PS
Sbjct: 395 IGKNKERRFLRYGNRQKMAQDLQYGDIVERHL-------------HDGDVVLFNRQPSLH 441
Query: 182 PLVMALSGSK---GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
L + +K ++ + +G + N LP ++ +
Sbjct: 442 KLSIMAHKAKVLENRTFRFNECVCTPYNADFDGDEM-----NLHLPQTEEARAEA----- 491
Query: 239 VKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLR 298
+ GN+ + + L+ I+ G L ++ T +S+ +S ++S L
Sbjct: 492 --LVLMGNKSNLVTPRNGELLIAATQDFITG-GYLLTQKDTFLNKSQ---VSQLISCLLA 545
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVK 358
+ + +P PAI+KP +WTGKQIFS+IL+PN CPV ANLKTKGRAYT + +
Sbjct: 546 GEDTTMQITLPKPAILKPAIMWTGKQIFSVILRPNEKCPVKANLKTKGRAYTSNEELCIN 605
Query: 359 DQF 361
D +
Sbjct: 606 DSY 608
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 101/134 (75%), Positives = 116/134 (86%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LLRAK+ LL+ GY KC YIR ME+G+L QPGCS EE+LEA+ILKELSVIRD
Sbjct: 673 DVTPGHSLLRAKQELLNNGYGKCTEYIRKMEAGKLPCQPGCSEEESLEAMILKELSVIRD 732
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
HAGK CL+ELHPSN PLVMALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF
Sbjct: 733 HAGKVCLKELHPSNSPLVMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHF 792
Query: 227 DKFSKDPASKGNVK 240
+K+SK PA+KG V+
Sbjct: 793 EKYSKVPAAKGFVE 806
>gi|241633681|ref|XP_002408700.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
gi|215501234|gb|EEC10728.1| DNA-directed RNA polymerase II largest subunit, putative [Ixodes
scapularis]
Length = 1394
Score = 231 bits (589), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 198/366 (54%), Gaps = 39/366 (10%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL++NSETSGIPLNMQPK +RG +QRLKGK GRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+P HVAKILTYPERV N ++ LV NGPD HPG + R
Sbjct: 365 GRTVISPDPNLRIDQVGVPVHVAKILTYPERVTQHNLALMRTLVRNGPDVHPGANFLESR 424
Query: 121 LLSEGYSKCEGYIRAMESGRL--QTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
G+ + Y+R L Q +PG E L RD G L P
Sbjct: 425 --DSGFKR---YLRYGNRDLLAQQLRPGDVVERHL-----------RD--GDVVLFNRQP 466
Query: 179 SNGPLVMALSGSK---GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
S L + +K ++ + +G + N LP ++ +
Sbjct: 467 SLHKLSIMAHLAKVLPHRTFRFNECVCTPYNADFDGDEM-----NLHLPQTEEARAEA-- 519
Query: 236 KGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSS 295
+ G R + + L+ + I+ G L ++ R++ L++ +
Sbjct: 520 -----LVLMGTRANLVTPRNGEPLIAAIQDFITG-GYLLTQRDVFFDRAKAAQLAAYM-- 571
Query: 296 SLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
L ++ SV +PPPAI KP LWTGKQIFSLI++P+R CPV A+L+ KG++YT +
Sbjct: 572 -LAGKDVSISVELPPPAIRKPVCLWTGKQIFSLIIRPSRSCPVLASLRAKGKSYTSGEEM 630
Query: 356 MVKDQF 361
D +
Sbjct: 631 CANDAY 636
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 88/128 (68%), Positives = 111/128 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK L+SEGY++CE YI+ ++ G+LQ QPGC+ EETLEAV LKELSV+RDHAGKAC
Sbjct: 707 GLLKAKHDLVSEGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVSLKELSVVRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL+MA+ GSKGSFINISQMIACVGQQAI+G RVPNGF++RSLPHF++ +
Sbjct: 767 LRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFERNDRT 826
Query: 233 PASKGNVK 240
P ++G V+
Sbjct: 827 PQARGFVE 834
>gi|350402598|ref|XP_003486538.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus impatiens]
Length = 1385
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 101/128 (78%), Positives = 115/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AKE+LL+ GYSKC YIR ME GRL QPGCS EETLEA+ILKELSVIRDHAGKAC
Sbjct: 707 GLLKAKEKLLNAGYSKCTEYIRQMEEGRLVCQPGCSEEETLEAMILKELSVIRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHPSN PL+MALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF++ SK
Sbjct: 767 LKELHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKI 826
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 827 PAAKGFVE 834
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/113 (78%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SRTVISPDPNL+I QVG+P HVAKILTYPERV+ +N E +++LV NGPD HPG
Sbjct: 365 SRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPG 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
S+ +P PAI+KP LWTGKQIFSLILKPN C + ANLKTKGRAYT + + D +
Sbjct: 580 SITLPEPAILKPSMLWTGKQIFSLILKPNSTCNIKANLKTKGRAYTSNQELCINDSY 636
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISHV+F VDS +++Q+
Sbjct: 1 MVKEQFRETDVARKISHVSFGVDSRHNMERQA 32
>gi|91092426|ref|XP_968165.1| PREDICTED: similar to AGAP004703-PA [Tribolium castaneum]
gi|270004743|gb|EFA01191.1| hypothetical protein TcasGA2_TC010518 [Tribolium castaneum]
Length = 1390
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 112/128 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLLR K +LL +GY+KC+ YIR M GRLQ QPGC+AEETLEAVILKELSVIR+HAG+AC
Sbjct: 718 GLLRRKNKLLEDGYTKCDEYIRQMADGRLQCQPGCTAEETLEAVILKELSVIREHAGQAC 777
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L ELHP+N PL+MALSGSKGSFINISQMIACVGQQA+NGKRVP+GF+NRSLPHF SK
Sbjct: 778 LAELHPTNSPLIMALSGSKGSFINISQMIACVGQQALNGKRVPDGFENRSLPHFPHHSKT 837
Query: 233 PASKGNVK 240
P +KG V+
Sbjct: 838 PEAKGFVE 845
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M QE W++LQL AL+INSE SGIPL M PK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 315 MYQEGWDFLQLQTALYINSELSGIPLAMMPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SRTVISPDPNLQI QVG+P H+AKILT+PERV HAN + ++QLV+NGPDK PG
Sbjct: 375 SRTVISPDPNLQIDQVGVPLHIAKILTFPERVIHANIDVMRQLVINGPDKWPG 427
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 53/74 (71%), Gaps = 3/74 (4%)
Query: 290 SSVLSSSLRFREHETSVII--PPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+S L+++L E++T++ I P P I+KP+ LW+GKQI SLI +PN+ CPV ANL+ KG+
Sbjct: 574 ASQLAATL-LAENDTNMQIDLPTPCILKPRRLWSGKQICSLIFRPNKKCPVKANLEAKGK 632
Query: 348 AYTFKFSIMVKDQF 361
AYT + VKD +
Sbjct: 633 AYTKNRELCVKDSY 646
>gi|340711859|ref|XP_003394485.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Bombus terrestris]
Length = 1385
Score = 211 bits (538), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/128 (78%), Positives = 114/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AKE+LL+ GYSKC YI ME GRL QPGCS EETLEA+ILKELSVIRDHAGKAC
Sbjct: 707 GLLKAKEKLLNAGYSKCTEYICQMEEGRLVCQPGCSEEETLEAMILKELSVIRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHPSN PL+MALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF++ SK
Sbjct: 767 LKELHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKI 826
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 827 PAAKGFVE 834
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 89/113 (78%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SRTVISPDPNL+I QVG+P HVAKILTYPERV+ +N E +++LV NGPD HPG
Sbjct: 365 SRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDIHPG 417
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
S+ +P PAI+KP LWTGKQIFSLILKPN C + ANLKTKGRAYT + + D +
Sbjct: 580 SISLPEPAILKPSMLWTGKQIFSLILKPNSTCNIKANLKTKGRAYTSNQELCINDSY 636
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISHV+F VDS +++Q+
Sbjct: 1 MVKEQFRETDVARKISHVSFGVDSRHNMERQA 32
>gi|328710964|ref|XP_001945328.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Acyrthosiphon pisum]
Length = 1366
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 138/370 (37%), Positives = 199/370 (53%), Gaps = 47/370 (12%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++ EDWE+LQLHCAL+INS+ SG+ M PK +RG +QRLKGK GRFRGNLSGKRVDFT
Sbjct: 309 LLHEDWEYLQLHCALYINSDLSGVSRTMMPKKIARGCVQRLKGKHGRFRGNLSGKRVDFT 368
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
+R+VISPDPNL+I +VG+P +AKILTYP++V AN E +++LV+NGP+ HPG
Sbjct: 369 ARSVISPDPNLRIEEVGVPVRMAKILTYPQKVCPANIELMRKLVMNGPEIHPG-----AN 423
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+ SK + Y+ R +P + + + ++ + LS G L PS
Sbjct: 424 FVELQGSKLKKYL------RFGNRPAIAKDLKIGDIVERHLS-----DGDIVLFNRQPSL 472
Query: 181 GPLVMALSGSKGSFINISQMIACVG---QQAINGKRVPNGFDNRSLPHFDKFSKDPA--- 234
L + +K N + CV +G + N LP ++ + A
Sbjct: 473 HRLSIMCHRAKVLEHNTLRFNECVCTPYNADFDGDEM-----NLHLPQTEEARAEAALLM 527
Query: 235 -SKGNVKFLRYGNRLKIASE--LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSS 291
+K N+ R G+ L A++ + AYL+ ++ R D R GWL S
Sbjct: 528 INKSNLVTPRNGDILIAATQDFITGAYLLTHKNTFLNQR---------DSSRLI-GWLMS 577
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+ + +P PAI+KP LWTGKQI S+I++P++ C V ANL+ KG++YT
Sbjct: 578 -------GDDINIDLTLPRPAILKPHKLWTGKQILSIIMRPSKKCLVKANLRCKGKSYTR 630
Query: 352 KFSIMVKDQF 361
KD +
Sbjct: 631 DEEFCFKDSY 640
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 100/127 (78%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL++K L+ G + CE IR S L+ QPGC+ +ETLEA ILK+LS IRD GKACL
Sbjct: 712 LLQSKNELVINGNALCEENIRLRNSKELKCQPGCNMDETLEANILKQLSGIRDSVGKACL 771
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELH +NGPLVMALSGSKGS INISQMIACVGQQA++G RVP+GF++RSLPHF +FSK P
Sbjct: 772 LELHFTNGPLVMALSGSKGSNINISQMIACVGQQALSGHRVPDGFESRSLPHFKRFSKTP 831
Query: 234 ASKGNVK 240
+KG V+
Sbjct: 832 EAKGFVE 838
>gi|405974578|gb|EKC39212.1| DNA-directed RNA polymerase III subunit RPC1 [Crassostrea gigas]
Length = 1368
Score = 211 bits (537), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 95/128 (74%), Positives = 115/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GL++AK LL +GY+KC+ +IR +E G+LQTQPGCS EETLEA+IL+ELSVIRDHAGKAC
Sbjct: 705 GLIKAKNNLLEDGYTKCDSFIRDLEEGKLQTQPGCSEEETLEAMILRELSVIRDHAGKAC 764
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH SN PL MA+ GSKGSFINISQMIACVGQQAI+GKR PNGF++R+LPHF+KFSKD
Sbjct: 765 LRELHKSNSPLNMAICGSKGSFINISQMIACVGQQAISGKRTPNGFEDRALPHFEKFSKD 824
Query: 233 PASKGNVK 240
PA++G V+
Sbjct: 825 PAARGFVE 832
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 95/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL AL NSETSGIPL+MQPK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 303 MIMEDWDYLQLQVALLYNSETSGIPLHMQPKKMTRGFVQRLKGKQGRFRGNLSGKRVDFS 362
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN++I QV +P HVAK+LTYPERV+ AN + +++LV NG D HPG
Sbjct: 363 GRTVISPDPNMRIDQVAVPVHVAKVLTYPERVNKANIKLMRKLVKNGCDTHPG 415
Score = 75.9 bits (185), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 49/70 (70%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L RE + +PPPAI+KP LWTGKQIFS++L+PN++ PV ANL TKG+ Y+
Sbjct: 565 LIASMLSGRERTLKIDLPPPAIIKPIKLWTGKQIFSVLLRPNKNSPVRANLWTKGKNYSG 624
Query: 352 KFSIMVKDQF 361
+ + D F
Sbjct: 625 GEDLCINDSF 634
>gi|6624245|dbj|BAA88487.1| RNA polymerase III largest subunit [Lethenteron reissneri]
Length = 538
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 100/127 (78%), Positives = 112/127 (88%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLLRAK++LLSEGYSKC +I + SGRLQ QPGCSAE+TLEAVILKELSVIRDHAG AC
Sbjct: 203 GLLRAKQQLLSEGYSKCRDFIAQLHSGRLQQQPGCSAEQTLEAVILKELSVIRDHAGTAC 262
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL MAL GSKGSFINISQMIACVGQQAI+G R+PNGF++RSLPHFDK SK
Sbjct: 263 LRELHKTNSPLTMALCGSKGSFINISQMIACVGQQAISGSRIPNGFEDRSLPHFDKHSKI 322
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 323 PAAKGFV 329
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 274 HPKQKTDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPN 333
H D+ R+ S + +S L + + +P PA++KP +LWTGKQ+FSLIL+PN
Sbjct: 49 HKDTFFDRARA-----SQIAASMLAGCDSAVRITLPRPAVVKPVSLWTGKQVFSLILRPN 103
Query: 334 RDCPVNANLKTKGRAYT 350
PV NL+T+G+ YT
Sbjct: 104 PRDPVRLNLRTRGKQYT 120
>gi|380025198|ref|XP_003696364.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like, partial [Apis florea]
Length = 1994
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 114/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL+ GYSKC YI+ ME GRL QPGC+ EETLEA+ILKELSVIRDHAGKAC
Sbjct: 1335 GLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKELSVIRDHAGKAC 1394
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHPSN PL+MALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF++ SK
Sbjct: 1395 LKELHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKI 1454
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 1455 PAAKGFVE 1462
Score = 193 bits (490), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 91/134 (67%), Positives = 109/134 (81%), Gaps = 5/134 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 933 MYSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 992
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
SRTVISPDPNL+I QVG+P HVAKILTYPE+V+ +N E +++LV NGPD HPG
Sbjct: 993 SRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPG-----AN 1047
Query: 121 LLSEGYSKCEGYIR 134
+ +G ++ + Y+R
Sbjct: 1048 FIQQGKTQFKKYLR 1061
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 41/57 (71%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
S+ +P PAI+KP LWTGKQ FSLILKPN C + ANLKTKGRAYT + + D +
Sbjct: 1208 SINLPEPAILKPTTLWTGKQXFSLILKPNNTCNIKANLKTKGRAYTTNEELCINDSY 1264
Score = 41.2 bits (95), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 343 KTKG-RAYTFKFSIMVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
K+KG Y F+ MVK+QFRE + A KISHV+F VDS +++Q+
Sbjct: 616 KSKGIYFYNITFT-MVKEQFRETDVARKISHVSFGVDSRHNMERQA 660
>gi|328790760|ref|XP_003251457.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Apis mellifera]
Length = 1374
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 114/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL+ GYSKC YI+ ME GRL QPGC+ EETLEA+ILKELSVIRDHAGKAC
Sbjct: 707 GLLKAKQELLNAGYSKCTEYIQDMEEGRLICQPGCTEEETLEAMILKELSVIRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHPSN PL+MALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF++ SK
Sbjct: 767 LKELHPSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKI 826
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 827 PAAKGFVE 834
Score = 194 bits (493), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 91/134 (67%), Positives = 109/134 (81%), Gaps = 5/134 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MYSEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
SRTVISPDPNL+I QVG+P HVAKILTYPE+V+ +N E +++LV NGPD HPG
Sbjct: 365 SRTVISPDPNLRIEQVGVPIHVAKILTYPEKVNPSNIELMRKLVRNGPDIHPG-----AN 419
Query: 121 LLSEGYSKCEGYIR 134
+ +G ++ + Y+R
Sbjct: 420 FIQQGKTQFKKYLR 433
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 42/57 (73%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
S+ +P PAI+KP LWTGKQIFSLILKPN C + ANLKTKGRAYT + + D +
Sbjct: 580 SINLPEPAILKPTTLWTGKQIFSLILKPNNTCNIKANLKTKGRAYTTNEELCINDSY 636
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISHV+F VDS +++Q+
Sbjct: 1 MVKEQFRETDVARKISHVSFGVDSRHNMERQA 32
>gi|383861274|ref|XP_003706111.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Megachile rotundata]
Length = 2015
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 99/128 (77%), Positives = 112/128 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL GYSKC YI ME GRL QPGC+ EETLEA+ILKELSVIRDHAGKAC
Sbjct: 1341 GLLKAKQELLHAGYSKCTEYIHQMEEGRLVCQPGCTEEETLEAMILKELSVIRDHAGKAC 1400
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHPSN PLVMALSGSKGSFINISQMIACVGQQAI+G RVPNGF++R+LPHF++ SK
Sbjct: 1401 LKELHPSNSPLVMALSGSKGSFINISQMIACVGQQAISGHRVPNGFEDRALPHFERHSKI 1460
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 1461 PAAKGFVE 1468
Score = 195 bits (495), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 109/134 (81%), Gaps = 5/134 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 939 MYNEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 998
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
SRTVISPDPNL+I QVG+P HVAKILTYPERV+ +N E +++LV NGPD HPG
Sbjct: 999 SRTVISPDPNLRIEQVGVPIHVAKILTYPERVNPSNIELMRKLVRNGPDVHPG-----AN 1053
Query: 121 LLSEGYSKCEGYIR 134
+ +G ++ + Y+R
Sbjct: 1054 FIQQGKTQFKKYLR 1067
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/57 (61%), Positives = 43/57 (75%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
S+ +P PAI+KP LWTGKQIFSLILKPN+ C + ANLKTKGRAYT + + D +
Sbjct: 1214 SIDLPEPAILKPTVLWTGKQIFSLILKPNKMCNIRANLKTKGRAYTTNEELCINDSY 1270
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISHV+F VDS +++Q+
Sbjct: 632 MVKEQFRETDVARKISHVSFGVDSRHNMERQA 663
>gi|156370189|ref|XP_001628354.1| predicted protein [Nematostella vectensis]
gi|156215328|gb|EDO36291.1| predicted protein [Nematostella vectensis]
Length = 1398
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/128 (78%), Positives = 112/128 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AKE LLS GYSKCE YI G+LQTQPGCSAE+TLEAVILKELSVIRDHAGKAC
Sbjct: 707 GLLQAKEDLLSTGYSKCEDYINEFREGKLQTQPGCSAEDTLEAVILKELSVIRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH SN PL MA+ GSKGSFINISQMIACVGQQAI+GKR+P+GF++RSLPHF + SK
Sbjct: 767 LRELHKSNTPLTMAVCGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHFKRHSKL 826
Query: 233 PASKGNVK 240
PA+KG VK
Sbjct: 827 PAAKGFVK 834
Score = 188 bits (478), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 85/113 (75%), Positives = 98/113 (86%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNMQPK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSEMSGIPLNMQPKKGTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P HVAK+LTYPERV +N + +KQLVLNG D+HPG
Sbjct: 365 GRTVISPDPNLRIDQVAVPIHVAKVLTYPERVTQSNLKLMKQLVLNGADQHPG 417
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 45/73 (61%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
++ + +S L ++ + +PPPAI KP LWTGKQ+FS++L+PN V NL+ +G+
Sbjct: 564 IAQLCASILAGKDTGVDIELPPPAIHKPCRLWTGKQVFSVLLRPNPKVKVRMNLRARGKQ 623
Query: 349 YTFKFSIMVKDQF 361
YT + V D F
Sbjct: 624 YTSGEDLCVNDSF 636
>gi|6624243|dbj|BAA88486.1| RNA polymerase III largest subunit [Eptatretus burgeri]
Length = 537
Score = 204 bits (520), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 98/128 (76%), Positives = 112/128 (87%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
PGLL AK LLS GY KC+ YI A+++G+LQ QPGCSAEETLEAVILKELSVIRDHAGKA
Sbjct: 201 PGLLCAKHELLSAGYKKCDEYISALKAGKLQQQPGCSAEETLEAVILKELSVIRDHAGKA 260
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
CL+ELH SN P+VMAL GSKGSFINISQMIACVGQQAI+G R+P+GF++RSLPHF + SK
Sbjct: 261 CLRELHKSNSPMVMALCGSKGSFINISQMIACVGQQAISGSRIPDGFEDRSLPHFPRSSK 320
Query: 232 DPASKGNV 239
PA+KG V
Sbjct: 321 LPAAKGFV 328
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 39/54 (72%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+PPPAI+ P LWTGKQIFSL+L+P++ CP+ NL+TKG+ Y+ + D F
Sbjct: 78 LPPPAILCPVCLWTGKQIFSLLLRPSQSCPIMPNLRTKGKQYSGGEDLCPNDSF 131
>gi|390334195|ref|XP_781681.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Strongylocentrotus purpuratus]
Length = 681
Score = 204 bits (518), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 94/128 (73%), Positives = 115/128 (89%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+A+++LL EGYSKC+ YI+ +E G+LQTQ GC+AEETLE++ILKELSVIRDHAGKAC
Sbjct: 36 GLLQAQKQLLHEGYSKCDEYIQQLEVGKLQTQAGCTAEETLESMILKELSVIRDHAGKAC 95
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH SN PL MA+ GSKGSFINISQMIACVGQQAI+GKR+PNGF++R+LPHF + S+
Sbjct: 96 LRELHKSNSPLNMAVCGSKGSFINISQMIACVGQQAISGKRIPNGFEDRALPHFKRHSRI 155
Query: 233 PASKGNVK 240
PA+KG VK
Sbjct: 156 PAAKGFVK 163
>gi|451770412|ref|NP_001263425.1| DNA-directed RNA polymerase III subunit RPC1 [Danio rerio]
Length = 1390
Score = 203 bits (516), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL GY KC+ YI A+++GRLQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPE+V+ AN E +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPG 417
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + + +P PAI+KP LWTGKQIFSLILKP++ CPV ANL+TKG+ Y
Sbjct: 567 IVASILVGKDEKIKISLPHPAILKPIRLWTGKQIFSLILKPSKSCPVMANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|444720682|gb|ELW61459.1| DNA-directed RNA polymerase III subunit RPC1 [Tupaia chinensis]
Length = 1368
Score = 202 bits (513), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 692 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 751
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHFDK SK
Sbjct: 752 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFDKHSKL 811
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 812 PAAKGFV 818
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 82/113 (72%), Gaps = 16/113 (14%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I + V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRI----------------DEVNKANINFLRKLVRNGPEVHPG 401
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 551 IIASILVGKDEKIKVCLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 610
Query: 352 K 352
K
Sbjct: 611 K 611
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|156717272|ref|NP_001096178.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
(Silurana) tropicalis]
gi|134025743|gb|AAI35597.1| polr3a protein [Xenopus (Silurana) tropicalis]
Length = 1390
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL GY KC+ YI A+ +G+LQ QPGCSAEETLEA+IL+ELSVIRDHAG AC
Sbjct: 707 GLLKAKQDLLDAGYKKCDEYIEALNTGKLQPQPGCSAEETLEALILRELSVIRDHAGSAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 767 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 826
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 827 PAAKGFV 833
Score = 181 bits (459), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIP+NM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 MIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN + +++LV NGPD HPG
Sbjct: 364 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPDVHPG 416
Score = 74.3 bits (181), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 46/61 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FSLIL+P+ D PV ANL+TKG+ Y
Sbjct: 566 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSHDNPVRANLRTKGKQYCG 625
Query: 352 K 352
K
Sbjct: 626 K 626
>gi|126272809|ref|XP_001364762.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Monodelphis domestica]
Length = 1390
Score = 201 bits (512), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFMRKLVRNGPEVHPG 417
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQ+FSLIL+P+ + PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSLILQPSDENPVRANLRTKGKQY 624
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|149015767|gb|EDL75115.1| similar to polymerase (RNA) III (DNA directed) (155kD) [Rattus
norvegicus]
Length = 745
Score = 201 bits (512), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 63 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 122
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 123 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 182
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 183 PAAKGFV 189
>gi|224052370|ref|XP_002195476.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Taeniopygia guttata]
Length = 1390
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPG 417
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 47/61 (77%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FSLILKP+ DCPV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILKPSDDCPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|348576170|ref|XP_003473860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Cavia
porcellus]
Length = 1390
Score = 201 bits (511), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 96/127 (75%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +GRLQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGRLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +P PAI+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKVKVRLPHPAILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|449504974|ref|XP_004174828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 2
[Taeniopygia guttata]
Length = 1369
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 687 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 746
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 747 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 806
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 807 PAAKGFV 813
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 284 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 343
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 344 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVCNGPDVHPG 396
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 47/61 (77%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FSLILKP+ DCPV ANL+TKG+ Y
Sbjct: 546 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILKPSDDCPVKANLRTKGKQYCG 605
Query: 352 K 352
K
Sbjct: 606 K 606
>gi|449269147|gb|EMC79953.1| DNA-directed RNA polymerase III subunit RPC1, partial [Columba
livia]
Length = 1375
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 693 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 752
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 753 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 812
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 813 PAAKGFV 819
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 290 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 349
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 350 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 402
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 47/61 (77%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FSLILKP+ DCPV ANL+TKG+ Y
Sbjct: 552 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILKPSDDCPVKANLRTKGKQYCG 611
Query: 352 K 352
K
Sbjct: 612 K 612
>gi|432115682|gb|ELK36917.1| DNA-directed RNA polymerase III subunit RPC1 [Myotis davidii]
Length = 951
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 269 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 328
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 329 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 388
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 389 PAAKGFV 395
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 128 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 187
Query: 352 K 352
K
Sbjct: 188 K 188
>gi|348508629|ref|XP_003441856.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oreochromis niloticus]
Length = 1390
Score = 201 bits (511), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 111/127 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL +GY KC+ YI A+++G+LQ QPGC+AEETLEA+ILKELSVIRD AG AC
Sbjct: 708 GLLKAKQDLLDDGYKKCDEYIEALDTGKLQQQPGCTAEETLEALILKELSVIRDRAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPERV+ AN E +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPDVHPG 417
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + +P PAI+KP ALWTGKQIFSLILKP+++CPVNANL+TKG+ Y
Sbjct: 567 IVASILVGKDERVRISLPRPAIIKPMALWTGKQIFSLILKPSKECPVNANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|432923404|ref|XP_004080458.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Oryzias latipes]
Length = 1390
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 94/127 (74%), Positives = 111/127 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL +GY KC+ YI A+++G+LQ QPGCSAEETLEA+IL+ELSVIRD AG AC
Sbjct: 708 GLLKAKQDLLDDGYKKCDEYIEALQTGKLQQQPGCSAEETLEALILRELSVIRDRAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 182 bits (463), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPE V+ AN E +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPEMVNKANLELMRKLVRNGPDVHPG 417
Score = 78.2 bits (191), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 48/61 (78%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + + +P PAI+KP ALWTGKQIFS+IL+P++DCPV ANL+TKG+ Y
Sbjct: 567 IVASILVGKDEKVRISLPHPAILKPMALWTGKQIFSMILRPSKDCPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|327276885|ref|XP_003223197.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Anolis carolinensis]
Length = 1337
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+++G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALKTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN + +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIDLMRKLVRNGPEAHPG 417
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 46/61 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+F +ILKP++ CPV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVHLPPPAILKPVTLWTGKQVFGVILKPSKSCPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|395501590|ref|XP_003755175.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Sarcophilus harrisii]
Length = 1390
Score = 201 bits (510), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLTAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGNAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFMRKLVRNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 45/58 (77%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPPAI+KP LWTGKQ+FSLIL+P+ + PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSLILQPSDENPVRANLRTKGKQY 624
Score = 41.6 bits (96), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|426255838|ref|XP_004021555.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Ovis
aries]
Length = 1390
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKHELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQY 624
>gi|57529842|ref|NP_001006500.1| DNA-directed RNA polymerase III subunit RPC1 [Gallus gallus]
gi|75571385|sp|Q5ZL98.1|RPC1_CHICK RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|53130332|emb|CAG31495.1| hypothetical protein RCJMB04_7b9 [Gallus gallus]
Length = 1390
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FS ILKP+ DCPV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRESDVAKKISHICFGMKSPEEMRQQA 32
>gi|410044035|ref|XP_507865.4| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
troglodytes]
Length = 1380
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 698 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 757
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 758 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 817
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 818 PAAKGFV 824
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 295 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 354
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 355 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 407
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 557 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 616
Query: 352 K 352
K
Sbjct: 617 K 617
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|124486963|ref|NP_001074716.1| DNA-directed RNA polymerase III subunit RPC1 [Mus musculus]
gi|187956633|gb|AAI51169.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|187956659|gb|AAI51170.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
gi|223462631|gb|AAI51003.1| Polymerase (RNA) III (DNA directed) polypeptide A [Mus musculus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|297301053|ref|XP_002805710.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Macaca mulatta]
Length = 1405
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 723 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 782
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 783 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 842
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 843 PAAKGFV 849
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|417406396|gb|JAA49858.1| Putative rna polymerase i large subunit [Desmodus rotundus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDSPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|109503668|ref|XP_001056048.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
gi|392353748|ref|XP_341389.5| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Rattus
norvegicus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|441657982|ref|XP_003274523.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Nomascus
leucogenys]
Length = 1275
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 563 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 622
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 623 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 682
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 683 PAAKGFV 689
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 422 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSNDNPVRANLRTKGKQYCG 481
Query: 352 K 352
K
Sbjct: 482 K 482
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|410975432|ref|XP_003994136.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Felis
catus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|301765986|ref|XP_002918413.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Ailuropoda melanoleuca]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|221043166|dbj|BAH13260.1| unnamed protein product [Homo sapiens]
Length = 1369
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|139948582|ref|NP_001077219.1| DNA-directed RNA polymerase III subunit RPC1 [Bos taurus]
gi|187611407|sp|A4IF62.1|RPC1_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|134024541|gb|AAI34423.1| POLR3A protein [Bos taurus]
gi|296472154|tpg|DAA14269.1| TPA: polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Bos
taurus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQY 624
>gi|148669493|gb|EDL01440.1| mCG7865 [Mus musculus]
Length = 1349
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 667 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 726
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 727 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 786
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 787 PAAKGFV 793
Score = 181 bits (459), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|73953679|ref|XP_536399.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Canis
lupus familiaris]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|345309868|ref|XP_001514706.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1
[Ornithorhynchus anatinus]
Length = 1489
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 807 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 866
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PLVMA+ GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 867 LRELDKSNSPLVMAVCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 926
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 927 PAAKGFV 933
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 404 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 463
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGP+ HPG
Sbjct: 464 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFMRKLVRNGPEVHPG 516
Score = 69.7 bits (169), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 43/58 (74%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQ+FSLIL+P+ PV ANL+TKG+ Y
Sbjct: 666 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSLILRPSDASPVRANLRTKGKQY 723
>gi|431904080|gb|ELK09502.1| DNA-directed RNA polymerase III subunit RPC1 [Pteropus alecto]
Length = 1375
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|351708991|gb|EHB11910.1| DNA-directed RNA polymerase III subunit RPC1 [Heterocephalus
glaber]
Length = 1392
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 710 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 769
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 770 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 829
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 830 PAAKGFV 836
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +P PAI+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 569 IIASILVGKDEKVRVRLPHPAILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 628
Query: 352 K 352
K
Sbjct: 629 K 629
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|281340311|gb|EFB15895.1| hypothetical protein PANDA_006866 [Ailuropoda melanoleuca]
Length = 1375
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 693 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 752
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 753 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 812
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 813 PAAKGFV 819
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 290 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 349
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 350 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 402
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 552 IIASILVGKDEKIKVHLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 611
Query: 352 K 352
K
Sbjct: 612 K 612
>gi|426365245|ref|XP_004049691.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Gorilla
gorilla gorilla]
Length = 1334
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 652 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 711
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 712 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 771
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 772 PAAKGFV 778
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 296 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 355
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 356 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 408
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/151 (35%), Positives = 78/151 (51%), Gaps = 38/151 (25%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR--VAGSI---SARGELHPKQ------KTDKVRSRNG- 287
+FL+YGNR K+A ELK +V R + G + + + LH K + V RNG
Sbjct: 421 RFLKYGNREKMAQELKYGDIVERHLIDGDVVLFNRQPSLHKLSIMAHLTKANLVTPRNGE 480
Query: 288 --------WLSS------------------VLSSSLRFREHETSVIIPPPAIMKPKALWT 321
+L+ +++S L ++ + V +PPP I+KP LWT
Sbjct: 481 PLIAAIQDFLTGAYLLTLKDTFFDRAKACQIIASILVGKDEKIKVRLPPPTILKPVTLWT 540
Query: 322 GKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
GKQIFS+IL+P+ D PV ANL+TKG+ Y K
Sbjct: 541 GKQIFSVILRPSNDNPVRANLRTKGKQYCGK 571
>gi|403297971|ref|XP_003939815.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Saimiri
boliviensis boliviensis]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|402880352|ref|XP_003903768.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Papio
anubis]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|296220277|ref|XP_002756253.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 isoform 1
[Callithrix jacchus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|410216326|gb|JAA05382.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410254866|gb|JAA15400.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410296284|gb|JAA26742.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
gi|410329457|gb|JAA33675.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Pan
troglodytes]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|355562468|gb|EHH19062.1| hypothetical protein EGK_19701 [Macaca mulatta]
gi|355782811|gb|EHH64732.1| hypothetical protein EGM_18035 [Macaca fascicularis]
gi|380809180|gb|AFE76465.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415455|gb|AFH30941.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415457|gb|AFH30942.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415459|gb|AFH30943.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415461|gb|AFH30944.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
gi|383415463|gb|AFH30945.1| DNA-directed RNA polymerase III subunit RPC1 [Macaca mulatta]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANISFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|149690349|ref|XP_001504046.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Equus
caballus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 44/58 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQIFS++L+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVVLRPSDDSPVRANLRTKGKQY 624
Score = 41.6 bits (96), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|39725938|ref|NP_008986.2| DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]
gi|206729892|sp|O14802.2|RPC1_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=DNA-directed RNA polymerase III subunit A;
AltName: Full=RNA polymerase III 155 kDa subunit;
Short=RPC155; AltName: Full=RNA polymerase III subunit
C160
gi|26996801|gb|AAH41089.1| Polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|119575002|gb|EAW54617.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Homo
sapiens]
gi|168277638|dbj|BAG10797.1| DNA-directed RNA polymerase III subunit RPC1 [synthetic construct]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|291404119|ref|XP_002718445.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide A,
155kDa [Oryctolagus cuniculus]
Length = 1390
Score = 200 bits (508), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDSPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|194042171|ref|XP_001929395.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like [Sus
scrofa]
Length = 1390
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPG 417
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQ+FS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQVFSVILRPSYDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|344274310|ref|XP_003408960.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Loxodonta africana]
Length = 1392
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLTAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANIHFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|2460208|gb|AAB86536.1| RNA polymerase III largest subunit [Homo sapiens]
Length = 1391
Score = 199 bits (507), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A K SH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKTSHICFGMKSPEEMRQQA 32
>gi|260820176|ref|XP_002605411.1| hypothetical protein BRAFLDRAFT_120654 [Branchiostoma floridae]
gi|229290744|gb|EEN61421.1| hypothetical protein BRAFLDRAFT_120654 [Branchiostoma floridae]
Length = 975
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 110/128 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL AK+ LL GY C+ +IR +E G+LQ+QPGC+ E+TLEAVILKELSVIRDHAGKAC
Sbjct: 440 GLLTAKKNLLDTGYGNCDSFIRELEEGKLQSQPGCTPEQTLEAVILKELSVIRDHAGKAC 499
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L ELH SN PL MA+ GSKGSFINISQMIACVGQQAI+G+RVPNGF++R+LPHF ++SK+
Sbjct: 500 LTELHKSNSPLTMAVCGSKGSFINISQMIACVGQQAISGQRVPNGFEDRALPHFKRYSKE 559
Query: 233 PASKGNVK 240
P +KG V+
Sbjct: 560 PEAKGFVE 567
>gi|395820429|ref|XP_003783569.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Otolemur
garnettii]
Length = 1390
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 108/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLTAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|47216067|emb|CAG04806.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1319
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL +GY+KC+ YI A+++G+LQ QPGC+AEETLEA+IL+ELSVIRD AG AC
Sbjct: 652 GLLKAKHDLLDDGYTKCDEYIEALQTGKLQQQPGCTAEETLEALILRELSVIRDRAGSAC 711
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 712 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 771
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 772 PAAKGFV 778
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 249 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 308
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPERV+ AN E +++LV NGP+ HPG
Sbjct: 309 GRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPG 361
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 48/61 (78%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + + P PAIMKP ALWTGKQIFS+ILKP++DCPVNANLKTKG+ Y
Sbjct: 511 IVASILVGKDEKVRISFPRPAIMKPMALWTGKQIFSVILKPSKDCPVNANLKTKGKQYCG 570
Query: 352 K 352
K
Sbjct: 571 K 571
>gi|317419477|emb|CBN81514.1| DNA-directed RNA polymerase III subunit RPC1 [Dicentrarchus labrax]
Length = 1390
Score = 199 bits (505), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 93/127 (73%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL +GY KC+ YI A+++G+LQ QPGC+AEETLEA+IL+ELSVIRD AG AC
Sbjct: 708 GLLKAKHDLLDDGYKKCDEYIEALKTGKLQQQPGCTAEETLEALILRELSVIRDRAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPERV+ AN E +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPG 417
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 48/61 (78%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +P PAIMKP ALWTGKQIFS+ILKP+++CPV ANL+TKG+ Y
Sbjct: 567 IVASILVGKDEKIRVTLPRPAIMKPMALWTGKQIFSVILKPSKECPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|410895601|ref|XP_003961288.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Takifugu rubripes]
Length = 1390
Score = 197 bits (502), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 96/133 (72%), Positives = 112/133 (84%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+AK LL +GY KC+ YI A+++G+LQ QPGCSAEETLEA+IL+ELSVIRD
Sbjct: 702 DVTPGQSLLKAKHDLLDDGYMKCDEYIDALQTGKLQQQPGCSAEETLEALILRELSVIRD 761
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG ACL+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF
Sbjct: 762 RAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHF 821
Query: 227 DKFSKDPASKGNV 239
+K SK PA+KG V
Sbjct: 822 EKHSKLPAAKGFV 834
Score = 183 bits (464), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 83/113 (73%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPERV+ AN E +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPERVNKANLELMRKLVRNGPEVHPG 417
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/61 (57%), Positives = 49/61 (80%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + + +P PAIMKP ALWTGKQIFS+ILKP+++CPVNANL+TKG+ Y
Sbjct: 567 IVASILVGKDEKVRISLPRPAIMKPMALWTGKQIFSVILKPSKECPVNANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|316997015|dbj|BAJ52635.1| RNA polymerase III largest subunit [Ephydatia fluviatilis]
Length = 899
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 94/134 (70%), Positives = 114/134 (85%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ AKERL++EGY+KCE +I + + G+LQTQPGC+AEETLEA IL ELSVIR+
Sbjct: 196 DVTPGKKLIAAKERLVTEGYAKCEDFISSFKEGKLQTQPGCTAEETLEAKILHELSVIRE 255
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGKAC ELH +NGPL+MALSGSKGSFINISQMIACVGQQAI+GKR+P+GF++RSLPHF
Sbjct: 256 SAGKACKSELHHTNGPLIMALSGSKGSFINISQMIACVGQQAISGKRIPDGFEDRSLPHF 315
Query: 227 DKFSKDPASKGNVK 240
+ SK P +KG V+
Sbjct: 316 PRKSKSPGAKGFVE 329
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%)
Query: 287 GWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKG 346
V++S L ++ + IPPPAI KP LWTGKQ+ SL+++PN++ V NL+ KG
Sbjct: 57 ALFCQVVASMLHGKDTLLKIDIPPPAIWKPAKLWTGKQVISLLIRPNQNSSVIMNLRAKG 116
Query: 347 RAYT 350
+ YT
Sbjct: 117 KQYT 120
>gi|354482229|ref|XP_003503302.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Cricetulus griseus]
Length = 1280
Score = 197 bits (501), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 93/124 (75%), Positives = 107/124 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASK 236
PA+K
Sbjct: 828 PAAK 831
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSIILRPSDDSPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|443729218|gb|ELU15202.1| hypothetical protein CAPTEDRAFT_219447 [Capitella teleta]
Length = 1381
Score = 197 bits (500), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 90/127 (70%), Positives = 111/127 (87%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL GYSKC YI+ ++ RL++QPGCS EETLE++ILKELSVIRDHAG AC
Sbjct: 701 GLLQAKQSLLDAGYSKCIEYIQELKENRLKSQPGCSPEETLESMILKELSVIRDHAGNAC 760
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL MA+ GSKGSFINISQMIACVGQQAI+GKRVPNGF++R+LPHF++ +KD
Sbjct: 761 LRELHKTNSPLTMAVCGSKGSFINISQMIACVGQQAISGKRVPNGFEDRALPHFERHAKD 820
Query: 233 PASKGNV 239
PA++G V
Sbjct: 821 PAARGFV 827
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 92/113 (81%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL AL NSETSGIPL+M PK RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 299 MIMEDWDYLQLQVALLFNSETSGIPLHMMPKKPMRGFTQRLKGKQGRFRGNLSGKRVDFS 358
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN++I QV +P HVAKILTYPERV++AN +K+LV NG D HPG
Sbjct: 359 GRTVISPDPNMRIDQVAVPVHVAKILTYPERVNYANLSLMKKLVTNGCDSHPG 411
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 50/79 (63%), Gaps = 3/79 (3%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
R++ L+S + S + + T V +PPP I KP +W+GKQIFSLIL+P++ V NL
Sbjct: 555 RAKACQLASAILSQM---DRSTKVELPPPCIFKPLKMWSGKQIFSLILRPHQSSNVKINL 611
Query: 343 KTKGRAYTFKFSIMVKDQF 361
+TKG+ YT + +KD F
Sbjct: 612 RTKGKNYTKDEDLCIKDSF 630
>gi|427798211|gb|JAA64557.1| Putative rna polymerase i large subunit, partial [Rhipicephalus
pulchellus]
Length = 1429
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 111/128 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GL++AK+ L+S GY++CE YI+ ++ G+LQ QPGC+ EETLEAV LKELSV+RDHAGKAC
Sbjct: 707 GLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL+MA+ GSKGSFINISQMIACVGQQAI+G RVPNGF++RSLPHF+K +
Sbjct: 767 LRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFEKHDRS 826
Query: 233 PASKGNVK 240
P ++G V+
Sbjct: 827 PQARGFVE 834
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL++NSETSGIPLNMQPK +RG +QRLKGK GRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +VG+PEHVAKILTYPERV N E ++QL+ NG D HPG
Sbjct: 365 GRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPG 417
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 294 SSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
S L ++ V +PPPAI+KP LWTGKQIFSLI++P+R PV A L+ KG++YT
Sbjct: 569 SCMLAGKDTNMKVELPPPAILKPVCLWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGE 628
Query: 354 SIMVKDQF 361
+ V D +
Sbjct: 629 EMCVNDAY 636
>gi|427788425|gb|JAA59664.1| Putative rna polymerase i large subunit [Rhipicephalus pulchellus]
Length = 1390
Score = 195 bits (496), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/128 (67%), Positives = 111/128 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GL++AK+ L+S GY++CE YI+ ++ G+LQ QPGC+ EETLEAV LKELSV+RDHAGKAC
Sbjct: 707 GLIKAKQDLVSAGYARCEEYIQQLKCGKLQAQPGCNEEETLEAVCLKELSVVRDHAGKAC 766
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL+MA+ GSKGSFINISQMIACVGQQAI+G RVPNGF++RSLPHF+K +
Sbjct: 767 LRELHKTNSPLIMAVCGSKGSFINISQMIACVGQQAISGHRVPNGFEDRSLPHFEKHDRS 826
Query: 233 PASKGNVK 240
P ++G V+
Sbjct: 827 PQARGFVE 834
Score = 187 bits (476), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/113 (74%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL++NSETSGIPLNMQPK +RG +QRLKGK GRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYVNSETSGIPLNMQPKKPTRGFVQRLKGKHGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +VG+PEHVAKILTYPERV N E ++QL+ NG D HPG
Sbjct: 365 GRTVISPDPNLRIDEVGVPEHVAKILTYPERVTQHNIELMRQLIRNGCDVHPG 417
Score = 71.2 bits (173), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 45/68 (66%)
Query: 294 SSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
S L ++ V +PPPAI+KP LWTGKQIFSLI++P+R PV A L+ KG++YT
Sbjct: 569 SCMLAGKDTNMKVELPPPAILKPVCLWTGKQIFSLIMRPSRSSPVMACLRAKGKSYTSGE 628
Query: 354 SIMVKDQF 361
+ V D +
Sbjct: 629 EMCVNDAY 636
>gi|357609436|gb|EHJ66444.1| hypothetical protein KGM_02886 [Danaus plexippus]
Length = 1072
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/134 (68%), Positives = 109/134 (81%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ AK +LL GYSKC+GYI ME G LQ QPGCS EETLEA++L ELS IR+
Sbjct: 389 DVTPGNKLIEAKNKLLESGYSKCDGYILEMEKGTLQCQPGCSMEETLEAIMLSELSSIRE 448
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
A KAC +ELHP+N PL+MA SGSKGS INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 449 LAAKACFRELHPTNAPLIMAQSGSKGSNINISQMIACVGQQALNGKRVPNGFEDRSLPHF 508
Query: 227 DKFSKDPASKGNVK 240
++ SK PA++G V+
Sbjct: 509 ERHSKIPAARGFVE 522
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 80/98 (81%)
Query: 26 LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKI 85
L QPK RGL+QRLKGKQGRFRGNLSGKRVDF+SRTVISPDPNLQI +VG+P HVAKI
Sbjct: 18 LLFQPKKPGRGLVQRLKGKQGRFRGNLSGKRVDFSSRTVISPDPNLQIQEVGVPVHVAKI 77
Query: 86 LTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
LTYPERV AN + L+QLV NGPD HPG ++R +S
Sbjct: 78 LTYPERVFPANLQWLRQLVRNGPDVHPGANYVQQRGVS 115
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 44/56 (78%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
V +PPPAI+KP+ LWTGKQIFSLI+KPN+ C V ANL+TKG+ YT + V+D +
Sbjct: 269 VDMPPPAILKPRMLWTGKQIFSLIMKPNKRCEVKANLETKGKNYTGNQDMCVQDSY 324
>gi|307196534|gb|EFN78064.1| DNA-directed RNA polymerase III subunit RPC1 [Harpegnathos
saltator]
Length = 1334
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 92/145 (63%), Positives = 112/145 (77%), Gaps = 4/145 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M EDWE+LQLHCAL+INSE SGIPLNMQPK RGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 280 MYHEDWEFLQLHCALYINSEMSGIPLNMQPKKSGRGLVQRLKGKQGRFRGNLSGKRVDFS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG----LLR 116
+RTVISPDPNL+I QVG+P ++AKILTYPERV+ AN + ++QL+ NG D HPG L +
Sbjct: 340 ARTVISPDPNLKIEQVGVPLYIAKILTYPERVNPANMDLMRQLIRNGADVHPGANFVLHQ 399
Query: 117 AKERLLSEGYSKCEGYIRAMESGRL 141
+R + YS IR ++ G +
Sbjct: 400 KTQRRMYLPYSNRNKVIRELQYGDI 424
Score = 186 bits (471), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/144 (61%), Positives = 106/144 (73%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AKE LL GY KC YIR ME G L QPGC+ EET+E ILKELS IRDH GK C
Sbjct: 682 GLLQAKEELLKNGYDKCTNYIRQMEEGNLVCQPGCTKEETMEVKILKELSAIRDHGGKVC 741
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL P N PL+MA+SGSKGSFINISQMI CVGQQA++GKRVP+GF+ RSLPH+ + K
Sbjct: 742 LKELAPGNSPLIMAISGSKGSFINISQMITCVGQQAVSGKRVPDGFNIRSLPHYARGLKT 801
Query: 233 PASKGNVKFLRYGNRLKIASELKS 256
P++KG V+ Y ++ L+
Sbjct: 802 PSAKGFVENSFYSGMRRLVKSLED 825
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
SV +PPPAI+KP WTGKQIF LI++PN +CPV ANL+TKG+AYT + ++D +
Sbjct: 554 VSVTLPPPAIIKPIKAWTGKQIFGLIMRPNEECPVKANLRTKGKAYTNGEEMCIEDSY 611
>gi|344251250|gb|EGW07354.1| DNA-directed RNA polymerase III subunit RPC1 [Cricetulus griseus]
Length = 1076
Score = 191 bits (486), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 90/119 (75%), Positives = 103/119 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 687 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 746
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 747 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSK 805
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 284 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 343
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 344 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 396
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 546 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSIILRPSDDSPVRANLRTKGKQYCG 605
Query: 352 K 352
K
Sbjct: 606 K 606
>gi|157130170|ref|XP_001655623.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108871980|gb|EAT36205.1| AAEL011692-PA [Aedes aegypti]
Length = 1298
Score = 191 bits (485), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 116/147 (78%), Gaps = 2/147 (1%)
Query: 96 NKEHLKQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETL 153
NK+ + L+ D P LL+ K++LL GYS+C+ YI M+ G LQ QPGC+AE+TL
Sbjct: 610 NKDCIVNANLSTKDVTPSRKLLQEKQKLLENGYSRCDEYIAEMKKGTLQCQPGCTAEQTL 669
Query: 154 EAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKR 213
EAV+LKELS IR+ A KAC +ELHP+N L+MA SGSKGS INISQMIACVGQQAINGKR
Sbjct: 670 EAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKR 729
Query: 214 VPNGFDNRSLPHFDKFSKDPASKGNVK 240
VPNGF++R+LPHF+KFSK PA++G V+
Sbjct: 730 VPNGFEDRALPHFEKFSKIPAARGFVQ 756
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+IQEDW++LQLHCAL+ NSE SGIPL++ PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 307 LIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFS 366
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL I+QVG+P+ VAKILT+PERV+ AN ++QL+ NG +KHPG
Sbjct: 367 ARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPG 419
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+P PAI+KP+ +WTGKQIFSLILKPN+DC VNANL TK
Sbjct: 585 LPKPAIIKPRKMWTGKQIFSLILKPNKDCIVNANLSTK 622
>gi|157126795|ref|XP_001660950.1| DNA-directed RNA polymerase II largest subunit [Aedes aegypti]
gi|108873160|gb|EAT37385.1| AAEL010617-PA [Aedes aegypti]
Length = 1298
Score = 191 bits (484), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 93/147 (63%), Positives = 116/147 (78%), Gaps = 2/147 (1%)
Query: 96 NKEHLKQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETL 153
NK+ + L+ D P LL+ K++LL GYS+C+ YI M+ G LQ QPGC+AE+TL
Sbjct: 610 NKDCIVNANLSTKDVTPSRKLLQEKQKLLENGYSRCDEYIAEMKKGTLQCQPGCTAEQTL 669
Query: 154 EAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKR 213
EAV+LKELS IR+ A KAC +ELHP+N L+MA SGSKGS INISQMIACVGQQAINGKR
Sbjct: 670 EAVMLKELSSIRELAAKACFRELHPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKR 729
Query: 214 VPNGFDNRSLPHFDKFSKDPASKGNVK 240
VPNGF++R+LPHF+KFSK PA++G V+
Sbjct: 730 VPNGFEDRALPHFEKFSKIPAARGFVQ 756
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+IQEDW++LQLHCAL+ NSE SGIPL++ PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 307 LIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFS 366
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL I+QVG+P+ VAKILT+PERV+ AN ++QL+ NG +KHPG
Sbjct: 367 ARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINKMRQLIKNGTEKHPG 419
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 34/38 (89%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+P PAI+KP+ +WTGKQIFSLILKPN+DC VNANL TK
Sbjct: 585 LPKPAIIKPRKMWTGKQIFSLILKPNKDCIVNANLSTK 622
>gi|170039594|ref|XP_001847615.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167863133|gb|EDS26516.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 1303
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 107/127 (84%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K++LL GYS+C+ YI M+ G LQ QPGC+AE+TLEAV+LKELS IR+ A KAC
Sbjct: 635 LLEEKQKLLENGYSRCDEYIAEMKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKACF 694
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELHP+N L+MA SGSKGS INISQMIACVGQQAINGKRVPNGF++R+LPHF+KFSK P
Sbjct: 695 RELHPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIP 754
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 755 AARGFVQ 761
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+IQEDW++LQLHCAL+ NSE SGIPL++ PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 307 LIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFS 366
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL I+QVG+P+ VAKILT+PERV+ AN ++QL+ NG +KHPG
Sbjct: 367 ARTVISPDPNLMIHQVGVPDRVAKILTFPERVNTANINRMRQLIKNGTEKHPG 419
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 36/43 (83%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+P PAI+KP+ LWTGKQIFSLILKPNR VNANL TKGR YT
Sbjct: 585 LPKPAIIKPRKLWTGKQIFSLILKPNRHSVVNANLSTKGRNYT 627
>gi|158298044|ref|XP_318130.4| AGAP004703-PA [Anopheles gambiae str. PEST]
gi|157014619|gb|EAA13195.5| AGAP004703-PA [Anopheles gambiae str. PEST]
Length = 1379
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 88/127 (69%), Positives = 106/127 (83%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K++LL GY KC+ YI M+ G LQ QPGC+AE+TLEAV+LKELS IR+ A KAC
Sbjct: 711 LLEEKQKLLENGYRKCDEYIAEMKKGTLQCQPGCTAEQTLEAVMLKELSSIRELAAKACF 770
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELHP+N L+MA SGSKGS INISQMIACVGQQAINGKRVPNGF++R+LPHF+KFSK P
Sbjct: 771 RELHPTNSALIMAQSGSKGSNINISQMIACVGQQAINGKRVPNGFEDRALPHFEKFSKIP 830
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 831 AARGFVQ 837
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 100/113 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+IQEDW++LQLHCAL+ NSE SGIPL++ PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 308 LIQEDWDYLQLHCALYFNSELSGIPLSLMPKKPTRGIVQRLKGKQGRFRGNLSGKRVDFS 367
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL I+QVG+P+ VAKILT+PE+V+ AN ++QL+ NG +KHPG
Sbjct: 368 ARTVISPDPNLMIHQVGVPDRVAKILTFPEKVNSANITRMRQLIRNGTEKHPG 420
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 39/52 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKD 359
+P PAI+KP+ LWTGKQIFSLILKPN VNANL TKGR YT + VKD
Sbjct: 586 LPRPAILKPRKLWTGKQIFSLILKPNSQSCVNANLYTKGRNYTRDNDMCVKD 637
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
M K+QFRE + KISHV+F +DSP +IQQ++
Sbjct: 1 MPKEQFREADVIKKISHVSFNIDSPQQIQQEA 32
>gi|332024635|gb|EGI64832.1| DNA-directed RNA polymerase III subunit RPC1 [Acromyrmex echinatior]
Length = 1988
Score = 187 bits (475), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/128 (71%), Positives = 101/128 (78%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLLRAKER+L+ YS C YI+ ME G L QPGCS EETLE IL ELSVIRD GKAC
Sbjct: 1317 GLLRAKERILNTHYSTCNEYIQLMEQGHLVCQPGCSEEETLETRILNELSVIRDDVGKAC 1376
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELHP+N PL MAL GSKGSFINISQMIACVGQQAING RVP+GF+NR+LPH SK
Sbjct: 1377 LKELHPTNTPLTMALCGSKGSFINISQMIACVGQQAINGCRVPDGFENRALPHVLTRSKK 1436
Query: 233 PASKGNVK 240
P +KG V+
Sbjct: 1437 PDAKGFVE 1444
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 83/110 (75%), Positives = 95/110 (86%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQLHC L+INSE SGIPL+MQPK RG++QRLKGKQGRFRGNLSGKRVDFTSRT
Sbjct: 919 EQWDFLQLHCGLYINSEMSGIPLHMQPKKSGRGIVQRLKGKQGRFRGNLSGKRVDFTSRT 978
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVAK LTYPERV +N E +++LV NGPD HPG
Sbjct: 979 VISPDPNLRIEQVGVPIHVAKTLTYPERVIPSNMELMRKLVRNGPDTHPG 1028
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 41/56 (73%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
V +PPPAI+KP LWTGKQIFSLI++PN++C V ANLK KG+ YT + D +
Sbjct: 1191 VTLPPPAIIKPARLWTGKQIFSLIIRPNKECSVKANLKAKGKTYTNGKEFCINDSY 1246
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQSGPGNKYSPSYSNRTGTVPSM 407
MVK+QFRE N A ++SH++F VDS +I Q+ Y+ T P++
Sbjct: 610 MVKEQFRETNVASEVSHISFGVDSMHDINMQASVEMISKNLYNEDTKHTPAL 661
>gi|321473720|gb|EFX84687.1| hypothetical protein DAPPUDRAFT_222950 [Daphnia pulex]
Length = 1387
Score = 185 bits (470), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 86/113 (76%), Positives = 98/113 (86%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNMQPK SRGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MILEDWDFLQLQCALYINSELSGIPLNMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QVG+PE VAKILT+P RV+ AN + ++QLV NG D HPG
Sbjct: 365 GRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIDLMRQLVRNGADVHPG 417
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+ K+ LL GYSKC+ YIR + G+L PGC+ EE+LE+ ILKELS IRD
Sbjct: 702 DVTPGKTLLKEKQTLLDTGYSKCDEYIRLLTLGQLPCLPGCNEEESLESKILKELSGIRD 761
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +ELHPSN PLVM+ SGSKGS+INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 762 QAGEVCKKELHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHF 821
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 822 KRHSKIPAAKGFV 834
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L E + +PPP I KP ALW+GKQIFSLIL+PN + NL+TKG+ Y+
Sbjct: 567 MVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSK 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|321475339|gb|EFX86302.1| hypothetical protein DAPPUDRAFT_45101 [Daphnia pulex]
Length = 1389
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 107/133 (80%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+ K++LL GYSKC+ YIR + G+L PGC+ EE+LE+ ILKELS IRD
Sbjct: 705 DVTPGKTLLKEKQKLLDSGYSKCDEYIRLLTIGQLPCLPGCNVEESLESKILKELSGIRD 764
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +ELHPSN PLVM+ SGSKGS+INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 765 QAGEVCKKELHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHF 824
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 825 KRHSKIPAAKGFV 837
Score = 182 bits (461), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/119 (70%), Positives = 101/119 (84%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQL CAL+INS+ SGIPL MQPK KSRGL+QRLKGKQGRFRGNLSGKRV+F+
Sbjct: 309 ILEDWDFLQLQCALYINSQLSGIPLCMQPKKKSRGLVQRLKGKQGRFRGNLSGKRVNFSG 368
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+PE +AK+LTYP V+ AN E +++LV NGPD HPG + KE+
Sbjct: 369 RTVISPDPNLRIDQVGVPELIAKLLTYPTLVNEANIELMRKLVRNGPDIHPGAIFLKEK 427
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 42/61 (68%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L E + +PPP I KP A+W+GKQIFSLIL+PN P+ NL+TKG+ Y+
Sbjct: 570 MVASMLAGDEVNMVIKLPPPCIQKPAAMWSGKQIFSLILRPNPGNPIKVNLRTKGKEYSK 629
Query: 352 K 352
K
Sbjct: 630 K 630
>gi|321458572|gb|EFX69638.1| hypothetical protein DAPPUDRAFT_62003 [Daphnia pulex]
Length = 1238
Score = 182 bits (461), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW +LQ CAL+INSE SGIP +MQPK SRGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 156 IILEDWYFLQFQCALYINSELSGIPFDMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDFS 215
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+PE VAKILTYP V+ AN E +++LV NGPD HPG + K++
Sbjct: 216 GRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPGAIFLKKK 275
Query: 121 L 121
+
Sbjct: 276 V 276
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 105/133 (78%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+ K++LL G+SKC+ YIR + G+L PGC EE+LE+ I KELS IRD
Sbjct: 553 DVTPGKTLLKEKQKLLDSGFSKCDEYIRLLSIGQLPCLPGCKKEESLESKITKELSGIRD 612
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C ++LHPSN PLVM+ SGSKGS+INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 613 QAGEVCKKKLHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHF 672
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 673 KRHSKIPAAKGFV 685
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L E + +PPP I KP ALW+GKQIFSLIL+PN + NL+TKG+ Y+
Sbjct: 418 MVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSK 477
Query: 352 K 352
K
Sbjct: 478 K 478
>gi|321451320|gb|EFX63013.1| hypothetical protein DAPPUDRAFT_67470 [Daphnia pulex]
Length = 1391
Score = 181 bits (460), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 84/121 (69%), Positives = 100/121 (82%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW +LQ CAL+INSE SGIP +MQPK SRGL+QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 309 IILEDWYFLQFQCALYINSELSGIPFDMQPKKPSRGLVQRLKGKQGRFRGNLSGKRVDFS 368
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+PE VAKILTYP V+ AN E +++LV NGPD HPG + K++
Sbjct: 369 GRTVISPDPNLRIDQVGVPEMVAKILTYPTLVNEANIELMRKLVRNGPDIHPGAIFLKKK 428
Query: 121 L 121
+
Sbjct: 429 V 429
Score = 176 bits (445), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/133 (64%), Positives = 105/133 (78%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+ K++LL G+SKC+ YIR + G+ PGC+ EE+LE+ I KELS IRD
Sbjct: 706 DVTPGKTLLKEKQKLLDSGFSKCDEYIRLLTIGQSPCLPGCNVEESLESKIHKELSGIRD 765
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +ELHPSN PLVM+ SGSKGS+INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 766 QAGEVCKKELHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHF 825
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 826 KRHSKIPAAKGFV 838
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L E + +PPP I KP ALW+GKQIFSLIL+PN + NL+TKG+ Y+
Sbjct: 571 MVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSK 630
Query: 352 K 352
K
Sbjct: 631 K 631
>gi|195478969|ref|XP_002100717.1| GE17218 [Drosophila yakuba]
gi|194188241|gb|EDX01825.1| GE17218 [Drosophila yakuba]
Length = 1383
Score = 181 bits (459), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GYSKC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 707 LLQHKELLLNNGYSKCNEYIEMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQR 423
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT + D +
Sbjct: 582 LPPPALLKPRRLWTGKQMFSLLMRPNDDSHVRLNMVNKGRNYTRNMDLCSNDSW 635
>gi|195566972|ref|XP_002107049.1| GD17239 [Drosophila simulans]
gi|194204446|gb|EDX18022.1| GD17239 [Drosophila simulans]
Length = 723
Score = 181 bits (458), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 47 LLQHKELLLNNGYAKCNEYIDLLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 106
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 107 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 166
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 167 AARGFVQ 173
>gi|321473486|gb|EFX84453.1| hypothetical protein DAPPUDRAFT_209553 [Daphnia pulex]
Length = 1387
Score = 180 bits (457), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 106/133 (79%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL+ K+ LL GYSKC+ YIR + G+L PGC+ EE+LE+ ILKELS IRD
Sbjct: 702 DVTPGKTLLKEKQILLDSGYSKCDEYIRLLTIGQLPCLPGCNEEESLESKILKELSGIRD 761
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +ELHPSN PLVM+ SGSKGS+INISQMIACVGQQA+NGKRVPNGF++RSLPHF
Sbjct: 762 QAGEVCKKELHPSNSPLVMSKSGSKGSYINISQMIACVGQQALNGKRVPNGFEDRSLPHF 821
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 822 KRHSKIPAAKGFV 834
Score = 175 bits (443), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 95/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I E W++LQL AL+IN E SGIPLNMQPK SRG+IQRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 LILEAWDFLQLQSALYINGELSGIPLNMQPKKSSRGIIQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QVG+PE VAKILT+P RV+ AN E +++LV NG D HPG
Sbjct: 365 GRTVISPDPNLRIDQVGVPELVAKILTFPTRVNEANIELMRKLVRNGADVHPG 417
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 41/61 (67%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L E + +PPP I KP ALW+GKQIFSLIL+PN + NL+TKG+ Y+
Sbjct: 567 MVASMLAGDEVNMVIKLPPPCIQKPAALWSGKQIFSLILRPNPGDRIKVNLRTKGKEYSK 626
Query: 352 K 352
K
Sbjct: 627 K 627
>gi|195432649|ref|XP_002064329.1| GK20105 [Drosophila willistoni]
gi|194160414|gb|EDW75315.1| GK20105 [Drosophila willistoni]
Length = 1381
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIPLNM PK RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTMRGIVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VA+ILTYPERV+ AN H+KQLV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVARILTYPERVNPANIRHMKQLVRNGPSLHPGANYVQQR 423
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 103/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K+ LL GY+KC YI +++G LQ QPGCS +ETLEAV+L+ELS IR+ A K C
Sbjct: 707 LLQHKQVLLDRGYAKCNEYIDKLKAGTLQCQPGCSPDETLEAVMLRELSGIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF++R+LPHFDK S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFEDRALPHFDKHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 36/52 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKD 359
+PPPAI+KP+ LWTGKQIFSL+++PN D P+ N+ KGR Y + D
Sbjct: 582 MPPPAILKPRRLWTGKQIFSLLMRPNSDSPILLNMVCKGRNYAGNLDLCNND 633
>gi|194758651|ref|XP_001961575.1| GF14868 [Drosophila ananassae]
gi|190615272|gb|EDV30796.1| GF14868 [Drosophila ananassae]
Length = 1301
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 102/127 (80%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL KE LL GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 628 LLEHKEYLLQRGYAKCNEYIEKLKAGTLQCQPGCTPEETLESVMLRELSGIREQAAKTCF 687
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHFD+ S P
Sbjct: 688 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIP 747
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 748 AARGFVQ 754
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H++QLV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNQANMRHMRQLVRNGPSTHPGANYVQQR 423
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%), Gaps = 8/47 (17%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS 354
+PPPA++KP+ LWTGKQ+FSL+++PN D ++ R ++F S
Sbjct: 582 MPPPALLKPRRLWTGKQMFSLLMRPNHD--------SQNRGFSFGIS 620
>gi|195132669|ref|XP_002010765.1| GI21717 [Drosophila mojavensis]
gi|193907553|gb|EDW06420.1| GI21717 [Drosophila mojavensis]
Length = 1382
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 103/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K+ LL GY+KC YI +++G LQ QPGC+ EETLEAV+L+ELS IR+ A K C
Sbjct: 707 LLQHKQVLLERGYAKCNEYIEKLKAGTLQCQPGCTPEETLEAVMLRELSGIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHFD+ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIPLNM PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN +KQLV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPAMHPGANYVQQR 423
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+PPPAI KP+ LWTGKQ+FSL+++PN D V N+ KGR Y+ + V D +
Sbjct: 582 MPPPAIWKPRRLWTGKQLFSLLMRPNDDSIVRLNMVNKGRNYSGNMDLCVNDSW 635
>gi|281360912|ref|NP_001096987.2| CG17209 [Drosophila melanogaster]
gi|272506113|gb|ABW09418.2| CG17209 [Drosophila melanogaster]
Length = 1383
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 707 LLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 423
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 582 LPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 624
>gi|384871708|gb|AFI25034.1| FI19733p1 [Drosophila melanogaster]
Length = 1410
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 734 LLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 793
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 794 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 853
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 854 AARGFVQ 860
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 331 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 390
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 391 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 450
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 609 LPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 651
>gi|162944844|gb|ABY20491.1| LD04803p [Drosophila melanogaster]
Length = 1410
Score = 180 bits (456), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 734 LLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 793
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 794 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 853
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 854 AARGFVQ 860
Score = 176 bits (447), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 331 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 390
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 391 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 450
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 33/43 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPA++KP+ LWTGKQ+FSL+++PN D V N+ K R YT
Sbjct: 609 LPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKSRNYT 651
>gi|194894264|ref|XP_001978037.1| GG17910 [Drosophila erecta]
gi|190649686|gb|EDV46964.1| GG17910 [Drosophila erecta]
Length = 1383
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 707 LLQHKELLLNNGYAKCNEYIDMLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANMRHMRELVRNGPSMHPGANYVQQR 423
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 3/66 (4%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
F +E S + +PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT +
Sbjct: 570 FLSNEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSHVRLNMVNKGRNYTRNMDL 629
Query: 356 MVKDQF 361
D +
Sbjct: 630 CSNDSW 635
>gi|195355413|ref|XP_002044186.1| GM22579 [Drosophila sechellia]
gi|194129475|gb|EDW51518.1| GM22579 [Drosophila sechellia]
Length = 1369
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 693 LLQHKELLLNNGYAKCNEYIDLLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 752
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 753 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 812
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 813 AARGFVQ 819
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 70/120 (58%), Positives = 86/120 (71%), Gaps = 14/120 (11%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ + +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALY--------------STTTRGIVQRLKGKQGRFRCNLSGKRVDFS 349
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 350 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 409
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 34/43 (79%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 568 LPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 610
>gi|31544947|gb|AAH53071.1| Polr3a protein [Mus musculus]
Length = 649
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 71.2 bits (173), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|390350087|ref|XP_001182534.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Strongylocentrotus purpuratus]
Length = 485
Score = 179 bits (455), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 80/113 (70%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSETSG+PLNMQPK +RG QRLKGKQGRFRGNLSGKRVD++
Sbjct: 63 MIMEDWDFLQLACALYINSETSGLPLNMQPKKPTRGFCQRLKGKQGRFRGNLSGKRVDYS 122
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SRTVISPDPNL+I +V +PE VAK+LTYPE+V +N +++LV+NG D HPG
Sbjct: 123 SRTVISPDPNLRIDEVAVPELVAKLLTYPEKVTKSNMALMRKLVMNGCDAHPG 175
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RSR L + + SS +E + +PPPAI KP LWTGKQ+FSLIL+PN D V ANL
Sbjct: 319 RSRACQLVAAMLSS---QETNMRITLPPPAIQKPVRLWTGKQVFSLILRPNSDSDVKANL 375
Query: 343 KTKGRAYTFKFSIMVKDQF 361
+ KG+ YT + V D F
Sbjct: 376 RAKGKNYTSGEDLCVNDSF 394
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 38/44 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAV 156
GLL+A+++LL EGYSKC+ YI+ +E G+LQTQ GC+AEETLE V
Sbjct: 436 GLLQAQKQLLHEGYSKCDEYIQQLEVGKLQTQAGCTAEETLENV 479
>gi|125660368|gb|ABN49412.1| IP18441p [Drosophila melanogaster]
Length = 395
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 144 LLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 203
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 204 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 263
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 264 AARGFVQ 270
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F +E S + +PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 7 FLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 61
>gi|195566968|ref|XP_002107047.1| GD17238 [Drosophila simulans]
gi|194204444|gb|EDX18020.1| GD17238 [Drosophila simulans]
Length = 370
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/154 (57%), Positives = 111/154 (72%), Gaps = 5/154 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 9 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 68
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 69 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 128
Query: 121 LLSEGYSKCEGY---IRAMESGRLQTQPGCSAEE 151
+ K Y + A + + + P CSAE+
Sbjct: 129 --GSSFKKYLAYGNPVAAQDVHYVPSGPKCSAED 160
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 3/55 (5%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F +E S + +PPPA++KP+ LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 246 FLANEDSTMHIKLPPPALLKPRRLWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 300
>gi|397483770|ref|XP_003813067.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1 [Pan
paniscus]
Length = 1267
Score = 179 bits (454), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKEL 161
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLE ++K L
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLERRLVKSL 756
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|195399321|ref|XP_002058269.1| GJ15582 [Drosophila virilis]
gi|194150693|gb|EDW66377.1| GJ15582 [Drosophila virilis]
Length = 1044
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIPLNM PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN +KQLV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRQMKQLVRNGPSMHPGANYVQQR 423
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 83/127 (65%), Positives = 101/127 (79%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K+ LL GY+KC YI +++G LQ QPGC+ ETLEAV+L+ELS IR+ A K C
Sbjct: 707 LLHHKQILLERGYAKCNDYIEKLKAGTLQCQPGCTPAETLEAVMLRELSGIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHFD+ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
F +E S + +PPPAI KP+ LWTGKQ+FSL+++PN D V N+ KGR Y +
Sbjct: 570 FLANEDSTMRIQMPPPAIWKPRRLWTGKQLFSLLMRPNDDSNVRLNMVNKGRNYAGNMDL 629
Query: 356 MVKDQF 361
D +
Sbjct: 630 CANDSW 635
>gi|195175545|ref|XP_002028504.1| GL19707 [Drosophila persimilis]
gi|194104024|gb|EDW26067.1| GL19707 [Drosophila persimilis]
Length = 968
Score = 178 bits (452), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/127 (66%), Positives = 102/127 (80%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL KE LL GY+KC YI ++SG LQ QPGC+ +ETLE+V+L+ELS IR+ A K C
Sbjct: 707 LLHHKEILLERGYAKCNDYIEHLKSGTLQCQPGCTPKETLESVMLRELSGIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHFD+ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFDRHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 96/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+K LV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQR 423
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
F ++E S + IP PA++KP+ LWTGKQIFSL+++PN D + N+ KGR YT +
Sbjct: 570 FLDNEDSTMNIQIPAPALLKPRRLWTGKQIFSLLMRPNSDSHIRLNMVNKGRNYTKNMDL 629
Query: 356 MVKD 359
+ D
Sbjct: 630 CIND 633
>gi|195048078|ref|XP_001992466.1| GH24768 [Drosophila grimshawi]
gi|193893307|gb|EDV92173.1| GH24768 [Drosophila grimshawi]
Length = 1303
Score = 178 bits (452), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 83/126 (65%), Positives = 102/126 (80%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K+ LL GY+KC YI ++SG LQ QPGC+ EETLEAV+L+ELS IR+ A K C
Sbjct: 628 LLQHKQVLLERGYAKCNEYIEKLKSGTLQCQPGCTPEETLEAVMLRELSGIREQAAKTCF 687
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQA++GKRVPNGF+NR+LPHF++ S P
Sbjct: 688 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAVSGKRVPNGFENRALPHFERHSAIP 747
Query: 234 ASKGNV 239
A++G V
Sbjct: 748 AARGFV 753
Score = 177 bits (450), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 83/120 (69%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIPLNM PK +RG++QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPLNMAPKKTTRGIVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN +KQLV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRIMKQLVRNGPSVHPGANYVQQR 423
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%), Gaps = 8/47 (17%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS 354
+PPPAI KP+ LWTGKQ+FSL+++PN D +K R ++F S
Sbjct: 582 MPPPAIWKPRRLWTGKQMFSLLMRPNDD--------SKNRGFSFGIS 620
>gi|326923515|ref|XP_003207981.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Meleagris gallopavo]
Length = 429
Score = 178 bits (451), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Score = 41.2 bits (95), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRESDVAKKISHICFGMKSPEEMRQQA 32
>gi|307166498|gb|EFN60583.1| DNA-directed RNA polymerase III subunit RPC1 [Camponotus
floridanus]
Length = 1384
Score = 178 bits (451), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 100/128 (78%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GL++A+E +L+ YSKC YI+ ME G+L +QPGCS EETLE IL ELSVIRD+ GKAC
Sbjct: 698 GLVQARESILNTHYSKCHEYIKLMEQGQLASQPGCSVEETLETKILNELSVIRDNVGKAC 757
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ELH +N PL MAL GSKGS+IN+SQMI CVGQQAING RVPNGF+NR+LPH +
Sbjct: 758 LKELHRTNTPLTMALCGSKGSYINVSQMIGCVGQQAINGHRVPNGFENRALPHVLAQLRT 817
Query: 233 PASKGNVK 240
P KG VK
Sbjct: 818 PDVKGFVK 825
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 82/110 (74%), Gaps = 12/110 (10%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQLHC L+INSE SGIP +MQPK RG++QRLKGKQGRFRGNLSGKRVDF+SRT
Sbjct: 310 EQWDYLQLHCGLYINSEMSGIPAHMQPKKFGRGIVQRLKGKQGRFRGNLSGKRVDFSSRT 369
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VG+P +A ILTYPE+V+ +N E ++ LV NGP+ HPG
Sbjct: 370 ------------VGVPIQIAMILTYPEKVNSSNIELMRALVRNGPNVHPG 407
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 42/57 (73%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+V +P PAI+KP LWTGKQIFSLI++P+ +CPV ANLKTKG+ YT + D +
Sbjct: 571 TVTLPIPAILKPVKLWTGKQIFSLIIRPSPECPVKANLKTKGKTYTTGEEFCINDSY 627
>gi|355712747|gb|AES04452.1| polymerase III polypeptide A, 155kDa [Mustela putorius furo]
Length = 248
Score = 177 bits (450), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 1 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 60
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 61 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 113
>gi|340379445|ref|XP_003388237.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like
[Amphimedon queenslandica]
Length = 1402
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 104/128 (81%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GL+ AK +L+ EGY+ C+ +I++ +LQTQPGC+A+ETLEA I+ ELS IR+ +GK C
Sbjct: 705 GLVNAKNKLVEEGYANCDQFIQSFLDKKLQTQPGCTADETLEAKIVHELSKIREDSGKVC 764
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
ELHP+N PL MAL GSKGSFINISQMIACVGQQAI+GKR P+GF++R+LPHF + SK
Sbjct: 765 KTELHPTNTPLNMALCGSKGSFINISQMIACVGQQAISGKRTPDGFEDRTLPHFPRNSKA 824
Query: 233 PASKGNVK 240
PA+KG VK
Sbjct: 825 PAAKGFVK 832
Score = 171 bits (432), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 78/113 (69%), Positives = 93/113 (82%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI E W++LQL AL+INSE SGIP +M PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 MILEMWDYLQLQVALYINSEVSGIPPSMIPKKTTRGFVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN++I QV +P HVAKI+TYPE+V N ++QLV+NGPDKHPG
Sbjct: 364 GRTVISPDPNMRIDQVAVPIHVAKIMTYPEKVTKHNIGLMRQLVINGPDKHPG 416
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
++S+ L + + IPPPAI+KP LWTGKQ+ S+++ PN+ V NL+ KG+ YT
Sbjct: 565 IVSAMLSNHDSNIKIDIPPPAIIKPVKLWTGKQVMSVLISPNKKSNVIINLRAKGKQYTK 624
Query: 352 KFSIMVKDQF 361
+ D F
Sbjct: 625 GEDMCSNDSF 634
>gi|196004558|ref|XP_002112146.1| hypothetical protein TRIADDRAFT_55878 [Trichoplax adhaerens]
gi|190586045|gb|EDV26113.1| hypothetical protein TRIADDRAFT_55878 [Trichoplax adhaerens]
Length = 941
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
++ K L+ GY KC+ +I+ + GRL QPG +A+ETLEAVIL+ELSVIR+ AGK CL
Sbjct: 629 VINGKRELVKNGYDKCDQHIQDFKDGRLHNQPGFTADETLEAVILRELSVIREDAGKICL 688
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELHPSN PL MAL GSKGS INISQMI+CVGQQA++G+R+PNGF+NR+LP+FD+ SK P
Sbjct: 689 KELHPSNAPLTMALCGSKGSNINISQMISCVGQQAVSGRRIPNGFENRALPYFDRDSKVP 748
Query: 234 ASKGNVK 240
A+KG V+
Sbjct: 749 AAKGFVE 755
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/141 (53%), Positives = 97/141 (68%), Gaps = 5/141 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++ E W+ LQ+H +L+INSETSG+P QP RG QRLKGK GRFRGNLSGKRVD++
Sbjct: 306 ILMELWDNLQIHVSLYINSETSGLPYGSQPNRPIRGFCQRLKGKSGRFRGNLSGKRVDYS 365
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
+RTVISPDPNL+I +V IP VA LTYP++V AN LK+L+LNG DKHPG
Sbjct: 366 TRTVISPDPNLRIDEVAIPYPVAMTLTYPQKVCRANIRFLKKLILNGADKHPG-----AN 420
Query: 121 LLSEGYSKCEGYIRAMESGRL 141
+ E +K Y++ G++
Sbjct: 421 FVMEEKTKLRKYLKYGNRGKI 441
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKP 332
+S SS L R T + +P P+I+KP LWTGKQ+ S +L P
Sbjct: 533 VSQFCSSMLDSRTASTEIDLPVPSIIKPVQLWTGKQVISALLSP 576
>gi|147905844|ref|NP_001080302.1| polymerase (RNA) III (DNA directed) polypeptide A, 155kDa [Xenopus
laevis]
gi|28422598|gb|AAH44092.1| Rpc155-prov protein [Xenopus laevis]
Length = 489
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIP+NM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 304 MIMEDWDFLQLQCALYINSELSGIPMNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN + +++LV NGP+ HPG
Sbjct: 364 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNQANMQLMRKLVQNGPEIHPG 416
>gi|198461889|ref|XP_001352259.2| GA14391 [Drosophila pseudoobscura pseudoobscura]
gi|198142492|gb|EAL29345.2| GA14391 [Drosophila pseudoobscura pseudoobscura]
Length = 644
Score = 177 bits (448), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/120 (68%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+K LV NGP KHPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGKHPGANYVQQR 423
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
F ++E S + IP PA++KP+ LWTGKQIFSL+++PN D + N+ KGR YT +
Sbjct: 570 FLDNEDSTMNIQIPAPALLKPRRLWTGKQIFSLLMRPNSDSHIRLNMVNKGRNYTKNMDL 629
Query: 356 MVKD 359
+ D
Sbjct: 630 CIND 633
>gi|324500904|gb|ADY40409.1| DNA-directed RNA polymerase III subunit RPC1 [Ascaris suum]
Length = 1405
Score = 176 bits (447), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 82/128 (64%), Positives = 102/128 (79%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+ K LL+ GY KC+ YI +++ G L+ QPGC+ ETLEA+ILKELS IRDHAG+AC
Sbjct: 705 GLLKEKAALLAAGYKKCDEYITSLKEGHLKAQPGCTEHETLEALILKELSAIRDHAGQAC 764
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF++RSLPHF++ K
Sbjct: 765 LRNLSRHNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKT 824
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 825 PAAKGFVE 832
Score = 172 bits (435), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 95/120 (79%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E WE LQ+ CAL+INSE SG+P +MQPK RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 303 ISETWEHLQVQCALYINSELSGLPPDMQPKKPIRGFTQRLKGKQGRFRGNLSGKRVDFSG 362
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I QVG+P HVAKILT+PE V+ +N E +++LV+NG D HPG ERL
Sbjct: 363 RTVISPDPNLRIDQVGVPIHVAKILTFPEIVNESNMERMRKLVINGDDIHPGANHIVERL 422
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
++ + IPPPAI KP LWTGKQ+ LI++P+ D V+ NL TK ++YT VKD +
Sbjct: 576 QSRIRIPPPAIRKPVELWTGKQLVELIIRPDVDSKVSLNLTTKNKSYTGNEEFCVKDSY 634
>gi|170584528|ref|XP_001897051.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
gi|158595586|gb|EDP34129.1| RNA polymerase Rpb1, domain 1 family protein [Brugia malayi]
Length = 1404
Score = 175 bits (444), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 82/127 (64%), Positives = 101/127 (79%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K LLS GY C+ YI +++ GRL+ QPGC+ ETLEA+ILKELS IRDHAG+ACL
Sbjct: 706 LLKEKSDLLSNGYKICDDYIESLKEGRLKAQPGCTEYETLEALILKELSAIRDHAGQACL 765
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF++RSLPHF++ K P
Sbjct: 766 RNLSRHNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTP 825
Query: 234 ASKGNVK 240
A+KG V+
Sbjct: 826 AAKGFVE 832
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 79/119 (66%), Positives = 95/119 (79%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ LQ+ CAL+INSE SG+P +MQPK +RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 303 ISETWDHLQVQCALYINSELSGLPPDMQPKRTTRGFTQRLKGKQGRFRGNLSGKRVDFSG 362
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+P +VAKILT+PE V+ AN E +++L+LNG D HPG ER
Sbjct: 363 RTVISPDPNLRIDQVGVPVYVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVER 421
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
IPPPAI+KP LWTGKQ+ LI++P+ D ++ NL TK ++YT VKD +
Sbjct: 581 IPPPAILKPVELWTGKQLVELIIRPDVDSKISLNLTTKNKSYTGNEEFCVKDSY 634
>gi|25145495|ref|NP_501127.2| Protein RPC-1 [Caenorhabditis elegans]
gi|351059526|emb|CCD66619.1| Protein RPC-1 [Caenorhabditis elegans]
Length = 1400
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 99/126 (78%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LLR K +L+ GYSKC YI+ +E G+L+ QPGC+ EETLE++IL+ELS IRDHAG+ CL
Sbjct: 705 LLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCL 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 765 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 824
Query: 234 ASKGNV 239
+KG V
Sbjct: 825 EAKGFV 830
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 87/110 (79%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ CAL+INSE SG+P +MQPK R QRLKGKQGRFRGNL GKRVDF+ RT
Sbjct: 304 ETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRT 363
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVA LT+PE V+ +N E ++QLV+NG D HPG
Sbjct: 364 VISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+T + IPPPAI +P LWTGKQ+ LI++P++ V+ NL K ++YT + KD +
Sbjct: 575 QTKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSY 633
>gi|195173803|ref|XP_002027675.1| GL20670 [Drosophila persimilis]
gi|194114614|gb|EDW36657.1| GL20670 [Drosophila persimilis]
Length = 424
Score = 174 bits (442), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 81/120 (67%), Positives = 96/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 84 LIYEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 143
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+K LV NGP HPG ++R
Sbjct: 144 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNLANIRHMKHLVRNGPGTHPGANYVQQR 203
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 3/64 (4%)
Query: 299 FREHETSVI---IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSI 355
F ++E S + IP PA++KP+ LWTGKQIFSL+++PN D + N+ KGR YT +
Sbjct: 350 FLDNEDSTMNIQIPAPALLKPRRLWTGKQIFSLLMRPNSDSHIRLNMVNKGRNYTKNMDL 409
Query: 356 MVKD 359
+ D
Sbjct: 410 CIND 413
>gi|312073209|ref|XP_003139417.1| RNA polymerase Rpb1 [Loa loa]
gi|307765420|gb|EFO24654.1| RNA polymerase Rpb1 [Loa loa]
Length = 1403
Score = 174 bits (440), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 81/128 (63%), Positives = 100/128 (78%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
LL+ K LL GY C+ YI +++ GRL+ QPGC+ ETLEA+ILKELS IRDHAG+AC
Sbjct: 705 ALLKEKSDLLRNGYKVCDDYIESLKEGRLKAQPGCTEYETLEALILKELSAIRDHAGQAC 764
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF++RSLPHF++ K
Sbjct: 765 LRNLSRHNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKT 824
Query: 233 PASKGNVK 240
PA+KG V+
Sbjct: 825 PAAKGFVE 832
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 95/119 (79%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ LQ+ CAL+INSE SG+P +MQPK +RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 303 ISETWDHLQVQCALYINSELSGLPPDMQPKRATRGFTQRLKGKQGRFRGNLSGKRVDFSG 362
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+P HVAKILT+PE V+ AN E +++L+LNG D HPG ER
Sbjct: 363 RTVISPDPNLKIDQVGVPVHVAKILTFPEIVNEANIERMRKLILNGDDIHPGANHIVER 421
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
IPPPAI+KP LWTGKQ+ LI++P+ D +N NL TK ++YT VKD +
Sbjct: 581 IPPPAILKPAELWTGKQLAELIIRPDVDSKINLNLTTKNKSYTGNEEFCVKDSY 634
>gi|268535924|ref|XP_002633097.1| C. briggsae CBR-RPC-1 protein [Caenorhabditis briggsae]
Length = 1402
Score = 174 bits (440), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 80/126 (63%), Positives = 98/126 (77%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K +L+ GY KC YIR +E G+L+ QPGC+ EETLEA+IL+ELS IRDHAG+ CL
Sbjct: 705 LLQEKGQLVDNGYEKCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCL 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 765 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 824
Query: 234 ASKGNV 239
+KG V
Sbjct: 825 EAKGFV 830
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 87/110 (79%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ CAL+INSE SG+P +MQPK R QRLKGKQGRFRGNL GKRVDF+ RT
Sbjct: 304 ETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRT 363
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVA LT+PE V+ +N + +++L++NG D HPG
Sbjct: 364 VISPDPNLRIDQVGVPVHVAMTLTFPEIVNASNIDKMRKLIVNGSDVHPG 413
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
++ + IPPPAI +P LWTGKQ+ LI++P++ V+ NL K ++Y+ + KD +
Sbjct: 575 QSKIRIPPPAIRRPVELWTGKQLIELIIRPDKGSQVSLNLTAKNKSYSGNLELCSKDSY 633
>gi|308449389|ref|XP_003087948.1| CRE-RPC-1 protein [Caenorhabditis remanei]
gi|308250793|gb|EFO94745.1| CRE-RPC-1 protein [Caenorhabditis remanei]
Length = 1027
Score = 173 bits (438), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 98/126 (77%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K +L+ GY +C YIR +E G+L+ QPGC+ EETLEA+IL+ELS IRDHAG+ CL
Sbjct: 306 LLQEKGQLVDTGYEQCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCL 365
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 366 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 425
Query: 234 ASKGNV 239
+KG V
Sbjct: 426 EAKGFV 431
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+T + IPPPAI KP LWTGKQ+ LI++P++ ++ NL K ++Y+ + KD +
Sbjct: 176 QTKIRIPPPAIRKPVELWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNLELCSKDSY 234
>gi|308491392|ref|XP_003107887.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
gi|308249834|gb|EFO93786.1| hypothetical protein CRE_12654 [Caenorhabditis remanei]
Length = 1406
Score = 172 bits (437), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 79/126 (62%), Positives = 98/126 (77%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K +L+ GY +C YIR +E G+L+ QPGC+ EETLEA+IL+ELS IRDHAG+ CL
Sbjct: 710 LLQEKGQLVDTGYEQCAQYIRELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCL 769
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 770 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 829
Query: 234 ASKGNV 239
+KG V
Sbjct: 830 EAKGFV 835
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 87/110 (79%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ CAL+INSE SG+P +MQPK R QRLKGKQGRFRGNL GKRVDF+ RT
Sbjct: 309 ETWEHLQIQCALYINSEMSGLPPDMQPKKAMRSFTQRLKGKQGRFRGNLCGKRVDFSGRT 368
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVA LT+PE V+ +N E ++QLV+NG D HPG
Sbjct: 369 VISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDIHPG 418
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+T + IPPPAI KP LWTGKQ+ LI++P++ ++ NL K ++Y+ + KD +
Sbjct: 580 QTKIRIPPPAIRKPVELWTGKQLIELIIRPDKGSQISLNLTAKNKSYSGNLELCSKDSY 638
>gi|302661310|ref|XP_003022324.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
gi|291186264|gb|EFE41706.1| hypothetical protein TRV_03535 [Trichophyton verrucosum HKI 0517]
Length = 1444
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 124/352 (35%), Positives = 174/352 (49%), Gaps = 45/352 (12%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQRIRNGTKTWPG----ANYL 435
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ EG S RL + G L++I + + + E H NG
Sbjct: 436 IKEG-----------NSFRLFLKYG-------------NLNMIANQLREGDIVERHLENG 471
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD------KFSKDPAS 235
+V L + S +S + V + R+ N FD + +
Sbjct: 472 DIV--LFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEA 529
Query: 236 KGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSS 295
+ L G + +A+ ++ + I+A L K ++ S+L S
Sbjct: 530 RAEAMEL-MGVKSNLATPKNGEPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLDS 588
Query: 296 SLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S RF +PPPA +KP+ LWTGKQ+FS++++PN+DCPV NL R
Sbjct: 589 STRFE-------LPPPATIKPQMLWTGKQVFSVLMRPNKDCPVKVNLDAACR 633
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L++ K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 716 DVYPGESLVKLKDTLINTAFQQCDDLIAA--ASKEKPQMGKSDSRQTAENEITGILNKVR 773
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ E+ N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 774 QQAGEYCISEVSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 833
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 834 FARHSQHALAKGFVR 848
>gi|20159757|gb|AAM12031.1| RNA polymerase III subunit RPC155-C [Homo sapiens]
Length = 435
Score = 172 bits (436), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/102 (79%), Positives = 91/102 (89%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+G+LQ QPGC+AEETLEA+ILKELSVIRDHAG ACL+EL SN PL MAL GSKGSFINI
Sbjct: 2 TGKLQQQPGCTAEETLEALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINI 61
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK PA+KG V
Sbjct: 62 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 103
>gi|449683564|ref|XP_002165029.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Hydra magnipapillata]
Length = 537
Score = 172 bits (435), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 77/113 (68%), Positives = 93/113 (82%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQL CAL+IN E SGIP+NMQPK +RG +QRL GKQGRFRGNLSGKRVDF+
Sbjct: 308 IIMEDWDFLQLQCALYINGEMSGIPMNMQPKKATRGFVQRLNGKQGRFRGNLSGKRVDFS 367
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P HVAK+LT+PE V+ N + +K+LV NG D HPG
Sbjct: 368 GRTVISPDPNLRIDQVAVPIHVAKVLTFPEPVNKFNIKLMKELVKNGADIHPG 420
>gi|402586876|gb|EJW80813.1| DNA-directed RNA polymerase, partial [Wuchereria bancrofti]
Length = 735
Score = 171 bits (434), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/119 (67%), Positives = 95/119 (79%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ LQ+ CAL+INSE SG+P +MQPK +RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 242 ISETWDHLQVQCALYINSELSGLPPDMQPKRATRGFTQRLKGKQGRFRGNLSGKRVDFSG 301
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL+I QVG+P HVAKILT+PE V+ AN E +++L+LNG D HPG ER
Sbjct: 302 RTVISPDPNLRIDQVGVPVHVAKILTFPEIVNKANIERMRKLILNGDDIHPGANHIVER 360
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 71/92 (77%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
LL+ K LLS GY C+ YI +++ GRL+ QPGC+ ETLEA+ILKELS IRDHAG+AC
Sbjct: 644 ALLKEKSDLLSNGYKICDDYIESLKEGRLKAQPGCTESETLEALILKELSAIRDHAGQAC 703
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACV 204
L+ L N PL MA+ GSKGSFINISQMIACV
Sbjct: 704 LRNLSRHNAPLTMAVCGSKGSFINISQMIACV 735
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 37/54 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
IPPPAI+KP LWTGKQ+ LI++P+ D +N NL TK ++YT VKD +
Sbjct: 520 IPPPAILKPVELWTGKQLIELIIRPDVDSKINLNLTTKNKSYTGNEEFCVKDSY 573
>gi|296827068|ref|XP_002851111.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae
CBS 113480]
gi|238838665|gb|EEQ28327.1| DNA-directed RNA polymerase III largest subunit [Arthroderma otae
CBS 113480]
Length = 1443
Score = 169 bits (429), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/369 (34%), Positives = 180/369 (48%), Gaps = 52/369 (14%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKSIRGLCQRLKGKQGRFRGNLSGKRVDFSG 378
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q V NG PG L
Sbjct: 379 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCVRNGTKTWPG----ANYL 434
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ +G S RL + G L++I + + + E H +G
Sbjct: 435 IKQG-----------NSFRLFLKYG-------------NLNMIANQLSEGDIVERHLEDG 470
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS-------KDPA 234
+V L + S +S + V + R+ N FD + A
Sbjct: 471 DIV--LFNRQPSLHKLSILSHFVKVRPHRTFRLNECVCNPYNADFDGDEMNLHVPQTEEA 528
Query: 235 SKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLS 294
++ + N L A+ A ++ + I+A L K ++ S+L
Sbjct: 529 RSEAMELMGVKNNL--ATPKNGAPIIAAIQDFITAAYLLSSKDNFFDRKTFTQICLSMLD 586
Query: 295 SSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS 354
SS R +PPPA +KP+ LWTGKQ+FS++++PN+D PV NL R +
Sbjct: 587 SSTRLE-------LPPPATLKPQMLWTGKQVFSVLMRPNKDSPVKVNLDAACRQFK---- 635
Query: 355 IMVKDQFRE 363
VKDQ R+
Sbjct: 636 -RVKDQPRD 643
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L++ K+ L+ + +C+ I +++ + + Q G S + +T E I L+ +R
Sbjct: 715 DVYPGTGLVKLKDTLIDNAFKQCDDLI--IKASKEKPQKGKSDSRQTAENEITGILNKLR 772
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 773 QQAGEYCISELSKHNAPLIMAKCGSKGSDINVSQMVAVVGQQSIENSRVSKGFQDRTLPH 832
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 833 FPRHSQHALAKGFVR 847
>gi|341888769|gb|EGT44704.1| hypothetical protein CAEBREN_28388 [Caenorhabditis brenneri]
Length = 1024
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 77/126 (61%), Positives = 99/126 (78%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K +L+ +GY +C +I+ +E G+L+ QPGC+ EETLEA+IL+ELS IRDHAG+ CL
Sbjct: 705 LLQEKGQLVDKGYEQCAQFIKELEEGKLKAQPGCTEEETLEAIILRELSTIRDHAGQVCL 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 765 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 824
Query: 234 ASKGNV 239
+KG V
Sbjct: 825 EAKGFV 830
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 87/110 (79%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ CAL+INSE SG+P +MQPK R QRLKGKQGRFRGNL GKRVDF+ RT
Sbjct: 304 ETWEHLQIQCALYINSEMSGLPADMQPKKAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRT 363
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVA LT+PE V+ +N E ++QLV+NG D HPG
Sbjct: 364 VISPDPNLRIDQVGVPIHVAMTLTFPEIVNKSNIEKMRQLVINGSDIHPG 413
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
+T + IPPPAI++P LWTGKQ+ LI++P++ V+ NL TK ++Y+ KD +
Sbjct: 575 QTKIRIPPPAILRPVELWTGKQLIELIIRPDKGSQVSLNLTTKNKSYSGNLEFCNKDSY 633
>gi|328858469|gb|EGG07581.1| hypothetical protein MELLADRAFT_47986 [Melampsora larici-populina
98AG31]
Length = 1421
Score = 168 bits (426), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 117/359 (32%), Positives = 179/359 (49%), Gaps = 55/359 (15%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E WE+LQL A++IN+E G+P M K +G QRLKGK GRFRGNLSGKRVDF+
Sbjct: 316 IMEQWEFLQLSVAMYINAELPGVPSQMGAKP-IKGFCQRLKGKTGRFRGNLSGKRVDFSG 374
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVI PDPNL I +V +P+ +AK+LTYPERV N + L+Q + NGPD HPG L
Sbjct: 375 RTVIGPDPNLSITEVAVPDRMAKVLTYPERVTAHNLDRLRQCIRNGPDVHPG----ANYL 430
Query: 122 LSEGYSKCEG----YIRAMESG-RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQEL 176
++ G G + R++ G R Q +T+E + H G L
Sbjct: 431 IASGAPGTAGAATQFKRSLRFGNRNQIANTLRMGDTVERHL---------HDGDVVLFNR 481
Query: 177 HPSNGPLVMALSGSK---GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
PS L + +K + ++ + +G + N +P ++ +
Sbjct: 482 QPSLHKLSIMSHRAKIRPWRTLRFNECVCTPYNADFDGDEM-----NLHVPQTEEARTEA 536
Query: 234 ASKGNVKF----LRYGNRLKIASE--LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNG 287
NVK+ R G + A++ + ++YL+ R + + +Q+
Sbjct: 537 TELMNVKYNLVTPRNGEPIIAATQDFITASYLLSR-------KDNFYDRQQ--------- 580
Query: 288 WLSSVLSSSLRFREHET-SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+ +L++ T + +PPP I KP LWTGKQ+F+++++PN+ PV N++ K
Sbjct: 581 -----FTQALQYLSDATLHIDLPPPVIWKPIRLWTGKQVFNVLMRPNKASPVKVNIEAK 634
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+++ Y + I++ ++G+LQT PG ++TLEA+I LS +RD
Sbjct: 720 DVTPGERLSTQKESLVAKAYKETNDLIKSSKAGQLQTLPGRDQDQTLEAMISGVLSKVRD 779
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N PL+MA GSKGS IN++QM+ACVGQQ I+G R+P+GF +RSLPHF
Sbjct: 780 SLGVICMAELTRHNAPLIMATCGSKGSTINVAQMVACVGQQIISGNRIPDGFQDRSLPHF 839
Query: 227 DKFSKDPASKGNVK 240
K +K+P +KG V+
Sbjct: 840 HKKAKEPPAKGFVR 853
>gi|320170274|gb|EFW47173.1| polymerase III polypeptide A [Capsaspora owczarzaki ATCC 30864]
Length = 1472
Score = 167 bits (424), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 81/127 (63%), Positives = 99/127 (77%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+AKE +L GY+KC+GYI A L +QPGCS E+TLE+VI ELS IR+ AGK CL
Sbjct: 753 LLQAKEVMLQVGYTKCDGYIEAFRGNALPSQPGCSPEQTLESVINGELSQIREDAGKMCL 812
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL SN PL MAL GSKGS INISQMIACVGQQ ++G R+PNGF++R+LPHF K S+ P
Sbjct: 813 EELDKSNAPLRMALCGSKGSNINISQMIACVGQQTVSGTRIPNGFEDRALPHFPKKSRFP 872
Query: 234 ASKGNVK 240
A+KG V+
Sbjct: 873 AAKGFVR 879
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+WE LQ CA++IN + + L Q RG QRLKGK GRFRGNLSGKRVDF+SRT
Sbjct: 307 EEWEHLQNVCAMYINGDVAN-QLPQQNLKPVRGFCQRLKGKTGRFRGNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PEHVAKILT+PERV N E ++QL++ G D++PG
Sbjct: 366 VISPDPNLRIDEVAVPEHVAKILTFPERVTSHNIEEMRQLIIAGTDQYPG 415
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKD 359
+ IPPPAI+KP LWTGKQ+FS++++PN+ C NL+T R Y+ K M K+
Sbjct: 625 IDIPPPAILKPVRLWTGKQLFSVLMRPNKQCKARMNLRTASRTYSKKDEEMCKN 678
>gi|391343926|ref|XP_003746256.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC1-like [Metaseiulus occidentalis]
Length = 1386
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 76/113 (67%), Positives = 94/113 (83%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI ED ++LQL AL++N E SG+PL+MQPK ++G+IQRLKGK+GRFR NLSGKRVDF+
Sbjct: 306 MIVEDRDFLQLQFALYVNGEISGVPLHMQPKRPTKGIIQRLKGKEGRFRQNLSGKRVDFS 365
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QVGIP H+AKILT+PE V N + +K++V+NGPDKHPG
Sbjct: 366 GRTVISPDPNLHIDQVGIPVHMAKILTFPEMVTRHNLDLMKKMVMNGPDKHPG 418
Score = 164 bits (415), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 79/134 (58%), Positives = 99/134 (73%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ K L+ GYS+C+ YIR ++ G L QPGC+ E+TLEA+ LKELS IRD
Sbjct: 702 DVTPGASLVAQKRELVRVGYSRCQEYIRKLDQGTLPAQPGCTEEQTLEALCLKELSSIRD 761
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C +ELH + PLVMAL GSKGSFINISQM CVGQQAI+G RV NGF++RSLPHF
Sbjct: 762 KTGNICTEELHQTCSPLVMALCGSKGSFINISQMATCVGQQAISGHRVGNGFEDRSLPHF 821
Query: 227 DKFSKDPASKGNVK 240
++ +KDP ++G V+
Sbjct: 822 ERKTKDPDARGFVE 835
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 44/70 (62%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
++S + R+ T+V +P PAI+KPK LWTGKQIFSLILKP++ V +L+ K + T
Sbjct: 567 LISQFVAGRDVSTTVELPHPAILKPKVLWTGKQIFSLILKPSKSSDVRIHLRAKNKNXTK 626
Query: 352 KFSIMVKDQF 361
+ D +
Sbjct: 627 NEDMCTNDNY 636
>gi|402589185|gb|EJW83117.1| hypothetical protein WUBG_05968, partial [Wuchereria bancrofti]
Length = 279
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/116 (65%), Positives = 94/116 (81%)
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLV 184
GY C+ YI +++ GRL+ QPGC+ ETLEA+ILKELS IRDHAG+ACL+ L N PL
Sbjct: 2 GYKICDDYIESLKEGRLKAQPGCTESETLEALILKELSAIRDHAGQACLRNLSRHNAPLT 61
Query: 185 MALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
MA+ GSKGSFINISQMIACVGQQAI+G R P+GF++RSLPHF++ K PA+KG V+
Sbjct: 62 MAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEDRSLPHFERRQKTPAAKGFVE 117
>gi|66818062|ref|XP_642724.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
gi|74860514|sp|Q86AQ5.1|RPC1_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60470813|gb|EAL68785.1| RNA polymerase III, largest subunit [Dictyostelium discoideum AX4]
Length = 1450
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 87/112 (77%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQ CA++INS+ G+PL M+P RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 299 IMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSG 358
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ +A +TYPERV N E L++ V+NGPD+HPG
Sbjct: 359 RTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG 410
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 108 PDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
PD P L R K ++ Y KC +++ ESG LQ GCS E+T EA + + LS IR
Sbjct: 689 PDIKPAEDLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIR 748
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D GK C+ +L N PL+M L GSKGS INI+QMI CVGQQ +NG R+PNGF NR+ PH
Sbjct: 749 DDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPH 808
Query: 226 FDKFSKDPASKGNV 239
F F+K+P SKG V
Sbjct: 809 FKHFAKNPKSKGFV 822
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVK 358
F + + +PPPAI+KP LWTGKQIF ++L+P+ V N +T+ R Y+ + K
Sbjct: 563 FADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPK 622
Query: 359 D---QFRERNTAC 368
D FR C
Sbjct: 623 DGYVYFRNSELMC 635
>gi|316997021|dbj|BAJ52638.1| RNA polymerase III largest subunit [Monosiga ovata]
Length = 931
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 97/127 (76%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL KE L+ GY KCE +++ ++G+LQTQPGC+AE+TLE V+ KEL+ IR+ +GKAC
Sbjct: 225 LLETKEGLVRAGYQKCEDFVQQYKAGQLQTQPGCNAEQTLENVMTKELNSIRESSGKACN 284
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L SN PL+MA GSKGS +N+SQMIACVGQQ + G R+P+GF+ R+LPHF + + P
Sbjct: 285 SDLPRSNAPLIMAKCGSKGSLLNLSQMIACVGQQTVGGSRIPDGFEERTLPHFGRLDRHP 344
Query: 234 ASKGNVK 240
A+KG V+
Sbjct: 345 AAKGFVR 351
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 39/124 (31%), Positives = 63/124 (50%), Gaps = 28/124 (22%)
Query: 235 SKGNVKFLRYGNRLKIASE--LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSV 292
+K N+ R G+ L A++ L A+L +S R L +Q R L++
Sbjct: 20 TKSNICTPRNGDPLIAATQDFLTGAFL-------LSLRDTLFTRQ-------RFCQLATY 65
Query: 293 LSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILK----PNRDCPVN--ANLKTKG 346
L+ E T V +PPP I+KP +W+GKQ+ SL+L+ P + P N NL+T+
Sbjct: 66 LT------EGRTFVKLPPPCIVKPVQMWSGKQLLSLLLRPVVAPGQPLPRNNCINLETQT 119
Query: 347 RAYT 350
++Y+
Sbjct: 120 KSYS 123
>gi|330791878|ref|XP_003284018.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
gi|325086064|gb|EGC39460.1| RNA polymerase III, largest subunit [Dictyostelium purpureum]
Length = 1396
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 87/112 (77%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQ CA++INS+ G+PL M+P RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 295 IMEDWDYLQATCAIYINSDVPGLPLQMKPTKPVRGLSQRLKGKTGRFRGNLSGKRVDFSG 354
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ +A +TYPERV N E L++ V+NGPD+HPG
Sbjct: 355 RTVISPDPNLNIDEVAVPQLIALTMTYPERVSDYNIERLQKYVINGPDRHPG 406
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/134 (49%), Positives = 86/134 (64%), Gaps = 2/134 (1%)
Query: 108 PDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
PD P L + K ++ YSKC+ +++ E+G L GCS E+T EA + + LS IR
Sbjct: 685 PDVQPAPDLDQRKRDIIETAYSKCDQFLKDFENGNLPVASGCSMEQTFEAKMNQTLSQIR 744
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D GK C+ +L N PL+M L GSKGS INI+QMI CVGQQ +NG R+PNGF NR+ PH
Sbjct: 745 DDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPH 804
Query: 226 FDKFSKDPASKGNV 239
F F K+ +KG V
Sbjct: 805 FLHFQKNAKAKGFV 818
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVK 358
F + + +PPPAI+KP LWTGKQIF ++L+P+ V +TK R Y+ + K
Sbjct: 559 FADANEHIDLPPPAILKPIELWTGKQIFEVLLRPSVKSHVLCTFETKSRTYSKNLYMCPK 618
Query: 359 D---QFRERNTAC 368
D FR C
Sbjct: 619 DGYVYFRNSELMC 631
>gi|281204162|gb|EFA78358.1| RNA polymerase III [Polysphondylium pallidum PN500]
Length = 1393
Score = 158 bits (399), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 86/112 (76%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQ CA++INSE G+PL M+P+ RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 301 IMEDWDYLQASCAIYINSELPGLPLQMKPQKPIRGLSQRLKGKTGRFRGNLSGKRVDFSG 360
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P +A +TYPERV N L++ V+NGPDKHPG
Sbjct: 361 RTVISPDPNLNIDEVAVPHLIALTMTYPERVAEYNLTRLQKYVINGPDKHPG 412
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 108 PDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
PD P L K+ +++ G+ KC+ ++ A ++G+L Q GC+ E+TLE+ + LS IR
Sbjct: 691 PDVKPSFELNAKKDAIIAVGHGKCDQFLTAYKAGKLPAQSGCTVEQTLESKMNSVLSDIR 750
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D GK C++EL N PL+MAL GSKGS INI+QMIACVGQQ +NG R+PNGF NR+ PH
Sbjct: 751 DECGKLCIKELPHYNSPLIMALCGSKGSNINIAQMIACVGQQTVNGTRIPNGFTNRTTPH 810
Query: 226 FDKFSKDPASKGNV 239
F +K+P +KG V
Sbjct: 811 FPINAKEPPAKGFV 824
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 9/89 (10%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
R+R ++ + F + + +PPP I+KP LWTGKQ+F ++L+P+ V N
Sbjct: 555 RTRFAYMCT------HFADAYEHIDMPPPTILKPIELWTGKQLFEVLLRPSVKSHVLVNF 608
Query: 343 KTKGRAYTFKFSIMVKD---QFRERNTAC 368
+TK R Y + KD FR C
Sbjct: 609 ETKSRTYEKNLYMCPKDGYVYFRNSELMC 637
>gi|290999395|ref|XP_002682265.1| predicted protein [Naegleria gruberi]
gi|284095892|gb|EFC49521.1| predicted protein [Naegleria gruberi]
Length = 1426
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 93/126 (73%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K+ +LSEGY+ C+ YI+ + G+L+ QPGC+ E+TLEA + +ELS IR AG CL
Sbjct: 719 LTEKKKMILSEGYAVCDEYIKLYKDGKLEPQPGCNMEQTLEAKLNRELSEIRGRAGSMCL 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELH N PL M++ GSKGS INISQMIACVGQQ + G R+ NGF NR+LPHF F++DP
Sbjct: 779 DELHWLNAPLTMSVCGSKGSVINISQMIACVGQQTVGGTRIANGFMNRTLPHFPMFARDP 838
Query: 234 ASKGNV 239
A+KG V
Sbjct: 839 AAKGFV 844
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 84/110 (76%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W+ LQL AL+INS+T IP + K S+ L QRLKGK GRFRGNLSGKR +FT RT
Sbjct: 322 EKWDTLQLETALYINSDTRNIPSFVTKKKVSKTLCQRLKGKHGRFRGNLSGKRANFTGRT 381
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QV IPE VAK+LTYPE V+ NK+ L+ L+LNGP+ HPG
Sbjct: 382 VISPDPNLEINQVAIPELVAKVLTYPEVVNRTNKKLLQSLILNGPEVHPG 431
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 33/48 (68%)
Query: 302 HETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + +PPP I+KP LWTGKQ+FSL++KPN + V N +TK + Y
Sbjct: 588 EDKKIDLPPPTILKPIELWTGKQLFSLLVKPNNNTNVFVNFETKAKNY 635
>gi|432115681|gb|ELK36916.1| DNA-directed RNA polymerase III subunit RPC1 [Myotis davidii]
Length = 413
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 81/92 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERV 92
RTVISPDPNL+I +V +P HVAKILT+PE+V
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKV 396
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|452825408|gb|EME32405.1| DNA-directed RNA polymerase subunit [Galdieria sulphuraria]
Length = 1423
Score = 155 bits (391), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 86/113 (76%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++ +DWE LQL CA +IN++ G+P + RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 315 LVMDDWELLQLECARYINADLPGLPPSATSGKTIRGLCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SRTVISPDPNL I QVG+P +VAK LT+PERV N + L + VLNGPD HPG
Sbjct: 375 SRTVISPDPNLSIEQVGVPVYVAKQLTFPERVTKYNIKQLSKAVLNGPDIHPG 427
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%), Gaps = 3/126 (2%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K+ LL GY C+ I A +S L+ +PGC+ E+TLE I LS IR+ AGK C+ +
Sbjct: 733 KDELLRAGYKDCDDLIEAFQSRTLEARPGCTVEQTLEVSINAVLSKIREDAGKVCIAAID 792
Query: 178 PS-NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK--FSKDPA 234
P N + MAL GSKGS INISQMI+CVGQQ +NG RVP+GF R+LPHF ++ P
Sbjct: 793 PKVNSAMAMALCGSKGSNINISQMISCVGQQTVNGCRVPDGFLGRALPHFASGMSARTPW 852
Query: 235 SKGNVK 240
+KG VK
Sbjct: 853 AKGFVK 858
>gi|356541271|ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Glycine max]
Length = 1391
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 84/110 (76%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ LQ A FINS+ GIP MQP + G +QRLKGK GRFRGNLSGKRV++T RT
Sbjct: 306 DGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKRVEYTGRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V IP H+A+ILTYPERV H N E L+Q V NGPDK+PG
Sbjct: 366 VISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPG 415
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 89/126 (70%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K+ +SEGY +C+ +I A G+L+ GC A +TLE I L+ +RD AGK C+
Sbjct: 712 LINKKDETISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCM 771
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R PNGF +RSLPHF + SK P
Sbjct: 772 QTLHWRNSPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTP 831
Query: 234 ASKGNV 239
A+KG V
Sbjct: 832 AAKGFV 837
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 31/43 (72%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+P PAI+KP LW+GKQ+FS+IL+P+ + V NL K R YT
Sbjct: 577 LPTPAIVKPVELWSGKQLFSIILRPHANMRVYVNLTVKERNYT 619
>gi|302673160|ref|XP_003026267.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
gi|300099948|gb|EFI91364.1| hypothetical protein SCHCODRAFT_71335 [Schizophyllum commune H4-8]
Length = 1402
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 87/111 (78%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E WE+LQL A++INSE G+P QP + RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 302 EQWEFLQLSVAMYINSELPGVP--SQPGQRPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAKILTYPERV N E L++ VLNGPD HPG
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTVHNMEGLRKAVLNGPDVHPG 410
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 89/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L KE L+ + Y++C I + G L+ +PGC E+TLEA I LS +R+ AG+
Sbjct: 706 PELTEKKEDLIEKAYAECLDKIALAKKGGLKNKPGCDQEQTLEAEISSILSNVREKAGQI 765
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA SGSKGS IN+ QM+ACVGQQ I G RVP+GF +RSLPHF K SK
Sbjct: 766 CMRELSRHNAPLIMATSGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSK 825
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 826 EPPSKGFVR 834
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
IPPP I+KP+ LWTGKQIF+++++PNR V N++ K
Sbjct: 571 IPPPTILKPQRLWTGKQIFNVLMRPNRKSKVFVNVECK 608
>gi|169869303|ref|XP_001841218.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
gi|116497686|gb|EAU80581.1| DNA-directed RNA polymerase III largest subunit [Coprinopsis
cinerea okayama7#130]
Length = 1403
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 85/110 (77%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE+LQL A++INSE G+P M K RG +QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWEFLQLSVAMYINSELPGVPSQMGQKP-IRGFVQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N E L+Q + NGPD HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTMHNIETLRQAIRNGPDVHPG 410
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 90/129 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ L+ + Y+ CE I + G+L+ +PGC+ E+TLEA+I LS +R+ G+
Sbjct: 706 PVLSSQKDVLVEKAYADCEDLIALAKKGKLENKPGCNQEQTLEAMISSVLSKVREEVGQI 765
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 766 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSK 825
Query: 232 DPASKGNVK 240
P SKG V+
Sbjct: 826 TPPSKGFVR 834
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 34/49 (69%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + + IPPP I KP LWTGKQIF+++++PN+ + N+++K + +
Sbjct: 564 DADLHIDIPPPTIWKPVQLWTGKQIFNVLMRPNKQSKIFINVESKCQKW 612
>gi|298709808|emb|CBJ31607.1| RNA polymerase III, largest subunit [Ectocarpus siliculosus]
Length = 1518
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI E+W++LQL A +IN E G+P +Q RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 355 MIMENWDFLQLEVAQYINGEMPGLPRPIQTTKPIRGLCQRLKGKSGRFRGNLSGKRVDFS 414
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL++ QVG+PE VAKI+T+PE V N E L+++V NGPD HPG
Sbjct: 415 ARTVISPDPNLRVDQVGVPERVAKIMTFPEMVSRYNIEKLRKVVRNGPDVHPG 467
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K LL++GY++ + IR + R+ +PGC A ++LE+ + L +R+
Sbjct: 751 DVTPGAELSALKHELLTDGYTEADEQIRLFNNNRMPLKPGCDAIQSLESELNGLLGKLRE 810
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG ++ L N P +MA GSKGS +NISQMIACVGQQ++ GKR+ NGF NR+LPHF
Sbjct: 811 TAGTGAMKALPWVNSPRIMAECGSKGSPLNISQMIACVGQQSVGGKRIQNGFVNRTLPHF 870
Query: 227 DKFSKDPASKGNV 239
+ S PA+KG V
Sbjct: 871 EANSLFPAAKGFV 883
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
V IPPPAIMKP ALWTGKQ SL+++P+++ + N ++K + Y
Sbjct: 630 VDIPPPAIMKPVALWTGKQAMSLMVRPSKENKILVNFESKEKNY 673
>gi|348676845|gb|EGZ16662.1| hypothetical protein PHYSODRAFT_500633 [Phytophthora sojae]
Length = 1532
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 87/113 (76%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M+ EDW++LQ+ A +N +T G+ KS RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 315 MVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKSGIRGLCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QVG+PEHVAK +TYPE+V N E L++ V+NGP+ HPG
Sbjct: 375 GRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPNVHPG 427
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE+LL GY I G+L +PGC+A ++LE+ + L +R+ AG C+
Sbjct: 716 LAKEKEKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECM 775
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N P +MA GSKGS +NISQM+ACVGQQ++ GKRVP GF NR+LPHF +
Sbjct: 776 RTLPFHNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHA 835
Query: 234 ASKGNV 239
++KG V
Sbjct: 836 SAKGFV 841
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ---FRER 364
+P PAI+ P LWTGKQ+ SL++KPN V ANL+ K R YT + KD FR
Sbjct: 590 LPLPAIVLPVRLWTGKQVISLLVKPNSQTKVMANLELKERNYTNNKYMCWKDGYVCFRNS 649
Query: 365 NTAC 368
C
Sbjct: 650 ELIC 653
>gi|407043155|gb|EKE41776.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba nuttalli P19]
Length = 1379
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 94/127 (74%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+SEGY KC+ +I +SG+ + Q G + E+TLEA++ ELS IR+ AGK C+
Sbjct: 722 LTQMKEELVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSQIRERAGKRCI 781
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PLVMALSGSKGS INISQMIACVGQQ +NG RV +GF +RSLPHF S+ P
Sbjct: 782 EELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTP 841
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 842 QAKGFVK 848
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ L + ++FINSE G +P R + QRLKGK GRFRGNL GKRVDF+ RT
Sbjct: 325 DSWDQLTVAVSMFINSELPGCDDKGKP---LRAICQRLKGKHGRFRGNLLGKRVDFSGRT 381
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I Q+G+P+ +A LTYPERV N + L+QLV+NG + +PG
Sbjct: 382 VISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPG 431
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F T + +P PA +KPK LWTGKQ++ L LKPN+ VN +L + Y+
Sbjct: 587 FHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALKPNKHEGVNISLDVPSKLYS 638
>gi|167385199|ref|XP_001737245.1| DNA-directed RNA polymerase III subunit RPC1 [Entamoeba dispar
SAW760]
gi|165900031|gb|EDR26493.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
dispar SAW760]
Length = 1379
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 94/127 (74%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+SEGY KC+ +I +SG+ + Q G + E+TLEA++ ELS IR+ AGK C+
Sbjct: 722 LTQMKEELVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSEIRERAGKRCI 781
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PLVMALSGSKGS INISQMIACVGQQ +NG RV +GF +RSLPHF S+ P
Sbjct: 782 EELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTP 841
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 842 QAKGFVK 848
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ L + ++FINS+ G +P R + QRLKGK GRFRGNL GKRVDF+ RT
Sbjct: 325 DSWDQLTIAVSMFINSDLPGCDDKGKP---LRSICQRLKGKHGRFRGNLLGKRVDFSGRT 381
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I Q+G+P+ +A LTYPERV N + L+QLV+NG + +PG
Sbjct: 382 VISPDPNLDIEQIGVPKLMAIKLTYPERVTKHNIDKLRQLVINGSNIYPG 431
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F T + +P PA +KPK LWTGKQ++ L LKPN+ VN +L + Y+
Sbjct: 587 FHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALKPNKHEGVNISLDVPSKLYS 638
>gi|67476290|ref|XP_653748.1| DNA-directed RNA polymerase III largest subunit [Entamoeba
histolytica HM-1:IMSS]
gi|56470729|gb|EAL48362.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba histolytica HM-1:IMSS]
gi|449705808|gb|EMD45780.1| DNA-directed RNA polymerase III largest subunit, putative
[Entamoeba histolytica KU27]
Length = 1379
Score = 152 bits (385), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 75/127 (59%), Positives = 94/127 (74%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+SEGY KC+ +I +SG+ + Q G + E+TLEA++ ELS IR+ AGK C+
Sbjct: 722 LTQMKEELVSEGYKKCDQFIEDYKSGKQEVQAGSTPEQTLEALLNNELSQIRERAGKRCI 781
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PLVMALSGSKGS INISQMIACVGQQ +NG RV +GF +RSLPHF S+ P
Sbjct: 782 EELKSDNSPLVMALSGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFALHSRTP 841
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 842 QAKGFVK 848
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ L + ++FINSE G +P R + QRLKGK GRFRGNL GKRVDF+ RT
Sbjct: 325 DSWDQLTVAVSMFINSELPGCDDKGKP---LRAICQRLKGKHGRFRGNLLGKRVDFSGRT 381
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I Q+G+P+ +A LTYPERV N + L+QLV+NG + +PG
Sbjct: 382 VISPDPNLDIEQIGVPKLMAVKLTYPERVTKHNIDKLRQLVINGSNNYPG 431
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F T + +P PA +KPK LWTGKQ++ L LKPN+ VN +L + Y+
Sbjct: 587 FHNAGTEIDLPTPAYLKPKKLWTGKQLYGLALKPNKHEGVNISLDVPSKLYS 638
>gi|440296621|gb|ELP89407.1| DNA-directed RNA polymerase III subunit RPC1, putative [Entamoeba
invadens IP1]
Length = 1381
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 93/127 (73%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L R KE L+ EGY+KC+ +I++ G+ + QPG + E+TLEA++ ELS +R+ AGK C+
Sbjct: 724 LTRMKEELVGEGYAKCDQFIKSYNDGKQEIQPGSTPEQTLEALLNSELSQVRERAGKRCI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PLVMAL GSKGS INISQMIACVGQQ +NG RV +GF +RSLPHF S+ P
Sbjct: 784 DELRCDNSPLVMALCGSKGSVINISQMIACVGQQTVNGGRVSDGFISRSLPHFPLHSRTP 843
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 844 QAKGFVK 850
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/110 (55%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W+ L + +L INS+ +P+ + R L QRLKGK GRFRGNL GKRVDF+ RT
Sbjct: 328 EAWDQLTVAVSLIINSD---LPMCEEKGKPLRSLCQRLKGKHGRFRGNLLGKRVDFSGRT 384
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + Q+G+P+ +A LTYPERV N E ++QLV NGPD +PG
Sbjct: 385 VISPDPNLDVEQLGVPQLMAITLTYPERVTRYNIEKMRQLVRNGPDTYPG 434
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + +P PA +KPK LWTGKQ++ L L+PN + V+ L + Y+
Sbjct: 589 FHNAGVEIRLPTPAYLKPKKLWTGKQLYGLALRPNPNFGVDICLDAPSKNYS 640
>gi|302840215|ref|XP_002951663.1| hypothetical protein VOLCADRAFT_81566 [Volvox carteri f.
nagariensis]
gi|300262911|gb|EFJ47114.1| hypothetical protein VOLCADRAFT_81566 [Volvox carteri f.
nagariensis]
Length = 1365
Score = 152 bits (384), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W++LQ+ CA+ INS+ G+P MQ P RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 246 LMENWDFLQVQCAMLINSDLPGLPAQMQMPGRPLRGFVQRLKGKQGRFRGNLSGKRVDFS 305
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNLQI+QV +P+H+A +LTYPERV N + L+Q VLNG PG
Sbjct: 306 GRTVISPDPNLQIFQVCVPQHMAVVLTYPERVTRHNIDKLRQRVLNGISTWPG 358
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 87/128 (67%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L RAK + +GY+ C +I A + G LQ QPGC+AE++LEA + L+ IR+ AGK
Sbjct: 643 PVLERAKADTVEKGYTDCRDFIAAFKKGELQLQPGCNAEQSLEANMTGVLNNIREVAGKV 702
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ L N PL+M+ GSKGS INI+QM+ACVGQQ++ GKR NGF R+LPH+ + K
Sbjct: 703 CMDTLDYHNSPLIMSQCGSKGSPINIAQMVACVGQQSVGGKRCFNGFRERTLPHYPRGDK 762
Query: 232 DPASKGNV 239
PA KG V
Sbjct: 763 TPAGKGFV 770
Score = 44.7 bits (104), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
+ +P PA++KP LWTGKQ+FS +++P V NL+ + Y+ K
Sbjct: 518 IDLPTPALLKPLELWTGKQLFSCLVRPAAAVRVFVNLEMAEKIYSKK 564
>gi|328766444|gb|EGF76498.1| hypothetical protein BATDEDRAFT_14837 [Batrachochytrium
dendrobatidis JAM81]
Length = 1407
Score = 152 bits (383), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 73/116 (62%), Positives = 89/116 (76%), Gaps = 4/116 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQ---PKSKSRGLIQRLKGKQGRFRGNLSGKRV 57
++ E W++LQL CA++I S+ GIP ++Q PK K +G QRLKGK GRFRGNLSGKRV
Sbjct: 301 LLMEYWDFLQLQCAMYITSDLPGIPTHLQGSLPKIK-KGFCQRLKGKHGRFRGNLSGKRV 359
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DF+ RTVISPDPNL+I QV +PE VAK+LTYPERV N E L+ V+NGPD HPG
Sbjct: 360 DFSGRTVISPDPNLRIDQVAVPERVAKVLTYPERVTPYNIERLRMNVINGPDVHPG 415
Score = 138 bits (347), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + +GY+ C+ I L QPGC+ E+TLE+ + LS IRD
Sbjct: 717 DVQPGDRLRTEKEITVEKGYTDCDETIALSRQNLLPNQPGCNQEQTLESKLSGILSKIRD 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C QEL+ N PL+M+L GSKGS IN+SQM+ACVGQQ I+G R+PNGF +RSLPHF
Sbjct: 777 DVGQVCFQELNKYNAPLIMSLCGSKGSKINVSQMVACVGQQIISGSRIPNGFGDRSLPHF 836
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 837 AKNSKTPPAKGFV 849
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 43/67 (64%), Gaps = 6/67 (8%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS+ + S L SL ++ +PPP I+KP ALWTGKQ+F ++L+P+++ + NL
Sbjct: 559 RSQFSQICSYLGDSL------LNIDLPPPTILKPFALWTGKQVFGVMLRPSQESKIIINL 612
Query: 343 KTKGRAY 349
+TK R +
Sbjct: 613 ETKCRTF 619
>gi|440795837|gb|ELR16951.1| DNAdirected RNA polymerase subunit A [Acanthamoeba castellanii str.
Neff]
Length = 1230
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 89/112 (79%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ L ++ AL+INSET GIP + P +RGL QRLKGK+GRFRGNLSGKRVDF+
Sbjct: 228 IMEKWDALHINVALYINSETPGIPPTIVPAKPTRGLCQRLKGKKGRFRGNLSGKRVDFSG 287
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +PE +AK++TYPERV+ N + +++LVLNG DK PG
Sbjct: 288 RTVISPDPNLRIDEVALPELLAKVMTYPERVNAKNIDKMRKLVLNGTDKWPG 339
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 92/127 (72%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L R K+ L+ Y++C I +SG+LQ QPGC+ E+TLEA + K LS +R+ G AC+
Sbjct: 631 LKREKDELIQTAYAECRTLISEYKSGKLQPQPGCNVEQTLEAQLNKILSDVREACGTACI 690
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP N PL+MAL GSKGS INISQMIACVGQQ ++G RVP GF +R+LPHF ++DP
Sbjct: 691 NELHPLNAPLIMALCGSKGSNINISQMIACVGQQTVSGSRVPEGFIHRTLPHFGVNARDP 750
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 751 EAKGFVK 757
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS 354
F + + + IPPPAI+KP LWTGKQ+F ++L+PN++ V +++ KGR YT K S
Sbjct: 492 FVDADAKIDIPPPAIVKPMELWTGKQLFYILLRPNKNVDVCLSMEVKGREYTGKGS 547
>gi|328874135|gb|EGG22501.1| RNA polymerase III [Dictyostelium fasciculatum]
Length = 1507
Score = 151 bits (382), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 86/112 (76%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ EDW++LQ A++INSE G+PL M+P+ RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 391 VVEDWDYLQASVAIYINSELPGLPLQMKPQKPIRGLSQRLKGKTGRFRGNLSGKRVDFSG 450
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V IP+ +A +TYPER N + L++ ++NGPDKHPG
Sbjct: 451 RTVISPDPNLNIDEVAIPQLIAVTMTYPERCTSFNIQRLQKYIINGPDKHPG 502
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/128 (52%), Positives = 88/128 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ ++ + KC+ ++ +SGRL GC+ E+TLEA + + LS IRD GK
Sbjct: 787 PDLNAKKDAIIKRAHDKCDVFLTEYKSGRLAAASGCTVEQTLEARMNQILSGIRDECGKL 846
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ EL N PL+MAL GSKGS INI+QMIACVGQQ +NG R+PNGF NR+ PHF FS+
Sbjct: 847 CVSELPHYNSPLIMALCGSKGSNINIAQMIACVGQQIVNGTRIPNGFTNRTTPHFPHFSR 906
Query: 232 DPASKGNV 239
+P +KG V
Sbjct: 907 EPKAKGFV 914
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + + +P P I+KP LWTGKQ+F ++L+P+ V N +T R YT
Sbjct: 655 FADAYEHIDLPQPTIVKPIELWTGKQLFEVLLRPSVKSHVLVNFETNSRTYT 706
>gi|358342624|dbj|GAA33483.2| DNA-directed RNA polymerase III subunit RPC1 [Clonorchis sinensis]
Length = 1462
Score = 151 bits (381), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 72/126 (57%), Positives = 93/126 (73%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+++K +++ G+S C+ YI E L+ PGCS E+TLE+ + +ELS IRD AG AC
Sbjct: 787 LVKSKTKVIDVGFSTCDDYIHQYEKNTLKCNPGCSMEDTLESNLSQELSKIRDEAGAACK 846
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
++LHPSN PLVMA SGSKGSF+NISQMIACVGQQ I GKRVP+ + RSL HF + S+ P
Sbjct: 847 RQLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQVIGGKRVPDVINGRSLIHFPRGSRTP 906
Query: 234 ASKGNV 239
+KG V
Sbjct: 907 EAKGFV 912
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 71/157 (45%), Positives = 91/157 (57%), Gaps = 13/157 (8%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPD 68
L A INS+ SG+P +Q RGL+QRL GK GRFRGNL GKR ++T+RTVISPD
Sbjct: 376 LHAEFARMINSQQSGLP-PVQDHKFMRGLLQRLSGKHGRFRGNLLGKRTNYTARTVISPD 434
Query: 69 PNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSK 128
PNL+I +V +P+H AK+LT+P RV N + L+ LVLNGP+++PG L +L E +
Sbjct: 435 PNLRIDEVCVPDHCAKLLTFPARVTTFNLDFLRSLVLNGPNRYPGALFVSYKLRGEQKRQ 494
Query: 129 CEGY------------IRAMESGRLQTQPGCSAEETL 153
E RA E QPG E L
Sbjct: 495 AEATGSSDVVKRFLASARAREDVARHLQPGDVVERHL 531
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/36 (58%), Positives = 27/36 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLK 343
+P PAIMKP+ LWTGKQ+FSLIL P+ V N++
Sbjct: 660 LPKPAIMKPRRLWTGKQLFSLILSPHPSTGVKINIR 695
>gi|342320897|gb|EGU12835.1| DNA-directed RNA polymerase [Rhodotorula glutinis ATCC 204091]
Length = 1804
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 76/112 (67%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W++LQL A +INSE GIP M K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 658 LMEQWDFLQLAVATYINSEMPGIPTAMGQKPM-RGLCQRLKGKQGRFRGNLSGKRVDFSG 716
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QV +PE VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 717 RTVISPDPNLMIDQVAVPERVAKILTYPERVTAHNIERLRQAVRNGTDVHPG 768
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ L+ Y + + YI G+L+ QPG + E+TLE++I +LS +RD
Sbjct: 1059 DVTPGERLKAEKDDLVRRAYGQADEYIEKAARGKLECQPGSNLEQTLESLISGDLSRVRD 1118
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF
Sbjct: 1119 QVGEICMTELSRNNAPLIMATCGSKGSKINVSQMVACVGQQIIAGHRVPNGFQDRSLPHF 1178
Query: 227 DKFSKDPASKGNV 239
K + DP +KG V
Sbjct: 1179 PKGAIDPLAKGFV 1191
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 39/51 (76%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
++ E + +PPP I+KP+ LWTGKQ+F+++++PN+D PVN NL+ K + +
Sbjct: 923 LQDAELEIELPPPTILKPERLWTGKQVFNVLMRPNKDSPVNVNLECKNKTF 973
>gi|301109379|ref|XP_002903770.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
gi|262096773|gb|EEY54825.1| DNA-directed RNA polymerase III largest subunit [Phytophthora
infestans T30-4]
Length = 1534
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/113 (61%), Positives = 86/113 (76%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M+ EDW++LQ+ A +N +T G+ K+ RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 319 MVMEDWDFLQIQVAQLMNGDTPGLVKPPGAKTGIRGLCQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QVG+PEHVAK +TYPE+V N E L++ V+NGP HPG
Sbjct: 379 GRTVISPDPNLRIDQVGVPEHVAKTMTYPEKVTRYNIEKLRKCVVNGPHVHPG 431
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + K++LL GY I G+L +PGC+A ++LE+ + L +R+ AG C+
Sbjct: 720 LSKEKQKLLQAGYDAANNSIEEYRRGKLSLKPGCNAIQSLESELNGLLGKLRETAGAECM 779
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N P +MA GSKGS +NISQM+ACVGQQ++ GKRVP GF NR+LPHF +
Sbjct: 780 RTLPFHNNPRIMAECGSKGSALNISQMMACVGQQSVGGKRVPEGFVNRTLPHFLPHALHA 839
Query: 234 ASKGNV 239
++KG V
Sbjct: 840 SAKGFV 845
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ---FRER 364
+PPPAI+ P LWTGKQ+ SL++KPN V ANL+ K R YT + KD FR
Sbjct: 594 LPPPAIVLPVRLWTGKQVISLLVKPNAQTKVLANLELKERNYTSNKFMCWKDGYVCFRNS 653
Query: 365 NTAC 368
C
Sbjct: 654 ELIC 657
>gi|388580014|gb|EIM20332.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1409
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE LQL CA++IN+E G+P + K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 301 LMEQWELLQLACAMYINAEMPGVPSDKATKP-IRGFVQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVI PDPNL + +V +P+ +AK+LTYPERV N E L+Q V NGPD HPG
Sbjct: 360 RTVIGPDPNLSVNEVAVPQRIAKVLTYPERVFEHNIESLRQAVRNGPDVHPG 411
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 91/127 (71%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ E Y+ C I + G+L+ QPGC E+TLE++I LS +RD G +C+
Sbjct: 705 LRKRKEVLVEEAYAHCNDLIEKAKYGKLENQPGCDQEQTLESLISGILSKVRDVVGASCM 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS IN+SQM+ACVGQQ I+GKRVPNGF +RSLPHF K +KDP
Sbjct: 765 EELSRYNAPLIMATCGSKGSVINVSQMVACVGQQIISGKRVPNGFQDRSLPHFPKKAKDP 824
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 825 PSKGFVR 831
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 293 LSSSLRFREHETSVI-IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
S + + +H I +PPPAI+KPK +WTGKQI S++++PN+ PV NL+ K R
Sbjct: 559 FSQVVSYLDHANMHIDLPPPAILKPKRMWTGKQILSILMRPNKSSPVLVNLEAKNRT 615
>gi|313241408|emb|CBY33677.1| unnamed protein product [Oikopleura dioica]
Length = 1360
Score = 150 bits (380), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 72/127 (56%), Positives = 94/127 (74%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K +++ E Y K + +I A + +L+ QPGC+A+ETLE ++ KELS IRD A KAC
Sbjct: 638 LLDKKMKVIGEQYRKVDEHILAKKHNKLKLQPGCTADETLENIVQKELSKIRDDAAKACF 697
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL MAL GSKGS INI+QM+ACVGQQ ++G R+PNGF+ RSLPHF++ SKDP
Sbjct: 698 AELSKFNTPLNMALCGSKGSNINIAQMVACVGQQVLSGSRIPNGFEARSLPHFERDSKDP 757
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 758 KSRGFVQ 764
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 80/126 (63%), Gaps = 13/126 (10%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQP------KSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
W+ LQ AL INS G+ LN P + + L+QRLKGKQGRFR NL GKRV+F
Sbjct: 261 WDVLQSLHALMINS---GVNLNAFPSQFRIKDTPRQSLVQRLKGKQGRFRQNLQGKRVNF 317
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
T+R+VISPDPNL+I QVGIP VAK LT+ E+V N +K LV NG + +PG A E
Sbjct: 318 TARSVISPDPNLRIDQVGIPIDVAKKLTFAEQVTRYNINQMKTLVKNGGE-YPG---ANE 373
Query: 120 RLLSEG 125
L G
Sbjct: 374 ILYKNG 379
>gi|170106087|ref|XP_001884255.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640601|gb|EDR04865.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1397
Score = 150 bits (380), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 85/111 (76%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E WE+LQL A++INSE G+P QP K RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 302 EQWEFLQLSVAMYINSELPGVP--SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAKILTYPERV N L+Q + NGPD HPG
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTTHNINALRQAIRNGPDVHPG 410
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L R K+ L+ + Y+ C+ I + G+L+ +PGC E+TLEA+I LS +R+ G+
Sbjct: 701 PELSRQKDILVEKAYADCQDLIALAKKGKLENKPGCDQEQTLEALISSVLSKVREAVGQI 760
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 761 CMKELSRQNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSK 820
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 821 EPPSKGFVR 829
Score = 52.0 bits (123), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPP I KP LWTGKQIF+++++PN+ + N+++K
Sbjct: 562 FADADMQIDIPPPTIWKPVRLWTGKQIFNVLIRPNKKSNILVNVESK 608
>gi|219121691|ref|XP_002181195.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407181|gb|EEC47118.1| rna polymerase C 157 kDa [Phaeodactylum tricornutum CCAP 1055/1]
Length = 1281
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 75/122 (61%), Positives = 92/122 (75%), Gaps = 7/122 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGI--PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E+W++LQ+ A +IN E G+ P+ +P RGL QRLKGKQGRFRGNLSGKRVDF
Sbjct: 266 IMEEWDFLQVQVAQYINGEMPGLQRPIGSKPM---RGLCQRLKGKQGRFRGNLSGKRVDF 322
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG--LLRA 117
++RTVISPDPNL++ QVG+PE VAK +TYPERV N E L+Q V NGPD HPG L+R
Sbjct: 323 SARTVISPDPNLRVDQVGVPERVAKTMTYPERVSRYNIEKLRQRVRNGPDVHPGANLIRM 382
Query: 118 KE 119
K+
Sbjct: 383 KD 384
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/122 (48%), Positives = 82/122 (67%), Gaps = 1/122 (0%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K +LSEGY K E I M+ GRL+ +PGC ++LE ++ L +R+ AG+ ++ L
Sbjct: 669 KHGILSEGYKK-ERLITPMKQGRLELRPGCDLLQSLEEILNGILGRLRESAGQEAMKALP 727
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N P +MA GSKGS +NISQMI+CVGQQA+ G R+ +GF NR LPHF+ S P++KG
Sbjct: 728 WTNTPRIMAECGSKGSPLNISQMISCVGQQAVGGMRIQDGFVNRCLPHFEYHSLIPSAKG 787
Query: 238 NV 239
V
Sbjct: 788 FV 789
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ + + IP P I++P LWTGKQ+F ++L+PNR V + + K + YT
Sbjct: 530 YSDASEDIDIPFPTILRPVELWTGKQVFGMMLRPNRKSSVLVSFENKEKNYT 581
>gi|19112298|ref|NP_595506.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe 972h-]
gi|9297042|sp|O94666.1|RPC1_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit rpc1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RPC158
gi|4467280|emb|CAB37604.1| DNA-directed RNA polymerase III complex large subunit Rpc1
(predicted) [Schizosaccharomyces pombe]
gi|76782169|gb|ABA54855.1| RNA polymerase III largest subunit Rpc1 [Schizosaccharomyces pombe]
Length = 1405
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE++QL A++INSE G+ + P RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P +AKILT+PERV NK+HL+ + NGPD HPG
Sbjct: 360 RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+++ Y+ + +I G L+ QPG E TLEA I LS +RD
Sbjct: 696 DVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRD 755
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL P+N PL+MA GSKGS IN+SQM+ACVGQQ I+GKRVP+GF +RSLPHF
Sbjct: 756 DVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHF 815
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 816 HKNSKHPLAKGFV 828
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
T + +PPPAI+KP+ LWTGKQ+F++++KPNR V NL K R+++
Sbjct: 570 THIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFS 616
>gi|225435153|ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
vinifera]
Length = 1383
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 84/108 (77%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W++LQ+ A +INS+ G+PL MQ G +QRLKGKQGRFRGNLSGKRV++T RTVI
Sbjct: 309 WDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 368
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +AKIL+YPERV H N E L+Q +LNGP K+PG
Sbjct: 369 SPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPG 416
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K + + EGY C I+ G+L+ QPGC+A +TLEA I L+ IR+
Sbjct: 699 DVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRE 758
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
C++ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R P+GF +R+LPHF
Sbjct: 759 TTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHF 818
Query: 227 DKFSKDPASKGNV 239
+ SK P +KG V
Sbjct: 819 PRKSKTPDAKGFV 831
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
V +P PAI+KP LWTGKQ+F+++L+P+ + V NL + Y
Sbjct: 576 VDLPTPAIIKPVELWTGKQLFNVLLRPHANVRVYLNLTVMEKTY 619
>gi|222639936|gb|EEE68068.1| hypothetical protein OsJ_26081 [Oryza sativa Japonica Group]
Length = 1526
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 96/246 (39%), Positives = 132/246 (53%), Gaps = 37/246 (15%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A + ++E G P Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 284 IITEFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 343
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPN+ I ++G+P +LV GP PG AK
Sbjct: 344 SARTVITPDPNINIDELGVP---------------------WKLVEYGPHPPPGKTGAKY 382
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+ +G Y++ S+++ LE + K L+ RD AG + + L S
Sbjct: 383 IIREDGQRLDLRYVKK------------SSDQHLE-LGYKVLNKARDDAGSSAQKSLSES 429
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +GSKGSFINISQM ACVGQQ + GKR+P GF +R+LPHF K P S+G V
Sbjct: 430 NNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFV 489
Query: 240 K--FLR 243
+ +LR
Sbjct: 490 ENSYLR 495
>gi|45935343|gb|AAS79693.1| RNA polymerase III large subunit [Podocarpus macrophyllus]
Length = 546
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC+ +I G+L QPGC+A +TLE+ I EL+ IR+
Sbjct: 195 DVQPGTRLSAKKEEQIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLESEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+L GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 VAGSICLRELHWRNSPLIMSLCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 47.8 bits (112), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LWTGKQ+FS++++PN V NL + Y+
Sbjct: 74 IDLPTPAILKPIELWTGKQLFSVLVRPNTKMRVFVNLIVMEKNYS 118
>gi|45935351|gb|AAS79697.1| RNA polymerase III large subunit [Ginkgo biloba]
Length = 548
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE+ + EGYSKC+ +I G+L QPGC+A +TLEA I EL+ IR+
Sbjct: 195 DVQPGSRLSAKKEQRIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 VAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LWTGKQ+FS++++PN + V NL + Y+
Sbjct: 74 IDLPTPAILKPMELWTGKQLFSVLVRPNANMRVFVNLILTEKNYS 118
>gi|343427900|emb|CBQ71425.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1400
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 85/111 (76%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
+ WE+LQL AL+INSE G+P+ QP K SRG QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 307 QQWEFLQLTVALYINSELPGVPV--QPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSGR 364
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVI PDPNL+I +V +P+ VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 365 TVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPG 415
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ + Y++C I + G+L+ PGC E+TLE +I LS +R G+
Sbjct: 707 PNLRDNKDAKVEAAYTECLDLIEKAKHGKLENLPGCDQEQTLENMISGVLSGVRSDVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ EL N PLVMA+ GSKGS IN++QM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 767 CMTELSRHNAPLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSK 826
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 827 DPPSKGFVR 835
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + + +PPPAIMKP LWTGKQ+ S +++PNR P NL+ + R +
Sbjct: 570 FADADLQIDLPPPAIMKPVRLWTGKQVMSCLIRPNRKSPHLVNLEAQCRTF 620
>gi|409075371|gb|EKM75752.1| hypothetical protein AGABI1DRAFT_79519 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1402
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E W++LQL A+++NSE G+P QP K RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 302 EQWDFLQLSVAMYVNSELPGVP--SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAKILTYPERV N E L++ V NGPD HPG
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPG 410
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L KE L+ + Y+ C+ I + G+L+ +PGC+ E+TLEA+I LS +R+ G+
Sbjct: 706 PQLKARKESLVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQI 765
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 766 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSK 825
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 826 EPPSKGFVR 834
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + IPPP I KP LWTGKQ+F+++++PN+ V N++ K
Sbjct: 562 FGDANMQIDIPPPTIWKPARLWTGKQVFNVLMRPNKISEVLVNVECK 608
>gi|426198021|gb|EKV47947.1| hypothetical protein AGABI2DRAFT_202225 [Agaricus bisporus var.
bisporus H97]
Length = 1402
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/111 (65%), Positives = 86/111 (77%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E W++LQL A+++NSE G+P QP K RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 302 EQWDFLQLSVAMYVNSELPGVP--SQPGQKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAKILTYPERV N E L++ V NGPD HPG
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKILTYPERVTPHNIEMLRKAVRNGPDVHPG 410
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 91/129 (70%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L KE L+ + Y+ C+ I + G+L+ +PGC+ E+TLEA+I LS +R+ G+
Sbjct: 706 PQLKARKESLVEKAYADCQDLIALAKKGKLENKPGCNQEQTLEALISSVLSKVREAVGQI 765
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 766 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSK 825
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 826 EPPSKGFVR 834
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + IPPP I KP LWTGKQ+F+++++PN++ V N++ K
Sbjct: 562 FGDANMQIDIPPPTIWKPARLWTGKQVFNVLMRPNKNSEVLVNVECK 608
>gi|297746170|emb|CBI16226.3| unnamed protein product [Vitis vinifera]
Length = 1819
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/108 (62%), Positives = 84/108 (77%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W++LQ+ A +INS+ G+PL MQ G +QRLKGKQGRFRGNLSGKRV++T RTVI
Sbjct: 309 WDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVEYTGRTVI 368
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +AKIL+YPERV H N E L+Q +LNGP K+PG
Sbjct: 369 SPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPG 416
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K + + EGY C I+ G+L+ QPGC+A +TLEA I L+ IR+
Sbjct: 699 DVQPGGLLNDQKSKRIEEGYENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRE 758
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
C++ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R P+GF +R+LPHF
Sbjct: 759 TTANVCMEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHF 818
Query: 227 DKFSKDPASKGNV 239
+ SK P +KG V
Sbjct: 819 PRKSKTPDAKGFV 831
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
V +P PAI+K LWTGKQ+F+++L+P+ + V NL + Y
Sbjct: 576 VDLPTPAIIKAMELWTGKQLFNVLLRPHANVRVYLNLTVMEKTY 619
>gi|396081638|gb|AFN83253.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon romaleae
SJ-2008]
Length = 1315
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 86/113 (76%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE + + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 283 LINEDWDHLQLQCALLINSELPQVGIPGQP---VRGIVQRLKGKNGRFRCNLSGKRVDFS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT E+V NKE L+ LVLNGP+K+PG
Sbjct: 340 GRTVISPDPNLSIEEVGIPERMAKILTISEKVTRFNKEKLQSLVLNGPEKYPG 392
Score = 108 bits (271), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/133 (45%), Positives = 79/133 (59%), Gaps = 8/133 (6%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ +GYS+CE I ++ S EE LE I L+ IR+
Sbjct: 672 DVQPGPILRKKKEMVVGKGYSECESKILEY------SKKSESNEEVLEMEISSILNRIRE 725
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P M GSKGS IN+SQM+ACVGQQ ++G R+PNG D+R LPHF
Sbjct: 726 ECGSICIKELSIRNSPNTMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDDRCLPHF 785
Query: 227 DKFSKDPASKGNV 239
+ + P SKG V
Sbjct: 786 PRGCRTPESKGFV 798
>gi|45935349|gb|AAS79696.1| RNA polymerase III large subunit [Zamia muricata]
Length = 548
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC+ +I G+L QPGC+A +TLEA I EL+ IR+
Sbjct: 195 DVQPGTRLSAKKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 VAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P P I+KP LWTGKQ+FS++++PN + V NL + Y+
Sbjct: 74 IDLPTPTILKPMELWTGKQLFSVLVRPNANVRVFVNLMLTEKNYS 118
>gi|45935337|gb|AAS79690.1| RNA polymerase III large subunit [Ephedra viridis]
Length = 548
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/133 (56%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE ++EGY+KC+ +I G+L QPGC+A +TLEA I EL+ IR+
Sbjct: 195 DVQPGARLTAKKEERVTEGYNKCDKHIDLYNKGKLNLQPGCNAAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 LAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKKPAAKGFV 327
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LW GKQ+FS++++PN V N + Y+
Sbjct: 74 IDLPSPAILKPIELWIGKQLFSVLVRPNAKMRVFVNFIVMEKNYS 118
>gi|336373147|gb|EGO01485.1| hypothetical protein SERLA73DRAFT_103293 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1400
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 85/111 (76%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E WE+LQL A++INSE G+P QP K RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 299 EHWEFLQLSVAMYINSELPGVP--SQPGQKPMRGFVQRLKGKQGRFRGNLSGKRVDFSGR 356
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAK+LTYPERV N E LKQ V NG D HPG
Sbjct: 357 TVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEGLKQAVRNGCDVHPG 407
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 90/129 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ L+ + Y+ C I + G+L+ +PGC+ E+TLEA+I LS +RD G+
Sbjct: 704 PILAAKKDELVEKAYADCLDLIAQAKKGKLENKPGCNQEQTLEALISSVLSKVRDAVGEI 763
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K SK
Sbjct: 764 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSK 823
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 824 EPPSKGFVR 832
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPPAI KP LWTGKQIF+++++PN+D V N+++K
Sbjct: 561 FADADMQIDIPPPAIWKPVRLWTGKQIFNVLMRPNKDSKVFVNVESK 607
>gi|412989108|emb|CCO15699.1| DNA-directed RNA polymerase III largest subunit [Bathycoccus
prasinos]
Length = 1499
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 74/128 (57%), Positives = 89/128 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L R K+ + GY+KC+ I + E G L QPGC+AE+TLEA +L LS +R+ AG A
Sbjct: 727 PELEREKQNRVDSGYAKCDERIASFEKGTLDLQPGCNAEQTLEAEVLGVLSAVREAAGNA 786
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
CL L N PLVMAL GSKGS INISQM+ACVGQQA+ G R P+GF RSLPHF + K
Sbjct: 787 CLDALPKLNSPLVMALCGSKGSTINISQMMACVGQQAVGGTRPPDGFFERSLPHFKRGEK 846
Query: 232 DPASKGNV 239
PA+KG V
Sbjct: 847 TPAAKGFV 854
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+WE+LQ+ A++INSE GI Q P RG +QRLKGKQGRFRGNLSGKRVDFT
Sbjct: 326 MMENWEFLQIQFAMYINSELPGISSQYQSPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFT 385
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL+I +VG+P+H+A LTYPE V++ N L+QL++NG K PG
Sbjct: 386 ARTVISPDPNLRIDEVGLPQHIAMQLTYPETVNNNNIAELRQLIINGEGKWPG 438
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS+ G L++ +S +L S+ +P PAI+KP +WTGKQIFS++++P + NL
Sbjct: 584 RSQFGQLAAYMSDALE------SIDLPSPAIVKPIEMWTGKQIFSVLIRPRMRDQIFVNL 637
Query: 343 KTKGRAYT 350
+ +AYT
Sbjct: 638 EVSEKAYT 645
>gi|401826841|ref|XP_003887513.1| DNA-directed RNA polymerase subunit beta [Encephalitozoon hellem
ATCC 50504]
gi|392998519|gb|AFM98532.1| DNA-directed RNA polymerase subunit beta' [Encephalitozoon hellem
ATCC 50504]
Length = 1314
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 86/113 (76%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE + + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 282 LINEDWDHLQLQCALLINSELPQVGIPGQP---VRGIVQRLKGKNGRFRCNLSGKRVDFS 338
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT ERV NK+ L+ LVLNGP+K+PG
Sbjct: 339 GRTVISPDPNLSIEEVGIPERMAKILTISERVTSFNKKKLQSLVLNGPEKYPG 391
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 83/133 (62%), Gaps = 8/133 (6%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++++GYS+C+ I S RL+ S EE LE I L+ IR+
Sbjct: 671 DVQPGPILRQKKEMVVNKGYSECKNKILE-HSKRLE-----SNEEVLEMEISSILNRIRE 724
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P M GSKGS IN+SQM+ACVGQQ ++G R+PNG D+R LPHF
Sbjct: 725 ECGSICIKELSIRNSPNTMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDDRCLPHF 784
Query: 227 DKFSKDPASKGNV 239
K SK P SKG V
Sbjct: 785 RKGSKTPESKGFV 797
>gi|336386001|gb|EGO27147.1| hypothetical protein SERLADRAFT_446372 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1403
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 75/111 (67%), Positives = 85/111 (76%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E WE+LQL A++INSE G+P QP K RG +QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 302 EHWEFLQLSVAMYINSELPGVP--SQPGQKPMRGFVQRLKGKQGRFRGNLSGKRVDFSGR 359
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPNL+I +V +PE VAK+LTYPERV N E LKQ V NG D HPG
Sbjct: 360 TVISPDPNLRIDEVAVPERVAKVLTYPERVTPHNIEGLKQAVRNGCDVHPG 410
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 90/129 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ L+ + Y+ C I + G+L+ +PGC+ E+TLEA+I LS +RD G+
Sbjct: 707 PILAAKKDELVEKAYADCLDLIAQAKKGKLENKPGCNQEQTLEALISSVLSKVRDAVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K SK
Sbjct: 767 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSK 826
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 827 EPPSKGFVR 835
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPPAI KP LWTGKQIF+++++PN+D V N+++K
Sbjct: 564 FADADMQIDIPPPAIWKPVRLWTGKQIFNVLMRPNKDSKVFVNVESK 610
>gi|71024147|ref|XP_762303.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
gi|46101808|gb|EAK87041.1| hypothetical protein UM06156.1 [Ustilago maydis 521]
Length = 1400
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
+ WE+LQL AL+INSE G+P QP K SRG QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 307 QQWEFLQLTVALYINSELPGVP--TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSGR 364
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVI PDPNL+I +V +P+ VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 365 TVIGPDPNLKIDEVAVPQRVAKILTYPERVFQHNIEQLRQAVRNGTDIHPG 415
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ + Y++C I + G+L+ PGC E+TLE +I LS +R G+
Sbjct: 707 PKLRMNKDAKVEAAYAECLDLIEKAKYGKLENLPGCDQEQTLENMISGVLSGVRSDVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ EL N PLVMA+ GSKGS IN++QM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 767 CMTELSRHNAPLVMAVCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFAKKSK 826
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 827 DPPSKGFVR 835
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + + IPPPAIMKP LWTGKQ+ S +++PNR P NL+ + R +
Sbjct: 570 FSDADLHIDIPPPAIMKPVRLWTGKQVMSCLIRPNRKSPHLVNLEAQCRTF 620
>gi|390600773|gb|EIN10167.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1405
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/110 (67%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE+LQL A++INSE G+P M K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWEFLQLSVAMYINSELPGVPSQMGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTAHNIEKLRQAVRNGCDIHPG 410
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/137 (49%), Positives = 91/137 (66%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K++L+ + Y+ C I + G L+ + GC+ E+TLEA+I LS +RD G+
Sbjct: 708 PVLFSKKDQLVEKAYAACLDLIARAKKGLLENKAGCNQEQTLEAMISSVLSKVRDEVGEI 767
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
CL+EL N PL+MA GSKGS IN++QM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 768 CLKELSRYNAPLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 827
Query: 232 DPASKGNVKFLRYGNRL 248
+P SKG V+ Y L
Sbjct: 828 EPPSKGFVRNSFYSGLL 844
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + IPPP I KP+ LWTGKQ+F+++++PN+ + N+++K
Sbjct: 564 FADANLHIDIPPPTIWKPQRLWTGKQVFNVLMRPNKKSNILVNVESK 610
>gi|443899688|dbj|GAC77017.1| RNA polymerase III, large subunit [Pseudozyma antarctica T-34]
Length = 1400
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
+ WE+LQL AL+INSE G+P QP K SRG QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 307 QQWEFLQLTVALYINSELPGVP--TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSGR 364
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVI PDPNL+I +V +P+ VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 365 TVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPG 415
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 85/129 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K+ + Y++C I + G+L+ PGC E+TLE +I LS +R G+
Sbjct: 707 PNLRKNKDAKVEAAYAECLDLIEKAKRGKLENLPGCDQEQTLENMISGVLSGVRSDVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ EL N PLVMA GSKGS IN++QM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 767 CMTELSRHNAPLVMAFCGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSK 826
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 827 DPLSKGFVR 835
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + IPPPAIMKP LWTGKQ+ S +++PN P NL+ + R +
Sbjct: 570 FADANLHIDIPPPAIMKPVRLWTGKQVMSCLIRPNSKSPHIVNLEAQCRTF 620
>gi|45935347|gb|AAS79695.1| RNA polymerase III large subunit [Cycas revoluta]
Length = 548
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC+ +I G+L QPGC+A +TLEA I EL+ IR+
Sbjct: 195 DVQPGTRLSAQKEERIKEGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 IAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P P I+KP LWTGKQ+FS++++PN + V NL + Y+
Sbjct: 74 IDLPTPTILKPIELWTGKQLFSVLVRPNANVRVFVNLMLAEKNYS 118
>gi|392592712|gb|EIW82038.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1407
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE+LQL A++INSE G+P K RG +QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EHWEFLQLSVAMYINSELPGVPSQAGQKPM-RGFVQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N ++LKQ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTSHNIDNLKQAVRNGCDVHPG 410
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 74/142 (52%), Positives = 95/142 (66%), Gaps = 2/142 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ L+ + Y+ C I + G+L+ +PGC+ E+TLEA+I LS +RD
Sbjct: 702 DVIPGRKLAAKKDDLVEKAYADCLDLIALAKKGKLENKPGCNQEQTLEAMISSVLSKVRD 761
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL N PL+MA SGSKGS IN+SQM+ACVGQQ I GKRVP+GF +RSLPHF
Sbjct: 762 AVGEICMSELSRHNAPLIMATSGSKGSVINVSQMVACVGQQIIAGKRVPDGFQDRSLPHF 821
Query: 227 DKFSKDPASKGNVKFLRYGNRL 248
K SK+P SKG V+ Y L
Sbjct: 822 PKKSKEPPSKGFVRNSFYSGLL 843
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+ + + IPPP I KP LWTGKQIF+++++PN+ + N+++K
Sbjct: 566 DGDLQIDIPPPTIWKPVRLWTGKQIFNVLMRPNKQSKIFVNVESK 610
>gi|384497273|gb|EIE87764.1| hypothetical protein RO3G_12475 [Rhizopus delemar RA 99-880]
Length = 1273
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 86/112 (76%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQL AL+INSE G+ LN +RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 265 LMEQWEFLQLAAALYINSEMPGV-LNATSGKPTRGLCQRLKGKQGRFRGNLSGKRVDFSG 323
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN++I QV +PE VAK+LT+PERV+ N L+Q V+NGP HPG
Sbjct: 324 RTVISPDPNMRIDQVAVPERVAKVLTFPERVNRHNIHKLRQNVINGPFVHPG 375
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 90/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R K + Y+KC+ I SG+L T PGC+ E+T+E+++ LS +R
Sbjct: 659 DVTPGERLSRIKFNEVETAYAKCDEVIAKYNSGQLDTMPGCNEEQTMESIVSGILSAVRG 718
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
GK C++EL+ N P +MA GSKGS IN+SQM+ACVGQQ I+G R+PNGF +RSLPHF
Sbjct: 719 DLGKVCMEELNMYNSPSIMARCGSKGSQINVSQMVACVGQQIISGTRIPNGFQDRSLPHF 778
Query: 227 DKFSKDPASKGNVK 240
K SK P +KG V+
Sbjct: 779 LKHSKTPPAKGFVR 792
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 35/50 (70%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ + + +PPP I KP+ LWTGKQ+F+++ +PN++ V +++ K +++
Sbjct: 530 DADLKIDLPPPVIWKPQRLWTGKQVFNVLFRPNKESKVLLSVEAKTKSFV 579
>gi|430813213|emb|CCJ29412.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1390
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 84/112 (75%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W++LQL A++INSE GI K RG QRLKGKQGRFRGNLSGKRVDF++
Sbjct: 306 LMEQWDYLQLCVAMYINSELPGISSQANTKP-MRGFCQRLKGKQGRFRGNLSGKRVDFSA 364
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVI PDPNL I Q+ IPE +AKILTYPE+V + N E LK+ ++NGPD HPG
Sbjct: 365 RTVIGPDPNLSIDQIAIPERIAKILTYPEKVTYYNIEQLKKAIINGPDIHPG 416
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/135 (53%), Positives = 92/135 (68%), Gaps = 3/135 (2%)
Query: 109 DKHPGLL--RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG+L + KE L+ Y C+ I A+ SG+L+ QPGC AE+TLEA + LS +RD
Sbjct: 678 DVQPGVLLKKKKESLVKAAYQSCDDLIYALSSGKLENQPGCDAEQTLEAKVSGILSKVRD 737
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N L+MA GSKGS IN+SQM++CVGQQ I+G RVPNGF +RSLPHF
Sbjct: 738 DVGQICMSELARTNASLIMATCGSKGSKINVSQMVSCVGQQIISGSRVPNGFQDRSLPHF 797
Query: 227 DKFSK-DPASKGNVK 240
K K P +KG VK
Sbjct: 798 QKNCKFQPPAKGFVK 812
>gi|388857575|emb|CCF48724.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Ustilago hordei]
Length = 1400
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 74/111 (66%), Positives = 84/111 (75%), Gaps = 3/111 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
+ WE+LQL AL+INSE G+P QP K SRG QRLKGKQGRFRGNLSGKRVDF+ R
Sbjct: 307 QQWEFLQLTVALYINSELPGVP--TQPGQKPSRGFCQRLKGKQGRFRGNLSGKRVDFSGR 364
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVI PDPNL+I +V +P+ VAKILTYPERV N E L+Q V NG D HPG
Sbjct: 365 TVIGPDPNLKIDEVAVPQRVAKILTYPERVFEHNIEQLRQAVRNGTDVHPG 415
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 87/129 (67%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K+ + Y++C I + G+L+ PGC E+TLE +I LS +R G+
Sbjct: 707 PNLRKNKDAKVEAAYAECLDLIEKAKHGKLENLPGCDQEQTLENMISGVLSGVRSDVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+ EL N PLVMA+SGSKGS IN++QM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 767 CMTELSRHNAPLVMAVSGSKGSKINVAQMVACVGQQIIAGSRVPNGFQDRSLPHFPKKSK 826
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 827 DPPSKGFVR 835
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + + IPPPAIMKP LWTGKQ+ S +++PNR P NL+ + R +
Sbjct: 570 FADADLQIDIPPPAIMKPVRLWTGKQVMSCLIRPNRKSPHLINLEAQCRTF 620
>gi|303389791|ref|XP_003073127.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
gi|303302272|gb|ADM11767.1| DNA-directed RNA polymerase subunit alpha [Encephalitozoon
intestinalis ATCC 50506]
Length = 1315
Score = 149 bits (375), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 86/113 (76%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE + + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 283 LINEDWDHLQLQCALLINSELPQVGIPGQP---IRGIVQRLKGKNGRFRCNLSGKRVDFS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT ERV NK+ L+ LVLNGP+K+PG
Sbjct: 340 GRTVISPDPNLSIEEVGIPERMAKILTISERVTSFNKKKLQALVLNGPEKYPG 392
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 78/134 (58%), Gaps = 8/134 (5%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ +GY +CE I +E + E + ++ L+ IR+
Sbjct: 672 DVQPGPILRQKKETVVGKGYLECENKI--LEYSKKSESSEEMLEMEISSI----LNRIRE 725
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N P M GSKGS IN+SQM+ACVGQQ ++G R+PNG D+R LPHF
Sbjct: 726 ECGSICINELSIRNSPNTMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDDRCLPHF 785
Query: 227 DKFSKDPASKGNVK 240
K S+ P SKG V+
Sbjct: 786 RKGSRTPESKGFVR 799
>gi|45935341|gb|AAS79692.1| RNA polymerase III large subunit [Taxus canadensis]
Length = 546
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC +I G+L QPGC+A +TLE+ I EL+ IR+
Sbjct: 195 DVQPGTRLSAKKEEQIREGYSKCNMHIDLYNKGKLTLQPGCNAAQTLESEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+L GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 IAGSICLKELHWRNSPLIMSLCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 46.6 bits (109), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LWTGKQ+F+++++PN V NL + Y+
Sbjct: 74 IDLPTPAILKPIELWTGKQLFTVLVRPNAKMRVFVNLIVMEKNYS 118
>gi|449462093|ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Cucumis sativus]
Length = 1400
Score = 148 bits (374), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W+ LQ A INS+ GIP +MQ G +QRLKGKQGRFRGNL GKRV+FT RT
Sbjct: 303 ESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTGRT 362
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +P H+A+ILTYPERV N E L+Q V NGPDK+PG
Sbjct: 363 VISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPG 412
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L++ K+ + EGY C+ I +G L + GC A ++LE+ I + L+ IR+
Sbjct: 699 DVQPGDQLVKKKQTTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIRE 758
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
C+Q LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF +RSLPHF
Sbjct: 759 ATANVCMQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHF 818
Query: 227 DKFSKDPASKGNV 239
+ +K PA+KG V
Sbjct: 819 RRKAKTPAAKGFV 831
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
V +P PA++KP LWTGKQ+FS++++P+ V NL K ++Y+ VK +ER
Sbjct: 572 VDLPTPALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYS-----KVKGNEKERE 626
Query: 366 TAC 368
T C
Sbjct: 627 TMC 629
>gi|213410469|ref|XP_002176004.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
gi|212004051|gb|EEB09711.1| DNA-directed RNA polymerase III complex large subunit Rpc1
[Schizosaccharomyces japonicus yFS275]
Length = 1406
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 82/112 (73%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQL AL+INSE G+ P +RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFLQLSVALYINSELPGLRPPDMPSKPTRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNLQI QV +P +AKILTYPE+V N + L+ V NGPD HPG
Sbjct: 360 RTVISPDPNLQIDQVAVPLRIAKILTYPEKVTDQNIDALRTRVTNGPDVHPG 411
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+ + YS + I G L+ QPG + E TLE+ I LS +RD
Sbjct: 696 DVQPGQRLYHTKEALVEKAYSVSDDLIMQYAKGTLECQPGMNQEATLESKISSTLSKVRD 755
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I+GKRVP+GF +RSLPHF
Sbjct: 756 DVGETCMKELGSRNAPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHF 815
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 816 RKNSKHPLAKGFV 828
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
IPPPAI+KP+ LWTGKQ+F ++++PN PV NL R+
Sbjct: 574 IPPPAILKPRCLWTGKQLFGVLMRPNHLSPVMVNLAANTRS 614
>gi|302785289|ref|XP_002974416.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
gi|300158014|gb|EFJ24638.1| hypothetical protein SELMODRAFT_442419 [Selaginella moellendorffii]
Length = 1348
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 85/110 (77%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQ+ A++INSE G+P NMQ RG +QRLKGKQGRFRGNLSGKRVDFT RT
Sbjct: 321 EIWDFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRT 380
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL++ +V +P +A+ LTYPE+V N E L+Q V+NG +KHPG
Sbjct: 381 VISPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPG 430
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE+ ++EGY C+ +I G+L QPGC A +TLE+ I EL+ IR+
Sbjct: 715 DVQPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIRE 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ ELH N PL+M+ GSKGS INISQMIACVGQQ+++G R PNGF RSLPHF
Sbjct: 775 AAGQVCVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHF 834
Query: 227 DKFSKDPASKGNV 239
+ K P +KG V
Sbjct: 835 PRNDKTPQAKGFV 847
Score = 41.6 bits (96), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
+P PAI+KP LWTGKQ+F ++++P+ V N
Sbjct: 592 LPTPAILKPVELWTGKQLFGVLIRPSARIKVFLNF 626
>gi|302808041|ref|XP_002985715.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
gi|300146624|gb|EFJ13293.1| hypothetical protein SELMODRAFT_446351 [Selaginella moellendorffii]
Length = 1393
Score = 148 bits (374), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 68/110 (61%), Positives = 85/110 (77%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQ+ A++INSE G+P NMQ RG +QRLKGKQGRFRGNLSGKRVDFT RT
Sbjct: 321 EIWDFLQIQVAMYINSELPGLPPNMQTGKPLRGFVQRLKGKQGRFRGNLSGKRVDFTGRT 380
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL++ +V +P +A+ LTYPE+V N E L+Q V+NG +KHPG
Sbjct: 381 VISPDPNLKVSEVAVPILMAQTLTYPEKVSAHNIEKLRQRVINGKEKHPG 430
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE+ ++EGY C+ +I G+L QPGC A +TLE+ I EL+ IR+
Sbjct: 711 DVQPGSRLTVEKEKRIAEGYRACDKHISLFNKGQLTLQPGCDAAQTLESEITGELNKIRE 770
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ ELH N PL+M+ GSKGS INISQMIACVGQQ+++G R PNGF RSLPHF
Sbjct: 771 AAGQVCVNELHWRNSPLIMSQCGSKGSVINISQMIACVGQQSVSGHRAPNGFIERSLPHF 830
Query: 227 DKFSKDPASKGNV 239
+ K P +KG V
Sbjct: 831 PRNDKTPQAKGFV 843
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
+P PAI+KP LWTGKQ+F ++++P+ V N
Sbjct: 592 LPTPAILKPVELWTGKQLFGVLIRPSARIKVFLNF 626
>gi|50549343|ref|XP_502142.1| YALI0C22550p [Yarrowia lipolytica]
gi|49648009|emb|CAG82462.1| YALI0C22550p [Yarrowia lipolytica CLIB122]
Length = 1483
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+ + Y+KC+ I A+ G+L+ QPGC+ +TLEA I LS +R+
Sbjct: 706 DVTPGAELSSTKEILVEQAYAKCDELIEALAQGKLEPQPGCTPAQTLEAKIGGLLSKVRE 765
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL SN PL+MA GSKGS +N+SQM+A VGQQ I+GKRVPNGF +RSLPHF
Sbjct: 766 EVGEVCIKELEKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGKRVPNGFQDRSLPHF 825
Query: 227 DKFSKDPASKGNVK 240
KFS P SKG V+
Sbjct: 826 RKFSVTPPSKGFVR 839
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E WE LQL A++INS+T P Q SK R L QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 310 LMEQWELLQLAVAVYINSDTPQGP--GQSASKPIRALTQRLKGKQGRFRGNLSGKRVDFS 367
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P+ VAKILTYPERV N E L+ LV+ GP +HPG
Sbjct: 368 GRTVISPDPNLRIDQVAVPDRVAKILTYPERVTSHNIEKLRNLVITGPSQHPG 420
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAI KP LWTGKQ+FSL+++PN+ V NL K + +
Sbjct: 583 IPPPAIQKPVQLWTGKQVFSLLIRPNKSSKVIINLDAKNKTF 624
>gi|393235145|gb|EJD42702.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1404
Score = 148 bits (373), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/135 (52%), Positives = 93/135 (68%)
Query: 105 LNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVI 164
+N P L K+RL++E Y KC+ I + G+LQ +PGC+ ++TLEA+I LS +
Sbjct: 701 INDVTPGPLLTGEKQRLVTEAYEKCQKLIDQAKRGQLQNKPGCNTDQTLEALISDILSDV 760
Query: 165 RDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLP 224
R GK C++EL N P MA GSKGS N++QM+ACVGQQ I G+RVP+GF +RSLP
Sbjct: 761 RGQVGKICMKELSRHNAPWTMATCGSKGSVDNVAQMVACVGQQIIGGRRVPDGFQDRSLP 820
Query: 225 HFDKFSKDPASKGNV 239
HF+K SKDPASKG V
Sbjct: 821 HFEKKSKDPASKGFV 835
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 85/113 (75%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E WE+LQ+ A++INSE G L QP + RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFLQISVAVYINSEMPG--LQNQPNQRPIRGFCQRLKGKQGRFRGNLSGKRVDFS 357
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VAKILTYPERV +N E L+ V NGPD HPG
Sbjct: 358 GRTVISPDPNLRIDEVAVPQRVAKILTYPERVTSSNLEKLRLAVRNGPDVHPG 410
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + +PPP I+KP LWTGKQIFS +L+PN+ V N++TK
Sbjct: 564 FGDALVHIELPPPVILKPARLWTGKQIFSCLLRPNKSTNVLVNVETK 610
>gi|256083198|ref|XP_002577836.1| RNA polymerase Rpb1 [Schistosoma mansoni]
gi|360044779|emb|CCD82327.1| putative rna polymerase Rpb1 [Schistosoma mansoni]
Length = 1342
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/126 (57%), Positives = 90/126 (71%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ +K L+S G++ C+ YI + L PGCS E+TLE+ I +ELS IRD AG AC
Sbjct: 720 LVASKTALISRGFATCDDYINQYQMNTLVCNPGCSMEDTLESNISQELSKIRDEAGAACK 779
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
++LHPSN PLVMA SGSKGSF+NISQMIACVGQQ I GKRVP+ + RSL HF S+ P
Sbjct: 780 RQLHPSNSPLVMAQSGSKGSFLNISQMIACVGQQVIGGKRVPDVINGRSLVHFPPGSRTP 839
Query: 234 ASKGNV 239
+KG V
Sbjct: 840 EAKGFV 845
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPD 68
L A INS+ SG+P +Q RGL+QRL GK GRFRG+L GKR +FT+RTVISPD
Sbjct: 309 LHAEFARLINSQQSGLP-PVQDHKFMRGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPD 367
Query: 69 PNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSK 128
PN++I +V IP H AK+LTYPERV N L+ LVLNGP+ +PG + +L E +
Sbjct: 368 PNMRIDEVCIPVHCAKLLTYPERVTDFNLNFLRSLVLNGPNNYPGAMFVSYKLRGERKRQ 427
Query: 129 CEG 131
E
Sbjct: 428 AEA 430
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 25/37 (67%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKT 344
+P PAI+ P ALWTGKQIF LIL P+ + NL+
Sbjct: 593 LPKPAILWPVALWTGKQIFGLILSPHPSTGIKVNLRV 629
>gi|255076723|ref|XP_002502032.1| predicted protein [Micromonas sp. RCC299]
gi|226517297|gb|ACO63290.1| predicted protein [Micromonas sp. RCC299]
Length = 1479
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W++LQ+ CA++INSE G+ Q P RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 LMENWDFLQIQCAMYINSELPGLSAQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFS 380
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +VG+P H+AK++TYPE V N E +++ V NG +KHPG
Sbjct: 381 GRTVISPDPNLRIDEVGVPMHIAKMMTYPEVVSRHNIEMIRERVRNGMNKHPG 433
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K +++ GY C+ I A + G L QPGC+AE+TLEA +L LS +R+
Sbjct: 715 DVTPGHRLQDEKGKVVDRGYGACDERIEAFKRGTLALQPGCNAEQTLEAEVLGILSTVRE 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL EL N PL+MAL GSKGS INISQM+ACVGQQA+ G R P+GF RSLPHF
Sbjct: 775 TAGNVCLDELPRHNAPLIMALCGSKGSTINISQMVACVGQQAVGGTRPPDGFAERSLPHF 834
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 835 KRGEKTPAAKGFV 847
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
R++ G L + + +L +V +P PAI+KP LWTGKQ+FS++++P V NL
Sbjct: 576 RAQVGALIAYMGDAL------MAVDLPTPAIIKPVELWTGKQLFSVLIRPRAVDRVFVNL 629
Query: 343 KTKGRAYTFK 352
+ + Y+ K
Sbjct: 630 EVAEKNYSKK 639
>gi|395330745|gb|EJF63128.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Dichomitus squalens LYAD-421 SS1]
Length = 1404
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE+LQL A++INSE G+P M K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWEFLQLSVAMYINSELPGVPSQMGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N + LK+ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTAHNIDRLKKAVRNGCDVHPG 410
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ ++ Y+ CE I + G L+ +PGC E+TLEA I K LS +R + G+
Sbjct: 708 PVLSDKKDSMVEAAYAACEKLIIRAKKGLLENKPGCDQEQTLEAEISKVLSDVRGNVGEI 767
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 768 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 827
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 828 DPPSKGFVR 836
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPP I +P LWTGKQIF+++++PNR V N+++K
Sbjct: 564 FGDADLQIDIPPPTIWRPVRLWTGKQIFNVLMRPNRKSRVFVNVESK 610
>gi|145342014|ref|XP_001416093.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576317|gb|ABO94385.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 1395
Score = 147 bits (372), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W++LQ+ CA++INSE G+ L Q P RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 319 MMENWDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL+I +VG+P H+AK +TYPE V+ N L++ V NG KHPG
Sbjct: 379 ARTVISPDPNLRIDEVGVPIHIAKTMTYPEVVNKHNMVMLRERVRNGMAKHPG 431
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 85/122 (69%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K R + +GY C+ I + E G L Q GC+AEETLEA +L LS +R+ AG ACL+ L
Sbjct: 723 KGRRIEDGYRTCDERIASYEKGTLPLQAGCNAEETLEAEVLGVLSAVREAAGNACLKALP 782
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N PL+MAL GSKGS INISQMIACVGQQA+ G R P+GF RSLPHF + K PA+KG
Sbjct: 783 RRNAPLIMALCGSKGSTINISQMIACVGQQAVGGSRPPDGFAERSLPHFRRGEKTPAAKG 842
Query: 238 NV 239
V
Sbjct: 843 FV 844
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS+ G L + + +L SV +P PAI+KP LWTGKQ+FS++++P + NL
Sbjct: 574 RSQFGSLVAYMGDAL------LSVDLPTPAILKPIELWTGKQVFSVLIRPKASDHIYVNL 627
Query: 343 KTKGRAYTFKFSIMVKDQ 360
+ + Y K M D
Sbjct: 628 EVAEKLYNKKDKTMCPDD 645
>gi|393215308|gb|EJD00799.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1403
Score = 147 bits (371), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 73/110 (66%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQ+ A++INSET GIP+ M K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWDFLQVSVAIYINSETPGIPIQMAQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V IPE VAKILTYPERV N L+ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAIPERVAKILTYPERVTAHNVNVLRYAVRNGCDVHPG 410
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K++L+ Y C I + G+L+ +PGC+ E+TLEA+I LS +RD G
Sbjct: 707 PTLSANKDKLIETAYETCIDLIAQAKKGKLENKPGCNQEQTLEAMISGVLSKVRDTVGDT 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+ QM+ACVGQQ I GKRVP+GF +RSLPHF K SK
Sbjct: 767 CMKELSRHNAPLIMATCGSKGSAINVCQMVACVGQQIIAGKRVPDGFQDRSLPHFPKKSK 826
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 827 EPPSKGFVR 835
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPP I+KP+ LWTGKQIF+++++PN+ V N+++K
Sbjct: 564 FCDADLQIDIPPPTILKPQRLWTGKQIFNVLMRPNKRSNVLVNVESK 610
>gi|45935339|gb|AAS79691.1| RNA polymerase III large subunit [Thuja occidentalis]
Length = 546
Score = 147 bits (371), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC+ +I G+L QPGC+A +TLEA I L+ IR+
Sbjct: 195 DVQPGTRLSAKKEEQIREGYSKCDMHIDLYNKGKLTLQPGCNAAQTLEAEISGVLNRIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+L GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 IAGSICLKELHWRNSPLIMSLCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKTPAAKGFV 327
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LWTGKQ+F+++++PN V NL + Y+
Sbjct: 74 IDLPTPAILKPIELWTGKQLFTVLVRPNAKMRVFVNLIVMEKNYS 118
>gi|303276410|ref|XP_003057499.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461851|gb|EEH59144.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 1591
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 87/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W++LQ+ A++ NSE G+ L Q P RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 LMENWDFLQVQIAMYFNSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFS 380
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +VG+P H+AK++TYPE + N EH+++ V NG +KHPG
Sbjct: 381 GRTVISPDPNLRIDEVGVPMHIAKLMTYPEVISKHNIEHIRERVRNGMNKHPG 433
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 95/133 (71%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K +++S+GY+ C+ I A + G L QPGC+AE+TLE+ +L LS +R+
Sbjct: 701 DVTPGARLSAEKAKVVSKGYADCDTRIEAWKQGTLALQPGCNAEQTLESEVLGILSNVRE 760
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG ACL+EL N PL+MAL GSKGS INISQM+ACVGQQA+ G+R P+GF RSLPHF
Sbjct: 761 TAGNACLEELPRINAPLIMALCGSKGSTINISQMVACVGQQAVGGQRPPDGFAERSLPHF 820
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 821 RRGEKTPAAKGFV 833
>gi|449525688|ref|XP_004169848.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit rpc1-like, partial [Cucumis sativus]
Length = 693
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 69/110 (62%), Positives = 81/110 (73%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W+ LQ A INS+ GIP +MQ G +QRLKGKQGRFRGNL GKRV+FT RT
Sbjct: 1 ESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLCGKRVEFTGRT 60
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +P H+A+ILTYPERV N E L+Q V NGPDK+PG
Sbjct: 61 VISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPG 110
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L++ + + EGY C+ I +G L + GC A ++LE+ I + L+ IR+
Sbjct: 397 DVQPGDQLVKKNKXTILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIRE 456
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
C+Q LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF +RSLPHF
Sbjct: 457 ATANVCMQNLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHF 516
Query: 227 DKFSKDPASKGNV 239
+ +K PA+KG V
Sbjct: 517 RRKAKTPAAKGFV 529
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 5/63 (7%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
V +P PA++KP LWTGKQ+FS++++P+ V NL K ++Y+ VK +ER
Sbjct: 270 VDLPTPALVKPIELWTGKQLFSVLVRPHASMKVYLNLTVKEKSYS-----KVKGNEKERE 324
Query: 366 TAC 368
T C
Sbjct: 325 TMC 327
>gi|45935335|gb|AAS79689.1| RNA polymerase III large subunit [Welwitschia mirabilis]
Length = 548
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 76/133 (57%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYSKC +I G+L QPGC+A +TLEA I EL+ IR+
Sbjct: 195 DVQPGARLSSQKEERIKEGYSKCGMHIDLYNKGKLSLQPGCNAAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 IAGSVCLKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 315 PRNDKPPAAKGFV 327
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
S+ +P PAI+KP LWTGKQ+FS++++PN V NL + Y+
Sbjct: 73 SIDLPTPAILKPIELWTGKQLFSVLVRPNAKMRVFVNLMVMEKNYS 118
>gi|409049560|gb|EKM59037.1| hypothetical protein PHACADRAFT_169499 [Phanerochaete carnosa
HHB-10118-sp]
Length = 1403
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQL A++INSE G+P M K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWDFLQLSIAMYINSELPGVPSQMGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N E LK+ + NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTQHNLEILKKAIRNGCDVHPG 410
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 91/129 (70%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L KE ++ + Y++C+ I + G L+ +PGC E+TLEA+I LS +R+ G+
Sbjct: 707 PILAAQKESMVQKAYAECDDLIARAKKGLLENKPGCDQEQTLEAMISSVLSNVREKVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA SGSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 767 CMKELSRHNAPLIMATSGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 826
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 827 EPPSKGFVR 835
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 34/45 (75%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+ + + IPPP I+KP+ LWTGKQIF+++++PNR V N++++
Sbjct: 566 DADLQIDIPPPTILKPQRLWTGKQIFNVLMRPNRHSRVRVNVESR 610
>gi|392512733|emb|CAD25541.2| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1316
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE I + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 284 LINEDWDHLQLQCALLINSELPQIGIPGQP---VRGIVQRLKGKNGRFRCNLSGKRVDFS 340
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT ERV N+ L+ LVLNGP+ +PG
Sbjct: 341 GRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPG 393
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 8/133 (6%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ GY++CE I +E + +P + EE LE I L+ IR+
Sbjct: 673 DVQPGPILRQKKEMVVRRGYAECESKI--LEYSK---KPEAN-EEMLEMEISSILNRIRE 726
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P +M GSKGS IN+SQM+ACVGQQ ++G R+PNG D R LPHF
Sbjct: 727 ECGSICIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHF 786
Query: 227 DKFSKDPASKGNV 239
+ S+ P SKG V
Sbjct: 787 KRGSRTPESKGFV 799
>gi|19074431|ref|NP_585937.1| DNA-DIRECTED RNA POLYMERASE III 160 kDa SUBUNIT (LARGEST SUBUNIT)
[Encephalitozoon cuniculi GB-M1]
Length = 1349
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE I + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 317 LINEDWDHLQLQCALLINSELPQIGIPGQP---VRGIVQRLKGKNGRFRCNLSGKRVDFS 373
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT ERV N+ L+ LVLNGP+ +PG
Sbjct: 374 GRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPG 426
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 8/133 (6%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ GY++CE I +E + +P + EE LE I L+ IR+
Sbjct: 706 DVQPGPILRQKKEMVVRRGYAECESKI--LEYSK---KPEAN-EEMLEMEISSILNRIRE 759
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P +M GSKGS IN+SQM+ACVGQQ ++G R+PNG D R LPHF
Sbjct: 760 ECGSICIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHF 819
Query: 227 DKFSKDPASKGNV 239
+ S+ P SKG V
Sbjct: 820 KRGSRTPESKGFV 832
>gi|449330082|gb|AGE96346.1| DNA-directed RNA polymerase III 160 kDa subunit [Encephalitozoon
cuniculi]
Length = 1349
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/113 (63%), Positives = 84/113 (74%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW+ LQL CAL INSE I + QP RG++QRLKGK GRFR NLSGKRVDF+
Sbjct: 317 LINEDWDHLQLQCALLINSELPQIGIPGQP---VRGIVQRLKGKNGRFRCNLSGKRVDFS 373
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VGIPE +AKILT ERV N+ L+ LVLNGP+ +PG
Sbjct: 374 GRTVISPDPNLSIEEVGIPERMAKILTISERVTRLNRRKLQALVLNGPENYPG 426
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 82/133 (61%), Gaps = 8/133 (6%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ GY++CE I +E + +P + EE LE I L+ IR+
Sbjct: 706 DVQPGPILRQKKEMVVRRGYAECESKI--LEYSK---KPEAN-EEMLEMEISSILNRIRE 759
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P +M GSKGS IN+SQM+ACVGQQ ++G R+PNG D R LPHF
Sbjct: 760 ECGSICIKELGIRNSPNIMQACGSKGSKINVSQMVACVGQQIVSGTRIPNGMDERCLPHF 819
Query: 227 DKFSKDPASKGNV 239
+ S+ P SKG V
Sbjct: 820 KRGSRTPESKGFV 832
>gi|385303556|gb|EIF47620.1| dna-directed rna polymerase iii largest subunit [Dekkera
bruxellensis AWRI1499]
Length = 1472
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 89/122 (72%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K+ ++ Y KC+ I+ +SG+L+TQPGC+ EETLEA I LS +R+ G+ C+ EL
Sbjct: 726 KQEMVRIAYKKCDDLIKLYKSGKLETQPGCNEEETLEAKIGGLLSKVREEVGEFCINELD 785
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
PSN PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF NR+LPHF K SK P SKG
Sbjct: 786 PSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQNRTLPHFPKNSKTPQSKG 845
Query: 238 NV 239
V
Sbjct: 846 FV 847
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 89/127 (70%), Gaps = 13/127 (10%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLSGK 55
E W++LQL A++INS++ + N+ P S RG QRLKGKQGRFRGNLSGK
Sbjct: 314 EQWDYLQLAVAMYINSDS--VSPNLMPGSTGGSKSSKPIRGFCQRLKGKQGRFRGNLSGK 371
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF++RTVISPDPNL++ QV PE VAK+LTYPERV NK L+ LV NGPD +PG
Sbjct: 372 RVDFSARTVISPDPNLRVDQVCXPELVAKVLTYPERVTRYNKNKLQTLVRNGPDLYPGAN 431
Query: 114 -LLRAKE 119
L+R E
Sbjct: 432 YLIRRNE 438
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPP I+KP +WTGKQI+SL+++PN + V N +K + +
Sbjct: 588 TKFDVPPPTILKPAYMWTGKQIYSLLIRPNHESKVLLNFDSKSKTF 633
>gi|328354455|emb|CCA40852.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1460
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R KE ++ E Y KC+ I+ G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 716 DVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVRE 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL SN PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 776 EVGEVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 836 LKNSKTPQSKGFVR 849
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 15/130 (11%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPK------SKS----RGLIQRLKGKQGRFRGNLS 53
E W++LQL A++INS+ ++M P SKS RG QRLKGKQGRFRGNLS
Sbjct: 313 EQWDYLQLSVAMYINSDAGN--MSMLPSAAGSAGSKSSKPIRGFCQRLKGKQGRFRGNLS 370
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+V NK L+QLVLNGPD HPG
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPG 430
Query: 114 ---LLRAKER 120
LL+ E+
Sbjct: 431 ANYLLKRDEQ 440
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPP+I KP LWTGKQ+FSL++KPN VN NL K + +
Sbjct: 593 LPPPSIFKPAYLWTGKQVFSLLIKPNAKSNVNINLDAKCKTF 634
>gi|164657764|ref|XP_001730008.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
gi|159103902|gb|EDP42794.1| hypothetical protein MGL_2994 [Malassezia globosa CBS 7966]
Length = 1376
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 81/110 (73%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQL AL+INSE G+P M RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 285 EQWDFLQLSVALYINSEMPGVP-PMSGHKPIRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 343
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I ++ +PE VAKILTYPERV N E ++Q V NG D HPG
Sbjct: 344 VISPDPNLAIDEIAVPERVAKILTYPERVFAHNIEAMRQAVRNGTDTHPG 393
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+R + Y +C I + G+L+ PGC E+TLE+ I LS +R
Sbjct: 680 DVTPGQHLRETKDRNVEIAYRQCRDLIELAKRGKLENLPGCDQEQTLESKISGVLSSVRS 739
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL N L+M++ GSKGS IN++QM+ACVGQQ I+G RVPNGF +RSLPHF
Sbjct: 740 DVGEICMTELSRHNAALLMSVCGSKGSKINVAQMVACVGQQIISGSRVPNGFQDRSLPHF 799
Query: 227 DKFSKDPASKGNVK 240
K SKDP SKG V+
Sbjct: 800 PKKSKDPPSKGFVR 813
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + +PPPAI+KP LWTGKQ+FS +++PN+ PV NL+ + R +
Sbjct: 548 FGDASLHIDLPPPAILKPVRLWTGKQLFSCMIRPNKQSPVLVNLEARCRTF 598
>gi|214028080|gb|ACJ63309.1| RNA polymerase III large subunit [Illicium parviflorum]
Length = 546
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/133 (55%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGY+KC+ +I G+L QPGC++ +TLEA I EL+ IR+
Sbjct: 193 DVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIRE 252
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 253 IAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 312
Query: 227 DKFSKDPASKGNV 239
+ K PA+KG V
Sbjct: 313 PRNDKTPAAKGFV 325
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ 360
++ +P PAI+KP LWTGKQ+FS++++PN + V NL + Y+ M ++
Sbjct: 71 AIDLPTPAILKPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKSGETMCRND 126
>gi|168009054|ref|XP_001757221.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691719|gb|EDQ78080.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1397
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 92/126 (73%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L R KE+ +++GY+ C+ +I+ + G+L+ QPGC+A +TLE+ + EL+ IR+ AG C
Sbjct: 715 LNREKEKQITKGYNACDQHIQLYKKGKLELQPGCNAAQTLESAVTGELNKIREAAGNVCK 774
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELH N PL+M+ GSKGSFINISQM+ACVGQQ++ GKR PNGF +R+LPHF + + P
Sbjct: 775 DELHWRNSPLIMSECGSKGSFINISQMVACVGQQSVGGKRAPNGFIDRTLPHFPRHDRTP 834
Query: 234 ASKGNV 239
KG V
Sbjct: 835 QGKGFV 840
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/112 (58%), Positives = 82/112 (73%), Gaps = 3/112 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKS--KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
E WE LQ + INSET +P + QP S + RG +QRLKGKQGRFRGNLSGKRVDFT
Sbjct: 315 ETWELLQSQVSQLINSETP-VPRSEQPTSGKQPRGFVQRLKGKQGRFRGNLSGKRVDFTG 373
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P +A++LTYPE+V N + L+ ++NG KHPG
Sbjct: 374 RTVISPDPNLKITEVAVPLLMAQLLTYPEKVSRYNIDKLRGRIINGMTKHPG 425
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
++ +P P+I+KP LWTGKQ+FS++++PN V NL + + Y K
Sbjct: 584 NIDLPTPSIIKPMELWTGKQLFSVLVRPNAKTRVFVNLVSYEKNYDKK 631
>gi|308800888|ref|XP_003075225.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
gi|116061779|emb|CAL52497.1| RNA polymerase I, large subunit (ISS) [Ostreococcus tauri]
Length = 1406
Score = 146 bits (368), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/122 (58%), Positives = 89/122 (72%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K+R + +GY+ C+ I + E G L Q GC+AEETLEA +L LS +R+ AG ACLQ L
Sbjct: 724 KQRRIEDGYATCDQRIASYEKGTLPLQAGCNAEETLEAEVLGVLSSVREAAGNACLQALP 783
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N PL+MAL GSKGS INISQM+ACVGQQA++G R P+GF +RSLPHF + K PA+KG
Sbjct: 784 RHNAPLIMALCGSKGSTINISQMVACVGQQAVSGSRPPDGFAHRSLPHFKRGEKTPAAKG 843
Query: 238 NV 239
V
Sbjct: 844 FV 845
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 86/113 (76%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ-PKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W++LQ+ CA++INSE G+ L Q P RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 LMENWDFLQIQCAMYINSELPGLSLQYQGPGKPLRGFVQRLKGKQGRFRGNLSGKRVDFS 379
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL I +VGIP ++AK +TYPE V+ N L++ V NG +HPG
Sbjct: 380 ARTVISPDPNLGIDEVGIPIYIAKTMTYPEVVNRHNIAMLRERVRNGMAEHPG 432
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS+ G L + + +L SV +P PAI+KP +WTGKQIF ++++P + NL
Sbjct: 575 RSQVGQLVAYMGDAL------LSVDLPTPAIVKPIEMWTGKQIFGMLIRPKASDQIFVNL 628
Query: 343 KTKGRAYTFKFSIMVKDQ 360
+ + Y K M D
Sbjct: 629 EVAEKLYNKKDKTMCPDD 646
>gi|403159566|ref|XP_003320172.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375168152|gb|EFP75753.2| DNA-directed RNA polymerase III subunit C1 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 1419
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E WE++QL A++IN+E G+P M K +G QRLKGK GRFRGNLSGKRVDF+
Sbjct: 315 IMEQWEFMQLSVAMYINAELPGVPSQMGVKP-IKGFCQRLKGKTGRFRGNLSGKRVDFSG 373
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ VAKILTYPERV N + L+Q + NGPD HPG
Sbjct: 374 RTVISPDPNLSITEVAVPDRVAKILTYPERVTAHNIDRLRQCIRNGPDIHPG 425
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K L+++ Y + + I+ ++G+L+T PG ++TLEA+I LS +RD
Sbjct: 719 DVTPGERLSTQKNALVAKAYKETDELIQQSKAGKLETLPGRDLDQTLEAMISGVLSKVRD 778
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL N PL+MA GSKGS IN++QM+ACVGQQ I+G R+P+GF +RSLPHF
Sbjct: 779 SLGEICMAELTRHNAPLIMATCGSKGSKINVAQMVACVGQQIISGNRIPDGFQDRSLPHF 838
Query: 227 DKFSKDPASKGNVK 240
K +K+P +KG V+
Sbjct: 839 HKKAKEPPAKGFVR 852
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 283 RSRNGWLSSVLSSSLRFREHET-SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNAN 341
R N + S L++ T + +PPP I KP LWTGKQ+F+++++PN+D PV N
Sbjct: 570 RKDNFYDRQQFSQILQYLSDATLHIDLPPPVIWKPVRLWTGKQVFNVLMRPNKDSPVKVN 629
Query: 342 LKTK 345
++ K
Sbjct: 630 VEAK 633
>gi|392569146|gb|EIW62320.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1403
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 72/110 (65%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE+LQL A++INSE G+P + K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWEFLQLSVAMYINSELPGVPSQLGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAKILTYPERV N + LK+ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKILTYPERVTGHNIDRLKKAVRNGCDVHPG 410
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 68/129 (52%), Positives = 89/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ ++ + Y+ CE I + G L+ +PGC E+TLEA I K LS +R + G+
Sbjct: 707 PVLSGKKDSMVEDAYAACERLIIRAKKGLLENKPGCDQEQTLEAEISKVLSDVRGNVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 767 CMKELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 826
Query: 232 DPASKGNVK 240
DP SKG V+
Sbjct: 827 DPPSKGFVR 835
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPPAI KP LWTGKQ+F+++++PNR V N+++K
Sbjct: 564 FADADLQIDIPPPAIWKPVRLWTGKQVFNVLMRPNRQSKVFVNVESK 610
>gi|254573222|ref|XP_002493720.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
gi|238033519|emb|CAY71541.1| RNA polymerase III subunit C160, part of core enzyme [Komagataella
pastoris GS115]
Length = 1460
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 76/130 (58%), Positives = 93/130 (71%), Gaps = 15/130 (11%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPK------SKS----RGLIQRLKGKQGRFRGNLS 53
E W++LQL A++INS+ ++M P SKS RG QRLKGKQGRFRGNLS
Sbjct: 313 EQWDYLQLSVAMYINSDAGN--MSMLPSAAGSAGSKSSKPIRGFCQRLKGKQGRFRGNLS 370
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+V NK L+QLVLNGPD HPG
Sbjct: 371 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPEKVTRYNKHKLQQLVLNGPDVHPG 430
Query: 114 ---LLRAKER 120
LL+ E+
Sbjct: 431 ANYLLKRDEQ 440
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 73/134 (54%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R KE ++ E Y KC+ I+ G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 716 DVTPGDELSREKECMVEEAYKKCDELIKLFNHGKLETQPGCNEEQTLEAKIGGLLSKVRE 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL SN PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 776 EVGGVCIKELPSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 836 LKNSKTPQSKGFVR 849
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPP+I KP LWTGKQ+FSL++KPN VN NL K + +
Sbjct: 593 LPPPSIFKPAYLWTGKQVFSLLIKPNAKSNVNINLDAKCKTF 634
>gi|190347890|gb|EDK40245.2| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 90/118 (76%), Gaps = 6/118 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL--NMQPKSKS----RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+ + L +M +KS RG QRLKGKQGRFRGNLSGK
Sbjct: 239 LMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGK 298
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RVDF++RTVISPDPNL+I +V +P+ VAK+LTYPE+ N++ L+QL+LNGPD HPG
Sbjct: 299 RVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPG 356
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 642 DVTPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVRE 701
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 702 QVGEVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 761
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 762 TKNSKTPQSKGFVR 775
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPP I KP LWTGKQ+FSL++KPN++ V NL K +A+T
Sbjct: 519 LPPPTIFKPVMLWTGKQVFSLLMKPNKNSNVIVNLDAKNKAFT 561
>gi|389744278|gb|EIM85461.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1404
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/112 (63%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQL ++INSE G+P M K RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFLQLSVGMYINSEMPGVPSQMGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSG 358
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +PE VAKILTYPERV N + L++ V NG D HPG
Sbjct: 359 RTVISPDPNLRIDEVAVPERVAKILTYPERVTGFNIDRLRKAVRNGCDVHPG 410
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 90/129 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K+ L+ + Y+KC I + G+L+ +PGC E+TLEA+I LS +R+ G+
Sbjct: 708 PILSEKKDDLVEKAYAKCLDMITLAKKGKLENKPGCDQEQTLEAMISGVLSKVREEVGQI 767
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 768 CMEELSRHNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 827
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 828 EPPSKGFVR 836
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + + IPPP I KP LWTGKQ+F++++ PN+ V N++TK
Sbjct: 564 FADADLQIDIPPPTIWKPVRLWTGKQVFNVLMHPNKKSNVLVNVETK 610
>gi|146415288|ref|XP_001483614.1| DNA-directed RNA polymerase III largest subunit [Meyerozyma
guilliermondii ATCC 6260]
Length = 1379
Score = 145 bits (366), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/118 (58%), Positives = 90/118 (76%), Gaps = 6/118 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL--NMQPKSKS----RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+ + L +M +KS RG QRLKGKQGRFRGNLSGK
Sbjct: 239 LMEQWDYLQLSVAMYINSDAANPALLPSMSGGAKSAKPIRGFCQRLKGKQGRFRGNLSGK 298
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RVDF++RTVISPDPNL+I +V +P+ VAK+LTYPE+ N++ L+QL+LNGPD HPG
Sbjct: 299 RVDFSARTVISPDPNLRIDEVAVPDRVAKVLTYPEKCTRYNRKKLQQLILNGPDVHPG 356
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 642 DVTPGTDLKRKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVRE 701
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 702 QVGEVCINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 761
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 762 TKNSKTPQSKGFVR 775
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPP I KP LWTGKQ+FSL++KPN++ V NL K +A+T
Sbjct: 519 LPPPTIFKPVMLWTGKQVFSLLMKPNKNSNVIVNLDAKNKAFT 561
>gi|325185155|emb|CCA19646.1| DNAdirected RNA polymerase III largest subunit puta [Albugo
laibachii Nc14]
gi|325188545|emb|CCA23078.1| RNA polymerase III putative [Albugo laibachii Nc14]
Length = 1543
Score = 145 bits (366), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 66/113 (58%), Positives = 84/113 (74%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M+ EDW++LQ+ A ++ +T G+ M RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 324 MVMEDWDFLQIQVAQLMHGDTPGLVKPMNAPKSIRGYCQRLKGKQGRFRGNLSGKRVDFS 383
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QVG+P+HVAK +TYPE+V N L++ V+NGP+ HPG
Sbjct: 384 GRTVISPDPNLRIDQVGVPQHVAKTMTYPEKVTRYNINKLRKCVVNGPNVHPG 436
Score = 112 bits (279), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 80/126 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K LL GY+ I G+L +PGC+A ++LE+ + L +R+ AG C+
Sbjct: 725 LMGKKNELLQSGYNGANEAIEQYRLGKLPLKPGCNAIQSLESELNGLLGKLRETAGAECM 784
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N P +MA GSKGS +NISQM+ACVGQQ+++GKRVP GF NR+LPHF +
Sbjct: 785 RTLPFHNNPRIMAECGSKGSALNISQMVACVGQQSVSGKRVPEGFVNRTLPHFLPHALHA 844
Query: 234 ASKGNV 239
A+KG V
Sbjct: 845 AAKGFV 850
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ---FR 362
+ IP PAI+ P LWTGKQ+ SL++KPN + NL+ K R YT + KD FR
Sbjct: 597 IDIPEPAIIHPLRLWTGKQVISLLIKPNDFSKILVNLELKERNYTNNTYMCYKDGYVCFR 656
Query: 363 ERNTAC 368
C
Sbjct: 657 NSELMC 662
>gi|357472549|ref|XP_003606559.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
gi|355507614|gb|AES88756.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
Length = 1036
Score = 145 bits (365), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 84/117 (71%)
Query: 3 QEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
Q+ + LQ A +INS+ G P N+Q G IQR+KGKQGRFR NLSGKRV++T R
Sbjct: 152 QDAYLMLQFEVAQYINSDVKGGPYNLQMSKPLTGFIQRIKGKQGRFRSNLSGKRVEYTGR 211
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
TVISPDPNL+I +V IP H+A+ILTYPERV H N E L+Q V NGPDK+PG KE
Sbjct: 212 TVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMVKE 268
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ KE+ + +GY KC+GYI G L+ PGC A +TLE+ I L+ +RD K C+
Sbjct: 557 LIKGKEKTIEDGYKKCDGYIEDFNKGELKLAPGCDAAQTLESKIFSTLNGLRDTTAKVCM 616
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ LH N PL+M+ GSKGS INI QM+ACVGQQ++ G R NGF +R+LPHF K + P
Sbjct: 617 ETLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRATNGFIDRNLPHFPKKANTP 676
Query: 234 ASKGNVK 240
+KG VK
Sbjct: 677 DAKGFVK 683
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
V +P PAI+KP LW+GKQ+F+++L+P+ + V L + Y K + D+ RE
Sbjct: 422 VDLPTPAIIKPVELWSGKQLFNILLRPHANVRVYVTLTVMEKNYGSK----LDDREREFK 477
Query: 366 TAC 368
T C
Sbjct: 478 TMC 480
>gi|50309797|ref|XP_454912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644047|emb|CAG99999.1| KLLA0E21253p [Kluyveromyces lactis]
Length = 1457
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 75/125 (60%), Positives = 92/125 (73%), Gaps = 7/125 (5%)
Query: 2 IQEDWEWLQLHCALFINSET---SGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRV 57
+ E W++LQL A++INS++ S +P + KSK RG QRLKGKQGRFRGNLSGKRV
Sbjct: 312 MMEQWDYLQLAVAMYINSDSVNPSMLPGSSGTKSKPIRGFCQRLKGKQGRFRGNLSGKRV 371
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---L 114
DF+ RTVISPDPNL I +V +P+ VAKILTYPE+V NK L+QLV+NGP HPG L
Sbjct: 372 DFSGRTVISPDPNLSIDEVAVPDRVAKILTYPEKVTRYNKHKLQQLVINGPKVHPGANYL 431
Query: 115 LRAKE 119
L+ E
Sbjct: 432 LKKNE 436
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE+++ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 714 DVTPGSDLKQKKEQMVESAYAKCDELIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 773
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 774 EVGEVCIRELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 833
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 834 PKNSKTPQSKGFVR 847
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + S+L+F IPPP+IMKP LWTGKQ+FSL++KP+R PV NL K +
Sbjct: 578 LSMMSDSNLQFD-------IPPPSIMKPHYLWTGKQVFSLLIKPSRKSPVVINLDAKNKV 630
Query: 349 Y 349
Y
Sbjct: 631 Y 631
>gi|224003141|ref|XP_002291242.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
gi|220973018|gb|EED91349.1| DNA directed RNA polymerase III, largest subunit [Thalassiosira
pseudonana CCMP1335]
Length = 1422
Score = 145 bits (365), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 72/112 (64%), Positives = 83/112 (74%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ LQ A +IN + G+ M K RGL QRLKGKQGRFRGNLSGKRVDF++
Sbjct: 329 IMEGWDVLQSQVAQYINGDMPGLKKEMGHKP-IRGLCQRLKGKQGRFRGNLSGKRVDFSA 387
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ QVG+P HVAKI+TYPE V N E L+Q VLNGPD HPG
Sbjct: 388 RTVISPDPNLRVDQVGVPVHVAKIMTYPETVSRYNIEKLRQRVLNGPDVHPG 439
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 81/126 (64%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + K +LS GY K E I+ + G L+ +PGC ++LE ++ L +R+ AG+ +
Sbjct: 732 LKKMKYDILSTGYKKAEEAIKKYDEGTLELRPGCDLLQSLEEILNGILGKLREAAGQEAM 791
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L SN P +MA GSKGS +NISQM+ACVGQQA+ G R+ +GF NR+LPHF S P
Sbjct: 792 KALPWSNTPRIMAECGSKGSPLNISQMMACVGQQAVGGMRIQDGFVNRTLPHFTYHSLTP 851
Query: 234 ASKGNV 239
+KG V
Sbjct: 852 PAKGFV 857
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 282 VRSRNGWLSSVLSSSL--RFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVN 339
+ R+ + S + SL F E + +P PAI+KP LWTGKQ+F+ I+KPN+
Sbjct: 575 ITQRDQFFSREMFCSLVSYFGLAEEQIDVPLPAILKPVPLWTGKQVFTCIVKPNKQTTAL 634
Query: 340 ANLKTKGRAY 349
N + K + Y
Sbjct: 635 VNFEMKEKNY 644
>gi|320581578|gb|EFW95798.1| DNA-directed RNA polymerase III subunit, putative [Ogataea
parapolymorpha DL-1]
Length = 1469
Score = 144 bits (364), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 70/117 (59%), Positives = 87/117 (74%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSET---SGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS++ S + KS RGL QRLKGKQGRFRGNLSGKR
Sbjct: 311 LMEQWDYLQLAVAMYINSDSASPSALSGGTSTKSAKPIRGLCQRLKGKQGRFRGNLSGKR 370
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPERV NK L+ L++NGPD HPG
Sbjct: 371 VDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPERVTRYNKAKLQALIINGPDVHPG 427
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/134 (53%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE+L+ Y KC+ I ++G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 713 DVTPGENLKNRKEQLVEIAYRKCDELITLFKTGKLETQPGCNEEQTLEAKIGGLLSKVRE 772
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL SN PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 773 EVGEVCIKELDKSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHF 832
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 833 LKNSKSPQSKGFVR 846
Score = 58.2 bits (139), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
V IPPPAI KP +WTGKQ+FSL+++PNR V NL K + +
Sbjct: 588 VDIPPPAIFKPAFMWTGKQLFSLLIRPNRQSKVVINLDAKNKTFV 632
>gi|260946503|ref|XP_002617549.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
gi|238849403|gb|EEQ38867.1| DNA-directed RNA polymerase III largest subunit [Clavispora
lusitaniae ATCC 42720]
Length = 1491
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KER++ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 747 DVTPGADLKAKKERMVEAAYAKCDELIDLYTKGKLETQPGCNEEQTLEAKIGGLLSKVRE 806
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 807 EVGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 866
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 867 TKMSKTPQSKGFVR 880
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/120 (54%), Positives = 85/120 (70%), Gaps = 8/120 (6%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL--------NMQPKSKSRGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS+++ L + RG QRLKGKQGRFRGNLS
Sbjct: 342 MMEQWDYLQLSVAMYINSDSANPALLPGGMGGSGSKSSKPIRGFCQRLKGKQGRFRGNLS 401
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL+I +V +P+ VAKILTYPE+ N++ L++L+LNGP HPG
Sbjct: 402 GKRVDFSGRTVISPDPNLRIDEVAVPDRVAKILTYPEKCTRYNRQKLQKLILNGPTVHPG 461
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP + KP LWTGKQ+FS++++PN+ V N+ K + +
Sbjct: 624 IPPPTVFKPVMLWTGKQVFSMLIRPNKKSNVVINVDAKNKTF 665
>gi|449540821|gb|EMD31809.1| hypothetical protein CERSUDRAFT_144684 [Ceriporiopsis subvermispora
B]
Length = 1403
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 70/110 (63%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQL A++INSE G+P M + RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWDFLQLSVAMYINSELPGVPTQMGQRP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE VAK+LTYPERV N E L++ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVAKVLTYPERVTAHNIEVLRRAVRNGCDVHPG 410
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + KE ++ + Y+ C+ I + G L+ +PGC E+TLEA+I LS +RD G
Sbjct: 707 PQLSQQKEDMVMKAYNACDDLIMKAKKGLLENKPGCDQEQTLEAMISSILSNVRDQVGNI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PLVMA GSKGS IN+ QM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 767 CMKELSRHNAPLVMATCGSKGSVINVCQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 826
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 827 EPPSKGFVR 835
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 33/45 (73%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+ + + IPPP I KP+ LWTGKQIF+++++PNR V N+++K
Sbjct: 566 DADLKIDIPPPTIWKPQRLWTGKQIFNVLMRPNRSSKVLVNVESK 610
>gi|403416877|emb|CCM03577.1| predicted protein [Fibroporia radiculosa]
Length = 1403
Score = 144 bits (364), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 71/110 (64%), Positives = 83/110 (75%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E W++LQL A++INSE G+P M K RG QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 302 EQWDFLQLSVAMYINSELPGVPSQMGQKP-IRGFCQRLKGKQGRFRGNLSGKRVDFSGRT 360
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V +PE V+KILTYPERV N + LK+ V NG D HPG
Sbjct: 361 VISPDPNLRIDEVAVPERVSKILTYPERVTAHNIDMLKKAVRNGCDVHPG 410
Score = 143 bits (361), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 90/129 (69%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K++L+ Y++C+ I + G L+ +PGC E+TLEA+I LS +RD G+
Sbjct: 707 PKLANEKDKLVETAYAECQDLIMRAKKGLLENKPGCDQEQTLEAMISGVLSKVRDKVGEI 766
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
CL+EL N PL+MA GSKGS IN++QM+ACVGQQ I G RVP+GF +RSLPHF K S+
Sbjct: 767 CLKELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIAGHRVPDGFQDRSLPHFPKKSR 826
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 827 EPPSKGFVR 835
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
F + + IPPP I KP LWTGKQIF+++++PN+ V N+++K
Sbjct: 564 FGDANMQIDIPPPTIWKPVRLWTGKQIFNVLMRPNKSSNVMVNVESK 610
>gi|406607118|emb|CCH41506.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 1457
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE ++ Y+KC+ I+ G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 714 DVTPGVALKNTKEEMVEAAYAKCDELIKLYSEGKLETQPGCNEEQTLEAKIGGLLSKVRE 773
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL SN PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 774 EVGEVCINELDSSNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 833
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 834 PKNSKTPQSKGFVR 847
Score = 141 bits (355), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/127 (55%), Positives = 89/127 (70%), Gaps = 9/127 (7%)
Query: 2 IQEDWEWLQLHCALFINSETS------GIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+ + G + RGL QRLKGKQGRFRGNLSGK
Sbjct: 311 LMEQWDYLQLSVAMYINSDAASPAMLPGASAAAKSAKPIRGLCQRLKGKQGRFRGNLSGK 370
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE NKE L++L+LNGP +HPG
Sbjct: 371 RVDFSGRTVISPDPNLRIDEVAVPDRVAKVLTYPETCTRYNKEKLQRLILNGPTEHPGAN 430
Query: 114 -LLRAKE 119
LL+ E
Sbjct: 431 YLLKKNE 437
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/43 (58%), Positives = 33/43 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPAI KP +WTGKQ+FSL++KPN+ PV NL K +A+T
Sbjct: 591 LPPPAIHKPVYMWTGKQVFSLLIKPNKKSPVVINLDAKNKAFT 633
>gi|45935345|gb|AAS79694.1| RNA polymerase III large subunit [Pinus nigra]
Length = 548
Score = 144 bits (363), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 92/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGY+KC+ +I G+L QPGC++ +TLEA I EL+ IR+
Sbjct: 195 DVQPGARLTAQKEERIREGYNKCDMHIDLYNKGKLTLQPGCNSAQTLEAEITGELNKIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 IAGSVCLRELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
+ PA+KG V
Sbjct: 315 PRNDMTPAAKGFV 327
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ 360
++ +P PAI+KP LWTGKQ+FS++++PN + V NL + Y+ M ++
Sbjct: 73 AIDLPTPAILKPVELWTGKQLFSVLVRPNANMRVFVNLIVMEKNYSKSGETMCRND 128
>gi|326923517|ref|XP_003207982.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Meleagris gallopavo]
Length = 641
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/85 (80%), Positives = 76/85 (89%)
Query: 155 AVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
A+ILKELSVIRDHAG ACL+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RV
Sbjct: 1 ALILKELSVIRDHAGSACLRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRV 60
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV 239
P+GF+NRSLPHF+K SK PA+KG V
Sbjct: 61 PDGFENRSLPHFEKHSKLPAAKGFV 85
>gi|238591374|ref|XP_002392590.1| hypothetical protein MPER_07807 [Moniliophthora perniciosa FA553]
gi|215458856|gb|EEB93520.1| hypothetical protein MPER_07807 [Moniliophthora perniciosa FA553]
Length = 197
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/126 (53%), Positives = 90/126 (71%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K+ L+ + Y++C+ I + G+L+ +PGC E+TLEA+I LS +R+ G+
Sbjct: 50 PELSKKKDILVEKAYAECQDLIAKAKKGKLENKPGCDQEQTLEAMISSVLSKVREEVGQI 109
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++EL N PL+MA GSKGS IN+SQM+ACVGQQ I G RVPNGF +RSLPHF K SK
Sbjct: 110 CMRELSKYNAPLIMATCGSKGSVINVSQMVACVGQQIIAGHRVPNGFQDRSLPHFPKKSK 169
Query: 232 DPASKG 237
+P SKG
Sbjct: 170 EPPSKG 175
>gi|340939410|gb|EGS20032.1| RNA polymerase-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 1541
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 72/116 (62%), Positives = 86/116 (74%), Gaps = 3/116 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E WE+LQL +++NS+ G LN K RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 317 VIMEQWEFLQLQVGMYVNSDVPG--LNQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDF 374
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
+ RTVISPDPNL I QV +P+ VAK LTYPERV+HAN E L+Q V+NGP+ PG +
Sbjct: 375 SGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRQRVINGPNNWPGAM 430
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 86/123 (69%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K +L+ + Y +C+ I G+L+ PGCS EETLE +I LS +R AG C+ L
Sbjct: 727 KAKLVEDAYKRCDELIETYRQGKLEKAPGCSMEETLENMISGILSQVRQQAGNYCVDSLS 786
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QMIACVGQQ I+GKRVP+GF +RSLPHF K ++ P SKG
Sbjct: 787 NNNAPLIMAKSGSKGSDINVAQMIACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKG 846
Query: 238 NVK 240
V+
Sbjct: 847 FVR 849
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 40/50 (80%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
ET + +PPPAIMKP+ LWTGKQIF+++++PN++CPV NL K + ++ K
Sbjct: 588 ETHLDLPPPAIMKPRCLWTGKQIFNVLMRPNKECPVLVNLDAKNKVFSKK 637
>gi|156841103|ref|XP_001643927.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
gi|156114557|gb|EDO16069.1| hypothetical protein Kpol_1016p9 [Vanderwaltozyma polyspora DSM
70294]
Length = 1460
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 71/129 (55%), Positives = 93/129 (72%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + +M P + S RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLSVAMYINSDS--VNPSMMPGASSGGAKAKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+E L+ LV+NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNREKLQALVINGPNVHPG 429
Query: 114 ---LLRAKE 119
+L+A E
Sbjct: 430 ANYILKANE 438
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/133 (52%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD L + KE L+ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 719 PDN--ALKQKKEELVEIAYAKCDELIDLFTKGKLETQPGCNEEQTLEAKIGGLLSKVREE 776
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
G C+ EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 777 VGDICINELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFR 836
Query: 228 KFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 837 KNSKTPQSKGFVR 849
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + S+L+F IPPP I+KP LWTGKQ+FSL++KPN+D PV NL K +
Sbjct: 580 LSMMSDSNLQFD-------IPPPTIIKPYCLWTGKQLFSLLIKPNKDSPVVINLDAKNKV 632
Query: 349 Y 349
+
Sbjct: 633 F 633
>gi|167537656|ref|XP_001750496.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771036|gb|EDQ84710.1| predicted protein [Monosiga brevicollis MX1]
Length = 1414
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 82/112 (73%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I + WE LQ+H AL+ N + G+P +++PK RG QRLKGKQGRFRGNLSGKRV+++
Sbjct: 291 IMQTWEALQVHVALYFNGDLPGLPKDLKPKKAPRGFYQRLKGKQGRFRGNLSGKRVNYSG 350
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN I +V +P HV KILTYPE V+ N + L+ V NGPD +PG
Sbjct: 351 RTVISPDPNASIDEVCVPYHVCKILTYPEMVNDYNIQRLRAAVENGPDNYPG 402
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/126 (53%), Positives = 88/126 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K L+ + KC GYI +SGR++ QPG SAEETLE+ I K+L+ +R+ AG C
Sbjct: 706 LTDEKAVLIKTAFDKCSGYIAEYKSGRIECQPGQSAEETLESFIRKDLNQVREEAGSLCR 765
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L P N P +MA GSKGS IN++QMIA VGQQ +NG RVPNGF++R LPHF +F+K P
Sbjct: 766 KVLSPYNAPKIMAKCGSKGSPINMAQMIALVGQQILNGSRVPNGFEDRPLPHFRRFAKVP 825
Query: 234 ASKGNV 239
+KG V
Sbjct: 826 MAKGFV 831
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 39/60 (65%)
Query: 290 SSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ V+ F + + +P PAI+KP A+WTGKQ+FS++++P++D P +L K +++
Sbjct: 547 AKVMQMVCAFSDGSLKISLPVPAIVKPVAMWTGKQVFSMMMRPSKDDPHQVDLTEKNKSF 606
>gi|45935353|gb|AAS79698.1| RNA polymerase III large subunit [Psilotum nudum]
Length = 549
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/133 (54%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + EGYS C +I G+L QPGC++ +TLE+ I EL+ IR+
Sbjct: 196 DVQPGARLSAKKEERIKEGYSNCNMHIHMYNKGKLTLQPGCNSAQTLESEITGELNKIRE 255
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK CL+ELH N PL+M+ GSKGS INISQMIACVGQQ++ G R PNGF +RSLPHF
Sbjct: 256 VAGKVCLEELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGHRAPNGFIDRSLPHF 315
Query: 227 DKFSKDPASKGNV 239
+ K P +KG V
Sbjct: 316 PRHDKSPQAKGFV 328
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PAI+KP LWTGKQ+FS++++PN V NL + Y+
Sbjct: 74 IDLPTPAILKPVELWTGKQLFSVLVRPNASTRVFVNLVVMEKNYS 118
>gi|150951372|ref|XP_001387687.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
gi|149388539|gb|EAZ63664.2| DNA-directed RNA polymerase III subunit C1 (RPO31) [Scheffersomyces
stipitis CBS 6054]
Length = 1448
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 713 DVTPGFDLRRKKELMVEQAYLKCDELIDLYHRGKLETQPGCNEEQTLEAKISGLLSKVRE 772
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 773 EVGEVCIRELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 832
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 833 TKNSKTPQSKGFVR 846
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/119 (56%), Positives = 86/119 (72%), Gaps = 7/119 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL-------NMQPKSKSRGLIQRLKGKQGRFRGNLSG 54
+ E W++LQL A++INS+++ L + RG QRLKGKQGRFRGNLSG
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALLPSSGGGGSKSSKPIRGFCQRLKGKQGRFRGNLSG 368
Query: 55 KRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
KRVDF+ RTVISPDPNL+I +V +PE VAK+LTYPER N++ L++LV+NGPD HPG
Sbjct: 369 KRVDFSGRTVISPDPNLKIDEVAVPELVAKVLTYPERCTRYNRKKLQRLVVNGPDIHPG 427
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP+I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 590 IPPPSIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKCKTF 631
>gi|449672715|ref|XP_002167919.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC1-like,
partial [Hydra magnipapillata]
Length = 848
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 75/85 (88%)
Query: 155 AVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
A+IL+ELSVIR+H GKACLQELH SN PL+MALSGSKGSFINISQMIACVGQQAI+G R
Sbjct: 219 AIILRELSVIREHCGKACLQELHRSNSPLIMALSGSKGSFINISQMIACVGQQAISGHRT 278
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV 239
P+GF+ RSLPHF K SK PA+KG V
Sbjct: 279 PDGFEGRSLPHFKKHSKIPAAKGFV 303
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 316 PKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
P LWTGKQ+ S++L+PN NL+TKG+ Y+ + V D +
Sbjct: 1 PVELWTGKQVISVMLRPNNLSSTLVNLRTKGKNYSKDEELCVNDSY 46
>gi|297527624|ref|YP_003669648.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
gi|297256540|gb|ADI32749.1| DNA-directed RNA polymerase subunit A' [Staphylothermus hellenicus
DSM 12710]
Length = 886
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 73/130 (56%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E GIP+ K +GL QRLKGK+GRFRGNL GKRVDF
Sbjct: 266 IIEDEWELLQYHVTTYFDNEAPGIPVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPNL I +VG+PE VAKILT PERV N E +++LVLNGPDK PG ++R
Sbjct: 326 SARTVISPDPNLSINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIR 385
Query: 117 AKERLLSEGY 126
R +S Y
Sbjct: 386 PDGRRISLKY 395
Score = 76.6 bits (187), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRD 166
P+ +L E E Y E Y R G L+ +PG + EETLE I+ LS + D
Sbjct: 660 PEAKKRVLEVIEEKKKEVYELIEKYRR----GELEPRPGRTIEETLEDEIIDLLSKKLLD 715
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ SN ++MA +G++G+ +N++QM A +GQQ I G+R+ G+ +R+LPHF
Sbjct: 716 DVADTIIPYFKLSNPVIIMARTGARGNPVNLTQMAALLGQQTIRGRRITRGYMHRTLPHF 775
Query: 227 DKFSKDPASKGNV 239
P ++G V
Sbjct: 776 KPGDLGPEARGFV 788
>gi|345567741|gb|EGX50669.1| hypothetical protein AOL_s00075g95 [Arthrobotrys oligospora ATCC
24927]
Length = 1442
Score = 142 bits (359), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 82/112 (73%), Gaps = 2/112 (1%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WEW+QL A ++NS+ G+ L Q RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 319 LMEQWEWMQLQIAQYVNSDLPGVQL--QGTKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 376
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QV +P VAK LTYPERV N+ L++LV NG DK+PG
Sbjct: 377 RTVISPDPNLSIEQVAVPMLVAKNLTYPERVTDYNRGKLQELVRNGVDKYPG 428
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ + Y +C+ I GRL+ GC E TLE I LS +RD
Sbjct: 713 DVSPGQKLQDLKQMHVMAAYKECDNLIDDFRLGRLEKAAGCDEETTLENKISGVLSKVRD 772
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N PL+MA SGSKGS IN+SQM+ACVGQQ I+GKRVPNGF +RSLPHF
Sbjct: 773 KVGDICMSELSRMNSPLIMANSGSKGSKINVSQMVACVGQQIISGKRVPNGFQDRSLPHF 832
Query: 227 DKFSKDPASKGNVK 240
K SK+P SKG V+
Sbjct: 833 QKNSKEPPSKGFVR 846
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ +PPPA++KP+A+WTGKQ+FS+++KPN+ V NL K R +
Sbjct: 589 IDLPPPAVIKPEAMWTGKQLFSVLIKPNKKSKVVLNLDAKCRDF 632
>gi|255582063|ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis]
gi|223528524|gb|EEF30548.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
communis]
Length = 1383
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ K + +S GY +C+ I G+L +PGC A +TLE+ I ++L+ +R+
Sbjct: 680 DVQPGKKLIDGKGKTISNGYQQCDKLIEQYNEGKLLLKPGCDATQTLESEITEKLNKLRE 739
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C++ELH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF +RSLPHF
Sbjct: 740 EAGDVCMKELHWRNSPLIMSQCGSKGSVINISQMVACVGQQSVGGRRAPDGFIDRSLPHF 799
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 800 PRKSKTPAAKGFV 812
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 84/110 (76%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ LQ AL++NS+ +P N++ G +QRLKGKQGRFRGNLSGKRV+FT RT
Sbjct: 281 DSWDGLQAAVALYMNSDVR-VPNNVEVGKPLSGFVQRLKGKQGRFRGNLSGKRVEFTGRT 339
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I +V IP H+A+IL+YPERV H N E L+QLV NGP K+PG
Sbjct: 340 VISPDPNLKITEVAIPIHMARILSYPERVSHHNIEKLRQLVSNGPQKYPG 389
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERNTA 367
+P PAI+KP LWTGKQ+FS++L+PN + V NL + + Y S K RE+ T
Sbjct: 552 LPTPAILKPIELWTGKQLFSVLLRPNANVRVYVNLIVREKIY----SKPKKGDKREKETM 607
Query: 368 C 368
C
Sbjct: 608 C 608
>gi|358393275|gb|EHK42676.1| hypothetical protein TRIATDRAFT_86460 [Trichoderma atroviride IMI
206040]
Length = 1463
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E WE++QL A+++NS+ G LN KS RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 317 IMEQWEYMQLQIAMYVNSDVPG--LNQPGFGKSIRGFCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QV +P+ VAK LT+PERV N E L+Q +LNGP HPG
Sbjct: 375 GRTVISPDPNLAINQVAVPQLVAKNLTFPERVQSHNLEKLRQCILNGPKVHPG 427
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 89/127 (70%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L R+++RL+ + Y K + I ++G+L+ PGC E+TLE I LS +R AG+ C+
Sbjct: 719 LTRSRDRLVQDAYDKSDALIETFKAGKLEKAPGCDMEQTLEISISGILSKVRQQAGQQCV 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKG IN++QM+ACVGQQ I G+RVP+GF +RSLPHF K ++ P
Sbjct: 779 DTLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQP 838
Query: 234 ASKGNVK 240
ASKG V+
Sbjct: 839 ASKGFVR 845
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 38/47 (80%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
++ +PPP+I+KP+ALWTGKQIF+++++PN++ PV NL + R Y+
Sbjct: 586 VNIDLPPPSIIKPEALWTGKQIFNVLMRPNKESPVLVNLDARCREYS 632
>gi|367004166|ref|XP_003686816.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
gi|357525118|emb|CCE64382.1| hypothetical protein TPHA_0H01760 [Tetrapisispora phaffii CBS 4417]
Length = 1459
Score = 142 bits (358), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 72/128 (56%), Positives = 92/128 (71%), Gaps = 12/128 (9%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-------RGLIQRLKGKQGRFRGNLSG 54
+ E W++LQL A++INS++ + L + P S RG QRLKGKQGRFRGNLSG
Sbjct: 312 MMEHWDYLQLSVAMYINSDS--VNLLVMPGSNGGTKAKPIRGFCQRLKGKQGRFRGNLSG 369
Query: 55 KRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG- 113
KRVDF+ RTVISPDPNL I +V +PE VAK+LTYPE+V NK L++LV+NGP+ HPG
Sbjct: 370 KRVDFSGRTVISPDPNLSIDEVAVPELVAKVLTYPEKVTRYNKTKLQKLVMNGPNVHPGA 429
Query: 114 --LLRAKE 119
LL++ E
Sbjct: 430 NYLLKSNE 437
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+
Sbjct: 716 DVTPGEELKLKKEDLVEIAYKKCDELIIQYNKGELETQPGCNEEQTLEAKIGGLLSKVRE 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 776 EVGDVCINELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 835
Query: 227 DKFSKDPASKGNVK 240
+K SK P SKG V+
Sbjct: 836 EKNSKTPQSKGFVR 849
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + ++L+F IPPPAI KP+ LWTGKQIFSL++KPN++ PV NL K +
Sbjct: 580 LSMMSDANLKFD-------IPPPAIFKPQCLWTGKQIFSLLIKPNKESPVVINLDAKNKV 632
Query: 349 Y 349
Y
Sbjct: 633 Y 633
>gi|46136689|ref|XP_390036.1| hypothetical protein FG09860.1 [Gibberella zeae PH-1]
Length = 2443
Score = 142 bits (357), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 93/140 (66%), Gaps = 12/140 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 1311 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKTTRGFCQRLKGKQGRFRGNLSGKRVDF 1367
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVISPDPNL I QV +PE VAK LTYPERV N E L+Q V NGPD PG R +
Sbjct: 1368 SGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPGAQRVIK 1427
Query: 120 RLLSEGYSKCEGYIRAMESG 139
EG GY+++++ G
Sbjct: 1428 S--DEG-----GYLQSLKFG 1440
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 86/127 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ KERL + Y +C+ I ++G+L+ GC+ E++LE + LS +R AG C+
Sbjct: 1714 LIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYCV 1773
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA SGSKGS +N++QM+A VGQQ I G RV +GF +R+LPHF K ++ P
Sbjct: 1774 ETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQP 1833
Query: 234 ASKGNVK 240
SKG VK
Sbjct: 1834 PSKGFVK 1840
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + +T + +PPPAI+ P++LWTGKQ+F ++++PN+D PV NL K + Y
Sbjct: 1574 MHMMDGKTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTY 1626
>gi|255717220|ref|XP_002554891.1| KLTH0F16236p [Lachancea thermotolerans]
gi|238936274|emb|CAR24454.1| KLTH0F16236p [Lachancea thermotolerans CBS 6340]
Length = 1460
Score = 142 bits (357), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 91/128 (71%), Gaps = 12/128 (9%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-------RGLIQRLKGKQGRFRGNLSG 54
+ E W++LQL A++INS++ + M P + RG QRLKGKQGRFRGNLSG
Sbjct: 312 MMEQWDYLQLAVAMYINSDS--VNPAMMPGGSTGGKTKPIRGFCQRLKGKQGRFRGNLSG 369
Query: 55 KRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG- 113
KRVDF+ RTV+SPDPNL I +V +P+ VAK+LTYPE V NK+ L+QLV+NGP++HPG
Sbjct: 370 KRVDFSGRTVVSPDPNLSIDEVAVPDRVAKVLTYPEMVTRYNKQKLQQLVINGPNEHPGA 429
Query: 114 --LLRAKE 119
LL+ E
Sbjct: 430 NYLLKKDE 437
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE ++ + Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 715 DVTPGFELKNKKEIMVEDAYAKCDALIDLFNKGKLETQPGCNEEQTLEAKIGGLLSKVRE 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N L+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 775 EVGEVCIKELDNLNSCLIMANCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 834
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 835 LKNSKTPQSKGFVR 848
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 33/42 (78%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP+IMKP +WTGKQ+FSL+++PN++ PV NL K + Y
Sbjct: 591 IPPPSIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKVY 632
>gi|357472537|ref|XP_003606553.1| DNA-directed RNA polymerase [Medicago truncatula]
gi|355507608|gb|AES88750.1| DNA-directed RNA polymerase [Medicago truncatula]
Length = 807
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 71/120 (59%), Positives = 85/120 (70%), Gaps = 1/120 (0%)
Query: 1 MIQED-WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
+ Q+D + LQ A +INS+ G P N Q G IQR+KGKQGRFR NLSGKRV++
Sbjct: 62 IFQDDGYLMLQFEVAQYINSDVKGGPYNPQMSKSLTGFIQRIKGKQGRFRSNLSGKRVEY 121
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
T RTVISPDPNL+I +V IP H+A+ILTYPERV H N E L+Q V NGPDK+PG KE
Sbjct: 122 TGRTVISPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARMLKE 181
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 84/122 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ KE + +GY KC+G+I A SG+L+ PGC A +TLE+ I L+ +RD GK C+
Sbjct: 470 LIKGKEETIDDGYKKCDGFIEAFNSGKLELLPGCDAAQTLESKIFGTLNGLRDTTGKVCM 529
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ LH N PL+M+ GSKGS INI QM+ACVGQQ++ G R NGF +R+LPHF K + P
Sbjct: 530 KTLHWRNSPLIMSQCGSKGSPINICQMVACVGQQSVGGCRATNGFIDRNLPHFPKHANTP 589
Query: 234 AS 235
S
Sbjct: 590 DS 591
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
+ +P PAI+KP LW+GKQ+FS++L+P+ + V NL K + Y K + D+ RE
Sbjct: 335 IDLPTPAIIKPVELWSGKQLFSILLRPHANVRVYVNLTVKEKNYGSK----LDDREREFK 390
Query: 366 TAC 368
T C
Sbjct: 391 TMC 393
>gi|149234447|ref|XP_001523103.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
gi|146453212|gb|EDK47468.1| DNA-directed RNA polymerase III largest subunit [Lodderomyces
elongisporus NRRL YB-4239]
Length = 1450
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ EETLEA I LS +R+ G C+
Sbjct: 724 LRQKKELMVEQAYLKCDQLIDLFNRGKLETQPGCNEEETLEAKIGGLLSKVREEVGNECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 784 RELDSLNAPLIMATCGSKGSIVNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 QSKGFVR 850
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 66/122 (54%), Positives = 85/122 (69%), Gaps = 10/122 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL----------NMQPKSKSRGLIQRLKGKQGRFRGN 51
+ E W++LQL A++INS+++ L + RG QRLKGKQGRFRGN
Sbjct: 310 LMEQWDYLQLSVAMYINSDSANPALIPSVGGGGGGGSKSSKPIRGFCQRLKGKQGRFRGN 369
Query: 52 LSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKH 111
LSGKRVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK L+QL++NGPD H
Sbjct: 370 LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKRKLQQLIINGPDHH 429
Query: 112 PG 113
PG
Sbjct: 430 PG 431
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
IPPPAI KP LWTGKQ+FSL++KPN+ V NL K +
Sbjct: 594 IPPPAIFKPVMLWTGKQVFSLLIKPNKQSKVIINLNAKNKT 634
>gi|126465703|ref|YP_001040812.1| DNA-directed RNA polymerase subunit A' [Staphylothermus marinus F1]
gi|126014526|gb|ABN69904.1| DNA-directed RNA polymerase, subunit A' [Staphylothermus marinus
F1]
Length = 886
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 72/130 (55%), Positives = 93/130 (71%), Gaps = 4/130 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E GIP+ K +GL QRLKGK+GRFRGNL GKRVDF
Sbjct: 266 IIEDEWELLQYHVTTYFDNEAPGIPVARHRSGKVLKGLAQRLKGKEGRFRGNLRGKRVDF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+PE VAKILT PERV N E +++LVLNGPDK PG ++R
Sbjct: 326 SARTVISPDPNISINEVGVPEVVAKILTVPERVTPWNIEEMRRLVLNGPDKWPGANYVIR 385
Query: 117 AKERLLSEGY 126
R +S Y
Sbjct: 386 PDGRRISLKY 395
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 72/131 (54%), Gaps = 12/131 (9%)
Query: 117 AKERLLS-------EGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHA 168
AK+R+L E Y E Y R G L+ +PG + EETLE I+ LS + D
Sbjct: 662 AKKRVLEIIEEKKKEVYELIEKYHR----GELEPRPGRTIEETLEDEIIDLLSKKLLDDV 717
Query: 169 GKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK 228
+ SN ++MA +G++G+ IN++QM A +GQQ I G+R+ G+ +R+LPHF
Sbjct: 718 ADTIIPYFKLSNPVIIMARTGARGNPINLTQMAALLGQQTIRGRRITRGYMHRTLPHFKP 777
Query: 229 FSKDPASKGNV 239
P ++G V
Sbjct: 778 GDLGPEARGFV 788
>gi|367030511|ref|XP_003664539.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
gi|347011809|gb|AEO59294.1| hypothetical protein MYCTH_2307483 [Myceliophthora thermophila ATCC
42464]
Length = 1555
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 86/127 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + K RL+ E Y KC+ I G+L+ PGC+ EETLE I LS +R AG C+
Sbjct: 724 LTKHKARLVEEAYKKCDDLIETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGDYCV 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKGS IN++QM+ACVGQQ I GKRVP+GF +RSLPHF K ++ P
Sbjct: 784 NNLSNNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGGKRVPDGFQDRSLPHFHKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 85/115 (73%), Gaps = 5/115 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I E WE+LQL +++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVD
Sbjct: 318 VIMEQWEFLQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVD 374
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F+ RTVISPDPNL I QV +P+ VAK LTYPERV+HAN E L++ V+NGP+ PG
Sbjct: 375 FSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPNIWPG 429
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 38/47 (80%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T + +PPPAI+KP+ALWTGKQIF+++++PN++ PV NL K + Y
Sbjct: 589 DTHLELPPPAILKPRALWTGKQIFNVLMRPNKESPVLVNLDAKNKVY 635
>gi|448115320|ref|XP_004202788.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359383656|emb|CCE79572.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 91/127 (71%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I + G+L+TQPGC+ E+TLEA I LS +R+ G+ C+
Sbjct: 718 LKQKKELMVEQAYLKCDELIDSYNRGKLETQPGCNEEQTLEAKIGGLLSKVREQVGEICI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 KELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSG---IPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+ + +P + KS RG QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTV+SPDPNL+I +V +P+ VAK+LTYPE N++ L++L+LNGP+ +PG
Sbjct: 369 VDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAI KP LWTGKQ+FSL+++PN+ V NL K + +
Sbjct: 588 IPPPAIFKPVMLWTGKQLFSLLIRPNKKSKVLINLDAKNKTF 629
>gi|410079408|ref|XP_003957285.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
gi|372463870|emb|CCF58150.1| hypothetical protein KAFR_0D05030 [Kazachstania africana CBS 2517]
Length = 1462
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/123 (55%), Positives = 86/123 (69%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE L+ Y+KC+ I + G+L+TQPGC+ EETLEA I LS +R+ G C+ EL
Sbjct: 728 KEELVEIAYAKCDDLIDSYNKGKLETQPGCNEEETLEAKIGGLLSKVREEVGDVCINELD 787
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P SKG
Sbjct: 788 NLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTPQSKG 847
Query: 238 NVK 240
V+
Sbjct: 848 FVR 850
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++IN+++ + M P + S RG QRLKGKQGRFRGNLS
Sbjct: 313 MMEHWDYLQLTVAMYINADS--VNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNLS 370
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N++ L++LV+NGP+ HPG
Sbjct: 371 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRKKLQELVMNGPNIHPG 430
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 431 ANYLLKKNE 439
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/42 (64%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAIMKP LWTGKQ+FSL++KPN PV NL K + Y
Sbjct: 593 IPPPAIMKPYYLWTGKQLFSLLIKPNHKSPVVINLDAKNKVY 634
>gi|171677863|ref|XP_001903882.1| hypothetical protein [Podospora anserina S mat+]
gi|170937000|emb|CAP61658.1| unnamed protein product [Podospora anserina S mat+]
Length = 1521
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 83/115 (72%), Gaps = 1/115 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQL +++NS+ G+ + +RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 323 LMEQWEFLQLQVGMYVNSDVPGL-VQQGFGKVTRGFCQRLKGKQGRFRGNLSGKRVDFSG 381
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
RTVISPDPNL I QV +PE VAK LTYPERVH N + LK V NGP ++PG L+
Sbjct: 382 RTVISPDPNLSIEQVAVPERVAKNLTYPERVHANNIQKLKACVRNGPTEYPGALQ 436
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/128 (51%), Positives = 84/128 (65%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L K LL + + C+G+I E+G L+ PGC +ETLE + LS +R AG C
Sbjct: 730 ALTEHKLMLLEKATTVCDGFISQAENGTLEKAPGCDMKETLETKLSGTLSAVRQAAGSYC 789
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
+ L +N PL+MA SGSKGS IN++QMIACVGQQ I GKRV +GF NR+LPHF+K K
Sbjct: 790 TENLSRNNAPLIMAKSGSKGSEINVAQMIACVGQQIIGGKRVADGFQNRTLPHFEKGDKR 849
Query: 233 PASKGNVK 240
A+KG VK
Sbjct: 850 AAAKGFVK 857
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 38/47 (80%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T + +PPPAI+KPKALWTGKQIF+++++PN++ PV NL K + Y
Sbjct: 597 DTYLELPPPAILKPKALWTGKQIFNVMMRPNKESPVLVNLDAKNKVY 643
>gi|448112703|ref|XP_004202165.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
gi|359465154|emb|CCE88859.1| Piso0_001648 [Millerozyma farinosa CBS 7064]
Length = 1454
Score = 141 bits (356), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 711 DVIPGSELKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVRE 770
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 771 QVGEICIKELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 830
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 831 TKNSKTPQSKGFVR 844
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 87/117 (74%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSG---IPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+ + +P + KS RG QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDAANSAFLPSSGGSKSAKPIRGFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTV+SPDPNL+I +V +P+ VAK+LTYPE N++ L++L+LNGP+ +PG
Sbjct: 369 VDFSGRTVVSPDPNLRIDEVAVPDRVAKVLTYPEMCTRYNRKKLQRLILNGPNTYPG 425
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAI KP LWTGKQIFSL+++PN++ V NL K + +
Sbjct: 588 IPPPAIFKPVMLWTGKQIFSLLIRPNKNSKVLINLDAKNKTF 629
>gi|408390218|gb|EKJ69624.1| hypothetical protein FPSE_10220 [Fusarium pseudograminearum CS3096]
Length = 1450
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 77/140 (55%), Positives = 93/140 (66%), Gaps = 12/140 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 318 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKTTRGFCQRLKGKQGRFRGNLSGKRVDF 374
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVISPDPNL I QV +PE VAK LTYPERV N E L+Q V NGPD PG R +
Sbjct: 375 SGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCVKNGPDVWPGAQRVIK 434
Query: 120 RLLSEGYSKCEGYIRAMESG 139
EG GY+++++ G
Sbjct: 435 S--DEG-----GYLQSLKFG 447
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 86/127 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ KERL + Y +C+ I ++G+L+ GC+ E++LE + LS +R AG C+
Sbjct: 721 LIQEKERLAAAAYKQCDDLIETFKAGKLEKAAGCNQEQSLENFMSGILSKVRQQAGSYCV 780
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA SGSKGS +N++QM+A VGQQ I G RV +GF +R+LPHF K ++ P
Sbjct: 781 ETLSRNNAPLVMAKSGSKGSDLNVAQMVALVGQQIIGGARVADGFQDRTLPHFHKNARQP 840
Query: 234 ASKGNVK 240
SKG VK
Sbjct: 841 PSKGFVK 847
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 38/53 (71%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + +T + +PPPAI+ P++LWTGKQ+F ++++PN+D PV NL K + Y
Sbjct: 581 MHMMDGKTHLDLPPPAIIAPQSLWTGKQLFGMLMRPNKDSPVKVNLDAKCKTY 633
>gi|444314063|ref|XP_004177689.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
gi|387510728|emb|CCH58170.1| hypothetical protein TBLA_0A03720 [Tetrapisispora blattae CBS 6284]
Length = 1458
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 73/127 (57%), Positives = 89/127 (70%), Gaps = 10/127 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS------RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS++ PL M S RG QRLKGKQGRFRGNLSGK
Sbjct: 312 MMEHWDYLQLSVAMYINSDSVN-PLLMPGASTGNKVKPIRGFCQRLKGKQGRFRGNLSGK 370
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF+ RTVISPDPNL I +V +P+ VAK+LT+PERV NK L+ LVLNGP+ HPG
Sbjct: 371 RVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPERVTRYNKRKLQALVLNGPNVHPGAN 430
Query: 114 -LLRAKE 119
LL+ E
Sbjct: 431 YLLKKDE 437
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 67/123 (54%), Positives = 85/123 (69%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE L+ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+ EL
Sbjct: 726 KENLVEIAYAKCDELIGLYNQGKLETQPGCNEEQTLEAKISGILSKVREEVGDICINELD 785
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P SKG
Sbjct: 786 NWNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKG 845
Query: 238 NVK 240
V+
Sbjct: 846 FVR 848
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAIMKP LWTGKQ+FSL++KPN + PV N+ K + +
Sbjct: 591 IPPPAIMKPCYLWTGKQLFSLLIKPNSNSPVVINVDAKNKVF 632
>gi|367014307|ref|XP_003681653.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
gi|359749314|emb|CCE92442.1| hypothetical protein TDEL_0E01990 [Torulaspora delbrueckii]
Length = 1460
Score = 141 bits (355), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 92/129 (71%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P + S RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLSVAMYINSDS--VNPAMMPGASSGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N++ L+QL++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRQKLQQLLINGPNVHPG 429
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 430 ANYLLKKDE 438
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ Y+KC+ I + G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKKKKEDMVEFAYAKCDELIDSYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IP PAIMKP LWTGKQ+FSL++KPN+ PV NL K + +
Sbjct: 592 IPAPAIMKPCYLWTGKQVFSLLIKPNKKSPVVINLDAKNKVF 633
>gi|363753734|ref|XP_003647083.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890719|gb|AET40266.1| hypothetical protein Ecym_5525 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1459
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 83/117 (70%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-----RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQ+ A++INS++ L RG QRLKGKQGRFRGNLSGKR
Sbjct: 312 MMEQWDYLQMAVAMYINSDSVNPALMPGGTGGGKTKPIRGFCQRLKGKQGRFRGNLSGKR 371
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL I +V +P+ VAK+LTYPERV NK L+QL++NGP+ HPG
Sbjct: 372 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPERVTRYNKHKLQQLIINGPNVHPG 428
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE ++ Y+KC+ I + G L+TQPGC+ E+TLEA I LS +R+
Sbjct: 715 DVTPGKELKAKKEEMVEIAYAKCDELIDLFKRGELETQPGCNEEQTLEAKIGGLLSKVRE 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 775 EVGEVCIRELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 834
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 835 AKNSKTPQSKGFVR 848
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 32/42 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPAI+KP LWTGKQ+FSL+++PN+ PV NL K + Y
Sbjct: 591 LPPPAIIKPCYLWTGKQVFSLLIRPNKKSPVIINLDAKNKVY 632
>gi|397505658|ref|XP_003823369.1| PREDICTED: disintegrin and metalloproteinase domain-containing
protein 18 [Pan paniscus]
Length = 772
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 71/102 (69%), Positives = 81/102 (79%), Gaps = 1/102 (0%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+G L++ C A+ILKELSVIRDHAG ACL+EL SN PL MAL GSKGSFINI
Sbjct: 395 NGILESNEECDCGNK-NALILKELSVIRDHAGSACLRELDKSNSPLTMALCGSKGSFINI 453
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK PA+KG V
Sbjct: 454 SQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKLPAAKGFV 495
>gi|296243131|ref|YP_003650618.1| DNA-directed RNA polymerase subunit A' [Thermosphaera aggregans DSM
11486]
gi|296095715|gb|ADG91666.1| DNA-directed RNA polymerase, subunit A' [Thermosphaera aggregans
DSM 11486]
Length = 881
Score = 140 bits (354), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 69/130 (53%), Positives = 94/130 (72%), Gaps = 4/130 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++++WE LQ H + ++E GIP+ K+ +G+ QRLKGK+GRFRGNL GKRVDF
Sbjct: 261 IVEDEWELLQYHITTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRGNLRGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTV+SPDPNL I +VG+PE VAKILT PE+V N E +++LVLNGPDK PG ++R
Sbjct: 321 SARTVVSPDPNLSINEVGVPEMVAKILTIPEKVTPWNIEEMRKLVLNGPDKWPGANYIVR 380
Query: 117 AKERLLSEGY 126
R +S Y
Sbjct: 381 PDGRKISLKY 390
Score = 77.0 bits (188), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/168 (30%), Positives = 85/168 (50%), Gaps = 13/168 (7%)
Query: 85 ILTYPERVHHANKEHLKQLVLNGPDKH-----------PGLLRAKER-LLSEGYSKCEGY 132
I Y E + K+ + ++ L +K+ P L R K R ++ E ++ E
Sbjct: 616 IKEYGEDIGRLFKDRVYKMFLRASEKYGLTMGYSHLSLPELAREKIRQIILEKKNRVEEL 675
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHAGKACLQELHPSNGPLVMALSGSK 191
IR G+L +PG + EETLE I+ LS + D +N ++MA +G++
Sbjct: 676 IRIYRQGKLTPRPGKTPEETLEDEIVDLLSKRLLDDVADTITPYFTLTNPVVIMARTGAR 735
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
G+ +N++QM A +GQQ + GKR+ G+ R LPHF + P ++G +
Sbjct: 736 GNPVNLTQMAALLGQQTVRGKRLSRGYLYRPLPHFKQKDIGPEARGFI 783
>gi|367041111|ref|XP_003650936.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
gi|346998197|gb|AEO64600.1| hypothetical protein THITE_2110899 [Thielavia terrestris NRRL 8126]
Length = 1547
Score = 140 bits (354), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 84/115 (73%), Gaps = 5/115 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I E WE+LQL +++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVD
Sbjct: 318 VIMEQWEFLQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVD 374
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F+ RTVISPDPNL I QV +P+ VAK LTYPERV+HAN E L++ V+NGP PG
Sbjct: 375 FSGRTVISPDPNLSIEQVAVPQLVAKNLTYPERVNHANIEKLRERVINGPHIWPG 429
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/123 (52%), Positives = 85/123 (69%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K L+ + Y KC+ I G+L+ PGC+ EETLE +I LS +R AG C+ L
Sbjct: 728 KASLVEDAYKKCDDLIETYRQGKLEKAPGCNLEETLENIISGILSKVRQQAGNYCVDNLS 787
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QM+ACVGQQ I+GKRVP+GF +RSLPHF K ++ P SKG
Sbjct: 788 KNNAPLIMAKSGSKGSEINVAQMVACVGQQIISGKRVPDGFQDRSLPHFHKNARQPPSKG 847
Query: 238 NVK 240
V+
Sbjct: 848 FVR 850
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/50 (52%), Positives = 40/50 (80%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
+T + +PPPAI+KP+ALWTGKQIF+++++PN++ PV NL K +A+ K
Sbjct: 589 DTYLELPPPAIIKPRALWTGKQIFNVMMRPNKESPVLVNLDAKNKAFQKK 638
>gi|116201487|ref|XP_001226555.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
gi|88177146|gb|EAQ84614.1| hypothetical protein CHGG_08628 [Chaetomium globosum CBS 148.51]
Length = 1290
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/115 (60%), Positives = 84/115 (73%), Gaps = 5/115 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I E WE+LQL +++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVD
Sbjct: 188 VIMEQWEFLQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVD 244
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F+ RTVISPDPNL I QV +PE VAK LTYPERV+HAN E L++ V+ GP+ PG
Sbjct: 245 FSGRTVISPDPNLSIEQVAVPELVAKNLTYPERVNHANIEKLRERVITGPNIWPG 299
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 86/127 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K +L+ + Y+KC+ I G+L+ PGC+ EETLE I LS +R AG C+
Sbjct: 594 LTSHKAQLVEDAYNKCDDLIETYRQGKLEKAPGCNLEETLENSISGILSKVRQQAGNYCV 653
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKGS IN++QM+ACVGQQ I GKRVP+GF +RSLPHF K ++ P
Sbjct: 654 GNLSKNNAPLIMAKSGSKGSDINVAQMVACVGQQIIGGKRVPDGFQDRSLPHFHKNARQP 713
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 714 PSKGFVR 720
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 39/47 (82%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T + +PPPAI+KP+ALWTGKQIF+++++PN++ PV NL+ K + +
Sbjct: 459 DTHLELPPPAIIKPRALWTGKQIFNVLMRPNKESPVLVNLEAKNKVF 505
>gi|365984467|ref|XP_003669066.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
gi|343767834|emb|CCD23823.1| hypothetical protein NDAI_0C01620 [Naumovozyma dairenensis CBS 421]
Length = 1460
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 87/127 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYAKCDELIDQFNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 88/120 (73%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P + S RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LT+PE+V N++ L+QL++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNRQKLQQLIINGPNVHPG 429
Score = 68.2 bits (165), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + ++L+F IPPPAIMKP LWTGKQ+FSL++KPN+D PV NL K +
Sbjct: 580 LSMMCDANLQFD-------IPPPAIMKPHYLWTGKQLFSLLIKPNKDSPVVINLDAKNKV 632
Query: 349 Y 349
Y
Sbjct: 633 Y 633
>gi|344229980|gb|EGV61865.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Candida tenuis ATCC 10573]
Length = 1453
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 712 DVTPGSDLKNKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVRE 771
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 772 EVGEVCIKELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 831
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 832 TKNSKTPQSKGFVR 845
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 6/118 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS------RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+ + L S S RG QRLKGKQGRFRGNLSGK
Sbjct: 309 LMEQWDYLQLSVAMYINSDAANPALMPSAGSGSKSTKPIRGFCQRLKGKQGRFRGNLSGK 368
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RVDF+ RTVISPDPNL+I +V +P+ VAKILTYPE+ N+ L++L+L+GPD HPG
Sbjct: 369 RVDFSGRTVISPDPNLKIDEVAVPDRVAKILTYPEKCTRYNRIKLQKLILSGPDVHPG 426
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 41/66 (62%), Gaps = 7/66 (10%)
Query: 284 SRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLK 343
S N L + ++L+F +PPPAI+KP +LWTGKQ+FSL++KPN+ V NL
Sbjct: 572 SVNQLLCMMSDANLQFD-------LPPPAIIKPVSLWTGKQVFSLLIKPNKASNVVINLD 624
Query: 344 TKGRAY 349
K + Y
Sbjct: 625 AKAKTY 630
>gi|342886359|gb|EGU86224.1| hypothetical protein FOXB_03263 [Fusarium oxysporum Fo5176]
Length = 1404
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 76/140 (54%), Positives = 93/140 (66%), Gaps = 12/140 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 272 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKATRGFCQRLKGKQGRFRGNLSGKRVDF 328
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVISPDPNL I QV +P+ VAK LTYPERV N E L+Q V NGPD PG R +
Sbjct: 329 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVQRHNLEKLRQCVKNGPDIWPGAQRVIK 388
Query: 120 RLLSEGYSKCEGYIRAMESG 139
EG GY+++++ G
Sbjct: 389 S--DEG-----GYLQSLKFG 401
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE+L++ Y +C+ I ++G+L+ GC+ E+TLE + LS +R AG C+
Sbjct: 675 LNKEKEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSYCV 734
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKGS IN++QM+A VGQQ I G RV +GF +R+LPHF K ++ P
Sbjct: 735 DTLSRNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQP 794
Query: 234 ASKGNVK 240
SKG VK
Sbjct: 795 PSKGFVK 801
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 40/53 (75%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + +T + +PPPAI+ P++LWTGKQ+FS++++PN+D PV NL K RAY
Sbjct: 535 MHMMDGKTHLDMPPPAIIAPQSLWTGKQLFSMLMRPNKDSPVKVNLDAKCRAY 587
>gi|366996196|ref|XP_003677861.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
gi|342303731|emb|CCC71514.1| hypothetical protein NCAS_0H02040 [Naumovozyma castellii CBS 4309]
Length = 1460
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 87/127 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYAKCDELIDQFHKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 92/129 (71%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P + S RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LT+PE+V NK+ L+QL++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKQKLQQLIINGPNVHPG 429
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 430 ANYLLKKNE 438
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + + +LRF IPPPAIMKP +WTGKQ+FSL+++PN++ PV NL K +
Sbjct: 580 LSMMSNGTLRFD-------IPPPAIMKPYYMWTGKQVFSLLIRPNKESPVVINLDAKNKV 632
Query: 349 Y 349
+
Sbjct: 633 F 633
>gi|448520288|ref|XP_003868270.1| Rpo31 protein [Candida orthopsilosis Co 90-125]
gi|380352609|emb|CCG22836.1| Rpo31 protein [Candida orthopsilosis]
Length = 1443
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/119 (57%), Positives = 86/119 (72%), Gaps = 7/119 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL---NMQPKSKS----RGLIQRLKGKQGRFRGNLSG 54
+ E W++LQL A++INS+ + L SKS RG QRLKGKQGRFRGNLSG
Sbjct: 310 LMEQWDYLQLSVAMYINSDAANPALMSGGGGGGSKSAKPIRGFCQRLKGKQGRFRGNLSG 369
Query: 55 KRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
KRVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L+ L++NGPD HPG
Sbjct: 370 KRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQCLIINGPDVHPG 428
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 721 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 780
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 781 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 840
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 841 QSKGFVR 847
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAIMKP LWTGKQ+FSL++KPNR V NL K + +
Sbjct: 591 IPPPAIMKPVMLWTGKQVFSLLIKPNRQSKVVINLNAKNKTF 632
>gi|323457244|gb|EGB13110.1| hypothetical protein AURANDRAFT_35850 [Aureococcus anophagefferens]
Length = 1398
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/114 (58%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI E W +LQ+ AL++N E G+ P N RGL QRLKGK GRFRGNLSGKRVDF
Sbjct: 285 MIVEGWNFLQVQVALYLNGEVPGLQPRNAPAAKPIRGLCQRLKGKSGRFRGNLSGKRVDF 344
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL++ QVG+P+ VAKI+TYPE+V+ N E L++LV+ G + PG
Sbjct: 345 SARTVISPDPNLRVDQVGVPQEVAKIMTYPEKVNALNLEKLQKLVVAGQKQWPG 398
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 85/128 (66%), Gaps = 1/128 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
+L K +LL EG+++ I A ESG L QPGC A ++LEA + L +R+ AGK
Sbjct: 704 AVLALKAQLLEEGHAEARRKIEAYESGSLALQPGCDALQSLEAELTGLLGKVREQAGKNL 763
Query: 173 L-QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ ++L SN P +MA GSKGS IN+SQMIAC+GQQA++GKR+ NGF R+LPHF+
Sbjct: 764 MTRDLPRSNSPRIMAECGSKGSAINVSQMIACLGQQAVDGKRIQNGFVQRTLPHFEVGEL 823
Query: 232 DPASKGNV 239
P ++G V
Sbjct: 824 SPGARGFV 831
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/28 (67%), Positives = 24/28 (85%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPN 333
V +PPPAI+KP LWTGKQ+FSLI++P
Sbjct: 568 VDVPPPAILKPVRLWTGKQLFSLIVRPT 595
>gi|389860841|ref|YP_006363081.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
gi|388525745|gb|AFK50943.1| DNA-directed RNA polymerase subunit A' [Thermogladius
cellulolyticus 1633]
Length = 880
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 86/114 (75%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E GIP K+ +G+ QRLKGK+GRFRGNL GKRVDF
Sbjct: 260 LIEDEWELLQYHVTTYFDNEAPGIPQAKHRTGKTLKGIAQRLKGKEGRFRGNLRGKRVDF 319
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+PE VAK+LT PE+V N E +++LVLNGPDK PG
Sbjct: 320 SARTVISPDPNLSINEVGVPEVVAKVLTVPEKVTPWNIEEMRKLVLNGPDKWPG 373
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHAGKAC 172
A+ER+ +++ + I +GRLQ +PG + EETLE ++ LS + D
Sbjct: 656 ARERIRSIIADKKREVSRLIEEYRAGRLQPKPGKTVEETLEDEVIDLLSKRLLDEVADVI 715
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
+N +VMA +GS+G+ +N++QM A +GQQ + GKR+ G+ +RSLPHF
Sbjct: 716 TPYFTLANPVIVMARTGSRGNPVNLTQMAALLGQQTVRGKRLTRGYMDRSLPHFKPGDLG 775
Query: 233 PASKGNV 239
P ++G V
Sbjct: 776 PEARGFV 782
>gi|403214358|emb|CCK68859.1| hypothetical protein KNAG_0B04240 [Kazachstania naganishii CBS
8797]
Length = 1455
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 66/123 (53%), Positives = 87/123 (70%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE ++ Y+KC+ I ++G+L+TQPGC+ E+TLEA I LS +R+ G C+ EL
Sbjct: 727 KEEMVRFAYAKCDELIDMFKNGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCINELD 786
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P SKG
Sbjct: 787 NLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFQKNSKTPQSKG 846
Query: 238 NVK 240
V+
Sbjct: 847 FVR 849
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P + S RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGASSGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LT+PE+V NK L+QL++NGP HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNKRKLQQLIINGPTVHPG 429
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 430 ANYLLKKNE 438
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAIMKP LWTGKQ+FSL+++PN+ PV NL K + Y
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIRPNKKSPVVINLDAKNKVY 633
>gi|358385218|gb|EHK22815.1| hypothetical protein TRIVIDRAFT_28982 [Trichoderma virens Gv29-8]
Length = 1465
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E WE+LQL A+++NS+ G LN KS RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 317 IMEQWEYLQLQIAMYVNSDVPG--LNQPGFGKSIRGFCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QV +P+ VAK LT+PERV + N E L+Q +LNGP PG
Sbjct: 375 GRTVISPDPNLGINQVAVPQLVAKNLTFPERVQNQNLEKLRQCILNGPKVWPG 427
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L ++++RL+ + Y K + I ++G+L+ GC E+TLE I LS +R AG+ C+
Sbjct: 719 LTKSRDRLVQDAYDKSDSLIETFKAGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCV 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKG IN++QM+ACVGQQ I G+RVP+GF +RSLPHF K ++ P
Sbjct: 779 DTLSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQP 838
Query: 234 ASKGNVK 240
ASKG V+
Sbjct: 839 ASKGFVR 845
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
T + +PPP+I+KP+ALWTGKQIF+++++PN+ PV NL + R Y+
Sbjct: 586 THLDLPPPSIIKPEALWTGKQIFNVLMRPNKQSPVLVNLDARCREYS 632
>gi|296417677|ref|XP_002838479.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295634418|emb|CAZ82670.1| unnamed protein product [Tuber melanosporum]
Length = 442
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 92/134 (68%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K++L+ + Y++C+ I + G+L+ Q GC E TLE + LS +RD
Sbjct: 175 DVLPGANLRGEKDKLVEQAYNECDALILEFKEGKLEKQAGCDEEVTLENKVQGILSNVRD 234
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL +N PL+MA SGSKGS IN+SQM+ACVGQQ I+GKRVP+GF +RSLPHF
Sbjct: 235 KVGDICMRELSKNNSPLIMANSGSKGSKINVSQMVACVGQQVISGKRVPDGFQDRSLPHF 294
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 295 PKNSKQPPSKGFVR 308
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRD-CPVNANLKTKG 346
+ +P PAI+KP+ LWTGKQIF+ + D CP + L +G
Sbjct: 74 IDLPLPAILKPQRLWTGKQIFNAVPAKAPDMCPNDGWLVIRG 115
>gi|449016275|dbj|BAM79677.1| RNA polymerase III largest subunit [Cyanidioschyzon merolae strain
10D]
Length = 1930
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/110 (60%), Positives = 86/110 (78%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W+ LQL A +I+++ G+P ++ K++ GL QRLKGKQGRFRGNLSGKRVDF++RT
Sbjct: 587 DAWDHLQLAVARYIHADYPGLPASLYYKAQI-GLCQRLKGKQGRFRGNLSGKRVDFSART 645
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I QVG+P +AKILTYPERV N + L++ VL GPD+HPG
Sbjct: 646 VISPDPNLSIDQVGVPLRIAKILTYPERVTPWNIDQLRKSVLRGPDRHPG 695
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 84/128 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L AK + Y++ + I +G ++ +PG + EETLE I + LS +R+HAG+
Sbjct: 989 PALEHAKAVRIRNAYTQVQDAIERYRAGVMRPRPGYTDEETLEWHIHRLLSDLREHAGQV 1048
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
CLQE+ P N ++MA+SG+KGS INISQM+ACVGQQ +NG RV GF R+LPHF + K
Sbjct: 1049 CLQEMAPHNTAMIMAMSGAKGSTINISQMVACVGQQTVNGTRVRAGFHQRTLPHFMRGDK 1108
Query: 232 DPASKGNV 239
P + G V
Sbjct: 1109 SPEAGGFV 1116
>gi|294659690|ref|XP_462102.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
gi|218511816|sp|Q6BI69.2|RPC1_DEBHA RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|199434160|emb|CAG90588.2| DEHA2G12980p [Debaryomyces hansenii CBS767]
Length = 1457
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ + Y KC+ I G L+TQPGC+ E+TLEA I LS +R+
Sbjct: 712 DVIPGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVRE 771
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 772 EVGEICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 831
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 832 TKNSKTPQSKGFVR 845
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 9/127 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL------NMQPKSKSRGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+++ L + RG QRLKGKQGRFRGNLSGK
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGK 368
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ N++ L++L+L+GP+ HPG
Sbjct: 369 RVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGAN 428
Query: 114 -LLRAKE 119
LL+ E
Sbjct: 429 YLLKQNE 435
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAI KP LWTGKQ+FSL++KPN+ V NL K + YT
Sbjct: 589 IPPPAIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTYT 631
>gi|238881190|gb|EEQ44828.1| DNA-directed RNA polymerase III largest subunit [Candida albicans
WO-1]
Length = 1448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNM-----QPKSKSRGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+++ L+ + R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L++LV+NGPD HPG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 588 IPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTF 629
>gi|68481134|ref|XP_715482.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
gi|46437106|gb|EAK96458.1| hypothetical protein CaO19.10615 [Candida albicans SC5314]
Length = 1448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNM-----QPKSKSRGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+++ L+ + R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L++LV+NGPD HPG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 588 IPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTF 629
>gi|58268624|ref|XP_571468.1| DNA-directed RNA polymerase iii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|57227703|gb|AAW44161.1| DNA-directed RNA polymerase iii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1466
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +K+ + + Y +C+ +I + G+L+ PGC E TLE+ I K LS +R+ GK
Sbjct: 721 PILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKI 780
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+QEL N PL+MA GSKGS IN++QM+ACVGQQ I G RV NGF +RSLPHF K SK
Sbjct: 781 CMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSK 840
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 841 NPPSKGFVR 849
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI +WE L AL+INS+ G+ + +P RG +QRLKGKQGRFRGNLSGKRVDF
Sbjct: 311 MISSNWEVLGQAVALYINSQAPGMQTIGSKP---IRGFVQRLKGKQGRFRGNLSGKRVDF 367
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL+I +V +PE VA L+YPERV N + ++Q ++NG HPG
Sbjct: 368 SGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPG 421
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+PPP I KP LWTGKQIF+L+++PN++ V NL+ K R
Sbjct: 591 MPPPTIWKPVRLWTGKQIFNLLMRPNKESKVLVNLEAKCR 630
>gi|68481275|ref|XP_715412.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
gi|46437034|gb|EAK96387.1| hypothetical protein CaO19.3103 [Candida albicans SC5314]
Length = 1448
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNM-----QPKSKSRGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+++ L+ + R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L++LV+NGPD HPG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 588 IPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTF 629
>gi|134113452|ref|XP_774751.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257395|gb|EAL20104.1| hypothetical protein CNBF4300 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 1466
Score = 139 bits (351), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +K+ + + Y +C+ +I + G+L+ PGC E TLE+ I K LS +R+ GK
Sbjct: 721 PILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKI 780
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+QEL N PL+MA GSKGS IN++QM+ACVGQQ I G RV NGF +RSLPHF K SK
Sbjct: 781 CMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSK 840
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 841 NPPSKGFVR 849
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI +WE L AL+INS+ G+ + +P RG +QRLKGKQGRFRGNLSGKRVDF
Sbjct: 311 MISSNWEVLGQAVALYINSQAPGMQTIGSKP---IRGFVQRLKGKQGRFRGNLSGKRVDF 367
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL+I +V +PE VA L+YPERV N + ++Q ++NG HPG
Sbjct: 368 SGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQFMRQAIINGSKLHPG 421
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+PPP I KP LWTGKQIF+L+++PN++ V NL+ K R
Sbjct: 591 MPPPTIWKPVRLWTGKQIFNLLMRPNKESKVLVNLEAKCR 630
>gi|405121486|gb|AFR96255.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1437
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +K+ + + Y +C+ +I + G+L+ PGC E TLE+ I K LS +R+ GK
Sbjct: 721 PILHASKDARVEKAYDECDVFIDLAKKGKLENAPGCDQEATLESKISKTLSDVREAVGKI 780
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+QEL N PL+MA GSKGS IN++QM+ACVGQQ I G RV NGF +RSLPHF K SK
Sbjct: 781 CMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSK 840
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 841 NPPSKGFVR 849
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI +WE L AL+INS+ G+ + +P RG +QRLKGKQGRFRGNLSGKRVDF
Sbjct: 311 MISSNWEVLGQAVALYINSQAPGMQTIGSKP---IRGFVQRLKGKQGRFRGNLSGKRVDF 367
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL+I +V +PE VA L+YPERV N + ++Q ++NG HPG
Sbjct: 368 SGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNIQLMRQAIINGSKLHPG 421
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+PPP I KP LWTGKQIF+L+++PN++ V NL+ K R
Sbjct: 591 MPPPTIWKPVRLWTGKQIFNLLMRPNKESKVLVNLEAKCR 630
>gi|347831184|emb|CCD46881.1| similar to DNA-directed RNA polymerase iii largest subunit
[Botryotinia fuckeliana]
Length = 1442
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E W++LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 317 IMEQWDFLQLQIAMYVNSDVPGL---QQPGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDF 373
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V +P VAK LTYPERV N E L+Q V+NGP+ HPG
Sbjct: 374 SGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPG 427
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L ++K RL++ Y +CE I + ++ L+ G S EETLEA + +LS +R
Sbjct: 715 DVYPSAELNKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRG 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK CL+ L+ S+ PLVMA SGSKGS IN++QM+A VGQQ I G RV GF +R+LPHF
Sbjct: 775 AAGKECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHF 834
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 835 PKHSKQPPAKGFV 847
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+P PAI+KP+ALWTGKQ+FS++++PN+ + N+ K R +
Sbjct: 590 LPDPAILKPQALWTGKQVFSVLMRPNKQDNILVNVDAKCRDFV 632
>gi|302308245|ref|NP_985109.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|299789362|gb|AAS52933.2| AER252Cp [Ashbya gossypii ATCC 10895]
gi|374108334|gb|AEY97241.1| FAER252Cp [Ashbya gossypii FDAG1]
Length = 1459
Score = 139 bits (350), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 94/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPGL-LRA-KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG+ L+A KE ++ Y+KC+ I + G+L+TQPGC+ E+TLEA I LS +R+
Sbjct: 715 DVTPGVELKATKEEMVEIAYAKCDELIDLYKRGKLETQPGCNEEQTLEAKIGGLLSKVRE 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 775 EVGDVCIRELDNLNAPLIMATCGSKGSNLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 834
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 835 PKNSKTPQSKGFVR 848
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 90/126 (71%), Gaps = 8/126 (6%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL----NMQPKSKS-RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQ+ A++INS++ L N K+K RG QRLKGKQGRFRGNLSGKR
Sbjct: 312 MMEQWDYLQMAVAMYINSDSVNPALMPGGNGGGKTKPIRGFCQRLKGKQGRFRGNLSGKR 371
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG--- 113
VDF+ RTVISPDPNL I +V +P+ VAK+LT+PE+V NK L+QL++NG + HPG
Sbjct: 372 VDFSGRTVISPDPNLSIDEVAVPDRVAKVLTFPEKVTRYNKHKLQQLIVNGANVHPGANY 431
Query: 114 LLRAKE 119
LL+ E
Sbjct: 432 LLKKNE 437
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 32/42 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAIM+P LWTGKQ+FSL++KPN+ PV NL K + Y
Sbjct: 591 IPPPAIMRPHYLWTGKQLFSLLIKPNKKSPVIINLDAKNKVY 632
>gi|154300910|ref|XP_001550869.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 1468
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E W++LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 314 IMEQWDFLQLQIAMYVNSDVPGL---QQPGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDF 370
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V +P VAK LTYPERV N E L+Q V+NGP+ HPG
Sbjct: 371 SGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRQCVINGPNVHPG 424
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L ++K RL++ Y +CE I + ++ L+ G S EETLEA + +LS +R
Sbjct: 712 DVYPSAELNKSKARLIAAAYVECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRG 771
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK CL+ L+ S+ PLVMA SGSKGS IN++QM+A VGQQ I G RV GF +R+LPHF
Sbjct: 772 AAGKECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHF 831
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 832 PKHSKQPPAKGFV 844
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+P PAI+KP+ALWTGKQ+FS++++PN+ + N+ K R +
Sbjct: 587 LPDPAILKPQALWTGKQVFSVLMRPNKQDNILVNVDAKCRDFV 629
>gi|344305554|gb|EGW35786.1| DNA-directed RNA polymerase III subunit C1 [Spathaspora
passalidarum NRRL Y-27907]
Length = 1445
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 89/127 (70%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G+ C+
Sbjct: 719 LKQKKELMVEQAYLKCDELIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEECI 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 779 RELDSMNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 838
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 839 QSKGFVR 845
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 6/118 (5%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL--NMQPKSKS----RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+++ L N +KS RG QRLKGKQGRFRGNLSGK
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALLPNAGAGAKSAKPIRGFCQRLKGKQGRFRGNLSGK 368
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ N + L++L+ GPD HPG
Sbjct: 369 RVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNFKKLQKLIRAGPDVHPG 426
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPP I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 589 LPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVIINLDAKNKTF 630
>gi|340519695|gb|EGR49933.1| predicted protein [Trichoderma reesei QM6a]
Length = 1465
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/113 (62%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E WE+LQL A+++NS+ G LN KS RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 317 IMEQWEYLQLQIAMYVNSDVPG--LNQPGFGKSIRGFCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I QV +P+ VAK LT+PERV N E L+Q +LNGP PG
Sbjct: 375 GRTVISPDPNLGINQVAVPQLVAKNLTFPERVQSHNMEKLRQCILNGPKVWPG 427
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 87/127 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L ++++RL+ + Y K + I + G+L+ GC E+TLE I LS +R AG+ C+
Sbjct: 719 LTKSRDRLVQDAYDKSDALIETFKQGKLEKAAGCDMEQTLEISISGILSKVRQQAGQQCV 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L +N PL+MA SGSKG IN++QM+ACVGQQ I G+RVP+GF +RSLPHF K ++ P
Sbjct: 779 DALSRNNAPLIMANSGSKGLHINVAQMVACVGQQIIGGQRVPDGFQDRSLPHFHKNARQP 838
Query: 234 ASKGNVK 240
ASKG V+
Sbjct: 839 ASKGFVR 845
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 37/47 (78%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
T + +PPP+I+KP+ALWTGKQIF+++++PN+ PV NL + R Y+
Sbjct: 586 THIDLPPPSIIKPEALWTGKQIFNVLMRPNKQSPVLVNLDARCREYS 632
>gi|241955144|ref|XP_002420293.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223643634|emb|CAX42517.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 1448
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 86/117 (73%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNM-----QPKSKSRGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+++ L+ + R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L++L++NGPD HPG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLIVNGPDIHPG 425
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 588 IPPPTIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTF 629
>gi|321260548|ref|XP_003194994.1| DNA-directed RNA polymerase III largest subunit [Cryptococcus
gattii WM276]
gi|317461466|gb|ADV23207.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1463
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +K+ + + Y +C+ +I + G+L+ PGC E TLE+ I K LS +R+ GK
Sbjct: 721 PILHASKDARVEKAYGECDVFIDLAKRGKLENAPGCDQEATLESKISKTLSDVREAVGKI 780
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+QEL N PL+MA GSKGS IN++QM+ACVGQQ I G RV NGF +RSLPHF K SK
Sbjct: 781 CMQELSRHNAPLIMATCGSKGSVINVAQMVACVGQQIIGGSRVRNGFQDRSLPHFRKKSK 840
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 841 NPPSKGFVR 849
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 80/114 (70%), Gaps = 4/114 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI +WE L AL+INS+ G+ + +P RG +QRLKGKQGRFRGNLSGKRVDF
Sbjct: 311 MISSNWEVLGQAVALYINSQAPGMQTIGSKP---IRGFVQRLKGKQGRFRGNLSGKRVDF 367
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL+I +V +PE VA L+YPERV N + ++Q ++NG HPG
Sbjct: 368 SGRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVTDYNLQLMRQAIINGSKLHPG 421
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 30/40 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+PPP I KP LWTGKQIF+L+++PN++ V NL+ K R
Sbjct: 591 MPPPTIWKPVRLWTGKQIFNLLMRPNKESKVLVNLEAKCR 630
>gi|218884685|ref|YP_002429067.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
gi|218766301|gb|ACL11700.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus
kamchatkensis 1221n]
Length = 886
Score = 139 bits (349), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E G+P+ K+ +G+ QRLKGK+GRFR NL GKRVDF
Sbjct: 266 IIEDEWELLQYHITTYFDNEVPGLPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP+L I +VG+PE VAKILT PERV N E +++LVLNGP+K PG ++R
Sbjct: 326 SARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIVR 385
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R +S + + ++ESG
Sbjct: 386 PDGRKISLKFVDRKAAAESLESG 408
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHAGKACLQELHPSNGPLVMA 186
+ E I + G L +PG + EETLE I+ LS + D + N ++MA
Sbjct: 676 EVEELISKYKRGELLARPGKTVEETLEDEIIDILSKKLLDSVAEVITPYFTLVNPVVIMA 735
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+G++G+ +N++QM A +GQQ + GKR+ G+ R+L HF P ++G +
Sbjct: 736 RTGARGNPVNLTQMAALLGQQTVRGKRLTRGYLGRALSHFKPEDLGPEARGFI 788
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ALWTGKQ+ SL L
Sbjct: 538 LPEPAILKPRALWTGKQLVSLFL 560
>gi|254584114|ref|XP_002497625.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
gi|238940518|emb|CAR28692.1| ZYRO0F09856p [Zygosaccharomyces rouxii]
Length = 1458
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 91/128 (71%), Gaps = 13/128 (10%)
Query: 2 IQEDWEWLQLHCALFINSET-------SGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSG 54
+ E W++LQL A++INS++ G ++P RG QRLKGKQGRFRGNLSG
Sbjct: 312 MMEHWDYLQLAVAMYINSDSVNPAILSGGTGGKVKP---IRGFCQRLKGKQGRFRGNLSG 368
Query: 55 KRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG- 113
KRVDF+ RTVISPDPNL + +V +P+ VAK+LTYPERV NK L+QLV+NGP+++PG
Sbjct: 369 KRVDFSGRTVISPDPNLSVDEVAVPDRVAKVLTYPERVTRYNKGKLQQLVVNGPNEYPGA 428
Query: 114 --LLRAKE 119
LL+ E
Sbjct: 429 NYLLKKDE 436
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 64/120 (53%), Positives = 84/120 (70%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G+ C+ EL N
Sbjct: 728 MVESAYAKCDELIDLFSKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCINELDNMN 787
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P SKG V+
Sbjct: 788 APLIMATCGSKGSTLNVSQMVAVVGQQIISGSRVPDGFQDRSLPHFPKNSKTPQSKGFVR 847
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/42 (59%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP LWTGKQIFSL+++PN+ PV NL K + Y
Sbjct: 590 IPPPTIWKPCYLWTGKQIFSLLIRPNKKSPVVLNLDAKNKVY 631
>gi|255722720|ref|XP_002546294.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
gi|240130811|gb|EER30373.1| DNA-directed RNA polymerase III largest subunit [Candida tropicalis
MYA-3404]
Length = 1159
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 89/127 (70%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G+ C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGEVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 85/117 (72%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNM-----QPKSKSRGLIQRLKGKQGRFRGNLSGKR 56
+ E W+++QL A++INS+++ L+ + R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYMQLSVAMYINSDSANPALSAGGGGAKASKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ N++ L++LV NGPD +PG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQRLVYNGPDTYPG 425
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAI KP LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 588 IPPPAIFKPVMLWTGKQVFSLLIKPNKQSKVVINLDAKNKTF 629
>gi|50293727|ref|XP_449275.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528588|emb|CAG62249.1| unnamed protein product [Candida glabrata]
Length = 1459
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 87/127 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y+KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEDLVEIAYAKCDELIDLYNKGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 90/129 (69%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQ+ A++INS++ I M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQMTVAMYINSDS--INPAMLPGSSTGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LT+PE+V N + L+QLV NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPQLVAKVLTFPEKVTRYNIKKLRQLVQNGPNVHPG 429
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 430 ANYLLKKNE 438
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 40/61 (65%), Gaps = 7/61 (11%)
Query: 289 LSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
LS + SL+F IPPPAIMKP LWTGKQ+FSL++KPN++ PV NL K +
Sbjct: 580 LSMMSDGSLQFD-------IPPPAIMKPCYLWTGKQVFSLLIKPNKNSPVKINLDAKNKV 632
Query: 349 Y 349
Y
Sbjct: 633 Y 633
>gi|354544265|emb|CCE40988.1| hypothetical protein CPAR2_110260 [Candida parapsilosis]
Length = 1446
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 724 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 784 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 QSKGFVR 850
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 65/122 (53%), Positives = 83/122 (68%), Gaps = 10/122 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----------RGLIQRLKGKQGRFRGN 51
+ E W++LQL A++INS+ + L RG QRLKGKQGRFRGN
Sbjct: 310 LMEQWDYLQLSVAMYINSDAANPALMSGGGGGGGSGSKSAKPIRGFCQRLKGKQGRFRGN 369
Query: 52 LSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKH 111
LSGKRVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L+ L++NGPD H
Sbjct: 370 LSGKRVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQGLIINGPDVH 429
Query: 112 PG 113
PG
Sbjct: 430 PG 431
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 30/42 (71%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I+KP LWTGKQ+FSL++KPNR V NL K + +
Sbjct: 594 IPPPTIVKPIMLWTGKQVFSLLIKPNRHSKVVINLNAKNKTF 635
>gi|300707342|ref|XP_002995883.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
gi|239605116|gb|EEQ82212.1| hypothetical protein NCER_101107 [Nosema ceranae BRL01]
Length = 1335
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I +DWE LQL CAL +NS+ I + QP +G++QRLKGK GRFR NLSGKRVDF+
Sbjct: 308 IINDDWESLQLQCALMVNSDLPQINVQSQP---IKGIVQRLKGKSGRFRCNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISP+PNL I QV +PE +AKILT PE+V NK L+ LV NGP +PG
Sbjct: 365 GRTVISPNPNLSIDQVDVPEFMAKILTIPEKVTKFNKSRLQNLVKNGPKSYPG 417
Score = 112 bits (281), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 81/134 (60%), Gaps = 11/134 (8%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K ++ +GY KC+ I+ + ++ET E I L+ IR+
Sbjct: 691 DVLPGSLLQKKKTEVVHKGYEKCKEIIKENDE---------KSKETAEMEISFTLNKIRE 741
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N P++M GSKGS IN+SQMIACVGQQ I+GKR+PNG NR+LPHF
Sbjct: 742 ECGSICINELSYYNSPIIMQACGSKGSKINVSQMIACVGQQIISGKRIPNGMLNRTLPHF 801
Query: 227 DKFSKDPASKGNVK 240
KFS P SKG V+
Sbjct: 802 AKFSITPESKGFVE 815
>gi|401623626|gb|EJS41719.1| rpo31p [Saccharomyces arboricola H-6]
Length = 1460
Score = 138 bits (348), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 70/129 (54%), Positives = 91/129 (70%), Gaps = 13/129 (10%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++LV+NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELVVNGPNVHPG 429
Query: 114 ---LLRAKE 119
LL+ E
Sbjct: 430 ANYLLKKNE 438
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYRKCDELITEFNRGELETQPGCNEEQTLEAKIGGFLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>gi|353234990|emb|CCA67009.1| probable RPO31-DNA-directed RNA polymerase III, 160 KD subunit
[Piriformospora indica DSM 11827]
Length = 1371
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE + Y C+ I + G+L +PGC+ E+TLEA+I LS +R
Sbjct: 701 DVIPGSDLRTQKEGKVEAAYQDCQELIAKAKLGKLDNKPGCNQEQTLEAMISDVLSKVRG 760
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+QEL N PL+MA GSKGS +N+SQM+ACVGQQ I G RVP+GF +RSLPHF
Sbjct: 761 DVGSICMQELSRHNAPLIMATCGSKGSTVNVSQMVACVGQQIIAGHRVPDGFQDRSLPHF 820
Query: 227 DKFSKDPASKGNVK 240
K SKDP SKG V+
Sbjct: 821 HKRSKDPPSKGFVR 834
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/113 (64%), Positives = 83/113 (73%), Gaps = 5/113 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E WE+LQ AL+INS+ GI Q SK RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMELWEFLQHSVALYINSDAPGI---QQSDSKPLRGFCQRLKGKQGRFRGNLSGKRVDFS 356
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V IPE VA+ILTYP +V N E L+Q VL GPDK PG
Sbjct: 357 GRTVISPDPNLRIDEVAIPEKVARILTYPAKVTVHNLEQLRQAVLRGPDK-PG 408
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 34/49 (69%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ ++ + IPPP I KPK LWTGKQ+F ++++P+R NL+T+ + Y
Sbjct: 565 DAQSHIDIPPPTIWKPKQLWTGKQVFGVLMRPSRKSRSFVNLETRCQTY 613
>gi|365763066|gb|EHN04597.1| Rpo31p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1460
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 ZSKGFVR 849
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>gi|190407445|gb|EDV10712.1| DNA-directed RNA polymerase III largest subunit [Saccharomyces
cerevisiae RM11-1a]
gi|207341165|gb|EDZ69295.1| YOR116Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259149599|emb|CAY86403.1| Rpo31p [Saccharomyces cerevisiae EC1118]
gi|323331486|gb|EGA72901.1| Rpo31p [Saccharomyces cerevisiae AWRI796]
gi|323352093|gb|EGA84630.1| Rpo31p [Saccharomyces cerevisiae VL3]
Length = 1460
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>gi|256272995|gb|EEU07959.1| Rpo31p [Saccharomyces cerevisiae JAY291]
gi|349581277|dbj|GAA26435.1| K7_Rpo31p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1460
Score = 138 bits (347), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYRKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>gi|6324690|ref|NP_014759.1| Rpo31p [Saccharomyces cerevisiae S288c]
gi|133356|sp|P04051.1|RPC1_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|4400|emb|CAA26905.1| RNA polymerase III largest subunit [Saccharomyces cerevisiae]
gi|1050828|emb|CAA62123.1| ORF O3254 [Saccharomyces cerevisiae]
gi|1164961|emb|CAA64036.1| YOR3254c [Saccharomyces cerevisiae]
gi|1420309|emb|CAA99314.1| RPO31 [Saccharomyces cerevisiae]
gi|151945738|gb|EDN63979.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|285814998|tpg|DAA10891.1| TPA: Rpo31p [Saccharomyces cerevisiae S288c]
gi|392296445|gb|EIW07547.1| Rpo31p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1460
Score = 137 bits (346), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>gi|320101549|ref|YP_004177141.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus mucosus DSM
2162]
gi|319753901|gb|ADV65659.1| DNA-directed RNA polymerase, subunit A' [Desulfurococcus mucosus
DSM 2162]
Length = 885
Score = 137 bits (346), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 98/143 (68%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E GIP+ K+ +G+ QRLKGK+GRFR NL GKRVDF
Sbjct: 265 IIEDEWELLQYHVTTYFDNEAPGIPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTV+SPDP+L I +VG+PE VA+ILT PERV N E +++LVLNGP+K PG ++R
Sbjct: 325 SARTVVSPDPSLSINEVGVPEDVARILTVPERVTPWNIEEMRRLVLNGPEKWPGANYVVR 384
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R +S + + A+E G
Sbjct: 385 PDGRKISLKFVDRKAAAEALEPG 407
Score = 73.6 bits (179), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 68/125 (54%), Gaps = 2/125 (1%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHAGKACLQ 174
R +E +L E + E I G LQ +PG + EETLE I+ LS + D +
Sbjct: 664 RLREIIL-EKKREVEELISKYRRGELQARPGKTPEETLEDEIIDTLSKKLLDSVAEVITP 722
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
N +VMA +G++G+ +N++QM A +GQQ + GKR+ G+ R+LPHF P
Sbjct: 723 YFTLVNPVVVMARTGARGNPVNLTQMAALLGQQTVRGKRLTRGYLGRALPHFKPEDLGPE 782
Query: 235 SKGNV 239
++G +
Sbjct: 783 ARGFI 787
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KP+ LWTGKQ+ SL L
Sbjct: 537 IPEPAILKPRELWTGKQLVSLFL 559
>gi|156043073|ref|XP_001588093.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
gi|154694927|gb|EDN94665.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1459
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E W++LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 317 IMEQWDFLQLQIAMYVNSDVPGL---QQPGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDF 373
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V +P VAK LTYPERV N E L++ V+NGP+ HPG
Sbjct: 374 SGRTVISPDPNLGIDEVAVPILVAKNLTYPERVQRQNIEKLRKCVINGPNVHPG 427
Score = 128 bits (321), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L ++K RL++ Y++CE I + ++ L+ G S EETLEA + +LS +R
Sbjct: 715 DVYPSEELNKSKARLIAAAYAECEQLIESFKNNTLEKSTGLSMEETLEAKLSGKLSQVRG 774
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK CL+ L+ S+ PLVMA SGSKGS IN++QM+A VGQQ I G RV GF +R+LPHF
Sbjct: 775 AAGKECLRTLYASSSPLVMANSGSKGSAINVAQMVALVGQQIIGGSRVQEGFQDRTLPHF 834
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 835 PKHSKQPPAKGFV 847
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+PPPAI+KP+ALWTGKQ+FS++++PN+ + N+ K R +
Sbjct: 590 LPPPAILKPQALWTGKQVFSILMRPNKQDNILVNVDAKCRDFV 632
>gi|390939171|ref|YP_006402909.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
gi|390192278|gb|AFL67334.1| DNA-directed RNA polymerase subunit A' [Desulfurococcus fermentans
DSM 16532]
Length = 886
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 69/143 (48%), Positives = 98/143 (68%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+++WE LQ H + ++E G+P+ K+ +G+ QRLKGK+GRFR NL GKRVDF
Sbjct: 266 IIEDEWELLQYHITTYFDNEVPGVPVAKHRSGKTLKGIAQRLKGKEGRFRNNLRGKRVDF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP+L I +VG+PE VAKILT PERV N E +++LVLNGP+K PG ++R
Sbjct: 326 SARTVISPDPSLSINEVGVPEDVAKILTIPERVTPWNIEEMRKLVLNGPEKWPGANYIVR 385
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R +S + + ++E G
Sbjct: 386 PDGRKISLKFVDRKAAAESLEPG 408
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 61/113 (53%), Gaps = 1/113 (0%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV-IRDHAGKACLQELHPSNGPLVMA 186
+ E I G L +PG + +ETLE I+ LS + D + N ++MA
Sbjct: 676 EVEELISKYRRGELLARPGKTVKETLEDEIIDILSKKLLDSVAEVITPYFTLVNPVVIMA 735
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+G++G+ +N++QM A +GQQ + GKR+ G+ R+LPHF P ++G +
Sbjct: 736 RTGARGNPVNLTQMAALLGQQTVRGKRLTRGYLGRALPHFKPEDLGPEARGFI 788
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ALWTGKQ+ SL L
Sbjct: 538 LPEPAILKPRALWTGKQLVSLFL 560
>gi|389626659|ref|XP_003710983.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
70-15]
gi|351650512|gb|EHA58371.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
70-15]
gi|440463479|gb|ELQ33059.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
Y34]
gi|440481206|gb|ELQ61814.1| DNA-directed RNA polymerase III subunit RPC1 [Magnaporthe oryzae
P131]
Length = 1456
Score = 137 bits (345), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NSE G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 318 IMEQWEFLQLQIAIYVNSEVPGLG---QPGFGKMTRGFCQRLKGKQGRFRGNLSGKRVDF 374
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL I QV IP VAK LTYPERV+H N E L++ V NGP PG
Sbjct: 375 SGRTVIGPDPNLAIDQVAIPILVAKNLTYPERVNHINIEKLRECVRNGPTVWPG 428
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 85/126 (67%), Gaps = 1/126 (0%)
Query: 115 LRA-KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LRA KE L++ +C+ I ++G+LQ GC E+TLE I LS +R AG C+
Sbjct: 723 LRAEKEVLVANANRQCDELIETFKAGKLQKAAGCDLEQTLENSISGLLSKVRQLAGAKCV 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K S+ P
Sbjct: 783 ETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFHKNSRQP 842
Query: 234 ASKGNV 239
SKG V
Sbjct: 843 PSKGFV 848
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPAI+KP+ALWTGKQ+FS++L+PN++ PV NL K R Y
Sbjct: 594 LPPPAILKPRALWTGKQVFSMMLRPNKESPVKINLDAKCREY 635
>gi|302914119|ref|XP_003051073.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
77-13-4]
gi|256732011|gb|EEU45360.1| hypothetical protein NECHADRAFT_41824 [Nectria haematococca mpVI
77-13-4]
Length = 1449
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/118 (59%), Positives = 81/118 (68%), Gaps = 5/118 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 318 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKATRGFCQRLKGKQGRFRGNLSGKRVDF 374
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
+ RTVISPDPNL I QV +PE VAK LTYPERV N E L+Q + NG D PG R
Sbjct: 375 SGRTVISPDPNLGIDQVAVPELVAKNLTYPERVQRHNIEKLRQCIKNGVDVWPGAQRV 432
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 83/123 (67%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE+L++ Y +C+ I ++G+L+ GC+ E+TLE + LS +R AG C+ L
Sbjct: 725 KEKLVAVAYKQCDDLIETFKAGKLEKAAGCNQEQTLENSMSGILSKVRQQAGSYCVDTLS 784
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QM+A VGQQ I G RV +GF +R+LPHF K ++ P SKG
Sbjct: 785 RNNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGSRVADGFQDRTLPHFHKNARQPPSKG 844
Query: 238 NVK 240
VK
Sbjct: 845 FVK 847
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 39/53 (73%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ + +T + +PPPAI+ P+ALWTGKQ+FS++++PN+D V NL K RAY
Sbjct: 581 MHMMDGKTHLDMPPPAIIAPQALWTGKQLFSMLMRPNKDSKVKVNLDAKCRAY 633
>gi|380495147|emb|CCF32618.1| RNA polymerase Rpb1 [Colletotrichum higginsianum]
Length = 1456
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 70/114 (61%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 317 IMEQWEYLQLQVAMYVNSDVPGL---QQPGFGKAVRGFCQRLKGKQGRFRGNLSGKRVDF 373
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +P+ VAK LTYPERV N E LK+ V NGP PG
Sbjct: 374 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIEKLKECVRNGPSIWPG 427
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K L+ + + I + +L+ GCS E+TLE I LS +R AG C+
Sbjct: 720 LLDKKRTLVKNASIEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKLRTQAGSHCI 779
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA GSKGS IN++QM+A VGQQ I GKRV +GF +R+LPHF K + P
Sbjct: 780 ETLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQP 839
Query: 234 ASKGNVKFLRYGNRL 248
SKG V+ Y L
Sbjct: 840 PSKGFVENSFYSGLL 854
Score = 68.9 bits (167), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPA++KPKALWTGKQ+FS++++PN+D PV NL K R Y
Sbjct: 591 LPPPAVLKPKALWTGKQVFSMMMRPNKDSPVKINLDAKCREY 632
>gi|320592285|gb|EFX04724.1| DNA-directed RNA polymerase 3 largest [Grosmannia clavigera kw1407]
Length = 1390
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/112 (60%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQ A++INSE G+ K RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 265 LMEQWEFLQFQLAMYINSELPGLTAARHGKP-IRGFSQRLKGKQGRFRGNLSGKRVDFSG 323
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P VAK L+YPERV+H N L+ LVLNGP + PG
Sbjct: 324 RTVISPDPNLAINEVAVPVLVAKNLSYPERVNHINIRKLRNLVLNGPTQWPG 375
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 85/135 (62%), Gaps = 1/135 (0%)
Query: 115 LRAKERLL-SEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LR K ++L E KC+ I +G+L+ GC+ ++TLE I LS +R AG CL
Sbjct: 668 LREKIKILVREANLKCDELIHKFNTGKLEKSAGCNLDQTLENSISGVLSKVRSAAGDLCL 727
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA SGSKG IN++QM+A VGQQ I G+RVPNGF +RSLPHF K ++P
Sbjct: 728 ETLSKHNAPLTMATSGSKGLAINVAQMVAVVGQQIIGGQRVPNGFQDRSLPHFPKNVRNP 787
Query: 234 ASKGNVKFLRYGNRL 248
ASKG V+ Y L
Sbjct: 788 ASKGFVQNSFYSGLL 802
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPPAI+KP+ALWTGKQ+F+++++PN+ V NL K +AY
Sbjct: 539 IPPPAILKPQALWTGKQVFNIMMRPNKSSKVLVNLDAKCKAY 580
>gi|336260159|ref|XP_003344876.1| hypothetical protein SMAC_06162 [Sordaria macrospora k-hell]
gi|380089075|emb|CCC13019.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 1474
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE++QL +++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 316 IMEQWEFIQLQVGMYVNSDVPGL---YQPGFGKPIRGFCQRLKGKQGRFRGNLSGKRVDF 372
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +PE VAK LTYPERV+ N E L++ V+NGP PG
Sbjct: 373 SGRTVISPDPNLGIDQVAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPG 426
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 100/164 (60%), Gaps = 3/164 (1%)
Query: 79 PEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAM 136
PEH A+ + ++ A L+ + D +P L K +L+++ Y+ C+ I
Sbjct: 646 PEHAAQAMNRLAKLC-ARTLTLRGFSIGVGDVYPSKDLTEHKAKLVADAYALCDDLIAQF 704
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+SGRL+ PGC+ EETLE I LS +R AG C+ L +N PL+MA SGSKGS IN
Sbjct: 705 KSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLSRNNSPLIMAKSGSKGSDIN 764
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++QM+A VGQQ I GKRV +GF +R+L HF K ++ P SKG V+
Sbjct: 765 VAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSKGFVR 808
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
ET + +PPP I+KP +WTGKQIF+++++PN+ PV NL+ K + Y K
Sbjct: 568 ETHLDLPPPTIIKPVEMWTGKQIFNVLMRPNKQSPVLVNLEAKNKVYKAK 617
>gi|358060144|dbj|GAA94203.1| hypothetical protein E5Q_00851 [Mixia osmundae IAM 14324]
Length = 1436
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 83/113 (73%), Gaps = 2/113 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E W++LQ A +INS+ + ++ Q RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 331 VFMEQWDFLQHAVATYINSDVNNNTISGQ--KPMRGLCQRLKGKQGRFRGNLSGKRVDFS 388
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVISPDPNL+I +V +PE VAKILTYPERV N E L++ V NG + HPG
Sbjct: 389 ARTVISPDPNLRIDEVAVPEKVAKILTYPERVTSHNLEQLRKAVRNGKEVHPG 441
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 85/134 (63%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ + + Y + I G+L+ GC ++TLEA I LS +RD
Sbjct: 727 DVTPGDKLRDEKDDRIRKAYEESNLLITQAAHGKLENAAGCDQDQTLEASISGVLSRVRD 786
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA+ GSKGS IN+ QM+ACVGQQ NGKRV +GF NRSLPH+
Sbjct: 787 KVGEICMTELSRNNAPLIMAICGSKGSKINVCQMVACVGQQITNGKRVADGFINRSLPHY 846
Query: 227 DKFSKDPASKGNVK 240
K SK+P SKG V+
Sbjct: 847 LKKSKNPPSKGFVR 860
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ E + +PPP I++PK LWTGKQ+FS++++P+ + NL+ K R +
Sbjct: 597 DAEGDLELPPPTILRPKQLWTGKQVFSVLMRPSSRSSICVNLEAKCRTF 645
>gi|400602522|gb|EJP70124.1| DNA-directed RNA polymerase III subunit RPC1 [Beauveria bassiana
ARSEF 2860]
Length = 1443
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 79/114 (69%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 316 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKAMRGFCQRLKGKQGRFRGNLSGKRVDF 372
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V IP+ VAK LTYPERV N L+Q V NGPD PG
Sbjct: 373 SGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKLRQCVKNGPDVWPG 426
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 64/122 (52%), Positives = 87/122 (71%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
ERL+S Y++C+ I + ++G+L+ PGC+ E+TLE I LS +R AG C+ L
Sbjct: 724 ERLVSIAYAQCDDLIESFKAGKLEKSPGCNLEQTLENSISGILSKVRQQAGDYCVDTLSR 783
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
+N PL+MA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K ++ P SKG
Sbjct: 784 NNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPPSKGF 843
Query: 239 VK 240
VK
Sbjct: 844 VK 845
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 36/52 (69%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
E T +PPP I+ P ALWTGKQ+F+++++PN++ + N ++K + ++ K
Sbjct: 583 ETNTRFDLPPPTIIAPVALWTGKQLFNVMMRPNKESKIRINFESKCKTFSGK 634
>gi|429851154|gb|ELA26368.1| DNA-directed RNA polymerase iii largest [Colletotrichum
gloeosporioides Nara gc5]
Length = 1456
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 317 IMEQWEYLQLQVAMYVNSDVPGL---QQPGFGKAVRGFCQRLKGKQGRFRGNLSGKRVDF 373
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +P+ VAK LTYPERV N + LK+ V NGP+ PG
Sbjct: 374 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIKKLKECVRNGPNIWPG 427
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 80/126 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K +++ + + I + G+L+ GCS EETLE I LS +R AG C+
Sbjct: 720 LLEKKSKMIQDANKDVDELIDKYKKGKLEKATGCSMEETLENSISGLLSKVRTQAGSHCI 779
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA SGSKGS IN++QM+A VGQQ I GKRV +GF +R+LPHF K + P
Sbjct: 780 ETLSRNNAPLVMAKSGSKGSEINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQP 839
Query: 234 ASKGNV 239
SKG V
Sbjct: 840 PSKGFV 845
Score = 68.6 bits (166), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/42 (61%), Positives = 35/42 (83%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPAI+KP+ALWTGKQ+FS++++PN+D PV NL K R Y
Sbjct: 591 LPPPAILKPQALWTGKQVFSIMMRPNKDSPVKVNLDAKCREY 632
>gi|224060165|ref|XP_002300065.1| predicted protein [Populus trichocarpa]
gi|222847323|gb|EEE84870.1| predicted protein [Populus trichocarpa]
Length = 1394
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ K + +S GY C I GRL + GC A +TLE I + L+ +R+
Sbjct: 706 DVQPGKKLIDEKGKTISNGYRHCNKLIADYNGGRLALKSGCDATQTLETEITERLNKLRE 765
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C++ELH N PL+M+ GSKGS INISQMIACVGQQ++ G R P+GF +RSLPHF
Sbjct: 766 EAGDVCMKELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGSRAPDGFIDRSLPHF 825
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 826 PRKSKTPAAKGFV 838
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 79/108 (73%), Gaps = 1/108 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ LQ L+INS+ IPL+MQ G +QRL GKQGRFR NL+GKRV+FT RTVI
Sbjct: 312 WDELQAVVTLYINSDVR-IPLDMQVGRPLSGFVQRLTGKQGRFRQNLAGKRVEFTGRTVI 370
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP H+A+ILTYPERV H N E L+Q V NG K+PG
Sbjct: 371 SPDPNLKITEVAIPIHMARILTYPERVTHHNIEKLRQCVNNGSYKYPG 418
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
V +P P+++KP LWTGKQ+FS++L+P+ + V NL K + Y S K+ +ER
Sbjct: 578 VDLPTPSVLKPIELWTGKQLFSVLLRPHANVRVYVNLILKEKNY----SRPNKEHKKERE 633
Query: 366 TAC 368
T C
Sbjct: 634 TMC 636
>gi|326469885|gb|EGD93894.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1444
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG----ANYL 435
Query: 122 LSEGYS 127
+ EG S
Sbjct: 436 IKEGNS 441
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L+R K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 716 DVYPGESLVRLKDTLINTAFQQCDDLITA--ASKEKPQMGKSDSRQTAENEITGILNKVR 773
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 774 QQAGEYCISELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 833
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 834 FARHSQHALAKGFVR 848
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 291 SVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S+L SS RF +PPPA +KP+ LWTGKQ+FS++++PN+DCPV NL R
Sbjct: 584 SMLDSSTRFE-------LPPPATIKPQMLWTGKQVFSVLMRPNKDCPVKVNLDAACR 633
>gi|310799174|gb|EFQ34067.1| RNA polymerase Rpb1 [Glomerella graminicola M1.001]
Length = 1342
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 203 IMEQWEYLQLQVAMYVNSDVPGL---QQPGFGKAVRGFCQRLKGKQGRFRGNLSGKRVDF 259
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +P+ VAK LTYPERV N LK+ V NGP+ PG
Sbjct: 260 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPERVSDYNIAKLKECVRNGPNIWPG 313
Score = 111 bits (278), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 80/135 (59%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K L+ + + I + +L+ GCS E+TLE I LS +R AG C+
Sbjct: 606 LLEKKSTLVKTASLEVDVLIDKYKKNKLEKATGCSMEQTLENSISGLLSKVRTQAGAHCI 665
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L +N PLVMA GSKGS IN++QM+A VGQQ I GKRV +GF +R+LPHF K + P
Sbjct: 666 ETLSKNNAPLVMAKCGSKGSNINVAQMVALVGQQIIGGKRVADGFQDRTLPHFHKNAPQP 725
Query: 234 ASKGNVKFLRYGNRL 248
SKG V+ Y L
Sbjct: 726 PSKGFVENSFYSGLL 740
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPA++KPKALWTGKQ+F+++++PN++ PV NL K R Y
Sbjct: 477 LPPPAVLKPKALWTGKQVFNMMMRPNKESPVKINLDAKCREY 518
>gi|302500232|ref|XP_003012110.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
gi|291175666|gb|EFE31470.1| hypothetical protein ARB_01618 [Arthroderma benhamiae CBS 112371]
Length = 1444
Score = 135 bits (340), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG----ANYL 435
Query: 122 LSEGYS 127
+ EG S
Sbjct: 436 IKEGNS 441
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/135 (41%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L++ K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 716 DVYPGESLVKLKDTLINTAFQQCDDLITA--ASKEKPQMGKSDSRQTAENEITGILNKVR 773
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 774 QQAGEYCISELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 833
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 834 FARHSQHALAKGFVR 848
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 291 SVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S+L SS RF +PPPA +KP+ LWTGKQ+FS++++PN+DCPV NL R
Sbjct: 584 SMLDSSTRFE-------LPPPATIKPQMLWTGKQVFSVLMRPNKDCPVKVNLDAACR 633
>gi|312136875|ref|YP_004004212.1| DNA-directed RNA polymerase, subunit a' [Methanothermus fervidus
DSM 2088]
gi|311224594|gb|ADP77450.1| DNA-directed RNA polymerase, subunit A' [Methanothermus fervidus
DSM 2088]
Length = 870
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 65/114 (57%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H + N+E SG+P + R L+QRLKGK+GRFRGNLSGKRV+F
Sbjct: 257 IIEDLWELLQYHVVTYFNNEASGVPPARHRSGRPLRTLMQRLKGKEGRFRGNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+PE +AK LT P RV+ N E +K+ + NGPDKHPG
Sbjct: 317 SARTVISPDPNLSINEVGVPEIIAKELTVPVRVNEWNIEEVKKYIKNGPDKHPG 370
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
AKE++ L + K I+A E+G L+ PG + ETLE I++ L RD G+
Sbjct: 645 AKEKIKEHLKKSEEKVNQLIKAYENGELEALPGRTLRETLETRIMQVLGEARDKTGEIAE 704
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L N ++MAL+G++GS +N++QM ACVGQQ+I G+RV G+ R+LPHF K
Sbjct: 705 SYLDMDENHAMIMALTGARGSMLNLTQMSACVGQQSIRGERVQRGYYGRTLPHFKKGDMG 764
Query: 233 PASKGNV 239
++G V
Sbjct: 765 ARARGFV 771
>gi|326479108|gb|EGE03118.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1427
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 378
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 379 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG----ANYL 434
Query: 122 LSEGYS 127
+ EG S
Sbjct: 435 IKEGNS 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L+R K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 715 DVYPGESLVRLKDTLINTAFQQCDDLITA--ASKEKPQMGKSDSRQTAENEITGILNKVR 772
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 773 QQAGEYCISELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 832
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 833 FARHSQHALAKGFVR 847
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 291 SVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S+L SS RF +PPPA +KP+ LWTGKQ+FS++++ N+DCPV NL R
Sbjct: 583 SMLDSSTRFE-------LPPPATIKPQMLWTGKQVFSVLMRSNKDCPVKVNLDAACR 632
>gi|315056651|ref|XP_003177700.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum
CBS 118893]
gi|311339546|gb|EFQ98748.1| DNA-directed RNA polymerase III subunit RPC1 [Arthroderma gypseum
CBS 118893]
Length = 1429
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/126 (55%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 IIECWDYMQLQIAVYINSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 378
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 379 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG----ANYL 434
Query: 122 LSEGYS 127
+ EG S
Sbjct: 435 IKEGNS 440
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L+R K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 715 DVYPGESLVRLKDTLINTAFQQCDDLITA--ASKEKPQMGKSDSRQTAENEITGILNKVR 772
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 773 QQAGEYCISELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 832
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 833 FARHSQHALAKGFVR 847
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 38/57 (66%), Gaps = 7/57 (12%)
Query: 291 SVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S+L SS RF +PPPA +KP+ LWTGKQ+FS++++PN+D PV NL R
Sbjct: 583 SMLDSSTRFE-------LPPPATIKPQMLWTGKQVFSVLMRPNKDSPVKVNLDAACR 632
>gi|15897171|ref|NP_341776.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus P2]
gi|284174417|ref|ZP_06388386.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|384433684|ref|YP_005643042.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
gi|17368575|sp|Q980R2.1|RPOA1_SULSO RecName: Full=DNA-directed RNA polymerase subunit A'
gi|167744881|pdb|2PMZ|A Chain A, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|167744892|pdb|2PMZ|Q Chain Q, Archaeal Rna Polymerase From Sulfolobus Solfataricus
gi|239782143|pdb|3HKZ|A Chain A, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|239782156|pdb|3HKZ|I Chain I, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
gi|13813360|gb|AAK40566.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Sulfolobus
solfataricus P2]
gi|261601838|gb|ACX91441.1| DNA-directed RNA polymerase subunit A' [Sulfolobus solfataricus
98/2]
Length = 880
Score = 135 bits (340), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +AK LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ + I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA
Sbjct: 671 EVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMAR 730
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 731 TGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|214028076|gb|ACJ63307.1| RNA polymerase III large subunit [Asparagus officinalis]
Length = 544
Score = 135 bits (339), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 91/133 (68%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ + +GY +C +I E+ +L+ +PG +A ETLE I + L+ IR
Sbjct: 193 DVQPGERLNQQKKMTIDDGYGRCISFIELYENRKLKLRPGANAAETLEVEITEVLNEIRK 252
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C++ELH N PL+M+ GSKGS INISQMIACVGQQ++ G+R PNGF +R+LPHF
Sbjct: 253 TAGDVCMKELHWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRTLPHF 312
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 313 PIKSKTPAAKGFV 325
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 30/45 (66%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +PPPA++KP LWTGKQ+FS+I++PN V N K R +
Sbjct: 72 IDLPPPALIKPIELWTGKQLFSVIVRPNAQTRVFVNFVVKERIHV 116
>gi|443919746|gb|ELU39822.1| DNA-directed RNA polymerase III largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 385
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 111/343 (32%), Positives = 159/343 (46%), Gaps = 54/343 (15%)
Query: 15 LFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIY 74
++INSET GIP M K RG QRLKGKQGRFRGNLSGKRVDF+ RTVISPDPNL I
Sbjct: 1 MYINSETPGIPPQMGMKP-MRGFCQRLKGKQGRFRGNLSGKRVDFSGRTVISPDPNLAID 59
Query: 75 QVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIR 134
+V +P VAKILTYP RV N +KQ V+NG D HPG + G + Y++
Sbjct: 60 EVAVPVRVAKILTYPCRVTAHNLTQMKQAVINGADVHPG-----ANYIQTGDTGFRKYLK 114
Query: 135 AMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSF 194
++ L A + +EL + L + H +G +V L + S
Sbjct: 115 VLKP-------------KLRAKLAEELKI-------GDLVDRHIVDGDIV--LFNRQPSL 152
Query: 195 INISQMIACVGQQAINGKRV------PNGFD------NRSLPHFDKFSKDPASKGNVKFL 242
+S M + R+ P G D N +P ++ + F+
Sbjct: 153 HKLSIMCHRAKIRPWRTFRLNECACGPYGADFDGDEMNMHVPQTEEARTE-------AFI 205
Query: 243 RYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFREH 302
R I + ++ + I+A L K++ R S + + L+
Sbjct: 206 LMNVRQNIVTPRNGEPIISAIQDFITASFLLSSKERFFDRRQFTQICSYLGDAELQIDIP 265
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
++I P LWTGKQIF++++KPN+ V N++ +
Sbjct: 266 PPTIIKP-------ARLWTGKQIFNVLMKPNKASNVRVNVEAR 301
>gi|327294643|ref|XP_003232017.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
rubrum CBS 118892]
gi|326465962|gb|EGD91415.1| DNA-directed RNA polymerase III largest subunit [Trichophyton
rubrum CBS 118892]
Length = 1444
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 86/126 (68%), Gaps = 5/126 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A+++NS+ G+ N K RGL QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYVNSDIPGLQ-NTDSKKTIRGLCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERL 121
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L+Q + NG PG L
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRQCIRNGTKTWPG----ANYL 435
Query: 122 LSEGYS 127
+ EG S
Sbjct: 436 IKEGNS 441
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 84/135 (62%), Gaps = 5/135 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCS-AEETLEAVILKELSVIR 165
D +PG L+R K+ L++ + +C+ I A + + + Q G S + +T E I L+ +R
Sbjct: 716 DVYPGESLVRLKDTLINTAFQQCDDLITA--ASKEKPQMGKSDSRQTAENEITGILNKVR 773
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
AG+ C+ EL N PL+MA GSKGS IN+SQM+A VGQQ+I RV GF +R+LPH
Sbjct: 774 QQAGEYCISELSKHNAPLIMATCGSKGSNINVSQMVAVVGQQSIENARVSKGFQDRTLPH 833
Query: 226 FDKFSKDPASKGNVK 240
F + S+ +KG V+
Sbjct: 834 FARHSQHALAKGFVR 848
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%), Gaps = 7/57 (12%)
Query: 291 SVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
S+L SS RF +PPPA +KP+ LWTGKQ+FS++++PN+DCPV NL R
Sbjct: 584 SMLDSSTRFE-------LPPPATIKPQMLWTGKQVFSVLMRPNKDCPVKVNLDAACR 633
>gi|214028078|gb|ACJ63308.1| RNA polymerase III large subunit [Drimys winteri]
Length = 547
Score = 135 bits (339), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H L K+ + +GY +C+ I + G L Q GC+A +TLE+ I L+ +RD
Sbjct: 196 PDEH--LNHQKKTTIEKGYEECDNLILSYNKGTLALQSGCNAAQTLESRITGVLNKVRDT 253
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
A C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF NRSLPHF
Sbjct: 254 AANVCMDTLHWRNSPLIMSCCGSKGSPINISQMVACVGQQSVGGRRAPDGFINRSLPHFH 313
Query: 228 KFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 314 RNSKTPAAKGFV 325
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +P PA++KP LWTGKQIFS++++P V NL + Y+
Sbjct: 72 IDLPTPALIKPMELWTGKQIFSVLIRPQAHMRVYVNLTVVEKNYS 116
>gi|115459150|ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa Japonica Group]
gi|38347455|emb|CAD41360.2| OSJNBa0076N16.24 [Oryza sativa Japonica Group]
gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa Japonica Group]
gi|116310339|emb|CAH67354.1| OSIGBa0130B08.14 [Oryza sativa Indica Group]
gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa Indica Group]
gi|215768005|dbj|BAH00234.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218195112|gb|EEC77539.1| hypothetical protein OsI_16437 [Oryza sativa Indica Group]
Length = 1383
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ + GY C I + G L+ QPGC+A +TLE I + L+ IR+
Sbjct: 693 DVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIRE 752
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF
Sbjct: 753 EAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHF 812
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 813 PINSKTPAAKGFV 825
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 80/108 (74%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ LQL +INS+ +P +S+ RGL+QRLKGK GRFRGNLSGKR ++T RTVI
Sbjct: 304 WQHLQLQVVEYINSDAPSLP-----ESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP KHPG
Sbjct: 359 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPG 406
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 6/67 (8%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS L S L ++ ++ +P PA++KP LWTGKQ+FS++++PN V NL
Sbjct: 549 RSSFSLLCSYLGDAME------NIDLPTPALIKPIELWTGKQLFSVLVRPNACTKVFLNL 602
Query: 343 KTKGRAY 349
K + Y
Sbjct: 603 TVKEKIY 609
>gi|332796431|ref|YP_004457931.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
gi|332694166|gb|AEE93633.1| DNA-directed RNA polymerase subunit A' [Acidianus hospitalis W1]
Length = 880
Score = 134 bits (338), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDPN+ I +VG+P +AKILT PERV N E +++ VLNGPDK PG
Sbjct: 321 SSRTVISPDPNISIDEVGVPIDIAKILTVPERVTKWNIERMREYVLNGPDKWPG 374
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 66/107 (61%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I E G L+ PG + EE+LE+ IL L +R+ AG+ +L P N +MA +G++G
Sbjct: 676 IAKYEKGELEQIPGRTLEESLESYILDTLDKLRNDAGEIAAADLDPFNNVYIMARTGARG 735
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ R+LPHF + ++G +
Sbjct: 736 SVLNITQMAAMLGQQSVRGERISRGYYERALPHFKRNDISAEARGFI 782
>gi|403375855|gb|EJY87901.1| RNA polymerase III [Oxytricha trifallax]
Length = 1365
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 66/126 (52%), Positives = 87/126 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K++LL GY C+ I + G+L + GC+ E+TLE+ + ELS IRD AG
Sbjct: 656 LIEEKQKLLEAGYVNCDKLIEQYKQGKLVLKAGCNPEQTLESYLNGELSKIRDKAGDILK 715
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N PL+MA+ GSKGS IN+ QMIA VGQQ +NG+R+PNGF +RSLPHF+ +SK P
Sbjct: 716 SKLPKYNSPLIMAICGSKGSNINLCQMIALVGQQTVNGQRMPNGFFDRSLPHFEPYSKYP 775
Query: 234 ASKGNV 239
ASKG V
Sbjct: 776 ASKGFV 781
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/110 (60%), Positives = 77/110 (70%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
EDW LQ A + NSET G+P N+ + R L QRLKGK GRFR NLSGKRVDFT RT
Sbjct: 259 EDWLLLQYTIAQYFNSETPGLPHNLLGNKQIRALSQRLKGKHGRFRQNLSGKRVDFTGRT 318
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN I +V IP ++AK LT+PERV+ N + L+ LV GPD HPG
Sbjct: 319 VISPDPNCAIDEVMIPIYIAKNLTFPERVNQYNIDKLRNLVKIGPDVHPG 368
Score = 54.7 bits (130), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 280 DKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVN 339
DK +RN ++ F + + IPPP I+KP LWTGKQI +++L+PNR V
Sbjct: 506 DKFLNRNEFMQI----CAYFWDANEKIEIPPPTIIKPVELWTGKQIINVLLRPNRKSYVY 561
Query: 340 ANLKTKGRAYT 350
N K R Y+
Sbjct: 562 VNTVVKERNYS 572
>gi|227828174|ref|YP_002829954.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|229585403|ref|YP_002843905.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|385773844|ref|YP_005646411.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
gi|385776479|ref|YP_005649047.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|227459970|gb|ACP38656.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.14.25]
gi|228020453|gb|ACP55860.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.27]
gi|323475227|gb|ADX85833.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
REY15A]
gi|323477959|gb|ADX83197.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
HVE10/4]
Length = 880
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +A+ LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA +G++G
Sbjct: 676 IQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARG 735
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 736 SVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|237823477|pdb|2WAQ|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823490|pdb|2WB1|A Chain A, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|237823512|pdb|2WB1|W Chain W, The Complete Structure Of The Archaeal 13-Subunit Dna-
Directed Rna Polymerase
gi|323462788|pdb|2Y0S|A Chain A, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|323462810|pdb|2Y0S|W Chain W, Crystal Structure Of Sulfolobus Shibatae Rna Polymerase In
P21 Space Group
gi|400260742|pdb|4AYB|A Chain A, Rnap At 3.2ang
gi|400260759|pdb|4B1O|A Chain A, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|400260785|pdb|4B1P|W Chain W, Archaeal Rnap-Dna Binary Complex At 4.32ang
gi|219814429|gb|ACL36488.1| RNA polymerase subunit 1N [Sulfolobus shibatae B12]
Length = 880
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +A+ LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ + I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA
Sbjct: 671 EVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMAR 730
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 731 TGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|227830881|ref|YP_002832661.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|229579767|ref|YP_002838166.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|229581564|ref|YP_002839963.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
gi|227457329|gb|ACP36016.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.S.2.15]
gi|228010482|gb|ACP46244.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.G.57.14]
gi|228012280|gb|ACP48041.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
Y.N.15.51]
Length = 880
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +A+ LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA +G++G
Sbjct: 676 IQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARG 735
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 736 SVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|238620364|ref|YP_002915190.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
gi|238381434|gb|ACR42522.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
M.16.4]
Length = 880
Score = 134 bits (338), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +A+ LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA +G++G
Sbjct: 676 IQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARG 735
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 736 SVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|222629113|gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
Length = 1321
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 88/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ + GY C I + G L+ QPGC+A +TLE I + L+ IR+
Sbjct: 631 DVQPGEHLNQEKKMKIDGGYKDCHDLIASYSKGALRLQPGCNAAQTLEQSITRVLNEIRE 690
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R PNGF +R+LPHF
Sbjct: 691 EAGKVCMNTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRTLPHF 750
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 751 PINSKTPAAKGFV 763
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 80/108 (74%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ LQL +INS+ +P +S+ RGL+QRLKGK GRFRGNLSGKR ++T RTVI
Sbjct: 305 WQHLQLQVVEYINSDAPSLP-----ESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 359
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP KHPG
Sbjct: 360 SPDPNLRITEVAIPILMARVLTYPERVSYYNIEKLRQCIRNGPHKHPG 407
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 313 IMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+M P LWTGKQ+FS++++PN V NL K + Y
Sbjct: 511 LMGPIELWTGKQLFSVLVRPNACTKVFLNLTVKEKIY 547
>gi|425778039|gb|EKV16185.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
gi|425781413|gb|EKV19382.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
Length = 2075
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 948 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 1005
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q + NG +K PG
Sbjct: 1006 GRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG 1058
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 109 DKHP--GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P GL+++K L+ YS+C+ I ++G L+ PGC +T+E I LS +R
Sbjct: 1344 DVYPSAGLVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKVRQ 1403
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+++L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 1404 QAGDECIKQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 1463
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 1464 PKNARQPPSKGFVR 1477
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPP+++KP+ +WTGKQ+F+++++PN PV NL R +
Sbjct: 1216 ETRFDLPPPSVLKPQMMWTGKQVFNILMRPNSSDPVMVNLDAACREF 1262
>gi|284998388|ref|YP_003420156.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
gi|284446284|gb|ADB87786.1| DNA-directed RNA polymerase subunit A' [Sulfolobus islandicus
L.D.8.5]
Length = 880
Score = 134 bits (337), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 68/132 (51%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +A+ LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 66/107 (61%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA +G++G
Sbjct: 676 IQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARG 735
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 736 SVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>gi|402077501|gb|EJT72850.1| hypothetical protein GGTG_09702 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 1461
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 79/114 (69%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NSE G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 319 IMEQWEFLQLQIAMYVNSEVPGLG---QPGFGKMTRGFCQRLKGKQGRFRGNLSGKRVDF 375
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV IP VAK LTYPERV N L+Q V NGP PG
Sbjct: 376 SGRTVISPDPNLGIDQVAIPILVAKNLTYPERVQFQNLAKLQQCVRNGPATWPG 429
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 84/122 (68%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K++L+++ KC+ I ++G+LQ GC E+TLE I LS +R AG C++ L
Sbjct: 728 KDKLVADADRKCDDLIDTFKAGKLQKAAGCDLEQTLENSISGILSRVRQQAGAKCVETLS 787
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K S+ P SKG
Sbjct: 788 RNNAPLIMAKSGSKGSEINVAQMVAAVGQQIIGGQRVPDGFQDRSLPHFHKNSRQPPSKG 847
Query: 238 NV 239
V
Sbjct: 848 FV 849
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 34/45 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
+PPPAI+KP ALWTGKQIF+++++PN+ PV NL K R Y +
Sbjct: 595 LPPPAILKPCALWTGKQIFNVLMRPNKQSPVKVNLDAKCREYKVR 639
>gi|322704718|gb|EFY96310.1| DNA-directed RNA polymerase III [Metarhizium anisopliae ARSEF 23]
Length = 1447
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 315 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKSTRGFCQRLKGKQGRFRGNLSGKRVDF 371
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +P+ VAK LTYPE+V+ N E L+Q V NG D PG
Sbjct: 372 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPG 425
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 82/123 (66%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE L+S Y C+ I + G+L PGC+ E+TLE I LS +R AG C+ L
Sbjct: 723 KENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQAGSYCIDTLS 782
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K ++ P SKG
Sbjct: 783 RNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKG 842
Query: 238 NVK 240
VK
Sbjct: 843 FVK 845
Score = 74.3 bits (181), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ E T + IPPPAI+ PKALWTGKQIFS++++PN+DC V NL K RAY
Sbjct: 579 MHMMEQGTKIEIPPPAIVAPKALWTGKQIFSIMMRPNKDCSVKINLDAKCRAY 631
>gi|322702047|gb|EFY93795.1| DNA-directed RNA polymerase III [Metarhizium acridum CQMa 102]
Length = 1447
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP +RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 315 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKSTRGFCQRLKGKQGRFRGNLSGKRVDF 371
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV +P+ VAK LTYPE+V+ N E L+Q V NG D PG
Sbjct: 372 SGRTVISPDPNLGIDQVAVPQLVAKNLTYPEKVNRQNIEKLRQCVRNGCDVWPG 425
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 64/123 (52%), Positives = 82/123 (66%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
KE L+S Y C+ I + G+L PGC+ E+TLE I LS +R AG C+ L
Sbjct: 723 KENLVSTAYKMCDDLIETFKQGKLDKAPGCNMEQTLENSISGILSKVRQQAGSYCIDTLS 782
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+N PL+MA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K ++ P SKG
Sbjct: 783 RNNAPLIMAQSGSKGSDINVAQMVAVVGQQIIGGQRVPDGFQDRSLPHFHKNARQPPSKG 842
Query: 238 NVK 240
VK
Sbjct: 843 FVK 845
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 39/53 (73%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ E T + IPPPAI+ PKALWTGKQIFS++++PN+DC V NL K RAY
Sbjct: 579 MHMMEQGTKIEIPPPAIVAPKALWTGKQIFSIMMRPNKDCSVKINLDAKCRAY 631
>gi|399218552|emb|CCF75439.1| unnamed protein product [Babesia microti strain RI]
Length = 1459
Score = 134 bits (337), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 85/112 (75%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKS---KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+W+++QL C +INSE+ + + K+ SRG+ QRLKGK+GRFRGNLSGKRVDF++
Sbjct: 282 NWQFMQLQCTRYINSESPAVSQLLATKNITKSSRGICQRLKGKEGRFRGNLSGKRVDFSA 341
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ I QV +P+++A+ LTYPERV+ N LK+ VLNGPD PG
Sbjct: 342 RTVISPDPNVGIDQVVVPKYIAQRLTYPERVNTTNINILKRAVLNGPDSWPG 393
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 86/126 (68%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K +L+ GY K + I G +Q + GCSA+ETLE +I EL +R+ AGK C
Sbjct: 689 LILEKGVVLNNGYKKVDHEIEKYNRGEIQAKFGCSAQETLELIIKGELDDLRNQAGKVCY 748
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L P N PL+M SG+KGS INI+QMIACVGQQ ++G+R+ NGF NRSLPHF+ S +P
Sbjct: 749 EHLPPQNKPLIMFNSGAKGSLINIAQMIACVGQQNVSGQRIQNGFVNRSLPHFEMDSLEP 808
Query: 234 ASKGNV 239
S+G V
Sbjct: 809 KSRGFV 814
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+PPPAI+ P LWTGKQ+FSL+L PNR NL+ K R +
Sbjct: 555 VPPPAIIYPIQLWTGKQVFSLLLSPNRKDRTYINLELKEREF 596
>gi|259487939|tpe|CBF87003.1| TPA: hypothetical protein similar to RNA polymerase III (Broad)
[Aspergillus nidulans FGSC A4]
Length = 1445
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V+ NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 431
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 84/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+++K L+ Y++C+ I ++G L+ PGC +T+E + LS +R AG C+
Sbjct: 724 LVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF K ++ P
Sbjct: 784 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T +PPPA+ KP+ LWTGKQ+F+++++PN+D PV NL + +
Sbjct: 589 QTRFDLPPPAVFKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQF 635
>gi|67524109|ref|XP_660116.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
gi|40744841|gb|EAA63997.1| hypothetical protein AN2512.2 [Aspergillus nidulans FGSC A4]
Length = 2092
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 968 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 1025
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V+ NKE L+Q V NG K PG
Sbjct: 1026 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 1078
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L+++K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 1364 DVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 1423
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 1424 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 1483
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 1484 PKNARQPPSKGFVR 1497
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 34/47 (72%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T +PPPA+ KP+ LWTGKQ+F+++++PN+D PV NL + +
Sbjct: 1236 QTRFDLPPPAVFKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACKQF 1282
>gi|402226085|gb|EJU06145.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1455
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPGL-LRA-KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LRA KE+++ + Y C I+ + G+L +PGC ++TLEA I LS +R+
Sbjct: 751 DVTPGAELRARKEKMVVKAYDDCTELIQQAKLGKLANKPGCDQDQTLEASISSILSKVRE 810
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C++EL N P +M++ GSKGS +N+SQMIACVGQQ I GKRVP+GF RSLPHF
Sbjct: 811 SVGDICMKELSIHNAPRLMSICGSKGSVLNVSQMIACVGQQIIGGKRVPDGFQERSLPHF 870
Query: 227 DKFSKDPASKGNV 239
K S++P SKG V
Sbjct: 871 PKKSREPPSKGFV 883
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 81/115 (70%), Gaps = 7/115 (6%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQP---KSKSRGLIQRLKGKQGRFRGNLSGKRVD 58
I E+W++LQ AL+INSE N+ P + RG QRLKGKQGRFRGNLSGKRVD
Sbjct: 300 IMENWDFLQAGVALYINSEQP----NLSPAYVQKPIRGFCQRLKGKQGRFRGNLSGKRVD 355
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F+ RTVISPDPNL+I +V IP+ VA LTYP RV+ N E L+Q V NGP + PG
Sbjct: 356 FSGRTVISPDPNLRIDEVAIPKRVAVKLTYPARVNEYNIESLRQAVRNGPLEWPG 410
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 29/40 (72%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKT 344
+ +PPP I +P+ LWTGKQIF+++++PN V N+++
Sbjct: 577 DIDLPPPTIWRPECLWTGKQIFNVLMRPNSKSRVLVNVES 616
>gi|118346269|ref|XP_977135.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila]
gi|89288380|gb|EAR86368.1| RNA polymerase Rpb1, domain 2 family protein [Tetrahymena
thermophila SB210]
Length = 1418
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 66/118 (55%), Positives = 86/118 (72%), Gaps = 5/118 (4%)
Query: 1 MIQEDWEWLQLHC--ALFINSETSGIPLNMQP---KSKSRGLIQRLKGKQGRFRGNLSGK 55
+I+ + EW L C A ++N+ET +P M K R L QRLKGK+GRFRGNLSGK
Sbjct: 251 LIKINQEWFLLQCSHAHYLNAETPNLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGK 310
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
R +FT RTVISPDPN+ I V +PE++AKILT+PE+V+ N E LK+LV+NGP+K+PG
Sbjct: 311 RSNFTGRTVISPDPNIPIDNVVVPEYMAKILTFPEQVNAINIERLKKLVINGPEKYPG 368
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 112 PGLLRAKERLLSEGYSKC--EGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAG 169
P L + E+ E C + I G+L Q ++ +EA I K L+ +R+ G
Sbjct: 668 PSLNKINEKKKDEAIDSCKFQSLIFTNSIGKLDMQTVSDRKKLVEAEISKTLNQVREDIG 727
Query: 170 KACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK 228
C ++L P+NGPL+MA GSKGS N+SQMI CVGQQ I G+RVPNGF R+LPHF+K
Sbjct: 728 SNCNKQLPPTNGPLIMATCGSKGSATNLSQMIGCVGQQIIGGRRVPNGFTGRTLPHFEK 786
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 18/72 (25%)
Query: 299 FREHETSVIIPPPAIMKP------------------KALWTGKQIFSLILKPNRDCPVNA 340
F + + +PPPAI+ P K +WTGKQI +IL+PNR +
Sbjct: 515 FSDGIERIDLPPPAIILPVGMKYYLLNIFQSQIYQQKEMWTGKQIIDVILRPNRFSNIIV 574
Query: 341 NLKTKGRAYTFK 352
NL K + Y K
Sbjct: 575 NLILKEKCYDTK 586
>gi|255938285|ref|XP_002559913.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584533|emb|CAP92586.1| Pc13g15170 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1448
Score = 134 bits (336), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 83/113 (73%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q + NG +K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPELVTRYNKEKLQQRICNGSNKWPG 431
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+++K L+ YS+C+ I ++G L+ PGC +T+E I LS +R AG C+
Sbjct: 724 LVQSKNDLVEAAYSQCDEVIAKYKAGTLEKYPGCDELQTMENQISGILSKVRQQAGDECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
++L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF K ++ P
Sbjct: 784 RQLSKYNSPLIMATSGSKGSGINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPP+I+KP+ +WTGKQ+F+++++PN+D PV NL R +
Sbjct: 589 ETRFDLPPPSILKPQMMWTGKQVFNILMRPNKDDPVMVNLDAACREF 635
>gi|406863545|gb|EKD16592.1| DNA-directed RNA polymerase III [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1965
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/115 (59%), Positives = 80/115 (69%), Gaps = 7/115 (6%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVD 58
I E W++LQ AL++NS+ G +Q K RG QRLKGKQGRFRGNLSGKRVD
Sbjct: 810 IVEQWDFLQTAIALYVNSDVPG----LQDKGNGKPMRGFCQRLKGKQGRFRGNLSGKRVD 865
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++RTVISPDPNL I QV +P VA +TYPER N E L++LV NGP KHPG
Sbjct: 866 FSARTVISPDPNLGIDQVAVPILVAMNMTYPERAQKNNIEKLRRLVRNGPSKHPG 920
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/134 (50%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L AK RL+ + Y++ E I+ ++G LQ GC+ EETLE VI LS +R
Sbjct: 1205 DVYPSKDLTAAKSRLVLKAYAQSEDLIQQFQNGTLQKSTGCNMEETLENVISGVLSKVRQ 1264
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ L N PL+MA SGSKGS IN++QM+A VGQQ I GKRV +GF +R+LPHF
Sbjct: 1265 SAGEYCISTLSKWNSPLIMAKSGSKGSTINVAQMVAVVGQQIIGGKRVQDGFQDRTLPHF 1324
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 1325 PKNARQPPSKGFVR 1338
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 36/48 (75%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
T + +PPPAI+KP+ALWTGKQ+FS +++PN+ PV NL K R Y F
Sbjct: 1079 THLDVPPPAIIKPQALWTGKQVFSALMRPNKKSPVKVNLDAKCRDYQF 1126
>gi|302409260|ref|XP_003002464.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium
albo-atrum VaMs.102]
gi|261358497|gb|EEY20925.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium
albo-atrum VaMs.102]
Length = 1456
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 316 IMEQWEYLQLQIAMYVNSDVPGL---QQPGFGKTVRGFCQRLKGKQGRFRGNLSGKRVDF 372
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV IP VAK LTYPERV+ + + L++ V NGPD PG
Sbjct: 373 SGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPG 426
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 81/126 (64%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K++L+ + + + I + G+L+ GC+ E+TLE I LS +R AG C+
Sbjct: 719 LLVKKKKLIEDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCI 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L +N PLVMA SGSKGS IN++QM+A VGQQ I G RV +GF +RSLPHF K + P
Sbjct: 779 QTLSRNNAPLVMAKSGSKGSEINVAQMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQP 838
Query: 234 ASKGNV 239
SKG V
Sbjct: 839 PSKGFV 844
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T + +PPPAI+KP+ALWTGKQ+FS++L+PN++C V NL K R Y K
Sbjct: 586 THLDLPPPAILKPQALWTGKQVFSMMLRPNKECQVKINLDAKCREYKAK 634
>gi|346972060|gb|EGY15512.1| DNA-directed RNA polymerase III subunit RPC1 [Verticillium dahliae
VdLs.17]
Length = 1456
Score = 133 bits (335), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/114 (60%), Positives = 81/114 (71%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 316 IMEQWEYLQLQIAMYVNSDVPGL---QQPGFGKTVRGFCQRLKGKQGRFRGNLSGKRVDF 372
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I QV IP VAK LTYPERV+ + + L++ V NGPD PG
Sbjct: 373 SGRTVISPDPNLGITQVAIPILVAKNLTYPERVNDYSLKKLRKCVQNGPDVWPG 426
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 81/126 (64%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL K++L+ + + + I + G+L+ GC+ E+TLE I LS +R AG C+
Sbjct: 719 LLVKKKKLIEDANIQVDELINTYKKGKLEKATGCNMEQTLENSISGLLSKVRTQAGAQCI 778
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L +N PLVMA SGSKGS IN++QM+A VGQQ I G RV +GF +RSLPHF K + P
Sbjct: 779 QTLSRNNAPLVMAKSGSKGSEINVAQMVAVVGQQIIGGSRVADGFQDRSLPHFHKNAPQP 838
Query: 234 ASKGNV 239
SKG V
Sbjct: 839 PSKGFV 844
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T + +PPPAI+KP+ALWTGKQ+FS++L+PN++C V NL K R Y K
Sbjct: 586 THLDLPPPAILKPQALWTGKQVFSMMLRPNKECQVKINLDAKCREYKAK 634
>gi|145242160|ref|XP_001393726.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus niger
CBS 513.88]
gi|134078271|emb|CAK96852.1| unnamed protein product [Aspergillus niger]
Length = 1450
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P LLR+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 717 DVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 777 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARQPPSKGFVR 850
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 589 QTRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACRQF 635
>gi|392572905|gb|EIW66048.1| hypothetical protein TREMEDRAFT_72470 [Tremella mesenterica DSM
1558]
Length = 1457
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/129 (48%), Positives = 84/129 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +K+ + E Y C+ I + G L+ PGC + TLE I LS +R G+
Sbjct: 721 PKLHLSKDGKVEEAYKYCDDLIEKAKKGLLENAPGCDQDTTLEQQISGTLSKVRGEVGEL 780
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C+Q+L N PL+MA GSKGS IN++QM+ACVGQQ I+G R+PNGF +RSLPHF K S+
Sbjct: 781 CMQDLSRHNAPLIMATCGSKGSVINVAQMVACVGQQIISGNRIPNGFQDRSLPHFHKKSR 840
Query: 232 DPASKGNVK 240
+P SKG V+
Sbjct: 841 NPPSKGFVR 849
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 83/113 (73%), Gaps = 4/113 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I +WE L AL+INS+T G+ + P SK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 312 IMANWENLGQVVALYINSQTPGLSV---PGSKPNRGFVQRLKGKQGRFRGNLSGKRVDFS 368
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVI PDPNL+I +V +PE VA L+YPERV++ N ++Q +++G HPG
Sbjct: 369 GRTVIGPDPNLRIDEVAVPEKVAVKLSYPERVNNYNIVAMRQAIIHGAKLHPG 421
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
F + + + IPPP I KP+ LWTGKQIF++++KPNR + NL+ K R
Sbjct: 582 FCDADLDIDIPPPTIWKPQRLWTGKQIFNVLMKPNRRSRIKVNLEAKCRT 631
>gi|303315581|ref|XP_003067798.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240107468|gb|EER25653.1| DNA-directed RNA polymerase III largest subunit, putative
[Coccidioides posadasii C735 delta SOWgp]
Length = 1444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL+AK++L+ E Y++C+ I+ ++G+L+ PG ++ +E+ I LS +R
Sbjct: 716 DVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QMIA VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGEQCIAELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K+++ P +KG V+
Sbjct: 836 PKYARQPPAKGFVR 849
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L++ V NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPPA++KP+ LWTGKQ+F+++++P+++ PV NL R +
Sbjct: 590 TKFDLPPPAVLKPQMLWTGKQVFNVLMRPSKESPVLVNLDAACREF 635
>gi|46670|emb|CAA32925.1| RNA polymerase subunit A (AA 1-880) [Sulfolobus acidocaldarius]
Length = 880
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VGIP +A++LT PERV + N E ++Q ++NGPDK PG
Sbjct: 321 SARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPG 374
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ EGYS+ + YIR G+L+ PG + EE+LE+ IL L +R AG+ + L P N
Sbjct: 665 IKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNN 724
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
+MA++G++GS +NI+QM A +GQQ++ G+R+ G+ R+L F P ++G VK
Sbjct: 725 VYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKN 784
Query: 241 -FLR 243
F+R
Sbjct: 785 SFMR 788
>gi|70606495|ref|YP_255365.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449066707|ref|YP_007433789.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449068981|ref|YP_007436062.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
gi|73920763|sp|P11512.2|RPOA1_SULAC RecName: Full=DNA-directed RNA polymerase subunit A'
gi|68567143|gb|AAY80072.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
DSM 639]
gi|449035215|gb|AGE70641.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
N8]
gi|449037489|gb|AGE72914.1| DNA-directed RNA polymerase subunit A' [Sulfolobus acidocaldarius
Ron12/I]
Length = 880
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VGIP +A++LT PERV + N E ++Q ++NGPDK PG
Sbjct: 321 SARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPG 374
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ EGYS+ + YIR G+L+ PG + EE+LE+ IL L +R AG+ + L P N
Sbjct: 665 IKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNN 724
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
+MA++G++GS +NI+QM A +GQQ++ G+R+ G+ R+L F P ++G VK
Sbjct: 725 VYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKN 784
Query: 241 -FLR 243
F+R
Sbjct: 785 SFMR 788
>gi|358371706|dbj|GAA88313.1| DNA-directed RNA polymerase III largest subunit [Aspergillus kawachii
IFO 4308]
Length = 2146
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 1017 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 1074
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 1075 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 1127
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P LLR+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 1413 DVYPSEKLLRSKHNLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 1472
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 1473 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 1532
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 1533 PKNARQPPSKGFVR 1546
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 1285 QTRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACREF 1331
>gi|392869043|gb|EAS30407.2| DNA-directed RNA polymerase III largest subunit [Coccidioides
immitis RS]
Length = 1444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL+AK++L+ E Y++C+ I+ ++G+L+ PG ++ +E+ I LS +R
Sbjct: 716 DVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QMIA VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGEQCIAELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K+++ P +KG V+
Sbjct: 836 PKYARQPPAKGFVR 849
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L++ V NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPPA++KP+ LWTGKQ+F+++++P+++ PV NL R +
Sbjct: 590 TKFDLPPPAVLKPQMLWTGKQVFNVLMRPSKESPVLVNLDAACREF 635
>gi|119191177|ref|XP_001246195.1| hypothetical protein CIMG_05636 [Coccidioides immitis RS]
Length = 1430
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL+AK++L+ E Y++C+ I+ ++G+L+ PG ++ +E+ I LS +R
Sbjct: 716 DVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QMIA VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGEQCIAELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K+++ P +KG V+
Sbjct: 836 PKYARQPPAKGFVR 849
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L++ V NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPPA++KP+ LWTGKQ+F+++++P+++ PV NL R +
Sbjct: 590 TKFDLPPPAVLKPQMLWTGKQVFNVLMRPSKESPVLVNLDAACREF 635
>gi|169780898|ref|XP_001824913.1| DNA-directed RNA polymerase III subunit RPO31 [Aspergillus oryzae
RIB40]
gi|83773653|dbj|BAE63780.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867224|gb|EIT76474.1| RNA polymerase III, large subunit [Aspergillus oryzae 3.042]
Length = 1447
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL++K L+ Y++C+ I ++G L+T PGC +T+E + LS +R AG C+
Sbjct: 724 LLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF K ++ P
Sbjct: 784 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R Y
Sbjct: 589 ETRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVMVNLDAACREY 635
>gi|350640058|gb|EHA28411.1| hypothetical protein ASPNIDRAFT_128642 [Aspergillus niger ATCC 1015]
Length = 2063
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 934 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 991
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 992 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 1044
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P LLR+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 1330 DVYPSEKLLRSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 1389
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 1390 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 1449
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 1450 PKNARQPPSKGFVR 1463
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+T +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 1202 QTRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACRQF 1248
>gi|320035344|gb|EFW17285.1| DNA-directed RNA polymerase III largest subunit [Coccidioides
posadasii str. Silveira]
Length = 1444
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 95/134 (70%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL+AK++L+ E Y++C+ I+ ++G+L+ PG ++ +E+ I LS +R
Sbjct: 716 DVYPGDSLLQAKKQLVEEAYAQCDALIQLFKAGKLEKAPGGDEQQNMESQISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QMIA VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGEQCIAELSKWNSPLIMATSGSKGSTINVAQMIALVGQQIIAGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K+++ P +KG V+
Sbjct: 836 PKYARQPPAKGFVR 849
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L++ V NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERVRNGTKIWPG 431
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPPA++KP+ LWTGKQ+F+++++P+++ PV NL R +
Sbjct: 590 TKFDLPPPAVLKPQMLWTGKQVFNVLMRPSKESPVLVNLDAACREF 635
>gi|121706250|ref|XP_001271388.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119399534|gb|EAW09962.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1449
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVSRYNKEKLQQRVRNGTKKWPG 431
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHP--GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P GL+R+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 717 DVYPSEGLVRSKNELVESAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 777 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARQPPSKGFVR 850
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPP+I+KP+ +WTGKQ+F+++++PN+D PV NL R Y
Sbjct: 589 ETRFDLPPPSILKPQMMWTGKQVFNILMRPNKDDPVMVNLDAACREY 635
>gi|238504894|ref|XP_002383676.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|220689790|gb|EED46140.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1436
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 60/127 (47%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL++K L+ Y++C+ I ++G L+T PGC +T+E + LS +R AG C+
Sbjct: 724 LLQSKHDLVETAYAQCDEVIAQYKAGTLETFPGCDELQTMENKLSGILSKVRQQAGDECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF K ++ P
Sbjct: 784 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R Y
Sbjct: 589 ETRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVMVNLDAACREY 635
>gi|346324489|gb|EGX94086.1| DNA-directed RNA polymerase III [Cordyceps militaris CM01]
Length = 1486
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 361 IMEQWEYLQTQIAMYVNSDVPGL---QQPGFGKAMRGFCQRLKGKQGRFRGNLSGKRVDF 417
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V IP+ VAK LTYPERV N L+Q V NG D PG
Sbjct: 418 SGRTVISPDPNLGIDEVAIPQLVAKNLTYPERVQRQNMAKLRQCVTNGCDVWPG 471
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 85/122 (69%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
ERL+S Y + + I + ++G+L+ PGC+ E+TLE I LS +R AG C+ L
Sbjct: 769 ERLVSIAYKQSDDLIESFKAGKLEKAPGCNLEQTLENSISGILSRVRQQAGDYCVDTLSR 828
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
+N PL+MA SGSKGS IN++QM+A VGQQ I G+RVP+GF +RSLPHF K ++ P SKG
Sbjct: 829 NNAPLIMAKSGSKGSDINVAQMVALVGQQIIGGQRVPDGFQDRSLPHFFKNARQPPSKGF 888
Query: 239 VK 240
VK
Sbjct: 889 VK 890
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 38/52 (73%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
+ +T + +PPP I+ P ALWTGKQ+F+++++PN++ + N ++K + ++ K
Sbjct: 628 DSQTRLDLPPPTIIAPVALWTGKQLFNVMMRPNKESNIRINFESKCKTFSGK 679
>gi|340503712|gb|EGR30247.1| hypothetical protein IMG5_137010 [Ichthyophthirius multifiliis]
Length = 1464
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 82/115 (71%), Gaps = 3/115 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQP---KSKSRGLIQRLKGKQGRFRGNLSGKRVD 58
I ++W LQ A ++N+ET +P M K R L QRLKGK+GRFRGNLSGKR +
Sbjct: 293 INQEWFLLQCSHAHYLNAETPNLPFKMDKDFGKKDIRALAQRLKGKKGRFRGNLSGKRSN 352
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
FT RTVISPDPN+ I V IPE++AKILT+PE V N + LK+LV+NGPDK+PG
Sbjct: 353 FTGRTVISPDPNIPIDNVVIPEYMAKILTFPETVASYNIDKLKKLVINGPDKYPG 407
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/141 (42%), Positives = 77/141 (54%), Gaps = 12/141 (8%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAME-----SGRLQTQPGCSA-----EETLEAVILKEL 161
P L E+ E KC + E +L T S ++ +EA I K L
Sbjct: 696 PQLNEQNEKQKDEAIQKCTYESKKFEREINAQQKLHTTSNTSEIAADKKKQVEAFISKTL 755
Query: 162 SVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNR 221
+ +R+ G C +EL P+NGPL+MA GSKGS N+SQMI CVGQQ I GKRVPNGF R
Sbjct: 756 NQVREDIGSNCNKELPPTNGPLIMATCGSKGSATNLSQMIGCVGQQIIGGKRVPNGFTGR 815
Query: 222 SLPHF--DKFSKDPASKGNVK 240
+LPHF D+ P + G V+
Sbjct: 816 TLPHFAKDEIFPHPEAMGFVR 836
Score = 46.2 bits (108), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVK 358
F + + +PPPA++ P +WTGKQ +L PNR + NL K + Y K
Sbjct: 561 FSDGNEQIQLPPPAVILPVEMWTGKQAIDAMLIPNRKNKIIVNLTLKEKCYNTK------ 614
Query: 359 DQFRERNTAC-KISHVTF 375
++R C K +V F
Sbjct: 615 ---KDREIMCPKDGYVVF 629
>gi|316997003|dbj|BAJ52629.1| RNA polymerase III largest subunit [Stephanoeca diplocostata]
Length = 933
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 85/126 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L R K L+ +GY++C+ I M +G L+ PG + E TLEA + LS IR AG C
Sbjct: 208 LQRKKALLVRDGYAQCDKLIAEMHAGELEPLPGSTVEGTLEAQLTTVLSDIRKEAGSLCK 267
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q+L N P+VMA GSKGS +N+SQMIACVGQQ + G R+P GF+NR+LPHF++ S DP
Sbjct: 268 QQLPRFNAPVVMARCGSKGSDLNMSQMIACVGQQTLGGNRIPAGFENRTLPHFERGSADP 327
Query: 234 ASKGNV 239
+KG V
Sbjct: 328 NAKGFV 333
Score = 45.8 bits (107), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNR---DCPVNANLKTKG 346
V +P PAI+KP ALWTGKQI S++LK N+ D V KT+
Sbjct: 73 VTMPAPAIVKPVALWTGKQIASVMLKTNKYATDIRVTVEKKTRA 116
>gi|115390328|ref|XP_001212669.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
terreus NIH2624]
gi|114195065|gb|EAU36765.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
terreus NIH2624]
Length = 1450
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 59/127 (46%), Positives = 84/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL++K L+ Y++C+ I ++G L+ PGC +T+E + LS +R AG C+
Sbjct: 724 LLQSKHDLVETAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQQAGDECI 783
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF K ++ P
Sbjct: 784 AQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHFPKNARQP 843
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 844 PSKGFVR 850
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 589 ETRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACREF 635
>gi|146302819|ref|YP_001190135.1| DNA-directed RNA polymerase subunit A' [Metallosphaera sedula DSM
5348]
gi|145701069|gb|ABP94211.1| DNA-directed RNA polymerase, subunit A' [Metallosphaera sedula DSM
5348]
Length = 886
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 267 IVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+P VA+ILT PE+V N E ++Q V+NGPDK PG
Sbjct: 327 SARTVISPDPNISIDEVGVPYDVAQILTVPEKVTKWNIERMRQYVINGPDKWPG 380
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/116 (37%), Positives = 69/116 (59%)
Query: 124 EGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPL 183
E K I + E G+L+ PG + EE+LE+ IL L +R+ AG+ L P N
Sbjct: 673 EARKKVNELIESYEKGQLEVIPGRTLEESLESYILDALDKLRNEAGEIATTYLDPFNNAY 732
Query: 184 VMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+MA +G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF P ++G +
Sbjct: 733 IMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYATRTLPHFKPGDITPEARGFI 788
>gi|119490427|ref|XP_001263030.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119411190|gb|EAW21133.1| DNA-directed RNA polymerase III largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1453
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IVECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L+R+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 717 DVYPSESLVRSKNELVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 777 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARQPPSKGFVR 850
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPA++KP+ LWTGKQ+F+++++P++D PV NL R +
Sbjct: 589 ETRFDLPPPAVLKPQMLWTGKQVFNILMRPSKDDPVLVNLDAACREF 635
>gi|70998935|ref|XP_754189.1| DNA-directed RNA polymerase III largest subunit [Aspergillus
fumigatus Af293]
gi|66851826|gb|EAL92151.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159127207|gb|EDP52322.1| DNA-directed RNA polymerase III largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1453
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 68/113 (60%), Positives = 82/113 (72%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IVECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVTRYNKEKLQQRVRNGTKKWPG 431
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L+R+K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 717 DVYPSESLVRSKNELVEVAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 777 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARQPPSKGFVR 850
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPA++KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 589 ETRFDLPPPAVLKPQMLWTGKQVFNILMRPNKDDPVLVNLDAACREF 635
>gi|169597423|ref|XP_001792135.1| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
gi|160707519|gb|EAT91146.2| hypothetical protein SNOG_01497 [Phaeosphaeria nodorum SN15]
Length = 1473
Score = 132 bits (332), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 84/114 (73%), Gaps = 3/114 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 320 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 377
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL I +V +P+ VAKILTYPE+V N + L++LVLNG +K+PG
Sbjct: 378 SGRTVIGPDPNLSIDEVAVPQRVAKILTYPEKVTRYNIKKLQKLVLNGANKYPG 431
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ L+ E Y+KC+ I+ + G+LQ GC E+T+E I LS +R
Sbjct: 738 DVTPGEVLNQKKQALVEEAYAKCDKLIKDFKEGKLQRAAGCDEEQTMEVQIGGILSGVRQ 797
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 798 AAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFHHRTLPHF 857
Query: 227 DKFSKDPASKGNV 239
K ++ PA+KG V
Sbjct: 858 PKAARQPAAKGFV 870
Score = 54.7 bits (130), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP I KP+ALWTGKQ+F+L+++PN+ V NL+ + Y
Sbjct: 616 IPPPVIWKPQALWTGKQVFNLLMRPNKQSRVLVNLEAGCKQY 657
>gi|414586610|tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 1030
Score = 132 bits (331), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 81/108 (75%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W++LQL ++NS+ +P +S+ RGL+QRLKGK GRFRGNLSGKR ++T RTVI
Sbjct: 304 WQYLQLQVVEYVNSDAPSLP-----ESQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP K+PG
Sbjct: 359 SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPG 406
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R K++ + GY KC I G L PGC+A +TLE I L+ IR
Sbjct: 703 DVQPGEHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRS 762
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF NR+LPHF
Sbjct: 763 IAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHF 822
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 823 PINSKTPAAKGFV 835
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
++ +P PA++KP LWTGKQ+FS++++PN V NL + + Y+
Sbjct: 565 NIDLPTPALIKPVELWTGKQLFSVLVRPNAHTKVFLNLAVQEKIYS 610
>gi|214028074|gb|ACJ63306.1| RNA polymerase III large subunit [Acorus calamus]
Length = 544
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 68/134 (50%), Positives = 88/134 (65%), Gaps = 4/134 (2%)
Query: 109 DKHPGL---LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
D PG LR KE + + Y KC+ I + G L QPGC+A +TLE+ I EL+ IR
Sbjct: 195 DVQPGHHLNLRKKETI-EKSYEKCDNLICSFNKGELVLQPGCNAAQTLESQITGELNKIR 253
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
C++ELH N PL+ + GSKGS INISQMIACVGQQ++ G+R P+GF +R+LPH
Sbjct: 254 QDTADVCMKELHWRNSPLITSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPH 313
Query: 226 FDKFSKDPASKGNV 239
F K SK P++KG V
Sbjct: 314 FPKSSKTPSAKGFV 327
Score = 46.6 bits (109), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
+ +P PA++KP LWTGKQ+FS++L+P V NL ++Y D+ + R
Sbjct: 72 IDLPTPALIKPMELWTGKQLFSVLLRPYAQMRVFVNLTLMEKSY---------DKRQGRE 122
Query: 366 TAC 368
T C
Sbjct: 123 TMC 125
>gi|300122349|emb|CBK22921.2| unnamed protein product [Blastocystis hominis]
Length = 1576
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 63/113 (55%), Positives = 80/113 (70%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I ++W+ LQ+ CA IN + GI ++ R L+QRLKGKQGRFRGNLSGKRV+F+
Sbjct: 278 IIMDNWDHLQILCAELINGDLPGISTLVKSAVPKRSLVQRLKGKQGRFRGNLSGKRVEFS 337
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +VG+P VA LTYPERV N E L+ +V NG ++PG
Sbjct: 338 GRTVISPDPNLSIEEVGVPIFVAMKLTYPERVTAFNIERLRGMVRNGASRYPG 390
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 64/132 (48%), Positives = 88/132 (66%), Gaps = 2/132 (1%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ LL+ ++++ Y+K + I SG+L +PGC+AE+TLE++ LS IRD
Sbjct: 667 PDER--LLQQMHEIVAKNYAKVDETIHQYNSGKLALRPGCNAEQTLESICSGLLSDIRDT 724
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
GK C+ L +N PL+MA GSKGS INI QMI CVGQQ ++G R+P+GF RSLPHF
Sbjct: 725 IGKMCMTNLPKTNYPLIMATCGSKGSAINICQMIYCVGQQVVSGNRIPDGFIQRSLPHFL 784
Query: 228 KFSKDPASKGNV 239
+K+P +KG V
Sbjct: 785 PNAKEPNAKGFV 796
>gi|214028082|gb|ACJ63310.1| RNA polymerase III large subunit [Liriodendron tulipifera]
Length = 546
Score = 131 bits (330), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 90/133 (67%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R K+ + +GY +C+ I +G L+ PGC+A +TLE+ I +L+ IR+
Sbjct: 195 DVQPGEHLNRNKKLEIEKGYKECDDLINRYNTGGLKLLPGCNAAQTLESNITGKLNDIRE 254
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
A K C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R PNGF +RSLPHF
Sbjct: 255 AAAKVCMASLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHF 314
Query: 227 DKFSKDPASKGNV 239
SK P++KG V
Sbjct: 315 PINSKTPSAKGFV 327
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 9/63 (14%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERN 365
+ +P PA++KP LWTGKQ+FS++++P+ V NL R Y D+ +++
Sbjct: 72 IDLPTPALLKPIELWTGKQLFSVLIRPHARMRVYLNLTLTERIY---------DKSKDKK 122
Query: 366 TAC 368
T C
Sbjct: 123 TMC 125
>gi|322696737|gb|EFY88525.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
acridum CQMa 102]
Length = 1017
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 77/191 (40%), Positives = 110/191 (57%), Gaps = 15/191 (7%)
Query: 109 DKHP--GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L + + L+S Y KC+ I ++G L+ PGC E+TLE I LS +R
Sbjct: 280 DVYPTASLRKEIDHLVSAAYKKCDNIITTFQAGSLEKAPGCDMEQTLENSISGVLSKVRQ 339
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ L N PL+MA SGSKGS IN++QM++ VGQQ I G+RVP+GF +RSLPHF
Sbjct: 340 QAGEHCINTLSRHNAPLIMAKSGSKGSDINVAQMVSLVGQQIIGGQRVPDGFQDRSLPHF 399
Query: 227 DKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRN 286
K ++ P+SKG VK Y ++ L + +L ++G G + KT +
Sbjct: 400 HKNARQPSSKGFVKNSFY------SALLPTEFLFHSISGR---EGLVDTAVKT----AET 446
Query: 287 GWLSSVLSSSL 297
G++S L SL
Sbjct: 447 GYMSRRLMKSL 457
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 31/41 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
+PPPAI+ PK LWTGKQIF+++++PN PV NL + ++
Sbjct: 158 LPPPAIIVPKTLWTGKQIFNVLMRPNNRSPVMVNLDARCKS 198
>gi|440634119|gb|ELR04038.1| hypothetical protein GMDG_06549 [Geomyces destructans 20631-21]
Length = 1478
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 78/114 (68%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPK--SKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQL A+++NS+ G+ QP RG QRLKGKQGRFRGNLSGKRVDF
Sbjct: 325 IMEQWEYLQLQIAMYVNSDVPGL---QQPGFGKAIRGFCQRLKGKQGRFRGNLSGKRVDF 381
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V IP VA +TYPERVH N L++ + GP K PG
Sbjct: 382 SGRTVISPDPNLSIEEVAIPILVATNMTYPERVHDRNIHKLRECIKRGPGKWPG 435
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 84/125 (67%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
L+++ Y++C+ I +SG+L+ GC+ EETLE I LS +R AG+ C+ L N
Sbjct: 734 LVTKAYAECDDLIVQFKSGKLEKATGCNMEETLENKISGILSRVRQQAGEFCINTLSKWN 793
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
PL+MA SGSKGS IN++QM+ VGQQ I+G RV +GF +R+LPHF K ++ P SKG V+
Sbjct: 794 SPLIMAKSGSKGSNINVAQMVTLVGQQMISGARVADGFQDRTLPHFPKNARQPPSKGFVR 853
Query: 241 FLRYG 245
+G
Sbjct: 854 NSFFG 858
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 35/45 (77%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ IPPPAI+KP+ALWTGKQ+FS++++PN+ PV NL K R Y
Sbjct: 595 DIDIPPPAIIKPEALWTGKQVFSVLMRPNKTSPVKVNLDAKCRDY 639
>gi|242073562|ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
gi|241937900|gb|EES11045.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
Length = 1391
Score = 131 bits (329), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 80/108 (74%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W++LQL ++NS+ +P S+ RGL+QRLKGK GRFRGNLSGKR ++T RTVI
Sbjct: 304 WQYLQLQVVEYVNSDAPCLP-----DSQHRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP K+PG
Sbjct: 359 SPDPNLKITEVAIPVLMARVLTYPERVSNYNIEKLRQCIRNGPFKYPG 406
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L R K++ + GY KC I G L PGC+A +TLE I L+ IR
Sbjct: 700 DVQPGEHLNRQKKKEIDGGYKKCHDLISLFAKGALALHPGCNAAQTLEHNITGVLNEIRS 759
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ LH N PL+M+ GSKGS INISQM+ACVGQQ++ G+R P+GF NR+LPHF
Sbjct: 760 IAGNVCMDTLHWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFLNRTLPHF 819
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 820 PINSKTPAAKGFV 832
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 283 RSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
RS L S L ++ ++ +P PA++KP LWTGKQ+FS++++PN V NL
Sbjct: 549 RSSFTLLCSYLGDAME------NIDLPTPALIKPIELWTGKQLFSVLVRPNAHTRVFLNL 602
Query: 343 KTKGRAYT 350
+ + Y+
Sbjct: 603 AVQEKIYS 610
>gi|429962254|gb|ELA41798.1| hypothetical protein VICG_01150 [Vittaforma corneae ATCC 50505]
Length = 1442
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/113 (56%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQL L INS+ + + P RG +QRLKGK GRFR NLSGKRVDF+
Sbjct: 270 IINEDWDYLQLQVNLLINSDLPSVSMVSTP---IRGFVQRLKGKTGRFRCNLSGKRVDFS 326
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPD NL + +VG+P H+AKILT PE+V N L +LV NG DK PG
Sbjct: 327 GRTVISPDANLSVEEVGVPMHIAKILTAPEKVTSFNIAFLTKLVNNGVDKWPG 379
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 12/126 (9%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ K+ ++ Y + + YI A+++ LE +L L+ IR+ G CL
Sbjct: 688 LIKEKQSVIDRVYKEVDSYINAIKN-----------PIDLEGKVLV-LNQIREECGSICL 735
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL SN +VM GSKGS IN+ QMIACVGQQ ++ R+P+G NR+LPHF S
Sbjct: 736 KELKKSNSIIVMQECGSKGSKINVGQMIACVGQQTVSDMRIPDGMINRTLPHFSAHSLSS 795
Query: 234 ASKGNV 239
SKG V
Sbjct: 796 ESKGFV 801
>gi|407917443|gb|EKG10751.1| RNA polymerase alpha subunit [Macrophomina phaseolina MS6]
Length = 1466
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 67/113 (59%), Positives = 78/113 (69%), Gaps = 3/113 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W++LQL AL++NS+ G L Q K RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 317 IMEQWDFLQLQIALYVNSDVPG--LQAQGVGKHIRGFCQRLKGKQGRFRGNLSGKRVDFS 374
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVI PDPNL I +V +PE VAK +TYPE+V N E L+ V G KHPG
Sbjct: 375 GRTVIGPDPNLSIEEVAVPERVAKNMTYPEKVSRYNLEKLRGCVRRGKFKHPG 427
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/133 (43%), Positives = 80/133 (60%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L+ K +L+ + Y + + + +G+L+ GC E T+E I L+ +R
Sbjct: 722 DVTPGSKLVERKTKLIQDAYIQAKKIVELYNTGKLERDAGCDEELTMENKISGVLNKVRA 781
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C EL N PL+MA GSKGS IN++QM+ACVGQQ I G RV +GF +R+LPHF
Sbjct: 782 EAGDICFSELTNWNSPLIMAKCGSKGSNINVAQMVACVGQQIIGGARVQDGFQDRTLPHF 841
Query: 227 DKFSKDPASKGNV 239
K + P +KG V
Sbjct: 842 AKGGRLPDAKGFV 854
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ +PPP I+KP+ALWTGKQ+++++++P + V NL + Y
Sbjct: 601 IDLPPPVILKPQALWTGKQVWNVLMRPYKASKVLVNLDAACKQY 644
>gi|14520831|ref|NP_126306.1| DNA-directed RNA polymerase subunit A' [Pyrococcus abyssi GE5]
gi|5458047|emb|CAB49537.1| rpoA1 DNA-directed RNA polymerase, subunit A' [Pyrococcus abyssi
GE5]
gi|380741373|tpe|CCE70007.1| TPA: DNA-directed RNA polymerase subunit alpha [Pyrococcus abyssi
GE5]
Length = 907
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 74/144 (51%), Positives = 96/144 (66%), Gaps = 15/144 (10%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSG+P K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGPDK+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG--- 380
Query: 117 AKERLLSEGYSKCEGYIRAMESGR 140
A + EG IR MES R
Sbjct: 381 ANYVIDPEGRR-----IRIMESNR 399
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 71/124 (57%), Gaps = 1/124 (0%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R KE ++ E + + I A + G L+ PG + EETLE+ I+ L+ RD+AG +
Sbjct: 682 RIKE-IIREAEERVQKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGSIAEKY 740
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N ++MA +G++G +NI+QM A +GQQ+I GKR+ GF R L HF +
Sbjct: 741 LGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARA 800
Query: 236 KGNV 239
KG V
Sbjct: 801 KGFV 804
>gi|330833901|ref|YP_004408629.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
gi|329566040|gb|AEB94145.1| DNA-directed RNA polymerase subunit A' [Metallosphaera cuprina
Ar-4]
Length = 886
Score = 131 bits (329), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 65/132 (49%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 267 IVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+P VA ILT PE+V N E +++ V+NGPDK PG ++R
Sbjct: 327 SARTVISPDPNISIDEVGVPYDVAMILTVPEKVTKWNIERMREYVINGPDKWPGANYVVR 386
Query: 117 AKERLLSEGYSK 128
+ R + Y K
Sbjct: 387 SDGRRIDLRYVK 398
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 67/116 (57%)
Query: 124 EGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPL 183
E + I + G L+ PG + EE+LE+ IL L +R+ AG+ L P N
Sbjct: 673 EARERVNDLIARYKKGELEVIPGRTLEESLESYILDTLDKLRNEAGEIATMHLDPFNNAY 732
Query: 184 VMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+MA +G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF P ++G +
Sbjct: 733 IMARTGARGSVLNITQMAAMLGQQSVRGERIKRGYSTRTLPHFKPNDISPEARGFI 788
>gi|451856837|gb|EMD70128.1| hypothetical protein COCSADRAFT_177734 [Cochliobolus sativus
ND90Pr]
Length = 1473
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 320 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 377
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVI PDPNL I +V +PE +AK LTYPE+V N + L++LV NG +K+PG A
Sbjct: 378 SGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPG---ANY 434
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQ 144
L +G +K G I + R T+
Sbjct: 435 ILDDQGPNKDRGKISLIALSRFDTK 459
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ L+ E Y+KC+ I+ + G+LQ PGC E+T+E I LS +R
Sbjct: 738 DVTPGEKLNKKKQDLVQEAYAKCDKLIKDFKEGKLQRDPGCDEEQTMENRIGGILSGVRQ 797
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 798 AAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFHHRTLPHF 857
Query: 227 DKFSKDPASKGNV 239
K ++ PASKG V
Sbjct: 858 PKAARQPASKGFV 870
Score = 53.9 bits (128), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP + KP+ALWTGKQ+F+L+++P + C V NL+ + +
Sbjct: 616 IPPPVVWKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQF 657
>gi|451993939|gb|EMD86411.1| hypothetical protein COCHEDRAFT_1186563 [Cochliobolus
heterostrophus C5]
Length = 1473
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 72/145 (49%), Positives = 94/145 (64%), Gaps = 6/145 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 320 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 377
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVI PDPNL I +V +PE +AK LTYPE+V N + L++LV NG +K+PG A
Sbjct: 378 SGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKVTRYNIDKLRRLVRNGSNKYPG---ANY 434
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQ 144
L +G +K G I + R T+
Sbjct: 435 ILDDQGPNKDRGKISLIALSRFDTK 459
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ L+ E Y+KC+ I+ + G+LQ PGC E+T+E I LS +R
Sbjct: 738 DVTPGEKLNKKKQDLVQEAYAKCDKLIKDFKEGKLQRDPGCDEEQTMENRIGGILSGVRQ 797
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 798 AAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFHHRTLPHF 857
Query: 227 DKFSKDPASKGNV 239
K ++ PASKG V
Sbjct: 858 PKAARQPASKGFV 870
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 32/42 (76%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP ++KP+ALWTGKQ+F+L+++P + C V NL+ + +
Sbjct: 616 IPPPVVLKPQALWTGKQVFNLLMRPYKKCRVLVNLEAACKQF 657
>gi|322702468|gb|EFY94113.1| DNA-directed RNA polymerase III largest subunit [Metarhizium
anisopliae ARSEF 23]
Length = 1364
Score = 130 bits (328), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 5/114 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVDF 59
I E WE+LQ A++INS+ G+ QP RG+ QRLKGKQGRFRGNLSGKRVDF
Sbjct: 232 IMEQWEYLQTQVAIYINSDVPGL---QQPGFGKPIRGICQRLKGKQGRFRGNLSGKRVDF 288
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVISPDPNL I +V +P+ VAK LTYPER N E L++ + NGP+ PG
Sbjct: 289 SGRTVISPDPNLGIDEVAVPQLVAKNLTYPERAQRQNIEKLRRCIRNGPNVWPG 342
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/142 (47%), Positives = 89/142 (62%), Gaps = 2/142 (1%)
Query: 109 DKHP--GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L + + L+S Y KC+ I ++G L+ PGC E+TLE I LS +R
Sbjct: 628 DVYPTASLRKEIDHLVSTAYKKCDNIIATFQAGSLEKAPGCDMEQTLENSISGVLSKVRQ 687
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ L N PL+MA SGSKGS IN++QM++ VGQQ I G+RVP+GF +RSLPHF
Sbjct: 688 QAGEHCINTLSRHNAPLIMAKSGSKGSDINVAQMVSLVGQQIIGGQRVPDGFQDRSLPHF 747
Query: 227 DKFSKDPASKGNVKFLRYGNRL 248
K ++ P SKG VK Y L
Sbjct: 748 HKNARQPPSKGFVKNSFYSGLL 769
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T + +PPPAI+ PK LWTGKQIF+++++PN PV NL + +++ +
Sbjct: 502 TQLDLPPPAIIVPKTLWTGKQIFNVLMRPNNRSPVMVNLDARCKSFVTR 550
>gi|389852852|ref|YP_006355086.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
gi|388250158|gb|AFK23011.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. ST04]
Length = 907
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 66/117 (56%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGPDK+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 64/106 (60%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + + I A + G L+ PG S EETLE+ I+ L+ RD+AG + L N
Sbjct: 686 VIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGAIAEKYLGMDN 745
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA +G++G +NI+QM A +GQQ+I GKR+ GF R L HF
Sbjct: 746 HTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFKGRVLSHF 791
>gi|422295501|gb|EKU22800.1| DNA-directed RNA polymerase III subunit RPC1, partial
[Nannochloropsis gaditana CCMP526]
Length = 535
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 69/83 (83%)
Query: 31 KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPE 90
+ K RGL QRLKGK GRFRGNLSGKRVDF+ RTVISPDPNL I QVG+P VAKI+TYPE
Sbjct: 22 EKKIRGLCQRLKGKSGRFRGNLSGKRVDFSGRTVISPDPNLAIDQVGVPLQVAKIMTYPE 81
Query: 91 RVHHANKEHLKQLVLNGPDKHPG 113
RV +N+E LK+LVLNGP HPG
Sbjct: 82 RVSASNRERLKRLVLNGPSHHPG 104
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 84/128 (65%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P LL K LL G+SKC+ IR E+G+L +PGC++ ++LE+ + L IR G+
Sbjct: 397 PVLLDLKRVLLEAGFSKCDEQIRLYETGKLPLKPGCNSLQSLESELNSVLGGIRRKCGEE 456
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
LQ+L N P +M GSKGS INISQM+A +GQQ++ GKR+ NGF NR+LPHF S
Sbjct: 457 ALQKLPWHNAPRIMTECGSKGSDINISQMMAILGQQSVGGKRIENGFVNRTLPHFRPESL 516
Query: 232 DPASKGNV 239
PA++G V
Sbjct: 517 FPAARGFV 524
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ +PPP+I+ P LWTGKQ+FSL++K + + NL+ + R Y+
Sbjct: 269 IDLPPPSIVWPHQLWTGKQVFSLLIKASHRVDCDVNLEMEERNYS 313
>gi|212223364|ref|YP_002306600.1| DNA-directed RNA polymerase subunit A' [Thermococcus onnurineus
NA1]
gi|212008321|gb|ACJ15703.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus onnurineus
NA1]
Length = 905
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E LK++VLNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNYEKLKKMVLNGPEKYPG 380
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R KE ++ E + I A ++G L+ PG + EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIKE-IIREAEERVNRLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 EKYLGMTNHAVIMAKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRERVLTHF 791
>gi|14591328|ref|NP_143406.1| DNA-directed RNA polymerase subunit A' [Pyrococcus horikoshii OT3]
gi|3257973|dbj|BAA30656.1| 907aa long hypothetical DNA-directed RNA polymerase subunit A'
[Pyrococcus horikoshii OT3]
Length = 907
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSG+P K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGPDK+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIQIAMELTVPEKVTEFNIEKLRKMVLNGPDKYPG 380
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + + I A + G L+ PG S EETLE+ I+ L+ RD+AG + L +N
Sbjct: 686 IIREAEERVQRLIEAYKRGELEPLPGKSLEETLESKIMAVLAEARDNAGSVAEKYLGMNN 745
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
++MA +G++G +NI+QM A +GQQ+I G+R+ GF R L HF +KG V
Sbjct: 746 HAVIMAKTGARGKILNITQMAALLGQQSIRGRRLYRGFKGRVLSHFKPGDLGARAKGFV 804
>gi|428186682|gb|EKX55532.1| hypothetical protein GUITHDRAFT_156792 [Guillardia theta CCMP2712]
Length = 1281
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 78/117 (66%), Gaps = 5/117 (4%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-----RGLIQRLKGKQGRFRGNLSGKR 56
I + W +LQL A + NSE G+ + KS RG QRLKGKQGRFRGNLSGKR
Sbjct: 273 IMDCWGFLQLKIAHYFNSELPGVQQQLTMKSSGKRKIMRGFAQRLKGKQGRFRGNLSGKR 332
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VD + RTVISPDPNL + QV +P H+AKILTYPERV N LK+ + NGPD PG
Sbjct: 333 VDHSGRTVISPDPNLHVRQVAVPVHMAKILTYPERVTSHNLVRLKKAIDNGPDIWPG 389
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 81/125 (64%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
+AK + + KC+ I +G+LQ PGC E +LE ++ KEL +R+ A +E
Sbjct: 695 KAKAEAMQKVKDKCDKLIADYRAGKLQRVPGCDLELSLEQMVGKELDDVRNLVASAAKKE 754
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
LH N LVMAL SKGS NISQMI C+GQQ + G R+PNGF R+LPHF+ ++K+PA+
Sbjct: 755 LHYDNKVLVMALCKSKGSNDNISQMIGCLGQQKLGGSRIPNGFIGRTLPHFEMYAKEPAA 814
Query: 236 KGNVK 240
KG V+
Sbjct: 815 KGFVE 819
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRD 335
+ PPAI+KP LWTGKQ+ S++LKP ++
Sbjct: 553 LEPPAIIKPMRLWTGKQLLSMLLKPRKN 580
>gi|226294925|gb|EEH50345.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
brasiliensis Pb18]
Length = 1458
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 90/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K+ L+ Y++C+ I+ +SG+L+ PGC + T+E +I LS +R
Sbjct: 716 DVYPGDRLLEEKKELVEHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGDLCISELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHARQPPAKGFVQ 849
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ +QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+S
Sbjct: 321 IIECWDHMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSS 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P VA +TYPE+V NKE L+Q V NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPG 431
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPP+I+KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 590 TRFDLPPPSILKPQMLWTGKQVFNILMRPNKDSPVLVNLDAACREF 635
>gi|225678717|gb|EEH17001.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides
brasiliensis Pb03]
Length = 1449
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 90/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K+ L+ Y++C+ I+ +SG+L+ PGC + T+E +I LS +R
Sbjct: 707 DVYPGDRLLEEKKELVEHAYAQCDEVIQKFKSGKLEKAPGCDEQMTMENIISGILSKVRQ 766
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 767 QAGDLCISELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 826
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 827 PKHARQPPAKGFVQ 840
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 64/112 (57%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ +QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+S
Sbjct: 312 IIECWDHMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSS 370
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P VA +TYPE+V NKE L+Q V NG PG
Sbjct: 371 RTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKEKLRQCVRNGTKTWPG 422
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPP+I+KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 581 TRFDLPPPSILKPQMLWTGKQVFNILMRPNKDSPVLVNLDAACREF 626
>gi|45935355|gb|AAS79699.1| RNA polymerase III large subunit [Nymphaea lotus]
Length = 545
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/126 (50%), Positives = 82/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + R++ ++C YI + G LQ QPG +A ETLEA+I ELS IR+ G+ C
Sbjct: 202 LAKKNSRVIQRAQNQCNSYIDSYNKGVLQPQPGSTAAETLEAMITSELSGIREKVGEVCT 261
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL+M+ GSKGS INI QMI CVGQQ++ G+R PNGF RSLPHF + K P
Sbjct: 262 KLLPWRNSPLIMSQCGSKGSLINICQMIGCVGQQSVGGRRAPNGFMERSLPHFLRNDKSP 321
Query: 234 ASKGNV 239
A+KG V
Sbjct: 322 AAKGFV 327
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
+ +P PA++KP LWTGKQ+FS++++P+ + NL K
Sbjct: 74 IDLPTPALLKPIELWTGKQLFSVLIRPHASMRIYVNLFLK 113
>gi|337283878|ref|YP_004623352.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
gi|334899812|gb|AEH24080.1| DNA-directed RNA polymerase subunit alpha [Pyrococcus yayanosii
CH1]
Length = 907
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 85/114 (74%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSGIP ++ + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRTLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGP+K+PG
Sbjct: 327 SARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMVLNGPEKYPG 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 66/111 (59%), Gaps = 1/111 (0%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R KE ++ E + E I A G L+ PG + EETLE+ I+ L+ RD+AG +
Sbjct: 682 RIKE-IIREAEERVERLIEAYRRGELEPLPGKTIEETLESKIMAVLAEARDNAGSVAERY 740
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
L N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 741 LGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|57641017|ref|YP_183495.1| DNA-directed RNA polymerase subunit A' [Thermococcus kodakarensis
KOD1]
gi|57159341|dbj|BAD85271.1| DNA-directed RNA polymerase, subunit A' [Thermococcus kodakarensis
KOD1]
Length = 906
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 93/141 (65%), Gaps = 9/141 (6%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSG+P + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVISPDP + I +VG+P VA LT PE+V N E LKQ VLNGP+K+PG A
Sbjct: 327 SARTVISPDPMISINEVGVPLAVAMELTVPEKVTEFNYEKLKQRVLNGPEKYPG---ANY 383
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+ EG IR MES R
Sbjct: 384 VIDPEGRR-----IRLMESNR 399
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E K + I A + G L+ PG + EETLE+ I+ L+ RD+AGK + L +N
Sbjct: 686 IIREAEEKVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAERYLGMNN 745
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 746 HAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|332157774|ref|YP_004423053.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
gi|331033237|gb|AEC51049.1| DNA-directed RNA polymerase subunit A' [Pyrococcus sp. NA2]
Length = 906
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSG+P K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L++++LNGPDK+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIEIAMELTVPEKVTEFNIEKLRKMILNGPDKYPG 380
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
AK+R+ + E + E I A + G L+ PG + EETLE+ I+ L+ RD+AG
Sbjct: 680 AKDRIREIIREAEERVEKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGAVAE 739
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L N ++MA +G++G +NI+QM A +GQQ+I GKR+ GF R L HF
Sbjct: 740 KYLGMDNHTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHF 792
>gi|1204085|emb|CAA47897.1| DNA-directed RNA polymerase [Euplotes octocarinatus]
Length = 511
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/108 (58%), Positives = 76/108 (70%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ A +IN++T G+PLNM R QRLKGKQGRFRGNLSGKRVDF+ RTVI
Sbjct: 319 WNQLQYTLAQYINADTPGLPLNMVGNKAIRAFCQRLKGKQGRFRGNLSGKRVDFSGRTVI 378
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPN +I QV +P +AKI T+P V+ N E LK+L+ NG + HPG
Sbjct: 379 SPDPNAEIGQVIVPVDMAKIFTFPVCVNSYNIEFLKKLIKNGSEVHPG 426
>gi|357148941|ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1392
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 78/108 (72%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ LQL +INS+ + ++RGL+QRLKGK GRFRGNLSGKR ++T RTVI
Sbjct: 304 WQLLQLQVVEYINSDAPSLT-----DPQNRGLVQRLKGKTGRFRGNLSGKRTEYTGRTVI 358
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP KHPG
Sbjct: 359 SPDPNLRITEVAIPVLMARVLTYPERVSYYNIEKLRQCIRNGPHKHPG 406
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGR--LQTQPGCSAEETLEAVILKELSVI 164
D PG L + K++ + +GY++C I G + PGC+ +TLE + L+ +
Sbjct: 698 DVQPGESLNQKKKKTIDQGYTECHDLIAVYSKGAPGAELHPGCNRAQTLEVRVSAILNQL 757
Query: 165 RDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLP 224
R+ AG+ C+ LH N PL+M+ GSKGS INISQM+ CVGQQ++ G+R P+GF +R+LP
Sbjct: 758 REKAGEHCMNTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGRRAPDGFIDRTLP 817
Query: 225 HFDKFSKDPASKGNV 239
HF SK PA+KG V
Sbjct: 818 HFPIHSKTPAAKGFV 832
Score = 49.3 bits (116), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 8/72 (11%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRER 364
++ +P PAI+KP LWTGKQ+FS++++PN V NL + + Y +K + R++
Sbjct: 565 NIDLPTPAIIKPLELWTGKQLFSVLVRPNACTKVYLNLTVEEKIY-------MKRRERDK 617
Query: 365 NTACKISHVTFC 376
N A + T C
Sbjct: 618 N-AVSVLEETMC 628
>gi|315230006|ref|YP_004070442.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
gi|315183034|gb|ADT83219.1| DNA-directed RNA polymerase subunit A' [Thermococcus barophilus MP]
Length = 906
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSG+P + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVPAAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L I +VG+P +A LT PE+V N E L+++VLNGP+K+PG
Sbjct: 327 SARTVISPDPMLSINEVGVPLAIAMELTVPEKVTDFNIEKLRKMVLNGPEKYPG 380
Score = 87.0 bits (214), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 70/111 (63%), Gaps = 1/111 (0%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R KE ++ E + + I A ++G L+ PG + EETLE+ I+ L+ RD+AGK Q
Sbjct: 682 RIKE-IIREAEERVKRLIEAYKAGELEPLPGKTLEETLESKIMAVLAEARDNAGKVAEQY 740
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 741 LGMNNFAVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGYRGRVLSHF 791
>gi|15920465|ref|NP_376134.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 884
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + + ++E GIP + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 265 IIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+P +AK LT PERV N E ++Q V+NGP+K PG ++R
Sbjct: 325 SARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIR 384
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 385 PDGRRIDLRYVK 396
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + + + Y K E I+ G L+ PG +AEE+LE IL+ L +R AG
Sbjct: 659 PQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKVAGDI 718
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L P N +MA++G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF
Sbjct: 719 ATKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQSVRGERIKRGYMTRTLPHFKPGDI 778
Query: 232 DPASKGNV 239
P ++G V
Sbjct: 779 SPDARGFV 786
>gi|341581877|ref|YP_004762369.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
gi|340809535|gb|AEK72692.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. 4557]
Length = 905
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E LK++VLNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPMAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPG 380
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 69/119 (57%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + I A ++G L+ PG + EETLE+ I+ L+ RD+AGK + L N
Sbjct: 686 IIREAEERVNRLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAERYLGMGN 745
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF +KG V
Sbjct: 746 HAVIMAKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRGRVLTHFKPGDLGARAKGFV 804
>gi|342306129|dbj|BAK54218.1| DNA-directed RNA polymerase subunit A' [Sulfolobus tokodaii str. 7]
Length = 880
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 89/132 (67%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + + ++E GIP + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVSTYFDNEIPGIPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+P +AK LT PERV N E ++Q V+NGP+K PG ++R
Sbjct: 321 SARTVISPDPNISIDEVGVPVAIAKTLTVPERVTKMNIERMRQYVINGPEKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 73/128 (57%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + + + Y K E I+ G L+ PG +AEE+LE IL+ L +R AG
Sbjct: 655 PQAFKEIDEQIEVAYKKVEELIKQYNEGTLELIPGRTAEESLEDHILETLDQLRKVAGDI 714
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L P N +MA++G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF
Sbjct: 715 ATKYLDPFNNVYIMAVTGARGSELNITQMTAMLGQQSVRGERIKRGYMTRTLPHFKPGDI 774
Query: 232 DPASKGNV 239
P ++G V
Sbjct: 775 SPDARGFV 782
>gi|449296109|gb|EMC92129.1| hypothetical protein BAUCODRAFT_78328 [Baudoinia compniacensis UAMH
10762]
Length = 1477
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 77/112 (68%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE+LQ+ A++I+ G+ + Q RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 328 VMEMWEFLQVQVAMYIDGNCPGLGRDSQWGRMMRGFCQRLKGKQGRFRGNLSGKRVDFSG 387
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P VA +TYPERV N E L++ +L G KHPG
Sbjct: 388 RTVISPDPNLGIDEVAVPVRVAMHMTYPERVTSYNIEKLRKRILRGTQKHPG 439
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 68/133 (51%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 109 DKHP-GLLRA-KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P G LR KE L+ Y+KC I+ G+LQ PGC E+T+E I LS +R
Sbjct: 739 DVYPSGKLREEKENLVKAAYAKCVHLIKLYNEGKLQRDPGCDEEQTMENQISGILSEVRQ 798
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C EL N PL MA GSKGS IN+SQM+A VGQQ I GKRV +GF +R+LPHF
Sbjct: 799 QCGNVCFSELSRFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGFQDRTLPHF 858
Query: 227 DKFSKDPASKGNV 239
K S+DP +KG V
Sbjct: 859 SKNSRDPPAKGFV 871
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 37/49 (75%)
Query: 302 HETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ V IPPPAI KP++LWTGKQ++++++KP+ PVN NL KG+ Y+
Sbjct: 610 EQRDVQIPPPAIFKPQSLWTGKQVWNVLMKPHPSYPVNVNLDAKGKQYS 658
>gi|221058803|ref|XP_002260047.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium knowlesi
strain H]
gi|193810120|emb|CAQ41314.1| DNA-directed RNA polymerase 3 largest subunit,putative [Plasmodium
knowlesi strain H]
Length = 1970
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 83/127 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ K+ LL EGY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 762 LIQKKKDLLQEGYEKVNKEIVLYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCN 821
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF+ KD
Sbjct: 822 QYLDHLNKPLIMFNSGAKGALINIAQMIACVGQQNVTGQRIKNGFINRTLPHFNFHCKDS 881
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 882 ESRGFVQ 888
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 308 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 367
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IPE +A LTYPE+V+ N E LK+ + NG + PG
Sbjct: 368 VISPDPNISIDEVVIPEIIAMRLTYPEKVNRYNIERLKKFIKNGTNTWPG 417
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
F + + + +P PAI+KPK LWTGKQ+ S+++KPNR N + K R Y+ K
Sbjct: 625 FSDAKVDIELPVPAILKPKELWTGKQLISVLIKPNRKENTIINFEMKEREYSTK 678
>gi|119719203|ref|YP_919698.1| DNA-directed RNA polymerase subunit A' [Thermofilum pendens Hrk 5]
gi|119524323|gb|ABL77695.1| DNA-directed RNA polymerase, subunit A' [Thermofilum pendens Hrk 5]
Length = 888
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H A + ++E GIP + R L QRLKGK+GRFRG+L+GKRVDF
Sbjct: 265 VIEDLWNLLQFHVATYFDNELPGIPPARHRSGRPLRTLAQRLKGKEGRFRGSLAGKRVDF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDPNL I +VG+P VAK+LT PE+V N E L++LV+NGPD PG
Sbjct: 325 SSRTVISPDPNLSINEVGVPIDVAKVLTVPEKVTPWNIEKLRKLVINGPDVWPG 378
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 73/119 (61%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L E K E IR ESG LQ PG + +ETLE +I+ L+ R AG+ + L N
Sbjct: 668 ILQEAEKKVEDLIRQYESGELQPMPGKTRKETLEDLIMNVLAEARTRAGEVTSKHLGLLN 727
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
++MA +G++GS +N++QM A VGQQ++ GKR+ G+ R+LPHF K P +KG V
Sbjct: 728 HAVIMAKTGARGSMLNLTQMAAVVGQQSVRGKRIERGYTGRALPHFVKGDLSPLAKGFV 786
>gi|390960610|ref|YP_006424444.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
gi|390518918|gb|AFL94650.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. CL1]
Length = 905
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E LK++VLNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPIAVAMELTVPEKVTEFNFEKLKKMVLNGPEKYPG 380
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 66/106 (62%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + E I A ++G L+ PG + EETLE+ I+ L+ RD+AGK + L N
Sbjct: 686 IIREAEERVERLIEAYKNGELEPLPGKTLEETLESNIMAVLAEARDNAGKVAEKYLGMGN 745
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 746 HAVIMAKTGARGKMLNITQMAAMLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|240103982|ref|YP_002960291.1| DNA-directed RNA polymerase subunit A' [Thermococcus gammatolerans
EJ3]
gi|239911536|gb|ACS34427.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Thermococcus
gammatolerans EJ3]
Length = 905
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSGIP + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP + I +VG+P +A LT PE+V N E LKQ VLNGP+K+PG
Sbjct: 327 SARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLKQRVLNGPEKYPG 380
Score = 84.7 bits (208), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R KE ++ E + I A + G L+ PG + EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIKE-IIREAEERVNKLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 ERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|156937038|ref|YP_001434834.1| DNA-directed RNA polymerase subunit A' [Ignicoccus hospitalis
KIN4/I]
gi|156566022|gb|ABU81427.1| DNA-directed RNA polymerase, subunit A' [Ignicoccus hospitalis
KIN4/I]
Length = 889
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 73/155 (47%), Positives = 94/155 (60%), Gaps = 4/155 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
MI+ W LQ H A F ++E GIP K R L QRLKGK+GRFR NLSGKRVDF
Sbjct: 270 MIENLWGLLQYHVATFFDNEIPGIPPARHRSGKPLRTLAQRLKGKEGRFRSNLSGKRVDF 329
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVISPDPN+ I +VG+P VAK LT P +V N E +++LV+NGPDK PG A
Sbjct: 330 SARTVISPDPNISINEVGVPIEVAKTLTVPVKVTPWNIEEMRKLVINGPDKWPG---ANY 386
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLE 154
++ +G Y + + QPG + E L+
Sbjct: 387 VIMKDGRRIDLRYAKDRKIIAESLQPGWTVERHLQ 421
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 78/126 (61%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E +L E Y + E I ++G L+ PG + EETLE +I+ L+ RD AG+ + L P
Sbjct: 671 EEVLKEAYEEVEKLIEDFKNGLLEPLPGRTLEETLELMIMDVLAKARDKAGEIAAKYLSP 730
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N ++MA +G++G+ +N++QM A +GQQ++ G+R+ G+ R+LPHF+ P ++G
Sbjct: 731 LNNAVIMAKAGARGNILNLTQMAALLGQQSVRGERIKRGYRKRTLPHFEWGDISPDARGF 790
Query: 239 VKFLRY 244
VK Y
Sbjct: 791 VKHSFY 796
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 25/37 (67%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKT 344
+P PAI+ PK +WTGKQ+FS+ L + + AN+ T
Sbjct: 543 LPEPAILSPKTVWTGKQLFSVFLPKDFNYSGKANIST 579
>gi|8777343|dbj|BAA96933.1| DNA-directed RNA polymerase II largest chain [Arabidopsis thaliana]
Length = 1383
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 109 DKHPGLLRAKER--LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG +KER + GY +C I G LQ + G ++LEA I L+ IR+
Sbjct: 703 DVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIRE 762
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
GKAC+ LH N PL+M+ GSKGS INISQM+ACVGQQ +NG R P+GF +RSLPHF
Sbjct: 763 ATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHF 822
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 823 PRMSKSPAAKGFV 835
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ +Q+ A +INSE G N + G++QRLKGK GRFR NLSGKRV+FT RTVI
Sbjct: 312 WDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 370
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +VGIP +A+ILT+PE V N E L+Q V NGP+K+PG
Sbjct: 371 SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
S+ +P P I+KP LWTGKQIFS++L+PN V L K + +
Sbjct: 577 SIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNF 621
>gi|357138371|ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
[Brachypodium distachyon]
Length = 1400
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + K+ ++ EGY +C I G L+ QPGCS +TLE+ I L+ +R+
Sbjct: 703 DVQPGQSLNKKKKVIIDEGYEECNKLIALYSKGHLKPQPGCSRAQTLESQISCVLNKLRE 762
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ LH N PL+M+ GSKGS INISQM+ CVGQQ++ G R PNGF +R+LPHF
Sbjct: 763 TAGDDCMSTLHWRNSPLIMSQCGSKGSPINISQMVVCVGQQSVGGCRAPNGFIDRTLPHF 822
Query: 227 DKFSKDPASKGNV 239
SK PA+KG V
Sbjct: 823 PINSKTPAAKGFV 835
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 77/108 (71%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
WE LQ + +INS+ S + SK GLIQRLKGK GRFRGNLSGKR + T RTVI
Sbjct: 309 WEQLQDNVIEYINSDASSLQ-----DSKDCGLIQRLKGKTGRFRGNLSGKRTEHTGRTVI 363
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +V IP +A++LTYPERV + N E L+Q + NGP KHPG
Sbjct: 364 SPDPNLRITEVAIPVLMARVLTYPERVTYYNIEKLRQCIRNGPHKHPG 411
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
++ +P PAI+KP LWTGKQ+FS++++PN V NL + + Y
Sbjct: 570 NIDLPTPAIIKPVELWTGKQLFSVLVRPNACTKVFLNLTVEEKVY 614
>gi|71665443|ref|XP_819691.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma cruzi
strain CL Brener]
gi|70885004|gb|EAN97840.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 66/135 (48%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A I+S G P +M+ + + QRLKGK GRFRGNLSGKRVDF+ R+
Sbjct: 312 ETWEMLQMRAARLIDSALPGFPPHMR-TADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
VISPDPNL + ++ +P VA++LTYP+RV +N E +++LV NGP+ HPG + L
Sbjct: 371 VISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY--LAQ 428
Query: 124 EGYSKCEGYIRAMES 138
EG K + R ES
Sbjct: 429 EGSKKSLNHERDRES 443
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K +L+ ++ C+ I + ++GR++ PG + ++LEA + ELS +RD G A
Sbjct: 708 PLLNEQKAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
++ L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ N F +RSLPHF +F
Sbjct: 768 AVETLSVDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFE 827
Query: 231 KDPASKGNV 239
+ P+++G V
Sbjct: 828 EAPSARGFV 836
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 283 RSRNGWL-SSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNAN 341
RS+ W+ S L +FR +P P I+KP LWTGKQ+F LIL+P+ + V N
Sbjct: 565 RSQMSWMVSHWLGPVTQFR-------LPIPTILKPTELWTGKQVFELILRPSPEVNVLLN 617
Query: 342 LKTKGRAYTFK 352
L+ + YT K
Sbjct: 618 LEAATKFYTKK 628
>gi|334188504|ref|NP_001190573.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009887|gb|AED97270.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
Length = 1391
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 109 DKHPGLLRAKER--LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG +KER + GY +C I G LQ + G ++LEA I L+ IR+
Sbjct: 720 DVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIRE 779
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
GKAC+ LH N PL+M+ GSKGS INISQM+ACVGQQ +NG R P+GF +RSLPHF
Sbjct: 780 ATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHF 839
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 840 PRMSKSPAAKGFV 852
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ +Q+ A +INSE G N + G++QRLKGK GRFR NLSGKRV+FT RTVI
Sbjct: 322 WDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 380
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +VGIP +A+ILT+PE V N E L+Q V NGP+K+PG
Sbjct: 381 SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 428
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
S+ +P P I+KP LWTGKQIFS++L+PN V L K + +
Sbjct: 587 SIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNF 631
>gi|145359470|ref|NP_200812.2| nuclear RNA polymerase C1 [Arabidopsis thaliana]
gi|332009886|gb|AED97269.1| nuclear RNA polymerase C1 [Arabidopsis thaliana]
Length = 1376
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 109 DKHPGLLRAKER--LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG +KER + GY +C I G LQ + G ++LEA I L+ IR+
Sbjct: 703 DVQPGEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIRE 762
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
GKAC+ LH N PL+M+ GSKGS INISQM+ACVGQQ +NG R P+GF +RSLPHF
Sbjct: 763 ATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHF 822
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 823 PRMSKSPAAKGFV 835
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/108 (57%), Positives = 78/108 (72%), Gaps = 1/108 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ +Q+ A +INSE G N + G++QRLKGK GRFR NLSGKRV+FT RTVI
Sbjct: 312 WDTVQIEVARYINSEVRGCQ-NQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTVI 370
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +VGIP +A+ILT+PE V N E L+Q V NGP+K+PG
Sbjct: 371 SPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
S+ +P P I+KP LWTGKQIFS++L+PN V L K + +
Sbjct: 577 SIDLPTPTILKPIELWTGKQIFSVLLRPNASIRVYVTLNVKEKNF 621
>gi|198457029|ref|XP_002136278.1| GA24006 [Drosophila pseudoobscura pseudoobscura]
gi|198142596|gb|EDY71323.1| GA24006 [Drosophila pseudoobscura pseudoobscura]
Length = 234
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 59/84 (70%), Positives = 71/84 (84%)
Query: 157 ILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPN 216
+L+ELS IR+ A K C ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPN
Sbjct: 1 MLRELSGIREQAAKTCFAELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPN 60
Query: 217 GFDNRSLPHFDKFSKDPASKGNVK 240
GF+NR+LPHFD+ S PA++G V+
Sbjct: 61 GFENRALPHFDRHSAIPAARGFVQ 84
>gi|297793561|ref|XP_002864665.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
gi|297310500|gb|EFH40924.1| hypothetical protein ARALYDRAFT_496142 [Arabidopsis lyrata subsp.
lyrata]
Length = 1376
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 64/108 (59%), Positives = 80/108 (74%), Gaps = 1/108 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W+ +Q A +INSE G+ N K+ GL+QRLKGKQGRFR NLSGKRV++T RTVI
Sbjct: 312 WDTVQSEVAKYINSEVRGVQ-NQPEKTPLSGLLQRLKGKQGRFRANLSGKRVEYTGRTVI 370
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDPNL+I +VGIP +A+ILT+PE V N E L+Q V NGP+K+PG
Sbjct: 371 SPDPNLKITEVGIPILMARILTFPECVSRHNIEKLRQCVRNGPNKYPG 418
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/133 (50%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 109 DKHPGLLRAKER--LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG KER + GY +C I G LQ + G ++LEA I L+ IR+
Sbjct: 703 DVQPGEELNKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIRE 762
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
GKAC+ LH N PL+M+ GSKGS INISQM+ACVGQQ +NG R P+GF +RSLPHF
Sbjct: 763 ATGKACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHF 822
Query: 227 DKFSKDPASKGNV 239
+ SK PA+KG V
Sbjct: 823 PRMSKSPAAKGFV 835
Score = 47.4 bits (111), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
++ +P P I+KP LWTGKQ+FS++L+PN V L K + +
Sbjct: 577 AIDLPTPTILKPIELWTGKQLFSVLLRPNASVRVYVTLNVKEKNF 621
>gi|157875469|ref|XP_001686126.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania major strain Friedlin]
gi|68129200|emb|CAJ07737.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania major strain Friedlin]
Length = 1582
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Query: 72 QIYQVGIPEHVAKILTYPERVHHANKEHLKQ----LVLNGPDKHPGLLRAKERLLSEGYS 127
++Y +G E A ++ R+ +L+ L L P L K +L+ +
Sbjct: 662 RLYALGGGEQTATCMS---RIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFD 718
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP-SNGPLVMA 186
KC+ I ++GRL +PG S +++LEA++ ELS +RD G A +Q L SN PL+M
Sbjct: 719 KCDRLISLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMV 778
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SGSKGS +N +QM+ACVGQQ ++GKR+ N F +R+LPHF +F++DPAS+G V
Sbjct: 779 NSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFV 831
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ A +++ G P +++ + + QR+KGKQGRFRGNLSGKRVDF+ R+
Sbjct: 307 ETWELLQTRVARLLDAALPGFPSHLR-TVECKSYAQRMKGKQGRFRGNLSGKRVDFSGRS 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
VISPDPNL+I ++ +P VA++LTYP+RV N + +++LV NGP HPG L
Sbjct: 366 VISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGAL 417
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 302 HETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+ET +P PAI+KP LWTGKQ+F LIL+P + + NL+ K R Y+
Sbjct: 573 NETQYALPIPAILKPAELWTGKQLFELILRPTPETQLLLNLEAKARFYS 621
>gi|398022082|ref|XP_003864203.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
gi|322502438|emb|CBZ37521.1| DNA-directed RNA polymerase III largest subunit , putative
[Leishmania donovani]
Length = 1590
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Query: 72 QIYQVGIPEHVAKILTYPERVHHANKEHLKQ----LVLNGPDKHPGLLRAKERLLSEGYS 127
++Y +G E A ++ R+ +L+ L L P L K +L+ +
Sbjct: 662 RLYALGGGEQTATCMS---RIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFD 718
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP-SNGPLVMA 186
KC+ I ++GRL +PG S +++LEA++ ELS +RD G A +Q L SN PL+M
Sbjct: 719 KCDRLISLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMV 778
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SGSKGS +N +QM+ACVGQQ ++GKR+ N F +R+LPHF +F++DPAS+G V
Sbjct: 779 NSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFV 831
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ A +++ G P +++ + + QR+KGKQGRFRGNLSGKRVDF+ R+
Sbjct: 307 ETWELLQTRVARLLDAALPGFPSHLR-TVECKSYAQRMKGKQGRFRGNLSGKRVDFSGRS 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
VISPDPNL+I ++ +P VA++LTYP+RV N + +++LV NGP HPG L
Sbjct: 366 VISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGAL 417
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 254 LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAI 313
L +AYLV +AR L + ++ S WL +ET +P PAI
Sbjct: 545 LTAAYLV-------TARDALFDRASFTQMVSH--WLG-----------NETQYTLPIPAI 584
Query: 314 MKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+KP LWTGKQ+F LIL+P + + NL+ K R Y+
Sbjct: 585 LKPAELWTGKQLFELILRPTPETQLLLNLEAKARFYS 621
>gi|146098608|ref|XP_001468425.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania infantum JPCM5]
gi|134072793|emb|CAM71509.1| putative DNA-directed RNA polymerase III largest subunit
[Leishmania infantum JPCM5]
Length = 1590
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 105/173 (60%), Gaps = 8/173 (4%)
Query: 72 QIYQVGIPEHVAKILTYPERVHHANKEHLKQ----LVLNGPDKHPGLLRAKERLLSEGYS 127
++Y +G E A ++ R+ +L+ L L P L K +L+ +
Sbjct: 662 RLYALGGGEQTATCMS---RIAQFTARYLQNYGFSLGLGDVSPTPSLNEKKAAVLAVSFD 718
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP-SNGPLVMA 186
KC+ I ++GRL +PG S +++LEA++ ELS +RD G A +Q L SN PL+M
Sbjct: 719 KCDRLISLAKTGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMV 778
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SGSKGS +N +QM+ACVGQQ ++GKR+ N F +R+LPHF +F++DPAS+G V
Sbjct: 779 NSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFV 831
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ A +++ G P +++ + + QR+KGKQGRFRGNLSGKRVDF+ R+
Sbjct: 307 ETWELLQTRVARLLDAALPGFPSHLR-TVECKSYAQRMKGKQGRFRGNLSGKRVDFSGRS 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
VISPDPNL+I ++ +P VA++LTYP+RV N + +++LV NGP HPG L
Sbjct: 366 VISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGAL 417
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 254 LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAI 313
L +AYLV +AR L + ++ S WL +ET +P PAI
Sbjct: 545 LTAAYLV-------TARDALFDRASFTQMVSH--WLG-----------NETQYTLPIPAI 584
Query: 314 MKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+KP LWTGKQ+F LIL+P + + NL+ K R Y+
Sbjct: 585 LKPAELWTGKQLFELILRPTPETQLLLNLEAKARFYS 621
>gi|401882581|gb|EJT46834.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon
asahii var. asahii CBS 2479]
Length = 1433
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
+W+ L AL+INS+T GI N RG +QRLKGKQGRFRGNLSGKRVDF+ RTV
Sbjct: 325 NWDTLSQMVALYINSQTPGI--NTTGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTV 382
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
I PDPNL+I +V +PE +A L+YPERV N E +++ V+NG HPG
Sbjct: 383 IGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPG 431
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K++++ E Y KCE I + G+LQ PGC E TLE +I LS +R+
Sbjct: 700 DVIPGEMLQSNKDQMVEEAYEKCESNIELAKRGKLQNAPGCDQETTLEQLISGILSGVRE 759
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N PL+MA GSK VGQQ I G RVPNGF +RSLPHF
Sbjct: 760 AVGDVCMNELSRHNAPLIMATCGSK------------VGQQIIAGHRVPNGFQDRSLPHF 807
Query: 227 DKFSKDPASKGNVK 240
K SK+P SKG V+
Sbjct: 808 RKKSKNPPSKGFVR 821
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+ + +PPP I KP LWTGKQ+++L+++PN+ V NL+ K R
Sbjct: 570 DLEIDLPPPTIWKPVRLWTGKQVYNLLMRPNKKSKVLINLEAKCR 614
>gi|406700618|gb|EKD03783.1| DNA-directed RNA polymerase iii largest subunit [Trichosporon
asahii var. asahii CBS 8904]
Length = 1433
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/109 (56%), Positives = 77/109 (70%), Gaps = 2/109 (1%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
+W+ L AL+INS+T GI N RG +QRLKGKQGRFRGNLSGKRVDF+ RTV
Sbjct: 325 NWDTLSQMVALYINSQTPGI--NTTGSKPIRGFVQRLKGKQGRFRGNLSGKRVDFSGRTV 382
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
I PDPNL+I +V +PE +A L+YPERV N E +++ V+NG HPG
Sbjct: 383 IGPDPNLRIDEVAVPEKIAVKLSYPERVTDYNMEAMRKAVVNGSKMHPG 431
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 77/134 (57%), Gaps = 14/134 (10%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K++++ E Y KCE I + G+LQ PGC E TLE +I LS +R+
Sbjct: 700 DVIPGEMLQSNKDQMVEEAYEKCESNIELAKRGKLQNAPGCDQETTLEQLISGILSGVRE 759
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G C+ EL N PL+MA GSK VGQQ I G RVPNGF +RSLPHF
Sbjct: 760 AVGDVCMNELSRHNAPLIMATCGSK------------VGQQIIAGHRVPNGFQDRSLPHF 807
Query: 227 DKFSKDPASKGNVK 240
K SK+P SKG V+
Sbjct: 808 RKKSKNPPSKGFVR 821
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 31/45 (68%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
+ + +PPP I KP LWTGKQ+++L+++PN+ V NL+ K R
Sbjct: 570 DLEIDLPPPTIWKPVRLWTGKQVYNLLMRPNKKSKVLINLEAKCR 614
>gi|374633177|ref|ZP_09705544.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
gi|373524661|gb|EHP69538.1| DNA-directed RNA polymerase subunit A'' [Metallosphaera
yellowstonensis MK1]
Length = 886
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 267 IVEDLWDLLQYHVATYFDNEIPGLPTSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+P +A+ILT PE+V N + L++ V+NGP+K PG
Sbjct: 327 SARTVISPDPNISIDEVGVPYDIAQILTVPEKVTKWNLDRLREYVINGPEKWPG 380
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 68/107 (63%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + G+L+ PG + EETLE+ IL L +R+ AG+ L P N +MA +G++G
Sbjct: 682 IELYKQGKLEPIPGRTMEETLESYILDTLDKLRNEAGEIATAYLDPFNNAYIMARTGARG 741
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +NI+QM A +GQQ++ G+R+ G+ +R+LPHF + P ++G +
Sbjct: 742 SVLNITQMAAMLGQQSVRGERIKRGYSDRTLPHFRRGDISPEARGFI 788
>gi|326435508|gb|EGD81078.1| RNA polymerase III large subunit [Salpingoeca sp. ATCC 50818]
Length = 1377
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 62/113 (54%), Positives = 81/113 (71%), Gaps = 4/113 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E WE LQ+ A+ N + + + MQ + K RG QRLKGKQGRFRGNLSGKRV+F+
Sbjct: 304 VMETWEQLQISSAILYNGQLTNL---MQTQKKPIRGFFQRLKGKQGRFRGNLSGKRVNFS 360
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ + +V +P HV +ILTYPE+V N E L+++VLNGP +PG
Sbjct: 361 GRTVISPDPNVGVDEVCVPYHVCRILTYPEQVTKHNLEKLRKMVLNGPKVYPG 413
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 62/119 (52%), Positives = 87/119 (73%), Gaps = 6/119 (5%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+C+GYI+ +E G ++ QPGC+AE+T+EA I ++LS IR+ AG C Q L SN P +MA
Sbjct: 732 RCKGYIQQLEKGNVECQPGCTAEQTVEAKIKQDLSAIREDAGLLCRQLLPNSNAPKIMAK 791
Query: 188 SGSKGSFI-----NISQMIACVGQQAINGKRVPNGFDNRSLPHF-DKFSKDPASKGNVK 240
GSKGS I ++ QMIACVGQQ ING+R+P+GFD R LPHF ++ S++P ++G V+
Sbjct: 792 CGSKGSNIPSLRLHLRQMIACVGQQIINGERIPDGFDGRPLPHFKEEKSREPVARGFVE 850
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS 354
E V +PPP I+KP LWTGKQ+ SL+LKPN+ P L+ R+Y ++
Sbjct: 570 ELLVHLPPPTIIKPMKLWTGKQVISLLLKPNKFDPTEIYLQANNRSYDKDYA 621
>gi|401016|sp|P31813.1|RPOA1_THECE RecName: Full=DNA-directed RNA polymerase subunit A'
gi|48141|emb|CAA47723.1| Subunit A' of DNA-dependent RNA polymerase [Thermococcus celer]
Length = 905
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPG 380
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R +E ++ E + I A +G L+ PG + EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIRE-IIREAEERVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L SN ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 ERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHF 791
>gi|295668637|ref|XP_002794867.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226285560|gb|EEH41126.1| DNA-directed RNA polymerase III subunit RPC1 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 1425
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K+ L+ Y +C+ I+ +SG L+ PGC + T+E +I LS +R
Sbjct: 684 DVYPGDRLLEEKKELVEHAYVQCDEVIQKFKSGNLEKAPGCDEQMTMENIISGILSKVRQ 743
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 744 QAGDLCISELSRWNTPLIMATSGSKGSNINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 803
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 804 PKHARQPPAKGFVQ 817
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 77/112 (68%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+ +QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+S
Sbjct: 289 IIECWDHMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSS 347
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P VA +TYPE+V NK+ L+Q V NG PG
Sbjct: 348 RTVISPDPNLRIDEVAVPILVAMNMTYPEQVTRYNKDKLRQCVRNGTKTWPG 399
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
T +PPP+I+KP+ LWTGKQ+F+++++PN+D PV NL R +
Sbjct: 558 TRFDLPPPSILKPQMLWTGKQVFNILMRPNKDSPVLVNLDAACREF 603
>gi|239614510|gb|EEQ91497.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
dermatitidis ER-3]
Length = 1456
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ + Y++C+ I+ +G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGDKLLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGAICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHARQPPAKGFVR 849
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF++
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSA 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ +A +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L + +T +PPP+++KP+ LWTGKQIF+++++PN+ PV NL R +
Sbjct: 583 LYMLQSDTRFDLPPPSVIKPQMLWTGKQIFNVLMRPNKQSPVLVNLDAACRGF 635
>gi|221482258|gb|EEE20613.1| DNA-directed RNA polymerase III largest subunit, putative
[Toxoplasma gondii GT1]
Length = 1747
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 87/128 (67%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P LL AK+ +L+ GY+ I+ + G LQ PGC+ E+TLE + L +R+ AGKA
Sbjct: 783 PTLLAAKKDILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKA 842
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C + LHP N PL+M SG+KG+ INI+QMIACVGQQ ++G+R+ NGF +R+LPHF +
Sbjct: 843 CNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCR 902
Query: 232 DPASKGNV 239
D S+G V
Sbjct: 903 DAKSRGFV 910
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
WE+LQL C IN++ + + K+ S RG+ QRLKGK+GRFRGNLSGKRVDF+ R
Sbjct: 382 WEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGR 441
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN +Y+V +PE VAK LT+PERV+ N E L+ VL G PG
Sbjct: 442 TVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPG 492
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + + V +PPP I+KP LWTGKQ+ S++L+PNR+ V N + K R ++
Sbjct: 645 FTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVNFQLKEREFS 696
>gi|237842187|ref|XP_002370391.1| DNA-directed RNA polymerase III largest subunit, putative
[Toxoplasma gondii ME49]
gi|211968055|gb|EEB03251.1| DNA-directed RNA polymerase III largest subunit, putative
[Toxoplasma gondii ME49]
gi|221502846|gb|EEE28560.1| DNA-directed RNA polymerase III largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1746
Score = 128 bits (321), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 87/128 (67%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P LL AK+ +L+ GY+ I+ + G LQ PGC+ E+TLE + L +R+ AGKA
Sbjct: 782 PTLLAAKKDILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKA 841
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C + LHP N PL+M SG+KG+ INI+QMIACVGQQ ++G+R+ NGF +R+LPHF +
Sbjct: 842 CNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCR 901
Query: 232 DPASKGNV 239
D S+G V
Sbjct: 902 DAKSRGFV 909
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
WE+LQL C IN++ + + K+ S RG+ QRLKGK+GRFRGNLSGKRVDF+ R
Sbjct: 381 WEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGR 440
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN +Y+V +PE VAK LT+PERV+ N E L+ VL G PG
Sbjct: 441 TVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPG 491
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + + V +PPP I+KP LWTGKQ+ S++L+PNR+ V N + K R ++
Sbjct: 644 FTDGLSRVDLPPPTILKPVELWTGKQVISVLLRPNRNSFVMVNFQLKEREFS 695
>gi|389603516|ref|XP_001564320.2| putative DNA-directed RNA polymerase III largest subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322504664|emb|CAM38379.2| putative DNA-directed RNA polymerase III largest subunit
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 1581
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 70/173 (40%), Positives = 104/173 (60%), Gaps = 8/173 (4%)
Query: 72 QIYQVGIPEHVAKILTYPERVHHANKEHLKQ----LVLNGPDKHPGLLRAKERLLSEGYS 127
++Y +G E A ++ R+ +L+ L L P L K +L+ +
Sbjct: 662 RLYALGGGEQTATCMS---RIAQFTARYLQNYGFSLGLGDVSPTPSLSEKKAAVLAVSFD 718
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP-SNGPLVMA 186
KC+ I + GRL +PG S +++LEA++ ELS +RD G A +Q L SN PL+M
Sbjct: 719 KCDRLISLAKMGRLIPKPGMSVKQSLEAMLNAELSQVRDACGSAAVQALDAKSNAPLIMV 778
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
SGSKGS +N +QM+ACVGQQ ++GKR+ N F +R+LPHF +F++DPAS+G V
Sbjct: 779 NSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASRGFV 831
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ A +++ G P +++ ++ + QR+KGKQGRFRGNLSGKRVDF+ R+
Sbjct: 307 ETWELLQTRVARLLDAALPGFPSHLR-TTECKSYAQRMKGKQGRFRGNLSGKRVDFSGRS 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
VISPDPNL+I ++ +P VA++LTYP+RV N + +++LV NGP HPG L
Sbjct: 366 VISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGAL 417
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 254 LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAI 313
L +AYLV +AR L + ++ S WL + ET +P PAI
Sbjct: 545 LTAAYLV-------TARDALFDRATFTQMVSH--WLDA-----------ETQFALPIPAI 584
Query: 314 MKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+KP LWTGKQ+F LIL+P + + NL+ K R Y+
Sbjct: 585 LKPAELWTGKQLFELILRPTPETQLLLNLEAKTRFYS 621
>gi|443919745|gb|ELU39821.1| DNA-directed RNA polymerase III largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 679
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 121 LLSEGYSKCEGYI-RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
++ E Y++C+ I +A+ +PGC E+TLEA+I LS +R G C++EL
Sbjct: 1 MVEEAYAECQELIEKALVFTSALRKPGCDQEQTLEAMISGVLSKVRGDVGDICMKELSRH 60
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N P++MA GSKGS IN+SQM++CVGQQ I+GKRVP+GF +RSLPHF K SK+P +KG V
Sbjct: 61 NAPIIMATCGSKGSTINVSQMVSCVGQQIISGKRVPDGFQDRSLPHFPKKSKEPPAKGFV 120
Query: 240 K 240
+
Sbjct: 121 R 121
>gi|261196045|ref|XP_002624426.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
gi|239587559|gb|EEQ70202.1| DNA-directed RNA polymerase III [Ajellomyces dermatitidis SLH14081]
Length = 1456
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ + Y++C+ I+ +G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGDKLLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGAICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHARQPPAKGFVR 849
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF++
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSA 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ +A +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L + +T +PPP+++KP+ LWTGKQIF+++++PN+ PV NL R +
Sbjct: 583 LYMLQSDTRFDLPPPSVIKPQMLWTGKQIFNVLMRPNKQSPVLVNLDAACRGF 635
>gi|407849768|gb|EKG04383.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi]
Length = 1553
Score = 127 bits (320), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P +M+ + + QRLKGK GRFRGNLSGKRVDF+ R+
Sbjct: 312 ETWEMLQMRAARLLDSALPGFPPHMR-TADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
VISPDPNL + ++ +P VA++LTYP+RV +N E +++LV NGP+ HPG + L
Sbjct: 371 VISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY--LAQ 428
Query: 124 EGYSKCEGYIRAMES 138
EG K + R ES
Sbjct: 429 EGSKKSLNHERDRES 443
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/129 (43%), Positives = 87/129 (67%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K +L+ ++ C+ I + ++GR++ PG + ++LEA + ELS +RD G A
Sbjct: 708 PLLNEQKAAVLARSFATCDSLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
++ L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ N F +RSLPHF +F
Sbjct: 768 AVETLSVDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFE 827
Query: 231 KDPASKGNV 239
+ P+++G V
Sbjct: 828 EAPSARGFV 836
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 283 RSRNGWL-SSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNAN 341
RS+ W+ S L +FR +P P I+KP LWTGKQ+F LIL+P+ + V N
Sbjct: 565 RSQMSWMVSHWLGPVTQFR-------LPIPTILKPTELWTGKQVFELILRPSPEVNVLLN 617
Query: 342 LKTKGRAYTFK 352
L+ + YT K
Sbjct: 618 LEAATKFYTKK 628
>gi|407410320|gb|EKF32797.1| DNA-directed RNA polymerase III largest subunit, putative
[Trypanosoma cruzi marinkellei]
Length = 1629
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 88/135 (65%), Gaps = 3/135 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P +M+ + + QRLKGK GRFRGNLSGKRVDF+ R+
Sbjct: 387 ETWEMLQMRAARLLDSALPGFPPHMR-TADVKSYAQRLKGKHGRFRGNLSGKRVDFSGRS 445
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
VISPDPNL + ++ +P VA++LTYP+RV +N E +++LV NGP+ HPG + L
Sbjct: 446 VISPDPNLDVDELAVPLRVARVLTYPQRVFKSNLELMRRLVRNGPNVHPGAVAVY--LAQ 503
Query: 124 EGYSKCEGYIRAMES 138
EG K + R ES
Sbjct: 504 EGSKKSLNHERDRES 518
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L K +L+ ++ C+G I + ++GR++ PG + ++LEA + ELS +RD G A
Sbjct: 783 PLLNEQKAAVLARSFATCDGLIESAKTGRMEPLPGLTVRQSLEARLNAELSKVRDECGTA 842
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
++ L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ N F +RSLPHF +F
Sbjct: 843 AVEALSVDTNTPLMMVQSGSKGSALNIAQMMACVGQQTVSGKRILNAFQDRSLPHFYRFE 902
Query: 231 KDPASKGNV 239
+ P+++G V
Sbjct: 903 EAPSARGFV 911
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 283 RSRNGWL-SSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNAN 341
RS+ W+ S L +FR +P P I+KP LWTGKQ+F LIL+P+ + V N
Sbjct: 640 RSQMSWMVSHWLGPVTQFR-------LPIPTILKPTELWTGKQVFELILRPSPEVNVLLN 692
Query: 342 LKTKGRAYTFK 352
L+ + YT K
Sbjct: 693 LEAATKFYTKK 703
>gi|336466341|gb|EGO54506.1| DNA-directed RNA polymerase III largest subunit [Neurospora
tetrasperma FGSC 2508]
gi|350286795|gb|EGZ68042.1| DNA-directed RNA polymerase III largest subunit [Neurospora
tetrasperma FGSC 2509]
Length = 1475
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 79 PEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAM 136
PEH A+ + ++ A L+ + D +P L K +L+ + Y+ C+ I
Sbjct: 627 PEHAAQAMNRLAKLC-ARTLTLRGFSIGVGDVYPSKDLTEHKAKLVQDAYALCDDLIAQF 685
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+SGRL+ PGC+ EETLE I LS +R AG C+ L +N PL+MA SGSKGS IN
Sbjct: 686 KSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLSRNNSPLIMAKSGSKGSDIN 745
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++QM+A VGQQ I GKRV +GF +R+L HF K ++ P SKG V+
Sbjct: 746 VAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSKGFVR 789
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
ET + +PPP I+KP LWTGKQIF+++++PN+ PV NL+ K + Y K
Sbjct: 529 ETHLDLPPPTIIKPVELWTGKQIFNVLMRPNKQSPVLVNLEAKNKVYKAK 578
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 76 VGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V +PE VAK LTYPERV+ N E L++ V+NGP PG
Sbjct: 331 VAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPG 368
>gi|164426670|ref|XP_956571.2| DNA-directed RNA polymerase III largest subunit [Neurospora crassa
OR74A]
gi|157071429|gb|EAA27335.2| DNA-directed RNA polymerase III largest subunit [Neurospora crassa
OR74A]
Length = 1474
Score = 127 bits (320), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 71/164 (43%), Positives = 99/164 (60%), Gaps = 3/164 (1%)
Query: 79 PEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAM 136
PEH A+ + ++ A L+ + D +P L K +L+ + Y+ C+ I
Sbjct: 626 PEHAAQAMNRLAKLC-ARTLTLRGFSIGVGDVYPSKDLTEHKAKLVQDAYALCDDLIAQF 684
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+SGRL+ PGC+ EETLE I LS +R AG C+ L +N PL+MA SGSKGS IN
Sbjct: 685 KSGRLEKAPGCNMEETLENKISGILSKVRSQAGDYCVGHLSRNNSPLIMAKSGSKGSDIN 744
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++QM+A VGQQ I GKRV +GF +R+L HF K ++ P SKG V+
Sbjct: 745 VAQMVALVGQQIIGGKRVADGFQDRTLFHFHKNARQPPSKGFVR 788
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
ET + +PPP I+KP LWTGKQIF+++++PN+ PV NL+ K + Y K
Sbjct: 528 ETHLDLPPPTIIKPVELWTGKQIFNVLMRPNKQSPVLVNLEAKNKVYKAK 577
Score = 51.6 bits (122), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 30/43 (69%)
Query: 71 LQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
LQ+ V +PE VAK LTYPERV+ N E L++ V+NGP PG
Sbjct: 325 LQVGMVAVPERVAKNLTYPERVNRNNIEKLRKCVMNGPKVWPG 367
>gi|401403150|ref|XP_003881423.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
caninum Liverpool]
gi|325115835|emb|CBZ51390.1| putative DNA-directed RNA polymerase III largest subunit [Neospora
caninum Liverpool]
Length = 1769
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/128 (49%), Positives = 87/128 (67%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P LL AK+ +L+ GY+ I+ + G LQ PGC+ E+TLE + L +R+ AGKA
Sbjct: 809 PTLLAAKKDILNHGYNLVAQEIQMYKKGALQPHPGCTLEQTLEVRVKSILDDLRNEAGKA 868
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C + LHP N PL+M SG+KG+ INI+QMIACVGQQ ++G+R+ NGF +R+LPHF +
Sbjct: 869 CNRVLHPLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFVSRTLPHFPLNCR 928
Query: 232 DPASKGNV 239
D S+G V
Sbjct: 929 DAKSRGFV 936
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
WE+LQL C IN++ + + K+ S RG+ QRLKGK+GRFRGNLSGKRVDF+ R
Sbjct: 408 WEFLQLQCTRLINADAPAVSQLLASKNISKPGRGICQRLKGKEGRFRGNLSGKRVDFSGR 467
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN +Y+V +PE VAK LT+PERV+ N E L+ VL G PG
Sbjct: 468 TVISPDPNANVYEVVVPEWVAKRLTFPERVNRVNIEVLRAAVLKGCSDWPG 518
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + + V +PPP ++KP LWTGKQ+ ++L+PN + V N + K R +
Sbjct: 671 FTDGLSQVDLPPPTVLKPVELWTGKQVIGVLLRPNGNSFVMVNFQLKEREFA 722
>gi|223478217|ref|YP_002582841.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
gi|214033443|gb|EEB74270.1| DNA-directed RNA polymerase subunit A' [Thermococcus sp. AM4]
Length = 905
Score = 127 bits (320), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSG+P + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP + I +VG+P +A LT PE+V N E L+Q VLNGP+K+PG
Sbjct: 327 SARTVISPDPMISINEVGVPLAIAMELTVPEKVTEFNFEKLRQRVLNGPEKYPG 380
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R KE ++ E + + I A + G L+ PG + EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIKE-IIREAEERVQRLIEAYKRGELEPLPGKTLEETLESKIMAVLAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 ERYLGMNNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|408402779|ref|YP_006860762.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|300521498|gb|ADK25960.1| RNA polymerase A [Candidatus Nitrososphaera gargensis]
gi|408363375|gb|AFU57105.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrososphaera
gargensis Ga9.2]
Length = 1273
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 82/117 (70%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 263 IVQDLVDLLQYHVTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 319
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+SRTVISPDPNL I VG+P VAK LT PE V N E LK+LV+NGP+ +PG
Sbjct: 320 VDFSSRTVISPDPNLTIADVGVPTDVAKKLTIPETVSQWNVERLKELVMNGPNTYPG 376
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/120 (39%), Positives = 69/120 (57%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ + Y K I+ G L G +AEE LE ++ ELS RD AG+ + N
Sbjct: 660 IIQKTYEKVYELIQQYNDGTLPLTRGLAAEEALELYVVNELSRARDRAGRTADRAFPDEN 719
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA +G++GS +NI QM A +GQQ+I GKR+ G+ NR+L HF +P +KG VK
Sbjct: 720 SGVIMASTGARGSTLNIGQMTAALGQQSIRGKRIQKGYHNRALSHFKPNDANPDAKGFVK 779
>gi|327351527|gb|EGE80384.1| hypothetical protein BDDG_03325 [Ajellomyces dermatitidis ATCC
18188]
Length = 855
Score = 127 bits (319), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 63/139 (45%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ + Y++C+ I+ +G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGDKLLEEKSHIVEDAYAQCDEVIQLFRTGKLEKAPGCDEQMTMENTISGILSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 776 QAGAICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGGQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK--FLR 243
K ++ P +KG V+ F R
Sbjct: 836 PKHARQPPAKGFVRNSFFR 854
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF++
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSA 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ +A +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVDEVAVPQLIAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L + +T +PPP+++KP+ LWTGKQIF+++++PN+ PV NL R +
Sbjct: 583 LYMLQSDTRFDLPPPSVIKPQMLWTGKQIFNVLMRPNKQSPVLVNLDAACRGF 635
>gi|18977935|ref|NP_579292.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus DSM
3638]
gi|18893705|gb|AAL81687.1| DNA-directed RNA polymerase subunit a' [Pyrococcus furiosus DSM
3638]
Length = 907
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/117 (54%), Positives = 84/117 (71%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+E G+P K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 264 IIEDLWDLLQYHVTTYINNEAPGVP---PAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E L+++VLNGPDK+PG
Sbjct: 321 VNFSARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPG 377
Score = 84.3 bits (207), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + I A + G L+ PG S E+TLE++I+ L+ RD+AG + L N
Sbjct: 684 IIREAEERVNKLIEAYKRGELEPLPGKSLEDTLESLIMAVLAEARDNAGAVAEKYLGMDN 743
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
++MA +G++G +NI+QM A +GQQ+I GKR+ GF R L HF +KG V
Sbjct: 744 HTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFV 802
>gi|258564805|ref|XP_002583147.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
gi|237906848|gb|EEP81249.1| DNA-directed RNA polymerase III largest subunit [Uncinocarpus
reesii 1704]
Length = 1435
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/134 (46%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL+AK ++ E Y++C+ I+ ++G+L+ G ++T+E I L+ +R
Sbjct: 716 DVYPGDALLQAKREIVEEAYAQCDEVIQLFKTGKLEKAAGSDEQQTMENQISGILNKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QMIA VGQQ I G+RV NGF +R+LPHF
Sbjct: 776 QAGEKCIAELSKWNSPLIMAQSGSKGSTINVAQMIALVGQQIIGGQRVQNGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHTRQPLAKGFVR 849
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG+ QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQIAVYINSDVPGLQ-KADFGKPIRGICQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P+ VA +TYPERV NKE L++ + NG PG
Sbjct: 380 RTVISPDPNLRIDEVAVPQLVAMNMTYPERVTRYNKEKLRERIRNGTKVWPG 431
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
T +PPPA++KP+ LWTGKQ+F+++++P++D PV NL R ++
Sbjct: 590 TKFDLPPPAVLKPQMLWTGKQVFNVMMRPSKDSPVLLNLDAACREFS 636
>gi|397652056|ref|YP_006492637.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
gi|393189647|gb|AFN04345.1| DNA-directed RNA polymerase subunit A' [Pyrococcus furiosus COM1]
Length = 910
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+E G+P + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP + I +VG+P VA LT PE+V N E L+++VLNGPDK+PG
Sbjct: 327 SARTVISPDPMISINEVGVPVEVAMELTVPEKVTEFNIERLRKMVLNGPDKYPG 380
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 68/119 (57%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E + I A + G L+ PG S E+TLE++I+ L+ RD+AG + L N
Sbjct: 687 IIREAEERVNKLIEAYKRGELEPLPGKSLEDTLESLIMAVLAEARDNAGAVAEKYLGMDN 746
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
++MA +G++G +NI+QM A +GQQ+I GKR+ GF R L HF +KG V
Sbjct: 747 HTVIMAKTGARGKILNITQMAALLGQQSIRGKRLYRGFRGRVLSHFKPGDLGARAKGFV 805
>gi|242807568|ref|XP_002484983.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
gi|218715608|gb|EED15030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces stipitatus ATCC 10500]
Length = 1441
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W+++ L A++IN + G L + +R L+ RLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 LMECWDYMTLQIAIYINGDVPG--LKGEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSG 377
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +PE VAK +TYPE V N E+L++LV NG +K PG
Sbjct: 378 RTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLRKLVRNGINKWPG 429
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/134 (43%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L++ K L+ Y+ C+ I ++G+L+ GC +T+E+ + LS +R
Sbjct: 717 DVYPSEKLVQTKNELVERAYAACDEVIAKYKAGKLEKLAGCDELQTMESQVSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I+ +RV +GF +R+LPHF
Sbjct: 777 QAGEECIAQLSKYNAPLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARHPPSKGFVR 850
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPAI+KP+ LWTGKQ+F+++++PN+D PV N+ R +
Sbjct: 589 ETRFDLPPPAILKPQMLWTGKQVFNILMRPNKDDPVKVNIDAACREF 635
>gi|20094123|ref|NP_613970.1| DNA-directed RNA polymerase subunit A' [Methanopyrus kandleri AV19]
gi|19887124|gb|AAM01900.1| DNA-directed RNA polymerase largest subunit, the C-terminal part
[Methanopyrus kandleri AV19]
Length = 953
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 84/115 (73%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I++ W+ LQ H +I++E G+P+ +G++QRLKGK+GRFR NL+GKRV+
Sbjct: 263 IIEDQWDLLQYHVTTYIDNEIGGVPVARHRTGGKPLKGIVQRLKGKEGRFRQNLAGKRVN 322
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++R+VI+PDP L + +G+PE +AK LT PERV N + L++LVLNGP+KHPG
Sbjct: 323 FSARSVITPDPELDPFTLGVPEAIAKELTVPERVTEWNIDRLRKLVLNGPNKHPG 377
>gi|66475716|ref|XP_627674.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
gi|46229106|gb|EAK89955.1| DNA-directed RNA polymerase III C1 subunit [Cryptosporidium parvum
Iowa II]
Length = 1871
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKS---KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+WE+LQL C IN++ G+ + K+ RG+ QRLKGK+GRFRGNLSGKRVDF+
Sbjct: 302 NWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSG 361
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+++ +V +P +AK LTYPERV+ N + L++ VLNG D PG
Sbjct: 362 RTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 413
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL AK+ LL +GY + + I + E G+L PG S E+TLE + K L IR+ AGKA
Sbjct: 705 LLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKILDDIRNEAGKASH 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L PSN PL+M LSG+KG INI+QM+ACVGQQ + G+R+ NGF NR+LPHF D
Sbjct: 765 ISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDG 824
Query: 234 ASKGNV 239
S+G V
Sbjct: 825 RSRGFV 830
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCP--VNANLKTKGRAYTFK 352
+PPP I+KP LWTGKQ+F++IL+PN + ++ + + K R Y K
Sbjct: 575 LPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVSFELKERDYDSK 621
>gi|409095098|ref|ZP_11215122.1| DNA-directed RNA polymerase subunit A' [Thermococcus zilligii AN1]
Length = 907
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H +IN+ETSG+P + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP + I +VG+P +A LT PE+V N E LK+ VLNGP+K+PG
Sbjct: 327 SARTVISPDPMISINEVGVPIAIAMELTVPEKVTEFNFEKLKERVLNGPEKYPG 380
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/114 (42%), Positives = 68/114 (59%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R KE + E K + I A + G L+ PG S EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIKE-IAREAEEKVQKLIEAYKRGELEPLPGKSLEETLESRIMAVLAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 ERYLGMGNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRGRVLTHF 791
>gi|67612875|ref|XP_667260.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium hominis
TU502]
gi|54658380|gb|EAL37032.1| DNA-directed RNA polymerase II/III subunit [Cryptosporidium
hominis]
Length = 1869
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKS---KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+WE+LQL C IN++ G+ + K+ RG+ QRLKGK+GRFRGNLSGKRVDF+
Sbjct: 302 NWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSG 361
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+++ +V +P +AK LTYPERV+ N + L++ VLNG D PG
Sbjct: 362 RTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 413
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL AK+ LL +GY + + I + E G+L PG S E+TLE + K L IR+ AGKA
Sbjct: 705 LLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKILDDIRNEAGKASH 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L PSN PL+M LSG+KG INI+QM+ACVGQQ + G+R+ NGF NR+LPHF D
Sbjct: 765 ISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDG 824
Query: 234 ASKGNV 239
S+G V
Sbjct: 825 RSRGFV 830
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKP--NRDCPVNANLKTKGRAYTFK 352
+PPP I+KP LWTGKQ+F++IL+P N + ++ + + K R Y K
Sbjct: 575 LPPPTILKPVELWTGKQVFNMILRPNSNENERIDVSFELKERDYDSK 621
>gi|154270754|ref|XP_001536231.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
gi|150409805|gb|EDN05245.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus NAm1]
Length = 1439
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 89/134 (66%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ Y++C+ I+ ++G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I +RV +GF +R+LPHF
Sbjct: 776 QAGEICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K+++ P +KG V+
Sbjct: 836 PKYARQPPAKGFVR 849
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ VA +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L E +T +PPP+++KP+ LWTGKQ+F+++++PN+ PV NL R +
Sbjct: 583 LYMLESDTRFDLPPPSVLKPQILWTGKQVFNVLMRPNKQSPVLINLDAACREF 635
>gi|396496347|ref|XP_003844722.1| similar to DNA-directed RNA polymerase iii largest subunit
[Leptosphaeria maculans JN3]
gi|312221303|emb|CBY01243.1| similar to DNA-directed RNA polymerase iii largest subunit
[Leptosphaeria maculans JN3]
Length = 1520
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 89/134 (66%), Gaps = 6/134 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 370 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 427
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVI PDPNL I +V +PE +AK LTYPE+ N + L++LV NG +++PG A
Sbjct: 428 SGRTVIGPDPNLSIDEVAVPERIAKNLTYPEKATRYNIDKLRRLVKNGANEYPG---ANY 484
Query: 120 RLLSEGYSKCEGYI 133
L EG +K G I
Sbjct: 485 ILTDEGPNKDRGKI 498
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L++ K+ L+ E Y+KC+ I + G+LQ GC E+T+E I LS +R
Sbjct: 788 DVTPGEKLVQKKQALVEEAYAKCDKLIMDFKEGKLQRDAGCDEEQTMENRIGGILSGVRQ 847
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 848 AAGDICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFHHRTLPHF 907
Query: 227 DKFSKDPASKGNV 239
K ++ PASKG V
Sbjct: 908 PKAARQPASKGFV 920
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 31/42 (73%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IPPP + KP+ALWTGKQ+F+L+++PN+ V NL+ + +
Sbjct: 666 IPPPVVWKPQALWTGKQVFNLLMRPNKASRVLVNLEAACKQF 707
>gi|352682852|ref|YP_004893376.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
gi|350275651|emb|CCC82298.1| DNA-directed RNA polymerase subunit A' [Thermoproteus tenax Kra 1]
Length = 883
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I W+ LQ H A + ++E GIPL + +G+ QRLKGK+GRFRG+LSGKRV+F
Sbjct: 270 VIDNLWDLLQYHIATYFDNELPGIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNF 329
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+P +AK+LT PERV N E LKQ V+ GP+ PG
Sbjct: 330 SARTVISPDPNLSINEVGVPIDIAKVLTVPERVTQWNLEDLKQAVMRGPEAWPG 383
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 73/136 (53%), Gaps = 3/136 (2%)
Query: 105 LNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVI 164
LN PD+ L ++++ G +K I GRL+ PG + +ETLE + + LS +
Sbjct: 658 LNLPDEA---LHEVDKIIENGINKAMELIEIYREGRLEAAPGYTVQETLENRLAEILSRV 714
Query: 165 RDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLP 224
R A + + + +MA +G++GS NI QM+A +GQQ I G+R+ G+ R+LP
Sbjct: 715 RSDAEAVVDRYIDKRSEAYLMAKTGARGSLTNIVQMVATLGQQTIRGERIKRGYRTRTLP 774
Query: 225 HFDKFSKDPASKGNVK 240
HF P S G V+
Sbjct: 775 HFPVGDIGPFSGGFVR 790
>gi|389585038|dbj|GAB67769.1| DNA-directed RNA polymerase III largest subunit [Plasmodium
cynomolgi strain B]
Length = 1969
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/127 (48%), Positives = 82/127 (64%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ K+ LL GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 796 LIQKKKDLLQAGYEKVNKEILLYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCN 855
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF+ KD
Sbjct: 856 QYLDHLNKPLIMFNSGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFNIHCKDS 915
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 916 ESRGFVQ 922
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 64/110 (58%), Positives = 79/110 (71%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 368 EFLQLQTTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 427
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IPE +A LTYPE+V+ N E LK+L+ NG + PG
Sbjct: 428 VISPDPNISIDEVVIPEIIAMRLTYPEKVNRYNIEKLKKLIKNGTNTWPG 477
Score = 55.1 bits (131), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
F + + + +P PAI+KPK LWTGKQ+ S+++KPNR N + K R Y+ K
Sbjct: 659 FSDAKVDIELPVPAILKPKELWTGKQLISVLIKPNRKENTIINFELKEREYSTK 712
>gi|32398906|emb|CAD98371.1| DNA-directed RNA polymerase II/III subunit, probable
[Cryptosporidium parvum]
Length = 1907
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKS---KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+WE+LQL C IN++ G+ + K+ RG+ QRLKGK+GRFRGNLSGKRVDF+
Sbjct: 338 NWEFLQLQCTRLINADAPGVNQLLASKNIPKAGRGVCQRLKGKEGRFRGNLSGKRVDFSG 397
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+++ +V +P +AK LTYPERV+ N + L++ VLNG D PG
Sbjct: 398 RTVISPDPNIEVDEVVVPMIIAKKLTYPERVNAINIDSLREAVLNGHDIWPG 449
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 65/126 (51%), Positives = 83/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL AK+ LL +GY + + I + E G+L PG S E+TLE + K L IR+ AGKA
Sbjct: 741 LLVAKKNLLEDGYQRVQDEINSYEKGKLTPHPGLSLEDTLELKVKKILDDIRNEAGKASH 800
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L PSN PL+M LSG+KG INI+QM+ACVGQQ + G+R+ NGF NR+LPHF D
Sbjct: 801 ISLPPSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTNRTLPHFKMNCVDG 860
Query: 234 ASKGNV 239
S+G V
Sbjct: 861 RSRGFV 866
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCP--VNANLKTKGRAYTFK 352
+PPP I+KP LWTGKQ+F++IL+PN + ++ + + K R Y K
Sbjct: 611 LPPPTILKPVELWTGKQVFNMILRPNSNEKERIDVSFELKERDYDSK 657
>gi|189192955|ref|XP_001932816.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187978380|gb|EDU45006.1| DNA-directed RNA polymerase III subunit RPC1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1471
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/114 (56%), Positives = 81/114 (71%), Gaps = 3/114 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 320 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 377
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ RTVI PDPNL I +V +P+ +AK LTYPE+V N E L++LV NG K+PG
Sbjct: 378 SGRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKVTRYNIEKLRRLVRNGAQKYPG 431
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ L+ E Y++C+ I +G+LQ GC AE+T+E I LS +R
Sbjct: 736 DVTPGDKLNMKKQLLVQEAYAQCDKLISDFSNGKLQPDAGCDAEQTMENRIGGILSGVRQ 795
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 796 AAGEICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFQHRTLPHF 855
Query: 227 DKFSKDPASKGNV 239
K ++ PASKG V
Sbjct: 856 PKAARQPASKGFV 868
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ IPPP I KP+ALWTGKQ+F+L+++PN+ C V NL+ + +
Sbjct: 612 IDIPPPVIWKPQALWTGKQVFNLLMRPNKGCRVLINLEAACKQF 655
>gi|290984021|ref|XP_002674726.1| RNA polymerase II largest subunit [Naegleria gruberi]
gi|284088318|gb|EFC41982.1| RNA polymerase II largest subunit [Naegleria gruberi]
Length = 1650
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/147 (43%), Positives = 96/147 (65%), Gaps = 4/147 (2%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ HCA ++N+E SG+P++ + + L QRLKGK+GR RGNL GKRVDF++RTVI+P
Sbjct: 275 LQYHCATYMNNEISGVPMSTTKNGRMLKSLRQRLKGKEGRVRGNLMGKRVDFSARTVITP 334
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYS 127
DP ++I QVG+P +A+ +T PE+V N E + +LV+NGP+ +PG AK L +G
Sbjct: 335 DPTIEIDQVGVPRTIARNMTVPEKVTPFNFERMNELVMNGPETYPG---AKYVLRDDGTR 391
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLE 154
++ + ++Q Q G + E L+
Sbjct: 392 IDLKFLSDRSTDQVQLQYGYTIERHLQ 418
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E +++ + + ++ +G + +PG + E++ E I L+ R+ AG + L
Sbjct: 671 EEIINNAEREVKKIVKQAHNGLVTAEPGRTVEQSFERSINSTLNAAREDAGMHVKKSLKD 730
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
SN M SGSKGS++NISQ+IACVGQQ + GKRVP GF NR+LPHF P S+G
Sbjct: 731 SNSIKSMVTSGSKGSYLNISQIIACVGQQNVEGKRVPFGFKNRTLPHFSTDDHGPESRGF 790
Query: 239 V--KFLR 243
V +LR
Sbjct: 791 VANSYLR 797
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQ+FSL+L
Sbjct: 541 LPVPAILKPKPLWTGKQLFSLLL 563
>gi|156096092|ref|XP_001614080.1| DNA-directed RNA polymerase III largest subunit [Plasmodium vivax
Sal-1]
gi|148802954|gb|EDL44353.1| DNA-directed RNA polymerase III largest subunit, putative
[Plasmodium vivax]
Length = 1946
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/127 (49%), Positives = 82/127 (64%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K+ LL GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 771 LLQKKKDLLQAGYEKVNREIALYNEKKMQIQPGCTLEETLEIKVKNILDDLRNDAGKTCN 830
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF+ KD
Sbjct: 831 QYLDHLNKPLIMFNSGAKGALINIAQMIACVGQQNVTGQRIQNGFINRTLPHFNFHCKDS 890
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 891 ESRGFVQ 897
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 78/112 (69%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+S
Sbjct: 326 NVEFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSS 385
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ I +V +PE +A LTYPE+V+ N LK+L+ NG PG
Sbjct: 386 RTVISPDPNISIDEVVVPESIAMRLTYPEKVNRYNMAKLKRLIRNGTSTWPG 437
Score = 53.1 bits (126), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
F + + ++ +P PAI+KPK LWTGKQ+ S+++KPN N + K R Y+ K
Sbjct: 634 FSDAKVNIDLPVPAILKPKELWTGKQLISVLIKPNTKENTIINFEIKEREYSTK 687
>gi|212538083|ref|XP_002149197.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
gi|210068939|gb|EEA23030.1| DNA-directed RNA polymerase III largest subunit, putative
[Talaromyces marneffei ATCC 18224]
Length = 1439
Score = 127 bits (318), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 62/112 (55%), Positives = 81/112 (72%), Gaps = 2/112 (1%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W+++ L A++IN + G L + +R L+ RLKGKQGRFRGNLSGKRVDF+
Sbjct: 319 LMECWDYMTLQIAIYINGDVPG--LKGEAGKPTRSLVSRLKGKQGRFRGNLSGKRVDFSG 376
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +PE VAK +TYPE V N E+L++LV NG +K PG
Sbjct: 377 RTVISPDPNLRIDEVAVPELVAKNMTYPEIVTRYNLEYLQKLVRNGINKWPG 428
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 86/127 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++ K L+ Y+ C+ I ++G+L+ PGC +T+E+ + LS +R AG+ C+
Sbjct: 723 LVQTKNELVERAYAACDEVIAQYKAGKLEKLPGCDELQTMESQVSGILSKVRQQAGEECI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
++L N PL+MA SGSKGS IN+SQM+A VGQQ I+ +RV +GF +R+LPHF K ++ P
Sbjct: 783 KQLSKYNAPLIMATSGSKGSSINVSQMVAVVGQQIISSERVQDGFQDRTLPHFPKNARHP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 PSKGFVR 849
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
ET +PPPAI+KP+ +WTGKQ+F+++++PN+D PV N+ R +
Sbjct: 588 ETRFDLPPPAILKPQMMWTGKQVFNILMRPNKDDPVKVNIDAACREF 634
>gi|330914134|ref|XP_003296505.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
gi|311331266|gb|EFQ95369.1| hypothetical protein PTT_06631 [Pyrenophora teres f. teres 0-1]
Length = 1472
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 91/143 (63%), Gaps = 6/143 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W++LQL A++INS+ G L Q K+ RG QRLKGK GRFR NLSGKRVDF
Sbjct: 320 ILMEQWDFLQLQIAMYINSDAPG--LKQQGLQKTMRGFSQRLKGKGGRFRQNLSGKRVDF 377
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+ RTVI PDPNL I +V +P+ +AK LTYPE+ N E L++LV NG K+PG A
Sbjct: 378 SGRTVIGPDPNLSIDEVAVPQRIAKNLTYPEKATRYNIEKLRRLVRNGAQKYPG---ANY 434
Query: 120 RLLSEGYSKCEGYIRAMESGRLQ 142
L +G +K G I + R+
Sbjct: 435 ILTDQGPNKDPGKISLIALSRVD 457
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/133 (49%), Positives = 86/133 (64%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L K+ L+ E Y++C+ I +G+LQ GC AE+T+E I LS +R
Sbjct: 737 DVTPGDKLNTKKQLLVQEAYAQCDKLISDFSNGKLQPDAGCDAEQTMENKIGGILSGVRQ 796
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C +EL N PL+MA GSKGS IN+SQM+A VGQQ I G RV +GF +R+LPHF
Sbjct: 797 AAGEICFEELSRWNSPLLMAKCGSKGSNINVSQMVASVGQQMIGGARVADGFQHRTLPHF 856
Query: 227 DKFSKDPASKGNV 239
K ++ PASKG V
Sbjct: 857 PKAARQPASKGFV 869
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 34/44 (77%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+ IPPP + KP+ALWTGKQ+F+L+++PN++C V NL+ + Y
Sbjct: 613 IDIPPPVVWKPQALWTGKQVFNLLMRPNKECRVLINLEAACKQY 656
>gi|347522775|ref|YP_004780345.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
gi|343459657|gb|AEM38093.1| DNA-directed RNA polymerase subunit A' [Pyrolobus fumarii 1A]
Length = 882
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/116 (56%), Positives = 81/116 (69%), Gaps = 3/116 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSR---GLIQRLKGKQGRFRGNLSGKRV 57
+I E W LQ H A +I++E IP+ Q R GL QRLKGK+GRFRGNLSGKRV
Sbjct: 262 VIDEWWNLLQYHVATYIDNELPKIPVARQRGGLGRPLKGLAQRLKGKEGRFRGNLSGKRV 321
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+F++RTVISPDPN+ I +VG+P +AKILT RV N E L++ V+NGPDK PG
Sbjct: 322 NFSARTVISPDPNISINEVGVPIEIAKILTVAVRVTPWNIEELRKYVINGPDKWPG 377
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L E K + I GRL+ PG + EETLE I++ L+ R + L P N
Sbjct: 666 ILKEAEKKVQELIEQYREGRLEPVPGRTLEETLELKIIEALTDARRKIEQYVADVLDPFN 725
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+MA +G++G+ +NI+QM A +GQQ + G+R+ G+ R LPHF PA++G V
Sbjct: 726 NVFIMARTGARGNELNITQMAAILGQQTVRGERISRGYRGRYLPHFKPGDLGPAARGFV 784
>gi|453086139|gb|EMF14181.1| DNA-directed RNA polymerase III subunit RPC1 [Mycosphaerella
populorum SO2202]
Length = 1484
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 74/112 (66%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ + WE+LQ+ A++I+ G+ + RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 322 VMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNLSGKRVDFSG 381
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P VA I+TYPERV N E LK V G HPG
Sbjct: 382 RTVISPDPNLAIDEVAVPSRVAVIMTYPERVTKHNYEKLKACVKRGDKVHPG 433
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 78/126 (61%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + K L+ Y KC+ I ++G+L+ GC E+T+E ++ LS +R G AC
Sbjct: 741 LTKRKLNLVETAYRKCDEIIHKFKTGKLERSAGCDEEQTMEIMLSGILSKVRQECGDACF 800
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N P+ MA GSKGS IN+SQM+A VGQQ I GKRV GF +R+LPHF K S DP
Sbjct: 801 AELSKYNAPMTMAKCGSKGSNINVSQMVAVVGQQIIGGKRVLEGFQDRTLPHFLKASPDP 860
Query: 234 ASKGNV 239
+KG V
Sbjct: 861 LAKGFV 866
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 45/63 (71%)
Query: 287 GWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKG 346
G++ + + + + E ++IPPPAI KP+ALWTGKQI++L++KP+ D PVN NL+ +
Sbjct: 589 GFMYNAMQAKDPYTGKEYPIVIPPPAIWKPQALWTGKQIWNLLIKPHPDYPVNVNLEARL 648
Query: 347 RAY 349
+ Y
Sbjct: 649 KQY 651
>gi|209881813|ref|XP_002142344.1| DNA-directed RNA polymerase III largest subunit [Cryptosporidium
muris RN66]
gi|209557950|gb|EEA07995.1| DNA-directed RNA polymerase III largest subunit, putative
[Cryptosporidium muris RN66]
Length = 1803
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 82/127 (64%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL AK +LL +GY K + I E G++ PGC+ E+TLE + K L IR+ AGKA
Sbjct: 704 GLLSAKSKLLEDGYRKIQEEITTFELGKMIPHPGCTLEDTLEVKVKKILDEIRNDAGKAS 763
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L SN PL+M LSG+KG INI+QM+ACVGQQ + G+R+ NGF R+LPHF D
Sbjct: 764 YSSLPFSNKPLLMYLSGAKGQLINIAQMVACVGQQNVAGQRIQNGFTQRTLPHFKINCVD 823
Query: 233 PASKGNV 239
S+G V
Sbjct: 824 GRSRGFV 830
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 80/112 (71%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKS---KSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+WE+LQL C IN+E G+ + K+ RG+ QRLKGK+GRFRGNLSGKRVDF+
Sbjct: 303 NWEFLQLQCTRLINAEAPGVNQLLASKNIPKAGRGICQRLKGKEGRFRGNLSGKRVDFSG 362
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ + +V +P +A+I+TYPERV+ N E L+ VLNG + PG
Sbjct: 363 RTVISPDPNVAVDEVVVPVVIARIMTYPERVNSHNIERLRDAVLNGHNIWPG 414
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPN--RDCPVNANLKTKGRAYTFKFSI 355
V +PPP+I+KP LWTGKQ+F+++++PN + N + K R Y K +
Sbjct: 574 VELPPPSILKPIELWTGKQVFNVLIRPNPSERQHIIVNFELKERDYDTKLDL 625
>gi|83320442|gb|ABC02848.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 983
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 209 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 268
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 269 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 328
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 329 DSGERIDLKYSKRGGDI 345
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+++SE + + I+ +++ PG + +ET E I EL+ R++AGK+ +L
Sbjct: 607 KIISEAHRIVDQIIKDCIEDKMKGLPGMTYKETFENNINFELNKARENAGKSVQAQLKDC 666
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +SGSKGS+IN+SQM A VGQQ + GKR+P GF +R+LPHF K P S+G V
Sbjct: 667 NNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFV 726
Query: 240 K 240
+
Sbjct: 727 E 727
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+IPPP I+KP+ LW+GKQ++SL++ +C
Sbjct: 480 MIPPPCILKPQPLWSGKQLYSLLIPDGINC 509
>gi|401428277|ref|XP_003878621.1| DNA-directed RNA polymerase III largest subunit ,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
gi|322494870|emb|CBZ30173.1| DNA-directed RNA polymerase III largest subunit ,putative
[Leishmania mexicana MHOM/GT/2001/U1103]
Length = 1589
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 87/123 (70%), Gaps = 1/123 (0%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K +L+ + KC+ I ++GRL +PG S +++LEA++ ELS +RD G A +Q L
Sbjct: 709 KAAVLAVSFDKCDHLISLAKTGRLIPKPGLSVKQSLEAMLNAELSQVRDACGSAAVQALD 768
Query: 178 P-SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASK 236
SN PL+M SGSKGS +N +QM+ACVGQQ ++GKR+ N F +R+LPHF +F++DPAS+
Sbjct: 769 AKSNAPLIMVNSGSKGSALNTAQMMACVGQQTVSGKRIMNAFQDRALPHFPRFAEDPASR 828
Query: 237 GNV 239
G V
Sbjct: 829 GFV 831
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 1/112 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ A +++ G P +++ + + QR+KGKQGRFRGNLSGKRVDF+ R+
Sbjct: 307 ETWELLQTRVARLLDAALPGFPSHLR-TVECKSYAQRMKGKQGRFRGNLSGKRVDFSGRS 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL 115
VISPDPNL+I ++ +P VA++LTYP+RV N + +++LV NGP HPG L
Sbjct: 366 VISPDPNLRIDELAVPLRVARVLTYPQRVFAGNIQLMRRLVRNGPHVHPGAL 417
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 20/97 (20%)
Query: 254 LKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAI 313
L +AYLV +AR L + ++ S WL S ET +P PAI
Sbjct: 545 LTAAYLV-------TARDALFDRASFTQMVSH--WLGS-----------ETQYALPIPAI 584
Query: 314 MKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
+KP LW+GKQ+F LIL+P + + NL+ K R Y+
Sbjct: 585 LKPAELWSGKQLFELILRPTSETQLLLNLEAKARFYS 621
>gi|120561211|gb|ABM26991.1| RNA polymerase II largest subunit, partial [Zancudomyces culisetae]
Length = 1025
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 288 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLKYSKRGGDI 364
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 75/121 (61%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+++SE + + I+ +++ PG + +ET E I EL+ R++AGK+ +L
Sbjct: 626 KIISEAHRIVDQIIKDCIEDKMKGLPGMTYKETFENNINFELNKARENAGKSVQAQLKDC 685
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +SGSKGS+IN+SQM A VGQQ + GKR+P GF +R+LPHF K P S+G V
Sbjct: 686 NNVRKMVVSGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRDRTLPHFTKDDYTPHSRGFV 745
Query: 240 K 240
+
Sbjct: 746 E 746
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 24/30 (80%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+IPPP I+KP+ LW+GKQ++SL++ +C
Sbjct: 499 MIPPPCILKPQPLWSGKQLYSLLIPDGINC 528
>gi|362412171|gb|AEW12847.1| RPB1 [Zancudomyces culisetae]
Length = 417
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 288 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLKYSKRGGDI 364
>gi|327311709|ref|YP_004338606.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
gi|326948188|gb|AEA13294.1| DNA-directed RNA polymerase subunit alpha [Thermoproteus uzoniensis
768-20]
Length = 884
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I W+ LQ H A + ++E GIPL + +G+ QRLKGK+GRFRG+LSGKRV+F
Sbjct: 271 VIDNLWDLLQYHTATYFDNELPGIPLAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNF 330
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+P +AKILT PERV N + L+Q V+ GP+ PG
Sbjct: 331 SARTVISPDPNLSINEVGVPIDIAKILTVPERVTEWNIDDLRQAVMRGPETWPG 384
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 68/125 (54%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ G +K I G+L+ PG + +ETLE + + LS +R A +
Sbjct: 666 VREVGKIIDSGINKALELIELYREGKLEAMPGYTVQETLENRLAEVLSKVRSDAEGVVER 725
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
+ ++ +MA +G++GS NI QM+A +GQQ I G+R+ G+ R+LPHF P
Sbjct: 726 YIDKNSEAYLMAKTGARGSLTNIVQMVATLGQQTIRGERIKRGYRTRTLPHFPVGDIGPF 785
Query: 235 SKGNV 239
S G V
Sbjct: 786 SGGFV 790
>gi|407464207|ref|YP_006775089.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
gi|407047395|gb|AFS82147.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus sp. AR2]
Length = 1263
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHSTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE VA LT PE V N E +++LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGV 378
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 62/119 (52%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E Y G L+ G AEE LEA I+ EL R+ AG L SN
Sbjct: 662 IQETYDVVADLTDQYNKGTLKLTRGMKAEEALEAYIVNELGKAREKAGATANDSLDDSNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +N+ QM +GQQ+ G R+ +G+ NR+L H+ + +P + G VK
Sbjct: 722 GKIMATTGARGSALNVGQMAGALGQQSRRGNRMNDGYSNRALTHYQEHDSNPDAHGFVK 780
>gi|362412174|gb|AEW12848.1| RPB1 [Zancudomyces culisetae]
Length = 421
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 288 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLKYSKRGGDI 364
>gi|362412165|gb|AEW12846.1| RPB1 [Zancudomyces culisetae]
Length = 421
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 288 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLKYSKRGGDI 364
>gi|167042230|gb|ABZ06962.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_ANIW93I24]
Length = 1264
Score = 125 bits (315), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ HC + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHCTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+P +A LT PE V N E LK+LV+NGP+ PG+
Sbjct: 321 VDFSSRTVISPDPNLDLGEVGVPTSIASKLTIPEIVTEWNIEKLKKLVINGPNTFPGV 378
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 62/119 (52%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
L E Y K I G L+ G + ET EA I EL+ RD AG L N
Sbjct: 662 LKETYDKVADIIVQKNKGTLKGLRGMTIAETAEAKITYELARARDRAGITANSNLADDNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +N+ QM +GQQ+ GKR+ G+ NR+L HF + +P S G VK
Sbjct: 722 GKIMATTGARGSALNVGQMAGALGQQSRRGKRLHTGYSNRTLSHFKEHDDNPDSHGFVK 780
>gi|124513306|ref|XP_001350009.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium
falciparum 3D7]
gi|23615426|emb|CAD52417.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium
falciparum 3D7]
Length = 2356
Score = 125 bits (315), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/127 (49%), Positives = 81/127 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K+ LL +GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 820 LTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCN 879
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q LH N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF KD
Sbjct: 880 QYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDS 939
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 940 ESRGFVQ 946
Score = 117 bits (293), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N + LK L+ NG +K PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG 415
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
F + + +P PAI+KPK LWTGKQ+ S+++KPN+ N + + R Y+ KF
Sbjct: 683 FSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKF 737
>gi|133354|sp|P27625.1|RPC1_PLAFA RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|160596|gb|AAA29729.1| RNA polymerase III largest subunit [Plasmodium falciparum]
Length = 2339
Score = 125 bits (314), Expect = 3e-26, Method: Composition-based stats.
Identities = 63/127 (49%), Positives = 81/127 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K+ LL +GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 820 LTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCN 879
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q LH N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF KD
Sbjct: 880 QYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDS 939
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 940 ESRGFVQ 946
Score = 117 bits (293), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N + LK L+ NG +K PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG 415
Score = 53.9 bits (128), Expect = 2e-04, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
F + + +P PAI+KPK LWTGKQ+ S+++KPN+ N + + R Y+ KF
Sbjct: 683 FSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKF 737
>gi|362412163|gb|AEW12845.1| RPB1 [Zancudomyces culisetae]
Length = 417
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 69/137 (50%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A FIN++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIDEFETLLQFHVATFINNDISGIPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL+I QVG+P+ +AK LTYPE V N + L++LV NGP +HPG ++R
Sbjct: 288 SARTVISGDPNLEIDQVGVPKAIAKNLTYPEVVTPYNIDRLQELVQNGPTEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLKYSKRGGDI 364
>gi|386875147|ref|ZP_10117336.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
gi|386807026|gb|EIJ66456.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosopumilus
salaria BD31]
Length = 1263
Score = 125 bits (314), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHSTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE VA LT PE V N E +++LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGV 378
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+ G L+ G AEE LEA I+ EL RD AG L SN +MA +G++GS +N
Sbjct: 677 DKGTLKLTRGMKAEEALEAYIVNELGKARDKAGSTANDSLDNSNAGKIMATTGARGSSLN 736
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ QM +GQQ+ G R+ +G+ NR+L HF + +P + G VK
Sbjct: 737 VGQMAGALGQQSRRGNRLHDGYQNRALTHFQEHDSNPDAHGFVK 780
>gi|20159749|gb|AAM12029.1| RNA polymerase III subunit RPC155-A [Homo sapiens]
Length = 374
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 56/70 (80%), Positives = 62/70 (88%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPN 70
RTVISPDPN
Sbjct: 365 GRTVISPDPN 374
Score = 41.2 bits (95), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>gi|378732247|gb|EHY58706.1| DNA-directed RNA polymerase III subunit C1 [Exophiala dermatitidis
NIH/UT8656]
Length = 1581
Score = 125 bits (314), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/112 (56%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W++L L+ A++INS+ G+ K + RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 320 VVEHWDYLTLNLAMYINSDVPGLAKGEFGK-QIRGFVQRLKGKQGRFRGNLSGKRVDFSG 378
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P VAK +TYPE V+ N E L+Q V NG PG
Sbjct: 379 RTVISPDPNLRIDEVAVPILVAKNMTYPEVVNEINIEKLRQRVRNGTKVWPG 430
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 83/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L++AK ++++ + +C+ ++R + G+L+ +PG TLEA ++ LS +R +
Sbjct: 722 LVKAKHEMIAKVFEECKAFVRLSKEGKLKRKPGLDDAGTLEAEQIRILSTVRTNIAGLLT 781
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+L N P+VMA+SGSKGS IN++QM A +GQQ I GKRV +GF +R+LPHF K + P
Sbjct: 782 AQLSKRNSPMVMAISGSKGSNINVAQMAALLGQQDIEGKRVQDGFQDRTLPHFAKHERSP 841
Query: 234 ASKGNV 239
SKG +
Sbjct: 842 PSKGFI 847
Score = 62.4 bits (150), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 36/50 (72%)
Query: 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
E +T +PPPA++KP+ LWTGKQ+FS++L+PN+ PV NL R ++
Sbjct: 586 EPDTKFELPPPAVIKPQTLWTGKQVFSVMLRPNKQSPVTVNLDAASRDHS 635
>gi|325091897|gb|EGC45207.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 1456
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ Y++C+ I+ ++G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I +RV +GF +R+LPHF
Sbjct: 776 QAGEICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHARQPPAKGFVR 849
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ VA +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L E +T +PPP+++KP+ LWTGKQ+F+++++PN+ PV NL R +
Sbjct: 583 LYMLESDTLFDLPPPSVLKPQILWTGKQVFNVLMRPNKQSPVLINLDAACREF 635
>gi|225554972|gb|EEH03266.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus G186AR]
Length = 1456
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ Y++C+ I+ ++G+L+ PGC + T+E I LS +R
Sbjct: 716 DVYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQ 775
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG+ C+ EL N PL+MA SGSKGS IN++QM+A VGQQ I +RV +GF +R+LPHF
Sbjct: 776 QAGEICIAELSRWNSPLIMATSGSKGSDINVAQMVALVGQQIIGNQRVQDGFQDRTLPHF 835
Query: 227 DKFSKDPASKGNVK 240
K ++ P +KG V+
Sbjct: 836 PKHARQPPAKGFVR 849
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ VA +TYPE+V NKE L+Q + NG PG
Sbjct: 380 RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 431
Score = 57.8 bits (138), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L E +T +PPP+++KP+ LWTGKQ+F+++++PN+ PV NL R +
Sbjct: 583 LYMLESDTRFDLPPPSVLKPQILWTGKQVFNVLMRPNKQSPVLINLDAACREF 635
>gi|167043884|gb|ABZ08573.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG3E18]
Length = 1273
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ HC + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 269 IVQDLVDLLQYHCTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 325
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+P +A LT PE V N E LK+LV+NGP+ PG+
Sbjct: 326 VDFSSRTVISPDPNLDLGEVGVPVQIATKLTIPEIVTEWNIEKLKKLVVNGPNTFPGV 383
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 65/125 (52%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
+A + L + Y I G L+ G + ET EA I EL+ RD AG
Sbjct: 661 QAIDNDLQQTYKTVAEIIADKNKGTLKGLRGMTIAETAEAKITYELAKARDRAGITANSN 720
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N +MA +G++GS +N+ QM +GQQ+ GKR+ G+ NR+LPHF + +P S
Sbjct: 721 LADDNAGKIMATTGARGSALNVGQMAGALGQQSRRGKRLHTGYGNRTLPHFKEHDDNPDS 780
Query: 236 KGNVK 240
G VK
Sbjct: 781 HGFVK 785
>gi|340344217|ref|ZP_08667349.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339519358|gb|EGP93081.1| DNA-directed RNA polymerase subunit A [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 1263
Score = 125 bits (313), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHTTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE VA LT PE V N E ++ LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEQVAMKLTIPEIVTEWNIERMRTLVINGPNKFPGV 378
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 65/119 (54%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E Y E G L+ G EE LEA I+ EL RD AG Q L SN
Sbjct: 662 IQETYGIISDLTSQYEKGTLKLTRGMRPEEALEAYIVNELGKARDKAGMTADQSLDQSNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +NI QM +GQQ+ G R+ G++NR+LPH+ + K+P + G VK
Sbjct: 722 GRIMATTGARGSALNIGQMAGALGQQSRRGSRLHAGYNNRALPHYQEHDKNPDAHGFVK 780
>gi|167044137|gb|ABZ08820.1| putative RNA polymerase Rpb1, domain 2 [uncultured marine
crenarchaeote HF4000_APKG5C13]
Length = 1268
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ HC + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHCTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+P +A LT PE V N E LK+LV+NGP+ PG+
Sbjct: 321 VDFSSRTVISPDPNLDLGEVGVPMSIATKLTIPEIVTEWNIEKLKKLVINGPNTFPGV 378
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 63/119 (52%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
L E Y K I G L+ G + ET EA I EL+ RD AG L N
Sbjct: 662 LQETYDKVADIIVQKNKGTLKGLRGMTVSETAEAKITYELARARDRAGVTANSNLEDDNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +N+ QM +GQQ+ GKR+ G+ NR+LPHF + +P S G VK
Sbjct: 722 GKIMATTGARGSALNVGQMAGVLGQQSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVK 780
>gi|161527856|ref|YP_001581682.1| bifunctional DNA-directed RNA polymerase subunit A'/A''
[Nitrosopumilus maritimus SCM1]
gi|160339157|gb|ABX12244.1| DNA-directed RNA polymerase subunit A' [Nitrosopumilus maritimus
SCM1]
Length = 1263
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHTTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE VA LT PE V N E +++LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEAVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGV 378
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 58/102 (56%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
G L+ G EE LEA I+ EL RD AG + L N +MA +G++GS +N+
Sbjct: 679 GTLKLTRGMKPEEALEAYIVNELGKARDKAGSSANDCLPADNAGKIMATTGARGSSLNVG 738
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
QM +GQQ+ G R+ G++NR+L H+ + +P + G VK
Sbjct: 739 QMAGALGQQSRRGNRLHEGYNNRALTHYQEHDDNPDAHGFVK 780
>gi|2127864|pir||A64430 DNA-directed RNA polymerase (EC 2.7.7.6) subunit A'
(intein-containing) - Methanococcus jannaschii
Length = 1345
Score = 124 bits (312), Expect = 6e-26, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 268 IIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 327
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L I +VG+PE VAK LT PE+V N E ++QL+ NG +KHPG+
Sbjct: 328 SSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIR 387
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ ++ E ++ ES +
Sbjct: 388 KMIGRDGTEQEYKVKITESNK 408
Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L E K + I E G L+ PG + EE+ EA I L RD AG +
Sbjct: 1122 LKEIEKVLDEAEEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAER 1181
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G+ +N++QM AC+GQQ++ GKR+ G+ R LPHF+K
Sbjct: 1182 YLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGAR 1241
Query: 235 SKGNVK 240
S G V+
Sbjct: 1242 SHGFVR 1247
>gi|15669231|ref|NP_248036.1| DNA-directed RNA polymerase subunit alpha [Methanocaldococcus
jannaschii DSM 2661]
gi|3915860|sp|Q58445.2|RPOA1_METJA RecName: Full=DNA-directed RNA polymerase subunit A'; Contains:
RecName: Full=Mja rpoA1 intein; AltName: Full=Mja rpol
A' intein
gi|2826359|gb|AAB99046.1| DNA-directed RNA polymerase, subunit A' (rpoA1) [Methanocaldococcus
jannaschii DSM 2661]
Length = 1341
Score = 124 bits (312), Expect = 6e-26, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L I +VG+PE VAK LT PE+V N E ++QL+ NG +KHPG+
Sbjct: 324 SSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIR 383
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ ++ E ++ ES +
Sbjct: 384 KMIGRDGTEQEYKVKITESNK 404
Score = 92.4 bits (228), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L E K + I E G L+ PG + EE+ EA I L RD AG +
Sbjct: 1118 LKEIEKVLDEAEEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAER 1177
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G+ +N++QM AC+GQQ++ GKR+ G+ R LPHF+K
Sbjct: 1178 YLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGAR 1237
Query: 235 SKGNVK 240
S G V+
Sbjct: 1238 SHGFVR 1243
>gi|288561071|ref|YP_003424557.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
gi|288543781|gb|ADC47665.1| DNA-directed RNA polymerase subunit A' RpoA1 [Methanobrevibacter
ruminantium M1]
Length = 926
Score = 124 bits (312), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W+ LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 267 IVEDLWQLLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +AK +T P V+ N E L++ +LNGPD HPG
Sbjct: 327 SARTVISPDPNISINEVGVPEMIAKEVTVPTYVNEWNIEDLREAILNGPDAHPG 380
Score = 78.6 bits (192), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 65/133 (48%), Gaps = 15/133 (11%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQEL----- 176
L K + I E G LQ PG SAEETLE I++ L RD AG L
Sbjct: 694 LDNAEQKVDKLIETYEMGELQPLPGRSAEETLEMRIVQVLGEARDAAGDIAAGYLTMGKQ 753
Query: 177 ----------HPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA +G++ S +N++Q+ ACVGQQ++ G R+ G+ R LPHF
Sbjct: 754 SPDDSYDHVMAVENHSVVMAKTGARASMLNLAQITACVGQQSVRGGRITRGYLARPLPHF 813
Query: 227 DKFSKDPASKGNV 239
K +KG V
Sbjct: 814 RKHELGARAKGFV 826
>gi|118576747|ref|YP_876490.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
gi|118195268|gb|ABK78186.1| DNA-directed RNA polymerase, beta' subunit/160 kD subunit
[Cenarchaeum symbiosum A]
Length = 1260
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 61/115 (53%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++Q+ + LQ H + ++E SGIP + + L QRLKGK+GRFRG+LSGKRVDF
Sbjct: 264 IVQDLVDLLQYHATTYFDNEISGIPQAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
+SRTVISPDPNL + +VG+PE VA LT PE V N +K+LV+NGPD +PG+
Sbjct: 324 SSRTVISPDPNLDLSEVGVPESVAMKLTIPEIVTEWNIARMKELVVNGPDHYPGV 378
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 48/115 (41%), Positives = 67/115 (58%)
Query: 126 YSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVM 185
Y K GYI + G L+ G S +E LEA I+ ELS RD AG Q +N +M
Sbjct: 663 YDKVYGYIADAKKGGLRLTRGLSPDEALEAYIVSELSRARDTAGGIADQSFDHTNAGKIM 722
Query: 186 ALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
A +G++GS +NI QM +GQQ+ G+R+ G++NR+LPHF + P + G VK
Sbjct: 723 ASTGARGSSLNIGQMAGSLGQQSRRGQRLLKGYNNRALPHFRENDDSPDAHGFVK 777
>gi|407461850|ref|YP_006773167.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
gi|407045472|gb|AFS80225.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosopumilus koreensis AR1]
Length = 1263
Score = 124 bits (312), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 63/118 (53%), Positives = 84/118 (71%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHTTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE VA LT PE V N E +++LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEVVAMKLTIPEIVTEWNIERMRKLVINGPEKFPGV 378
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 62/119 (52%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E Y + G L+ G EE LEA I+ EL RD AG L N
Sbjct: 662 IQETYDIVDDLTDQFNKGTLKLTRGMRPEEALEAYIVNELGKARDKAGSTANDCLPADNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +N+ QM +GQQ+ G R+ +G++NR+L H+ + +P + G VK
Sbjct: 722 GKIMATTGARGSSLNVGQMAGALGQQSRRGNRLHDGYNNRALTHYQEHDNNPDAHGFVK 780
>gi|329765754|ref|ZP_08257323.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|329137820|gb|EGG42087.1| DNA-directed RNA polymerase subunit A' [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 1263
Score = 124 bits (311), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 62/118 (52%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHATTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE +A LT PE V N E ++ LV+NGP+K PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRTLVINGPNKFPGV 378
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E Y E G L+ G EE LEA I+ EL RD AG Q L SN
Sbjct: 662 IQETYGVISDLTSQYEKGTLKLTRGMKPEEALEAYIVNELGKARDKAGMTADQSLDQSNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +NI QM +GQQ+ G R+ G++NR+LPH+ + +P + G VK
Sbjct: 722 GRIMATTGARGSALNIGQMAGALGQQSRRGSRLHAGYNNRALPHYQEHDNNPDAHGFVK 780
>gi|435852040|ref|YP_007313626.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
hollandica DSM 15978]
gi|433662670|gb|AGB50096.1| DNA-directed RNA polymerase subunit A' [Methanomethylovorans
hollandica DSM 15978]
Length = 880
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 90/143 (62%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++E SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 261 IIEDLWELLQYHVTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTV+SPDPNL I +VG+PE +A +T PERV N E L+ +L G D HPG ++R
Sbjct: 321 SARTVVSPDPNLSINEVGVPEAIAIQMTIPERVIERNIELLRMYILKGSDVHPGANYVIR 380
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
ER + + E +E G
Sbjct: 381 PDERRIKITENNKEELAEKVEKG 403
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 73/120 (60%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L++ S+ + I A E+ L+ PG + +ET+E I++ L RD G EL N
Sbjct: 663 VLTKAESEVQDLIAAYEAKELEPLPGRTLDETIEMKIMQTLGKARDQTGNIAGNELGLEN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+ R+LPHFDK + G VK
Sbjct: 723 SAVIMAKSGARGSMLNLTQMAACVGQQAVRGERIRRGYAGRTLPHFDKGDLGADAHGFVK 782
>gi|240274343|gb|EER37860.1| DNA-directed RNA polymerase III largest subunit [Ajellomyces
capsulatus H143]
Length = 1333
Score = 124 bits (311), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 78/112 (69%), Gaps = 1/112 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I E W+++QL A++INS+ G+ RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 288 IIECWDYMQLQLAVYINSDVPGLQ-KADFGKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 346
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +P+ VA +TYPE+V NKE L+Q + NG PG
Sbjct: 347 RTVISPDPNLRVNEVAVPQLVAMNMTYPEQVTRYNKEKLRQRIRNGTKTWPG 398
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +PG LL K ++ Y++C+ I+ ++G+L+ PGC + T+E I LS +R
Sbjct: 683 DVYPGEKLLEEKHHIVEHAYAQCDEVIQLFKNGKLEKAPGCDEQMTMENAISGLLSKVRQ 742
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIA---------CVGQQAINGKRVPNG 217
AG+ C+ EL N PL+MA SG S ++S V Q + K P
Sbjct: 743 QAGEICIAELSRWNSPLIMATSGLMKSLEDLSTRYDDTVRNSSSNIVQFQYGDDKLDPVD 802
Query: 218 FDNRSLP-HFDK 228
+ R+ P HFD+
Sbjct: 803 MEGRAKPVHFDR 814
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
L E +T +PPP+++KP+ LWTGKQ+F+++++PN+ PV NL R +
Sbjct: 550 LYMLESDTLFDLPPPSVLKPQILWTGKQVFNVLMRPNKQSPVLINLDAACREF 602
>gi|169806385|ref|XP_001827937.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
[Enterocytozoon bieneusi H348]
gi|161779005|gb|EDQ31032.1| DNA-directed RNA polymerase, beta' subunit-160 kD subunit
[Enterocytozoon bieneusi H348]
Length = 1174
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 61/108 (56%), Positives = 78/108 (72%), Gaps = 2/108 (1%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ EDW++LQL AL+INS+ I + KS +I RLKGKQGRFR NLSGKRVDF+
Sbjct: 255 LNEDWDYLQLQIALYINSDLPSIHITNNDNIKS--IIHRLKGKQGRFRMNLSGKRVDFSG 312
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPD 109
RTVISP+PNL I Q+G+P+ +A +T PE+V NKE L+ LV NGP+
Sbjct: 313 RTVISPNPNLSIEQIGVPKEIALEMTIPEKVTVFNKEELQILVNNGPN 360
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 46/66 (69%)
Query: 161 LSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN 220
L+ IR+ G CL L+ +N +VMA GSKGS INISQMI CVGQQ ++G R+ NG +
Sbjct: 679 LNKIREDCGTMCLNTLNKNNAAVVMAECGSKGSKINISQMITCVGQQIVSGMRIQNGMYD 738
Query: 221 RSLPHF 226
+++PH
Sbjct: 739 KTIPHM 744
>gi|385805645|ref|YP_005842043.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
gi|383795508|gb|AFH42591.1| DNA-directed RNA polymerase subunit alpha [Fervidicoccus fontis
Kam940]
Length = 882
Score = 124 bits (311), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I + WE LQ H + ++E GIP ++ + L QRLKGK+GRFRG LSGKRVDF
Sbjct: 263 VIDDIWELLQYHVTTYFDNEVPGIPPAKHRTGRALKTLAQRLKGKEGRFRGYLSGKRVDF 322
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDPN+ I +VG+PE AKILT P +V N E ++ VLNGP K PG
Sbjct: 323 SSRTVISPDPNIGINEVGVPEDAAKILTVPVKVTQWNLEEMRSYVLNGPYKWPG 376
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/120 (42%), Positives = 74/120 (61%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
++L + IR ME GRL+ PG + EETLE I++ LS RD AG+ L
Sbjct: 665 KILKKAEDDVNELIRMMEEGRLEPLPGRTIEETLETKIMERLSKARDDAGEYAANNLDIF 724
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N +MA +G++G+ +N++QM A +GQQ+I G+R+ G+ NR LPHF + K PAS+G V
Sbjct: 725 NNAFIMARTGARGNILNLTQMSATLGQQSIRGERINRGYRNRPLPHFKENDKSPASRGFV 784
>gi|342183998|emb|CCC93479.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma
congolense IL3000]
Length = 1537
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/110 (51%), Positives = 78/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P +++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWELLQMRAARLLDSALPGFPPSVR-TSDLKSYAQRLKSKNGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV +N E +++LV NGPD HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKSNHELMRRLVRNGPDVHPG 420
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K +L+ C I + ++GR+ PG + ++LEA + ELS +RD G A +Q L
Sbjct: 714 KAAVLNRSVETCNRLIASAKTGRMIPLPGLTVRQSLEARLNTELSKVRDECGTAAMQTLS 773
Query: 178 -PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASK 236
SN PL+M SGSKGS +NI+QM+ACVGQQ +NG+R+ + F +RSLPHF +F + PA++
Sbjct: 774 IDSNTPLLMVQSGSKGSALNIAQMMACVGQQTVNGRRILDAFQDRSLPHFHRFEEAPAAR 833
Query: 237 GNV 239
G V
Sbjct: 834 GFV 836
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
+P PAI+KP LWTGKQ+F LIL+P+ + + + + YT K
Sbjct: 584 LPIPAILKPTELWTGKQLFELILRPSPEVDILLTFEAPTKFYTKK 628
>gi|133355|sp|P08968.1|RPC1_TRYBB RecName: Full=DNA-directed RNA polymerase III subunit RPC1;
Short=RNA polymerase III subunit C1; AltName:
Full=DNA-directed RNA polymerase III largest subunit;
AltName: Full=RNA polymerase III subunit C160
gi|10524|emb|CAA31014.1| unnamed protein product [Trypanosoma brucei]
Length = 1530
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV AN E +++LV NGP HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPG 420
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K +L+ C+G I++ ++GR+ PG + +++LEA + ELS +RD G A
Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+Q L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ + F +RSLPHF +F
Sbjct: 768 AVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFE 827
Query: 231 KDPASKGNV 239
+ PA++G V
Sbjct: 828 EAPAARGFV 836
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T +P PAI+KP LWTGKQ+F LI++P+ + V + + + YT K
Sbjct: 580 TQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRK 628
>gi|261332267|emb|CBH15261.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma brucei
gambiense DAL972]
Length = 1530
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV AN E +++LV NGP HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPG 420
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K +L+ C+G I++ ++GR+ PG + +++LEA + ELS +RD G A
Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+Q L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ + F +RSLPHF +F
Sbjct: 768 AVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFE 827
Query: 231 KDPASKGNV 239
+ PA++G V
Sbjct: 828 EAPAARGFV 836
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T +P PAI+KP LWTGKQ+F LI++P+ + V + + + YT K
Sbjct: 580 TQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRK 628
>gi|162223|gb|AAA30233.1| RNA polymerase III [Trypanosoma brucei]
Length = 1530
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV AN E +++LV NGP HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPG 420
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K +L+ C+G I++ ++GR+ PG + +++LEA + ELS +RD G A
Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+Q L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ + F +RSLPHF +F
Sbjct: 768 AVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFE 827
Query: 231 KDPASKGNV 239
+ PA++G V
Sbjct: 828 EAPAARGFV 836
Score = 46.2 bits (108), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T +P PAI+KP LWTGKQ+F LI++P+ + V + + + YT K
Sbjct: 580 TQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRK 628
>gi|71746952|ref|XP_822531.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma
brucei]
gi|70832199|gb|EAN77703.1| DNA-directed RNA polymerase III largest subunit [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 1530
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV AN E +++LV NGP HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPG 420
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K +L+ C+G I++ ++GR+ PG + +++LEA + ELS +RD G A
Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+Q L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ + F +RSLPHF +F
Sbjct: 768 AVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFE 827
Query: 231 KDPASKGNV 239
+ PA++G V
Sbjct: 828 EAPAARGFV 836
Score = 46.2 bits (108), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T +P PAI+KP LWTGKQ+F LI++P+ + V + + + YT K
Sbjct: 580 TQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRK 628
>gi|374724391|gb|EHR76471.1| DNA-directed RNA polymerase subunit A [uncultured marine group II
euryarchaeote]
Length = 1044
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + +++TSGIP ++ + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 271 IVEDLWELLQYHVTTYFDNQTSGIPPARHRSGRTLKTLTQRLKGKEGRFRSNLSGKRVNF 330
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
+R+VISPDP L + +VG+P +AK LT P RV N+E ++Q++L GPD HPG+
Sbjct: 331 CARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTSRNREQMRQMILRGPDVHPGV 385
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 57/99 (57%), Gaps = 3/99 (3%)
Query: 142 QTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS---NGPLVMALSGSKGSFINIS 198
+++PG +A ETLE I+ L + AG EL S N + MA+SG++GS N++
Sbjct: 814 ESRPGRTARETLEEDIMVLLDQGKQEAGDIAKDELAKSGSTNAAVNMAISGARGSMDNLN 873
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
M +GQ + GKR+ G++ R LPHF + ++ A +G
Sbjct: 874 MMAGSIGQAKVRGKRLERGYNERVLPHFRRGGREAADRG 912
>gi|291336401|gb|ADD95958.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C1]
Length = 1064
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 82/115 (71%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + +++TSGIP ++ + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 289 IVEDLWELLQYHVTTYFDNQTSGIPPARHRSGRTLKTLTQRLKGKEGRFRSNLSGKRVNF 348
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
+R+VISPDP L + +VG+P +AK LT P RV N+E ++Q++L GPD HPG+
Sbjct: 349 CARSVISPDPYLGVNEVGVPTKIAKELTVPIRVTTRNREQMRQMILRGPDVHPGV 403
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
Query: 142 QTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS---NGPLVMALSGSKGSFINIS 198
+T+PG + +ETLE I+ L + + AG EL+ S N + MA+SG++GS N++
Sbjct: 830 ETRPGRTPKETLEENIMVILDLGKQAAGDVAKDELNESGNSNAAVGMAISGARGSMDNLT 889
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
M +GQ + G R+ G+ R LPHF + KG
Sbjct: 890 MMAGSIGQAKVRGARLERGYHQRVLPHFKRGGLGAPEKG 928
>gi|452844664|gb|EME46598.1| hypothetical protein DOTSEDRAFT_70566 [Dothistroma septosporum
NZE10]
Length = 1491
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 74/112 (66%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE++Q+ A++I+ G+ + RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 322 VMELWEFMQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNLSGKRVDFSG 381
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ VA +TYPERV N E LK + G HPG
Sbjct: 382 RTVISPDPNLAIDEVAVPQRVAVNMTYPERVTKHNFEKLKACIRRGDKVHPG 433
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/122 (46%), Positives = 75/122 (61%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K+ L+ Y C+ I + G+L+ PGC E+T+E + LS +R AC EL
Sbjct: 745 KQELIDTAYKACDEVIDKFKKGKLERSPGCDEEQTMEITLSGILSKVRAQCADACFAELS 804
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
N P+ MA GSKGS IN+SQM+A VGQQ I G+RV GF +R+LPHF K S+DP +KG
Sbjct: 805 KFNAPMTMAKCGSKGSNINVSQMVASVGQQIIGGQRVLEGFQDRTLPHFPKASRDPLAKG 864
Query: 238 NV 239
V
Sbjct: 865 FV 866
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 35/43 (81%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAI KP+ LWTGKQI++L++KP+RD PVN NL+ K + +
Sbjct: 610 IPPPAIWKPQTLWTGKQIWNLLMKPHRDYPVNVNLEAKLKQFA 652
>gi|305663642|ref|YP_003859930.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
gi|304378211|gb|ADM28050.1| DNA-directed RNA polymerase, subunit A' [Ignisphaera aggregans DSM
17230]
Length = 884
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I + WE LQ H ++++E G+P + + L QRLKGK+GRFRGNLSGKRVD+
Sbjct: 265 IIDDLWELLQYHVTTYLDNEVPGLPPAKHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVDY 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISP+P L I +VG+P VAKILT PE+V N E +++LV+NGP++ PG
Sbjct: 325 SARTVISPEPYLSINEVGVPIDVAKILTVPEKVTEWNIEEMRKLVINGPNRWPG 378
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/119 (33%), Positives = 70/119 (58%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E +SK E ++ G+L+ PG S EE+LE IL+ L+ RD AG+ + L P N
Sbjct: 668 IIKEAFSKVEELVKQYVEGKLEVVPGRSLEESLEIKILEILAEARDKAGEVAVNRLDPFN 727
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+MA +G++G+ +N++QM A +GQ + G+R+ G+ R + + + P ++G V
Sbjct: 728 NAFIMARTGARGNVLNLTQMSATLGQMTVRGERIWRGYMGRPISSYGQNDLGPLARGFV 786
Score = 38.5 bits (88), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKT 344
+P PAI+ PK LWTGKQI S+ L + + AN+ +
Sbjct: 538 LPEPAILSPKRLWTGKQIISMFLPEDFNYHGKANISS 574
>gi|398409068|ref|XP_003855999.1| DNA-directed RNA polymerase III subunit RPO31 [Zymoseptoria tritici
IPO323]
gi|339475884|gb|EGP90975.1| hypothetical protein MYCGRDRAFT_83445 [Zymoseptoria tritici IPO323]
Length = 1435
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 80/125 (64%), Gaps = 1/125 (0%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
LR KE L+ Y +C+ I + G+L+ GC E+T+E ++ LS +R G AC
Sbjct: 682 LRKKE-LVDAAYRQCDEIIDKFKKGQLERSAGCDEEQTMEILMSGILSAVRQQCGDACFA 740
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
EL N PL MA GSKGS IN+SQM+A VGQQ I GKRV +GF +R+LPHF K S+DP
Sbjct: 741 ELSKFNAPLTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLDGFQDRTLPHFPKASRDPL 800
Query: 235 SKGNV 239
+KG V
Sbjct: 801 AKGFV 805
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 33/42 (78%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IP PAI KP+ LWTGKQI+ +++KP+R PVN NL+ K +++
Sbjct: 549 IPAPAIWKPQTLWTGKQIWDVLMKPHRHYPVNVNLEAKLKSF 590
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 23/42 (54%)
Query: 72 QIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ QV +P VA +TYPERV N E LK V G HPG
Sbjct: 331 EFLQVAVPMRVAVNMTYPERVTKHNFEKLKACVRRGDKVHPG 372
>gi|170291135|ref|YP_001737951.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170175215|gb|ACB08268.1| DNA-directed RNA polymerase subunit A [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 1324
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 83/115 (72%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
M++ +W+ LQ ++F N+ T+G+P+ MQ ++ + L QRL GK+GR R NL GKRV+
Sbjct: 278 MVESEWDHLQYWVSVFFNNATAGMPVAMQKGTRRPLKSLFQRLSGKEGRLRKNLIGKRVN 337
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++RTVISPDP + I +VG+P +A +LT PE V+ N E +K+LV+ GPD++PG
Sbjct: 338 FSARTVISPDPMIDIDEVGVPVEIAMVLTVPEYVNENNIEKMKELVMRGPDEYPG 392
Score = 43.9 bits (102), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 34/175 (19%)
Query: 75 QVGIPEHVAKILTYPERVHHANKEHLKQLVLNGP-DKHPGLLRAKERLLSEGYSKCEGYI 133
++ IPE + + E ++ KE + +L+ + P + + R KE LL
Sbjct: 674 ELMIPEEAKREI---EEIYSNMKEEVTRLIRSRPITRKITIYRTKEELL----------- 719
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R M E+ LE I++ + + + P + +MA +G++GS
Sbjct: 720 RIMRE-----------EQMLEFDIVQTMDSFWGKVSSVISKYIDPKSNVSIMAKTGARGS 768
Query: 194 FINISQMIACVGQQAINGK--------RVPNGFDNRSLPHFDKFSKDPASKGNVK 240
N++Q++ VGQQ + + R G+ +R L +F + P ++G VK
Sbjct: 769 MANLAQIVGQVGQQKVKTRIGFVLTSGRPRKGYKDRVLSYFQRGDLSPEARGFVK 823
>gi|154417868|ref|XP_001581953.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
gi|121916185|gb|EAY20967.1| RNA polymerase Rpb1, domain 2 family protein [Trichomonas vaginalis
G3]
Length = 1657
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/132 (47%), Positives = 86/132 (65%), Gaps = 2/132 (1%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD++ L K +S+ Y C I +SG+L+ PG + TLEA + +LS +R+
Sbjct: 675 PDEN--LTNNKNAQISKTYQDCYDKIAEYDSGKLEAAPGMTKLATLEAFLNGQLSELRNK 732
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
GK C+ EL P N PLVMA SG+KGS INI QM+AC+GQQ++ GKR+ + F +RS+PHF
Sbjct: 733 IGKMCMAELSPINTPLVMAKSGAKGSDINICQMMACLGQQSVGGKRIIDDFIDRSIPHFK 792
Query: 228 KFSKDPASKGNV 239
SKDP SKG +
Sbjct: 793 HGSKDPISKGFI 804
Score = 111 bits (278), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSR-GLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E W LQ + INSE + + K+K G+IQRLKGKQGRFR NLSGKRV+++ R
Sbjct: 282 ELWSSLQQNVNSSINSEAADTAAKTKKKNKPVIGVIQRLKGKQGRFRTNLSGKRVNYSGR 341
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN+ + QV IP +AKILT+P RV NK+ L + V NGPDK+PG
Sbjct: 342 TVISPDPNVNVDQVVIPVSMAKILTFPTRVTKFNKKDLMRYVKNGPDKYPG 392
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
V IPPPAI+KP LWTGKQ+ SL++ PN+ ++ + + YT + KD +
Sbjct: 553 VDIPPPAIVKPYQLWTGKQVVSLMIAPNKKTDLHFTHQVGNKEYTGNKEMCKKDGY 608
>gi|12642616|gb|AAK00312.1|AF315822_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monoblepharis
macrandra]
Length = 1603
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/135 (42%), Positives = 94/135 (69%), Gaps = 4/135 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E W+ LQ H A ++++ SG+P+ Q + +G+ QRLKGK+GR RGNL GKRVDF
Sbjct: 224 VVNEFWDLLQYHVATMMDNQISGLPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I +VG+P + + LT+PE V+ N++HL++LV NG +++PG ++R
Sbjct: 284 SARTVITGDPNISIDEVGVPRSICRNLTFPEIVNDYNRDHLQKLVANGTNEYPGANRVIR 343
Query: 117 AKERLLSEGYSKCEG 131
A ++S ++ G
Sbjct: 344 ANGDIVSLKHTAGSG 358
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++ +L +PG + ET E+ + K L+ RD AGK + L N M ++GSKG
Sbjct: 634 IKNAQANKLDAEPGMTVRETFESKVNKVLNKARDDAGKKAEKSLKIYNNVKQMVIAGSKG 693
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 694 SFINISQMTACVGQQNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLR 746
>gi|449329642|gb|AGE95912.1| DNA-directed RNA polymerase II, partial [Encephalitozoon cuniculi]
Length = 1487
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A FI+++ G+P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P +AKI T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + +++ EGY+ R M+SG
Sbjct: 379 SDGQKIDLNFNRSDIRLEEGYVVERHMQSG 408
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ E + + + I RL+ PG + +E+ E+ + L+ RD +G +
Sbjct: 667 PKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTS 726
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L +N M L+GSKGSFINISQ+ ACVGQQ + GKR+P GF +R+LPHF K
Sbjct: 727 AQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDY 786
Query: 232 DPASKGNVK 240
S+G V+
Sbjct: 787 TGKSRGFVE 795
>gi|19172989|ref|NP_597540.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
gi|51702033|sp|Q8SSC4.1|RPB1_ENCCU RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|19168656|emb|CAD26175.1| DNA-DIRECTED RNA POLYMERASE II [Encephalitozoon cuniculi GB-M1]
Length = 1599
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A FI+++ G+P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P +AKI T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + +++ EGY+ R M+SG
Sbjct: 379 SDGQKIDLNFNRSDIRLEEGYVVERHMQSG 408
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ E + + + I RL+ PG + +E+ E+ + L+ RD +G +
Sbjct: 667 PKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTS 726
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L +N M L+GSKGSFINISQ+ ACVGQQ + GKR+P GF +R+LPHF K
Sbjct: 727 AQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDY 786
Query: 232 DPASKGNVK 240
S+G V+
Sbjct: 787 TGKSRGFVE 795
>gi|120561213|gb|ABM26992.1| RNA polymerase II largest subunit, partial [Capniomyces stellatus]
Length = 1024
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 227 IIEEFESLLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 286
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN++I QVG+P +AK LTYPE V N + L+++V NGP++HPG ++R
Sbjct: 287 SARTVIAGDPNIEIDQVGVPRSIAKNLTYPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIR 346
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 347 DSGERIDLRYSKRGGDI 363
Score = 101 bits (251), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+++E Y + + I+ RL PG + +ET E+ EL+ RD AGK+ L N
Sbjct: 626 IITESYMRVDEMIKDTIEDRLDCLPGMTLKETFESGTNLELNRARDLAGKSVQTRLKECN 685
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M +SGSKGS+IN+SQM A VGQQ + G+R+P GF NR+LPHF K P S+G V+
Sbjct: 686 NVRKMVVSGSKGSYINVSQMTAAVGQQNVEGRRIPFGFRNRTLPHFTKDDYSPQSRGFVE 745
Query: 241 --FLR 243
+LR
Sbjct: 746 NSYLR 750
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+IP P I+KP+ LW+GKQIFSLI+ +C
Sbjct: 498 LIPTPCILKPQPLWSGKQIFSLIIPKGINC 527
>gi|393794932|ref|ZP_10378296.1| bifunctional DNA-directed RNA polymerase subunit A'/A'' [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 1263
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/118 (51%), Positives = 83/118 (70%), Gaps = 7/118 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
++Q+ + LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKR
Sbjct: 264 IVQDLVDLLQYHATTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKR 320
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
VDF+SRTVISPDPNL + +VG+PE +A LT PE V N E +++LV+NGP+ PG+
Sbjct: 321 VDFSSRTVISPDPNLDLSEVGVPEQIAMKLTIPEIVTEWNIERMRKLVINGPNTFPGV 378
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/119 (38%), Positives = 64/119 (53%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E Y E G L+ G EE LEA I+ EL RD AG Q L SN
Sbjct: 662 IQETYGIISDLTSQYEKGTLKLTRGMKPEEALEAYIVNELGKARDKAGMTADQSLDQSNA 721
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +NI QM +GQQ+ G R+ G++NR+LPH+ + +P + G VK
Sbjct: 722 GRIMATTGARGSSLNIGQMAGALGQQSRRGSRLHAGYNNRALPHYQEHDNNPDAHGFVK 780
>gi|3169691|gb|AAC17924.1| RNA polymerase II largest subunit, partial [Pyropia yezoensis]
Length = 1685
Score = 123 bits (308), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/134 (47%), Positives = 87/134 (64%), Gaps = 4/134 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E LQ H A ++N++ G+P Q + + + QRLKGK+GR RGNL GKRVDF+
Sbjct: 215 LAEQIFLLQFHVATYMNNDLPGMPRAAQKSGRPLKSISQRLKGKEGRLRGNLMGKRVDFS 274
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
+RTVI+PDPNL++ QVG+P +AK LT+PE V N E ++QLV NGPD++P AK
Sbjct: 275 ARTVITPDPNLRLDQVGVPFSIAKNLTFPETVTAYNIEEMQQLVENGPDEYPD---AKYI 331
Query: 121 LLSEGYSKCEGYIR 134
+GY Y+R
Sbjct: 332 QRDDGYQVNLAYVR 345
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 61/107 (57%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R + G L PG S E+ E + K L+ RD +G + L SN M +GSKGS
Sbjct: 625 RRAQEGELTLLPGKSMMESFEVEVNKVLNGARDTSGSSAQLSLLKSNNIKRMVSAGSKGS 684
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
FINISQ+ ACVGQQ + GKR+ GF R+LPHF P S+G V+
Sbjct: 685 FINISQICACVGQQNVEGKRISYGFRRRTLPHFRMDDLGPESRGFVE 731
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 31/46 (67%)
Query: 285 RNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
R+ +L ++ SL +IPPPAI+KP+ LWTGKQ+FSL+L
Sbjct: 463 RDTFLRRDVTMSLLLHVEGWDGVIPPPAIIKPEPLWTGKQLFSLLL 508
>gi|410722153|ref|ZP_11361465.1| DNA-directed RNA polymerase subunit A'', partial [Methanobacterium
sp. Maddingley MBC34]
gi|410597472|gb|EKQ52085.1| DNA-directed RNA polymerase subunit A'', partial [Methanobacterium
sp. Maddingley MBC34]
Length = 721
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+P +A +T P V N E +K+ +LNGP+KHPG ++R
Sbjct: 317 SARTVISPDPNISINEVGVPHMIATEVTVPIYVTDWNIEDMKKYILNGPNKHPGANYVIR 376
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
ER + E I +E G
Sbjct: 377 PDERKIRVYDETKEAIIEKLEPG 399
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E LLS K E I A + L+ PG S ETLE I++ L RD +G+
Sbjct: 650 EELLSRAEQKVEMLIEAYHNDELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGM 709
Query: 179 SNGPLVMALSGS 190
N ++MAL+G+
Sbjct: 710 DNHAVIMALTGA 721
>gi|392574154|gb|EIW67291.1| hypothetical protein TREMEDRAFT_40446 [Tremella mesenterica DSM
1558]
Length = 1808
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H A ++++E +G+P +MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 305 VVDEQFDLLQFHVATYMDNEIAGLPQDMQKSGRPIKAIRARLKGKEGRMRGNLMGKRVDF 364
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P+ +A LTYPERV N +L+ LV NGP +PG
Sbjct: 365 SARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPSTYPG 418
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E + I E+ R++ +PG + ETLEA I EL+ RD GK L N
Sbjct: 701 MVEAKEAVQRLIAEAEANRMKPKPGMTIRETLEAGIATELNKARDWTGKTAQDNLKEDNN 760
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SG+KGSFINISQM VGQQ + GKR+ GF +R+LPHF K P S+G V+
Sbjct: 761 VKQMVVSGAKGSFINISQMTGVVGQQFVEGKRINFGFKHRTLPHFPKDDYGPESRGFVEN 820
Query: 241 -FLR 243
+LR
Sbjct: 821 SYLR 824
>gi|403223773|dbj|BAM41903.1| DNA-directed RNA polymerase III largest subunit RPC1 [Theileria
orientalis strain Shintoku]
Length = 1643
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/112 (54%), Positives = 81/112 (72%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+W+ LQ+ C FINSE G+ + ++ + RGL +RLKGK+GRFRGNLSGKRVDF++
Sbjct: 365 NWQILQVQCTRFINSEYPGLNHLLTSRNITKPGRGLCERLKGKEGRFRGNLSGKRVDFSA 424
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ I +V IPE +A+ LT+PERV N E +K+ +LNG PG
Sbjct: 425 RTVISPDPNVGIDEVVIPEWIARRLTFPERVSSYNIEVMKKAILNGESVWPG 476
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 81/126 (64%), Gaps = 2/126 (1%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K++LL +GY + + I E LQ PGC+ EETLE + L +R+ +GK C
Sbjct: 811 LINKKKQLLLDGYLRVDEAISNFEF--LQPYPGCTREETLELQVKSILDELRNESGKICT 868
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L P N PL+M SGSKG+ INI+QM+ACVGQQ ++G+R+ NGF R+LPHF KD
Sbjct: 869 SLLSPDNKPLIMFNSGSKGALINIAQMVACVGQQNVSGQRIQNGFIERTLPHFPMGCKDA 928
Query: 234 ASKGNV 239
S+G V
Sbjct: 929 KSRGFV 934
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 33/51 (64%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + V +PPP+I+ P LWTGKQ F+++++PNR V NL+ K R +
Sbjct: 629 FTDASIHVDLPPPSIVHPVTLWTGKQAFNVLIRPNRASKVMVNLRVKEREF 679
>gi|452982836|gb|EME82594.1| hypothetical protein MYCFIDRAFT_187946 [Pseudocercospora fijiensis
CIRAD86]
Length = 1442
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 73/112 (65%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ + WE+LQ+ A++I+ G+ + RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 324 VMDMWEFLQVQIAMYIDGNLPGLGRDSAYGKAMRGFCQRLKGKQGRFRGNLSGKRVDFSG 383
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P VA +TYPERV N E LK V G HPG
Sbjct: 384 RTVISPDPNLSIDEVAVPSRVAVNMTYPERVTKHNIEKLKACVGRGDKVHPG 435
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 79/126 (62%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + K+ L+ Y +C+ I + G+L+ GC E+T+E ++ LS +R G AC
Sbjct: 743 LTKRKQALVDAAYKQCDEIIDKYKKGKLERSAGCDEEQTMEILLSGILSKVRQQCGDACF 802
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N P+ MA GSKGS IN+SQM+A VGQQ I GKRV GF +R+LPHF K S+DP
Sbjct: 803 AELSKFNAPMTMAKCGSKGSNINVSQMVAAVGQQIIGGKRVLEGFQDRTLPHFPKASRDP 862
Query: 234 ASKGNV 239
+KG V
Sbjct: 863 LAKGFV 868
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%)
Query: 287 GWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKG 346
G++ + + + E + IPPPAI KP+ LWTGKQ+++L++KP+ PVN NL+ K
Sbjct: 591 GFMYNAMQVKDPYTGEEYPIQIPPPAIWKPQCLWTGKQVWNLLIKPHPKYPVNVNLEAKL 650
Query: 347 RAYT 350
+ Y
Sbjct: 651 KQYA 654
>gi|156088925|ref|XP_001611869.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
gi|154799123|gb|EDO08301.1| RNA polymerase Rpb1, domain containing protein [Babesia bovis]
Length = 1541
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 62/128 (48%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P LL K+ LL+EGY+K I ++ LQ PGC+ EETLE + + L +R+ AGKA
Sbjct: 761 PELLHHKQELLNEGYAKVTAAINNFDT--LQALPGCTREETLELQVKRVLDELRNEAGKA 818
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C L N PL+M SG+KG+ INI+QM+A VGQQ ++G+R+ NGF R+LPHFD
Sbjct: 819 CNSNLRADNKPLIMFNSGAKGALINIAQMVALVGQQNVSGQRIENGFIGRTLPHFDIGCM 878
Query: 232 DPASKGNV 239
D S+G V
Sbjct: 879 DAKSRGFV 886
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/118 (49%), Positives = 79/118 (66%), Gaps = 3/118 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
W+ LQL C IN+E + + ++ S RG+ QRLKGK+GRFRGNLSGKRVDF++R
Sbjct: 362 WQCLQLQCTRLINAEAPAVSQLLVSRNISKPGRGVCQRLKGKEGRFRGNLSGKRVDFSAR 421
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
TVISPDPN+ + +V +PE +A LT+PE V +N +K+ VLNG PG K++
Sbjct: 422 TVISPDPNVGVDEVVVPEWIAMKLTFPEEVTDSNISIMKKAVLNGVSIWPGATYVKKQ 479
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F + + V +PPPAI+ P LWTGKQ+F+ +L+PNR C V N + K R +
Sbjct: 625 FTDAASQVDLPPPAIIYPVMLWTGKQVFNALLRPNRRCKVVVNFECKEREF 675
>gi|150399424|ref|YP_001323191.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
gi|1173129|sp|P41556.1|RPOA1_METVS RecName: Full=DNA-directed RNA polymerase subunit A'
gi|505292|emb|CAA51728.1| DNA-directed RNA polymerase [Methanococcus vannielii]
gi|150012127|gb|ABR54579.1| DNA-directed RNA polymerase subunit A' [Methanococcus vannielii SB]
Length = 889
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIPE +AK LT PE+V N E +++L+ NG DKHPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGV 378
Score = 85.1 bits (209), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ LL + S + + E G L PG EE+ EA I++ L RD GK + L
Sbjct: 670 QDLLDKAESDVQEIVERYEGGTLDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +MA +G++GS +NI+ M A VGQQ++ G RV G+ R+LPHF + S D S G
Sbjct: 730 ENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGF 789
Query: 239 VK 240
V+
Sbjct: 790 VR 791
>gi|120561215|gb|ABM26993.1| RNA polymerase II largest subunit, partial [Furculomyces
boomerangus]
Length = 1024
Score = 122 bits (306), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 91/137 (66%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E + LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 227 IIEEFEKLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 286
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +TYPE V N E L+++V NGP++HPG ++R
Sbjct: 287 SARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIR 346
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 347 DSGERIDLRYSKRGGDI 363
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E Y + + IR + RL+ PG + +ET E+ + EL+ RD AGK L N
Sbjct: 626 IIRECYMRVDELIRDAQEDRLERLPGMTLKETFESKVNGELNRARDQAGKTVQNRLKECN 685
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M +SGSKGS+IN+SQM A VGQQ + GKR+P GF NR+LPHF K P S+G V+
Sbjct: 686 NVRRMVVSGSKGSYINVSQMTASVGQQNVEGKRIPFGFKNRTLPHFSKDDYSPQSRGFVE 745
Query: 241 --FLR 243
+LR
Sbjct: 746 NSYLR 750
Score = 41.2 bits (95), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
I+P P I+KP+ LW+GKQI+S+++ +C
Sbjct: 498 IVPTPCILKPQPLWSGKQIYSMVIPKGVNC 527
>gi|303388581|ref|XP_003072524.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
gi|303301665|gb|ADM11164.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
intestinalis ATCC 50506]
Length = 1543
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 97/150 (64%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A I++E G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATLIDNELGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P VAKI T+PERV N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEVAKIHTFPERVTSFNIDKLEKLVRAGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + +++ EGYI R M+SG
Sbjct: 379 SDGQKIDLNFNRSDIRLEEGYIVERHMQSG 408
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 64/101 (63%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + +E+ E+ + L+ RD +G + + L +N M L+GSKGSFINISQ
Sbjct: 695 RLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQ 754
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ ACVGQQ + GKR+P GF R+LPHF K S+G V+
Sbjct: 755 VTACVGQQNVEGKRIPFGFSQRTLPHFVKDDYTGKSRGFVE 795
>gi|375083052|ref|ZP_09730090.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
gi|374742288|gb|EHR78688.1| DNA-directed RNA polymerase subunit A' [Thermococcus litoralis DSM
5473]
Length = 905
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H + ++ETSGIP K KS + L QRLKGK+GRFR NLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYFDNETSGIP---PAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E L++++LNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPLVVAMELTVPEKVTEFNIEKLRKMILNGPEKYPG 380
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/119 (40%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ +R ++ E K + I A ++G L+ PG + EETLE+ I+ LS RD+
Sbjct: 676 PDEAKARIR---EIIMEAEDKVQRLIEAYKNGELEPLPGKTLEETLESKIMAVLSEARDN 732
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK + L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ NR L HF
Sbjct: 733 AGKVAEKYLGMNNHTVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRNRVLSHF 791
>gi|307595331|ref|YP_003901648.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
gi|307550532|gb|ADN50597.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta distributa DSM
14429]
Length = 891
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIP-LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ + W+ LQ H A + N+E +P + + + L QRLKGK+GRFRG+LSGKRVDF
Sbjct: 276 VVDQLWDLLQYHVATYFNNELPNLPPVKHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVDF 335
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDPNL I +VG+P VAKILT P V N E +QLVLNGP+ PG
Sbjct: 336 SSRTVISPDPNLSINEVGVPIDVAKILTVPMTVTEWNIEMARQLVLNGPEVWPG 389
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 71/122 (58%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+L E K YI+ G+L+ +PG + EETLE I ELS +R+ A + + ++
Sbjct: 675 EKLYEESERKVFDYIQRFREGKLEAEPGLTVEETLENDITIELSRVREAAARVAEKYINK 734
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
+MA +G++GS +NI+QM+A +GQQ I G+R GF R+ HF+ P +KG
Sbjct: 735 DGEAYIMAKTGARGSIVNITQMVAMIGQQTIRGERFKRGFTGRTTAHFEPGDLGPMAKGF 794
Query: 239 VK 240
V+
Sbjct: 795 VR 796
>gi|83320430|gb|ABC02842.1| RNA polymerase II largest subunit, partial [Cladochytrium
replicatum]
Length = 981
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A ++N+E SG+P Q + + + RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 202 LQYHVATYMNNELSGVPTATQKSGRPIKSIRDRLKGKEGRLRGNLMGKRVDFSARTVITG 261
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPN+ I QVG+P +A+ LT+PE V AN+E L+QLV NGP +HPG
Sbjct: 262 DPNISIDQVGVPRSIARNLTFPETVTAANQERLQQLVRNGPTEHPG 307
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ E I ++G LQ +PG + E+ E+++ EL R+ G L N M +
Sbjct: 598 EVEKIIATAQAGTLQRKPGMTVRESFESLVNYELGRARERTGARSTNSLREQNNFKQMVV 657
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS INISQ++ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 658 AGSKGSNINISQIMACVGQQNVEGKRIPFGFKGRTLPHFKKDDHSPQSRGFVENSYLR 715
Score = 38.9 bits (89), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KP LWTGKQ SL+L
Sbjct: 464 VVPMPAILKPVPLWTGKQAISLVL 487
>gi|384246317|gb|EIE19808.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coccomyxa subellipsoidea C-169]
Length = 1328
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 59/110 (53%), Positives = 73/110 (66%), Gaps = 20/110 (18%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
+ W++LQ++CA+ G +QRLKGKQGRFRGNLSGKRVDF+ RT
Sbjct: 279 DSWDFLQVNCAM--------------------GFVQRLKGKQGRFRGNLSGKRVDFSGRT 318
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL I +VGIP HVA ILT+PERV N L++ ++NGP PG
Sbjct: 319 VISPDPNLAINEVGIPMHVAVILTFPERVTSHNISRLQKCIMNGPGVWPG 368
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/126 (42%), Positives = 82/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ K+ + Y +C+ I +SG+L GC+ E++LE ++ L+ IR+ A C+
Sbjct: 657 LLQEKQATIDSSYQECQDKIAEYKSGKLALLAGCNEEQSLEQSVMGVLNRIRNTASDVCM 716
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL+M+ GSKGS INI+QM+ACVGQQ+++G+R P+GF +R+LPHF + P
Sbjct: 717 KTLQHHNSPLIMSQCGSKGSPINIAQMVACVGQQSVSGRRCPDGFKDRTLPHFPPGDRTP 776
Query: 234 ASKGNV 239
KG V
Sbjct: 777 EGKGFV 782
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMV-KDQF 361
+V +P PA++KP LWTGKQ+FS++++PN + NL+T + Y +M +D F
Sbjct: 528 AVDLPQPALLKPLELWTGKQLFSMLIRPNSLTRLLVNLETAEKTYLKGSGVMCPRDGF 585
>gi|363755924|ref|XP_003648178.1| hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891378|gb|AET41361.1| Hypothetical protein Ecym_8065 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1743
Score = 122 bits (305), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 DNGDRIDLRYSKRAGDIQ 425
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
+ ++ L + G + E+ E +++ L+ RD AG++ L N M +GSKGS
Sbjct: 695 KEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVSAGSKGS 754
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
FINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 755 FINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
>gi|325960115|ref|YP_004291581.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
gi|325331547|gb|ADZ10609.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp. AL-21]
Length = 871
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 90/143 (62%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+PE +A +T P V N E +K+ ++NGP KHPG ++R
Sbjct: 317 SARTVISPDPNISINEVGVPEMIATEVTVPVFVTEWNIEKMKEYIMNGPKKHPGANYVIR 376
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+R + E I +E G
Sbjct: 377 PDDRKIRVYDETKETVIEKLEPG 399
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+LL+ + E I A + L+ PG S ETLE I++ L RD +G+
Sbjct: 650 EQLLANAEQRVEQLIDAYHNEELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGM 709
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+ R+LPHF
Sbjct: 710 ENHAVIMALTGARGSMLNLTQIAACVGQQSVRGGRIERGYSKRTLPHF 757
>gi|50310581|ref|XP_455310.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644446|emb|CAG98018.1| KLLA0F05071p [Kluyveromyces lactis]
Length = 1720
Score = 122 bits (305), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 ESGDRIDLRYSKRAGDIQ 425
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 689 KVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
>gi|374107397|gb|AEY96305.1| FADR086Cp [Ashbya gossypii FDAG1]
Length = 1738
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 DNGDRIDLRYSKRAGDIQ 425
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 689 KVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
>gi|302307500|ref|NP_984182.2| ADR086Cp [Ashbya gossypii ATCC 10895]
gi|442570012|sp|Q75A34.2|RPB1_ASHGO RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|299789031|gb|AAS52006.2| ADR086Cp [Ashbya gossypii ATCC 10895]
Length = 1745
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 DNGDRIDLRYSKRAGDIQ 425
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 689 KVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
>gi|242398380|ref|YP_002993804.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
gi|242264773|gb|ACS89455.1| DNA-directed RNA polymerase subunit alpha [Thermococcus sibiricus
MM 739]
Length = 905
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 62/117 (52%), Positives = 84/117 (71%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H + ++ETSGIP K KS + L QRLKGK+GRFR NLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYFDNETSGIP---PAKHKSGRPLKTLAQRLKGKEGRFRKNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P VA LT PE+V N E L++++LNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPLIVAMELTVPEKVTDFNLEKLRKMILNGPEKYPG 380
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 78/129 (60%), Gaps = 1/129 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +A+ + ++ E K + I A ++G L+ PG + EETLE+ I+ LS RD+AGK
Sbjct: 676 PGEAKARIKEIIMEAEGKVQRLIEAYKNGELEPLPGKTLEETLESRIMAVLSEARDNAGK 735
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+ L +N ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ +R L HF
Sbjct: 736 VAERYLGMNNHTVIMAKTGARGKILNITQMAAILGQQSIRGKRLYRGYRSRVLSHFKAGD 795
Query: 231 KDPASKGNV 239
+KG +
Sbjct: 796 LGARAKGFI 804
>gi|167044066|gb|ABZ08751.1| putative RNA polymerase Rpb1, domain 2, partial [uncultured marine
crenarchaeote HF4000_APKG4H17]
Length = 993
Score = 121 bits (304), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 7/110 (6%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
LQ H + ++E SGIP Q +S + L QRLKGK+GRFRG+LSGKRVDF+SRTV
Sbjct: 1 LQYHTTTYFDNEVSGIP---QAHHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVDFSSRTV 57
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
ISPDPNL + +VG+P VA LT PE V N E LK+LV+NGPD PG+
Sbjct: 58 ISPDPNLDLGEVGVPVQVATKLTIPEIVTEWNIEKLKKLVINGPDTFPGV 107
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 64/119 (53%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
L E Y K I G L+ G + ET EA+I EL+ RD AG L N
Sbjct: 391 LQETYDKVADIISQKNKGTLKGLRGLTVAETAEALITYELARARDRAGITANSNLADDNA 450
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +N+ QM +GQQ+ GKR+ G+ NR+LPHF + +P S G VK
Sbjct: 451 GKIMATTGARGSALNVGQMAGALGQQSRRGKRLHTGYGNRTLPHFKEHDDNPDSHGFVK 509
>gi|401881990|gb|EJT46265.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 2479]
Length = 1787
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A LTYPERV N +L+QL+ NGP +PG
Sbjct: 354 SARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPG 407
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+ A L E + +I E+ +++ +PG + ETLEA + EL+ RD AGK
Sbjct: 683 MAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSGELNKARDWAGKTAQD 742
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +SG+KGSFINISQM CVGQQ + GKR+P GF +R+LPHF K P
Sbjct: 743 NLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVEGKRIPFGFRHRTLPHFSKDDYGPE 802
Query: 235 SKGNVK--FLR 243
S+G V+ +LR
Sbjct: 803 SRGFVENSYLR 813
Score = 40.0 bits (92), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI+KP+ +WTGKQ+ S+ +
Sbjct: 566 IPPPAILKPRPMWTGKQLVSMCI 588
>gi|255719376|ref|XP_002555968.1| KLTH0H02046p [Lachancea thermotolerans]
gi|238941934|emb|CAR30106.1| KLTH0H02046p [Lachancea thermotolerans CBS 6340]
Length = 1740
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 DNGDRIDLRYSKRAGDIQ 425
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 689 KVEEVTKEAQANLLTAKHGMTLRESFEDSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
>gi|406700979|gb|EKD04138.1| DNA-directed RNA polymerase ii largest subunit [Trichosporon asahii
var. asahii CBS 8904]
Length = 1771
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A LTYPERV N +L+QL+ NGP +PG
Sbjct: 354 SARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNINYLQQLINNGPATYPG 407
Score = 107 bits (268), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 57/131 (43%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+ A L E + +I E+ +++ +PG + ETLEA + EL+ RD AGK
Sbjct: 683 MAAVNNRLVEAKDTVQAFISEAENNKMKPRPGMTIRETLEAAVSGELNKARDWAGKTAQD 742
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +SG+KGSFINISQM CVGQQ + GKR+P GF +R+LPHF K P
Sbjct: 743 NLKADNNVKQMVVSGAKGSFINISQMSGCVGQQIVEGKRIPFGFRHRTLPHFSKDDYGPE 802
Query: 235 SKGNVK--FLR 243
S+G V+ +LR
Sbjct: 803 SRGFVENSYLR 813
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI+KP+ +WTGKQ+ S+ +
Sbjct: 566 IPPPAILKPRPMWTGKQLVSMCI 588
>gi|397135846|gb|AFO11418.1| RNA polymerase I, partial [Kluyveromyces marxianus]
Length = 871
Score = 121 bits (304), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 221 ENGDRIDLRYSKRAGDIQ 238
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 KVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 619
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
IIP PAI+KPK LW+GKQI S+ + PN
Sbjct: 372 IIPTPAILKPKPLWSGKQILSMAI-PN 397
>gi|83320454|gb|ABC02854.1| RNA polymerase II largest subunit, partial [Spiromyces aspiralis]
Length = 1022
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I ED+E LQ H F+N+E SG+P +Q + R + RLKGK+GR RGNL GKRVDF
Sbjct: 230 IIEDFESLLQFHVVTFMNNEISGLPQALQKSGRPIRSIRARLKGKEGRLRGNLMGKRVDF 289
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ I +VG+P +A+ LTYPE V N E L++LV NGP +HPG
Sbjct: 290 SARTVITGDPNISIDEVGVPRSIARNLTYPEVVTPYNIEKLQELVRNGPTEHPG 343
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 76/125 (60%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E Y + + I + R++ PG + E+ E + KEL+ RD AGK Q L SN
Sbjct: 629 IIKEAYDRVDQIIIDAQEDRMEAMPGMTYRESFENRVNKELNRARDQAGKLVQQRLKESN 688
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M ++GSKGS+IN+SQM A VGQQ + GKR+P GF R+LPHF K PASKG V+
Sbjct: 689 NVRQMVVAGSKGSYINVSQMTAAVGQQNVEGKRIPFGFRYRTLPHFAKDDYSPASKGFVE 748
Query: 241 --FLR 243
+LR
Sbjct: 749 NSYLR 753
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ +++ L ++ + +P PAI+KPK LWTGKQI+SL + +C
Sbjct: 475 KFTRRDNFMAKDLVMNILMHIPDWDGTVPTPAIIKPKPLWTGKQIYSLAIPKGINC 530
>gi|340056888|emb|CCC51227.1| DNA-directed RNA polymerase iii largest subunit [Trypanosoma vivax
Y486]
Length = 1533
Score = 121 bits (303), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 61/125 (48%), Positives = 82/125 (65%), Gaps = 3/125 (2%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSALPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLS 123
VISPDPNL + ++ +P VA++LTYP+RV+ N E +++LV NGP HPG + L
Sbjct: 371 VISPDPNLDVDELAVPLRVARVLTYPQRVYKCNHELMRRLVRNGPYVHPGAVTVY--LAQ 428
Query: 124 EGYSK 128
EG SK
Sbjct: 429 EGSSK 433
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH 177
K +L + KC I + +SG ++ PG + ++LE + ELS +RD G A +Q L
Sbjct: 714 KSAVLKRSFEKCNQLIESAKSGLMEPLPGLTVRQSLETRLNAELSKVRDECGTAAVQTLS 773
Query: 178 -PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASK 236
+N PL+M SGSKGS +NI+QM+ACVGQQ +NGKR+ N F +RSLPHF +F + P+++
Sbjct: 774 VDTNIPLIMVNSGSKGSALNIAQMMACVGQQTVNGKRILNAFQDRSLPHFHRFEEAPSAR 833
Query: 237 GNV 239
G V
Sbjct: 834 GFV 836
Score = 46.2 bits (108), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 38/63 (60%), Gaps = 7/63 (11%)
Query: 288 WLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGR 347
++S L S +FR +P PAI+KP LWTGKQ+F LI++P+ + V +L+ +
Sbjct: 571 FVSHWLGSGEQFR-------LPVPAILKPVELWTGKQLFELIIRPSPEVGVLLSLEAPTK 623
Query: 348 AYT 350
Y+
Sbjct: 624 FYS 626
>gi|397135848|gb|AFO11419.1| RNA polymerase I, partial [Eremothecium cymbalariae]
Length = 871
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 221 DNGDRIDLRYSKRAGDIQ 238
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/118 (39%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ + + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 RVQEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRSAELNLRDLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 619
>gi|397135844|gb|AFO11417.1| RNA polymerase I, partial [Lachancea thermotolerans]
Length = 871
Score = 121 bits (303), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 64/138 (46%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VIQESEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYIIR 220
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 221 DNGDRIDLRYSKRAGDIQ 238
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 KVEEVTKEAQANLLTAKHGMTLRESFEDSVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 619
>gi|401825605|ref|XP_003886897.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
gi|392998054|gb|AFM97916.1| RNA polymerase II large subunit Rpb1 [Encephalitozoon hellem ATCC
50504]
Length = 1557
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 67/150 (44%), Positives = 97/150 (64%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A I+++ G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPNL + +VG+P VAKI T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNLSLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + ++K EGY+ R M++G
Sbjct: 379 SDGQKIDLNFNKSDIKLEEGYVVERHMQTG 408
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + +E+ E+ + L+ RD +G + + L +N M L+GSKGSFINISQ
Sbjct: 695 RLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQ 754
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ ACVGQQ + GKR+P GF +R+LPHF K S+G V+
Sbjct: 755 VTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVE 795
>gi|83320472|gb|ABC02863.1| RNA polymerase II largest subunit, partial [Monoblepharella sp.
M15]
Length = 547
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 56/118 (47%), Positives = 86/118 (72%), Gaps = 1/118 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E W+ +Q H A ++++ SG+P+ Q + +G+ QRLKGK+GR RGNL GKRVDF
Sbjct: 17 VIEELWDLVQYHVATMMDNQISGMPVAQQKGGRPIKGIRQRLKGKEGRLRGNLMGKRVDF 76
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
++RTVI+ DPN+ I +VG+P +A+ LT+PE V+ N+E L++LV NG +++PG R
Sbjct: 77 SARTVITGDPNISIDEVGVPRSIARNLTFPEIVNDYNRERLQRLVANGYNEYPGANRV 134
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++ L +PG + ET E+ + K L+ RD AGK + L N M +SGSKG
Sbjct: 427 IKTAQANELDAEPGMTVRETFESKVNKVLNKARDDAGKKAEKSLKNYNNVKQMVISGSKG 486
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 487 SFINISQMTACVGQQNVEGKRIPYGFRYRTLPHFTKDDHSPESRGFVENSYLR 539
>gi|207347072|gb|EDZ73379.1| YDL140Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 1578
Score = 121 bits (303), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 134 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 193
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 194 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 253
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 254 SGDRIDLRYSKRAGDIQ 270
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 503 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 557
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 558 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 617
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 618 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 651
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 404 VIPTPAIIKPKPLWSGKQILSVAI-PN 429
>gi|4398|emb|CAA26904.1| put. RNA polymerase II largest subunit [Saccharomyces cerevisiae]
Length = 1726
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|190405143|gb|EDV08410.1| RNA polymerase II core subunit [Saccharomyces cerevisiae RM11-1a]
Length = 1733
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|357380836|pdb|4A3C|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid
gi|359546290|pdb|4A3B|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid
gi|359546308|pdb|4A3D|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid
gi|359546325|pdb|4A3E|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 5nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546342|pdb|4A3F|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 6nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546359|pdb|4A3J|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid And Soaked With Gmpcpp
gi|359546376|pdb|4A3K|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid
gi|359546392|pdb|4A3L|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 7nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|359546409|pdb|4A3M|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 4nt
Dna-Rna Hybrid And Soaked With Ampcpp
gi|374977879|pdb|4A3G|A Chain A, Rna Polymerase Ii Initial Transcribing Complex With A 2nt
Dna-Rna Hybrid
gi|374977894|pdb|4A3I|A Chain A, Rna Polymerase Ii Binary Complex With Dna
gi|380764979|pdb|4A93|A Chain A, Rna Polymerase Ii Elongation Complex Containing A Cpd
Lesion
Length = 1732
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|259145103|emb|CAY78367.1| Rpo21p [Saccharomyces cerevisiae EC1118]
Length = 1733
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 52/154 (33%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ + N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNMKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LW+GKQI S+ +
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI 582
>gi|366998165|ref|XP_003683819.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
gi|357522114|emb|CCE61385.1| hypothetical protein TPHA_0A03070 [Tetrapisispora phaffii CBS 4417]
Length = 1719
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHIATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
G ++ +++ K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 674 GTMKEITETIADAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLA 733
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K
Sbjct: 734 EVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYS 793
Query: 233 PASKGNVK--FLR 243
P SKG V+ +LR
Sbjct: 794 PESKGFVENSYLR 806
>gi|6320061|ref|NP_010141.1| Rpo21p [Saccharomyces cerevisiae S288c]
gi|2507347|sp|P04050.2|RPB1_YEAST RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit; AltName: Full=RNA polymerase II
subunit B220
gi|14278324|pdb|1I3Q|A Chain A, Rna Polymerase Ii Crystal Form I At 3.1 A Resolution
gi|14278335|pdb|1I50|A Chain A, Rna Polymerase Ii Crystal Form Ii At 2.8 A Resolution
gi|14278365|pdb|1I6H|A Chain A, Rna Polymerase Ii Elongation Complex
gi|20150713|pdb|1K83|A Chain A, Crystal Structure Of Yeast Rna Polymerase Ii Complexed
With The Inhibitor Alpha Amanitin
gi|30749616|pdb|1NIK|A Chain A, Wild Type Rna Polymerase Ii
gi|30749737|pdb|1NT9|A Chain A, Complete 12-Subunit Rna Polymerase Ii
gi|34810553|pdb|1PQV|A Chain A, Rna Polymerase Ii-Tfiis Complex
gi|46015415|pdb|1R5U|A Chain A, Rna Polymerase Ii Tfiib Complex
gi|46015780|pdb|1SFO|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex
gi|56965911|pdb|1R9S|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Matched Nucleotide
gi|56965923|pdb|1R9T|A Chain A, Rna Polymerase Ii Strand Separated Elongation Complex,
Mismatched Nucleotide
gi|56966107|pdb|1TWA|A Chain A, Rna Polymerase Ii Complexed With Atp
gi|56966121|pdb|1TWC|A Chain A, Rna Polymerase Ii Complexed With Gtp
gi|56966131|pdb|1TWF|A Chain A, Rna Polymerase Ii Complexed With Utp At 2.3 A Resolution
gi|56966141|pdb|1TWG|A Chain A, Rna Polymerase Ii Complexed With Ctp
gi|56966151|pdb|1TWH|A Chain A, Rna Polymerase Ii Complexed With 2'datp
gi|58177164|pdb|1WCM|A Chain A, Complete 12-Subunit Rna Polymerase Ii At 3.8 Ang
gi|61679444|pdb|1Y1W|A Chain A, Complete Rna Polymerase Ii Elongation Complex
gi|61679461|pdb|1Y77|A Chain A, Complete Rna Polymerase Ii Elongation Complex With
Substrate Analogue Gmpcpp
gi|61679502|pdb|1Y1V|A Chain A, Refined Rna Polymerase Ii-tfiis Complex
gi|61679515|pdb|1Y1Y|A Chain A, Rna Polymerase Ii-Tfiis-DnaRNA COMPLEX
gi|83754243|pdb|2B63|A Chain A, Complete Rna Polymerase Ii-Rna Inhibitor Complex
gi|110590854|pdb|2B8K|A Chain A, 12-Subunit Rna Polymerase Ii
gi|122920061|pdb|2E2H|A Chain A, Rna Polymerase Ii Elongation Complex At 5 Mm Mg2+ With Gtp
gi|122920076|pdb|2E2I|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dgtp
gi|122920091|pdb|2E2J|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With
Gmpcpp
gi|122921030|pdb|2NVQ|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
2'dutp
gi|122921066|pdb|2NVT|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Gmpcpp
gi|122921082|pdb|2NVX|A Chain A, Rna Polymerase Ii Elongation Complex In 5 Mm Mg+2 With 2'-
Dutp
gi|122921097|pdb|2NVY|A Chain A, Rna Polymerase Ii Form Ii In 150 Mm Mn+2
gi|122921109|pdb|2NVZ|A Chain A, Rna Polymerase Ii Elongation Complex With Utp, Updated
112006
gi|134104674|pdb|2JA5|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
A
gi|134104689|pdb|2JA6|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
B
gi|134104710|pdb|2JA7|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104722|pdb|2JA7|M Chain M, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
C
gi|134104734|pdb|2JA8|A Chain A, Cpd Lesion Containing Rna Polymerase Ii Elongation Complex
D
gi|146387184|pdb|2YU9|A Chain A, Rna Polymerase Ii Elongation Complex In 150 Mm Mg+2 With
Utp
gi|160877773|pdb|2R7Z|A Chain A, Cisplatin Lesion Containing Rna Polymerase Ii Elongation
Complex
gi|161172227|pdb|2R92|A Chain A, Elongation Complex Of Rna Polymerase Ii With Artificial
Rdrp Scaffold
gi|161172240|pdb|2R93|A Chain A, Elongation Complex Of Rna Polymerase Ii With A Hepatitis
Delta Virus-Derived Rna Stem Loop
gi|190613462|pdb|2VUM|A Chain A, Alpha-Amanitin Inhibited Complete Rna Polymerase Ii
Elongation Complex
gi|194368734|pdb|3CQZ|A Chain A, Crystal Structure Of 10 Subunit Rna Polymerase Ii In
Complex With The Inhibitor Alpha-Amanitin
gi|224983590|pdb|3FKI|A Chain A, 12-Subunit Rna Polymerase Ii Refined With Zn-Sad Data
gi|239781916|pdb|3GTG|A Chain A, Backtracked Rna Polymerase Ii Complex With 12mer Rna
gi|239781929|pdb|3GTJ|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer Rna
gi|239781942|pdb|3GTK|A Chain A, Backtracked Rna Polymerase Ii Complex With 18mer Rna
gi|239781955|pdb|3GTL|A Chain A, Backtracked Rna Polymerase Ii Complex With 13mer With G<>u
Mismatch
gi|239781968|pdb|3GTM|A Chain A, Co-Complex Of Backtracked Rna Polymerase Ii With Tfiis
gi|239781982|pdb|3GTO|A Chain A, Backtracked Rna Polymerase Ii Complex With 15mer Rna
gi|239781995|pdb|3GTP|A Chain A, Backtracked Rna Polymerase Ii Complex With 24mer Rna
gi|239782008|pdb|3GTQ|A Chain A, Backtracked Rna Polymerase Ii Complex Induced By Damage
gi|240104511|pdb|3H3V|B Chain B, Yeast Rnap Ii Containing Poly(A)-Signal Sequence In The
Active Site
gi|254839441|pdb|3HOU|A Chain A, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839456|pdb|3HOU|M Chain M, Complete Rna Polymerase Ii Elongation Complex I With A T-U
Mismatch
gi|254839471|pdb|3HOV|A Chain A, Complete Rna Polymerase Ii Elongation Complex Ii
gi|254839486|pdb|3HOW|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iii With A
T-U Mismatch And A Frayed Rna 3'-Uridine
gi|254839501|pdb|3HOX|A Chain A, Complete Rna Polymerase Ii Elongation Complex V
gi|254839516|pdb|3HOY|A Chain A, Complete Rna Polymerase Ii Elongation Complex Vi
gi|254839531|pdb|3HOZ|A Chain A, Complete Rna Polymerase Ii Elongation Complex Iv With A
T-U Mismatch And A Frayed Rna 3'-Guanine
gi|257471946|pdb|3I4M|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex D
gi|257471961|pdb|3I4N|A Chain A, 8-oxoguanine Containing Rna Polymerase Ii Elongation
Complex E
gi|266618765|pdb|3K1F|A Chain A, Crystal Structure Of Rna Polymerase Ii In Complex With
Tfiib
gi|269914552|pdb|3K7A|A Chain A, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
gi|295982475|pdb|3M3Y|A Chain A, Rna Polymerase Ii Elongation Complex C
gi|295982488|pdb|3M4O|A Chain A, Rna Polymerase Ii Elongation Complex B
gi|325053963|pdb|3PO2|A Chain A, Arrested Rna Polymerase Ii Elongation Complex
gi|325053978|pdb|3PO3|A Chain A, Arrested Rna Polymerase Ii Reactivation Intermediate
gi|326634538|pdb|3QT1|A Chain A, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
gi|343197456|pdb|3RZD|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
gi|343197468|pdb|3RZO|A Chain A, Rna Polymerase Ii Initiation Complex With A 4-Nt Rna
gi|343197480|pdb|3S14|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
gi|343197492|pdb|3S15|A Chain A, Rna Polymerase Ii Initiation Complex With A 7-Nt Rna
gi|343197504|pdb|3S16|A Chain A, Rna Polymerase Ii Initiation Complex With An 8-Nt Rna
gi|343197516|pdb|3S17|A Chain A, Rna Polymerase Ii Initiation Complex With A 9-Nt Rna
gi|343197528|pdb|3S1M|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 1)
gi|343197540|pdb|3S1N|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
(Variant 2)
gi|343197552|pdb|3S1Q|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Atp
gi|343197564|pdb|3S1R|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt 3'-Deoxy
Rna Soaked With Gtp
gi|343197576|pdb|3S2D|A Chain A, Rna Polymerase Ii Initiation Complex With A 5-Nt Rna
Containing A 5br- U
gi|343781197|pdb|3S2H|A Chain A, Rna Polymerase Ii Initiation Complex With A 6-Nt Rna
Containing A 2[prime]-Iodo Atp
gi|414145446|pdb|4BBR|A Chain A, Structure Of Rna Polymerase Ii-tfiib Complex
gi|414145459|pdb|4BBS|A Chain A, Structure Of An Initially Transcribing Rna Polymerase Ii-
Tfiib Complex
gi|1419221|emb|CAA65619.1| RPB1 [Saccharomyces cerevisiae]
gi|1431217|emb|CAA98713.1| RPO21 [Saccharomyces cerevisiae]
gi|151941861|gb|EDN60217.1| RNA polymerase [Saccharomyces cerevisiae YJM789]
gi|285810894|tpg|DAA11718.1| TPA: Rpo21p [Saccharomyces cerevisiae S288c]
gi|349576938|dbj|GAA22107.1| K7_Rpo21p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300684|gb|EIW11775.1| Rpo21p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1733
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|256273567|gb|EEU08500.1| Rpo21p [Saccharomyces cerevisiae JAY291]
Length = 1733
Score = 120 bits (302), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|397135842|gb|AFO11416.1| RNA polymerase I, partial [Vanderwaltozyma polyspora]
Length = 871
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ +N
Sbjct: 496 IAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 556 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
Score = 41.2 bits (95), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQI S+ +
Sbjct: 372 VIPQPAILKPKPLWTGKQILSIAI 395
>gi|83320478|gb|ABC02866.1| RNA polymerase II largest subunit, partial [Neocallimastix sp.
GE13]
Length = 813
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A F++++T+GIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 22 VVNEYEALLQFHVATFMDNDTAGIPQAMQKSGRPLKAIRARLKGKEGRIRGNLMGKRVDF 81
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ I QVG+P +A+ LT+PE V N + L+QLV NGP++HPG
Sbjct: 82 SARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNNGPNEHPG 135
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
+L+ QPG + ET E+++ + L+ RD AG + + L N M +SGSKGSFINISQ
Sbjct: 438 KLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQ 497
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M ACVGQQ + GKR+P GF R+LPHF K + P S+G V+ +LR
Sbjct: 498 MTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLR 543
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPP I+KP LWTGKQI SLI+
Sbjct: 292 VVPPPCILKPIPLWTGKQIMSLII 315
>gi|353251633|pdb|3J0K|A Chain A, Orientation Of Rna Polymerase Ii Within The Human
Vp16-Mediator-Pol Ii-Tfiif Assembly
Length = 1455
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>gi|297619552|ref|YP_003707657.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
gi|297378529|gb|ADI36684.1| DNA-directed RNA polymerase subunit A' [Methanococcus voltae A3]
Length = 888
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/115 (51%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIPE +AK LT PE+V N +H+K+L+ NG + HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPELIAKELTVPEKVTAHNIDHIKELLKNGSEIHPGV 378
Score = 84.7 bits (208), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 45/122 (36%), Positives = 67/122 (54%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +L+ + + E+G L PG EE+ EA I++ L RD G + L
Sbjct: 670 QNILNTAEDAVDAVVEKYETGTLDPLPGRGIEESREAYIMQILGRARDDTGAVAERYLSK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +MA +G++GS +NI+ M A VGQQ++ G RV G+ +R+LPHF K S D S G
Sbjct: 730 DNHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRDRTLPHFGKGSLDAKSHGF 789
Query: 239 VK 240
V+
Sbjct: 790 VR 791
>gi|333986472|ref|YP_004519079.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
SWAN-1]
gi|333824616|gb|AEG17278.1| DNA-directed RNA polymerase subunit A' [Methanobacterium sp.
SWAN-1]
Length = 873
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 90/143 (62%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 259 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+PE +A +T P V N + +K+ ++NGP KHPG ++R
Sbjct: 319 SARTVISPDPNISINEVGVPEMIATEVTVPVHVTDWNIDKMKEYIMNGPKKHPGANYVIR 378
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+R + E + +E G
Sbjct: 379 PDQRKIRVYDETKETIVEKLEPG 401
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E LL+ K E I A + L+ PG S ETLE I++ L RD +G+
Sbjct: 652 EELLANAEKKVENLIAAYHNEELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGM 711
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+ NR+LPHF
Sbjct: 712 DNHAVIMALTGARGSMLNLTQIAACVGQQSVRGGRIERGYSNRTLPHF 759
>gi|261403645|ref|YP_003247869.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus
vulcanius M7]
gi|261370638|gb|ACX73387.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus
vulcanius M7]
Length = 1343
Score = 120 bits (301), Expect = 1e-24, Method: Composition-based stats.
Identities = 59/141 (41%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 266 IIEDLWNLLQYHINTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L + +VG+PE +AK LT PE+V N E +++L+ NG +KHPG+
Sbjct: 326 SSRTVISPDPCLSVNEVGVPEIIAKELTVPEKVTKYNIERIRKLLRNGSEKHPGVNYVIR 385
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ ++ E ++ E +
Sbjct: 386 KMIGRDGTEQEYKVKVTEGNK 406
Score = 92.4 bits (228), Expect = 4e-16, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 72/126 (57%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L E K I + G L+ PG EE+ EA I L RD AGK +
Sbjct: 1120 LKEIEKVLDEAEEKVNEIIEKYKRGELELLPGLDLEESREAHINNVLREARDKAGKIAEK 1179
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MAL+G++G+ +N++QM AC+GQQ++ G+R+ G+ R LPHF+K
Sbjct: 1180 HLGMDNHAVIMALTGARGNILNLTQMAACLGQQSVRGRRIFRGYRGRVLPHFEKGDLGAR 1239
Query: 235 SKGNVK 240
S G V+
Sbjct: 1240 SHGFVR 1245
>gi|401626472|gb|EJS44418.1| rpo21p [Saccharomyces arboricola H-6]
Length = 1726
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPRSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 38.9 bits (89), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQ+ S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQVLSVAI-PN 584
>gi|159118719|ref|XP_001709578.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia ATCC 50803]
gi|133352|sp|P25202.1|RPC1_GIALA RecName: Full=DNA-directed RNA polymerase III subunit RPC1; Short=RNA
polymerase III subunit C1; AltName: Full=DNA-directed RNA
polymerase III largest subunit; AltName: Full=RNA
polymerase III subunit C160
gi|9364|emb|CAA42895.1| subunit A of DNA dependent RNA polymerase III [Giardia intestinalis]
gi|157437695|gb|EDO81904.1| DNA-directed RNA polymerase subunit A [Giardia lamblia ATCC 50803]
Length = 1741
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 85/126 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L KE ++ EGY K + IR ESG+L+ PG + +ETLEA + + LS +R+ + L
Sbjct: 964 VLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQILSNVRESCAQIAL 1023
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELH +N PL+M+L GSKGS INI+QMI +GQQ+ G R P+ F RS P+F +SK+P
Sbjct: 1024 KELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEP 1083
Query: 234 ASKGNV 239
+KG +
Sbjct: 1084 NAKGFI 1089
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 15/125 (12%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQP-KSKS-------RGLIQRLKGKQGRFRGNLSGKRV 57
W+ L + +L IP +QP K+K+ G+I RLKGK GRFR NLSGKRV
Sbjct: 367 WDQLNMDVSLLY---IGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGKRV 423
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
+F+ RTVISP+P L + QV IP +A+ LT+PE V N L++L+LNG +PG A
Sbjct: 424 NFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPG---A 479
Query: 118 KERLL 122
E LL
Sbjct: 480 NEVLL 484
>gi|120561203|gb|ABM26987.1| RNA polymerase II largest subunit, partial [Taphrina deformans]
Length = 1001
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 90/135 (66%), Gaps = 4/135 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E + LQ H A +++++ +G P +Q ++ + + RLKGK+GR RGNL GKRVDF
Sbjct: 211 VIKEFEDLLQYHVATYMDNDIAGQPKALQKSGRAIKSIRARLKGKEGRLRGNLMGKRVDF 270
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + +VG+P +A+ LTYPERV N L+QLV NGPD+HPG +LR
Sbjct: 271 SARTVITGDPNLSLDEVGVPRSIARTLTYPERVTPFNIHKLQQLVRNGPDEHPGAKYILR 330
Query: 117 AKERLLSEGYSKCEG 131
+ Y+K G
Sbjct: 331 DTGERIDLRYNKNAG 345
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 71/118 (60%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K +G + + +L+ +PG + E+ EA + + L+ RD GK L N M +
Sbjct: 612 KVQGIVSDAQLNKLKQEPGMTLRESFEAGVSQVLNGARDTVGKNAESSLSKQNAVKQMVI 671
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 672 AGSKGSFINISQMSACVGQQMVEGKRIPYGFKFRTLPHFTKDDYSPESRGFVENSYLR 729
Score = 44.7 bits (104), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 22/24 (91%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+PPPAI+KP+ LWTGKQI S+++
Sbjct: 482 IVPPPAILKPQQLWTGKQILSMVI 505
>gi|116874718|emb|CAJ75797.1| RNA polymerase I subunit B [Geosiphon pyriformis]
Length = 649
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ HCA ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 59 VISEFEDLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 118
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+P +A+ LTYPE V N EHL++LV NGP +HPG
Sbjct: 119 SARTVITGDPNISVDEVGVPRSIARNLTYPELVTPYNIEHLQELVRNGPTEHPG 172
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/119 (44%), Positives = 73/119 (61%), Gaps = 2/119 (1%)
Query: 127 SKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMA 186
S+ + I + L+ +PG + E+ E + +EL+ RD AG++ + L N M
Sbjct: 464 SRVQEIILKAQQDNLKCEPGMTIRESFEHHVNRELNTARDSAGRSAERSLREENNVKQMV 523
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+SGSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 524 VSGSKGSFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDHSPESRGFVENSYLR 582
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ +LS L ++ E IP P I+KP +WTGKQI SLI+ +C
Sbjct: 304 KFTKRDCFLSRDLVMNILMWVPEWDGRIPRPCIIKPIPMWTGKQILSLIIPKGINC 359
>gi|289193125|ref|YP_003459066.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
FS406-22]
gi|288939575|gb|ADC70330.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus sp.
FS406-22]
Length = 891
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 266 IIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L I +VG+PE VAK LT PE+V N E ++QL+ NG +KHPG+
Sbjct: 326 SSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIR 385
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ ++ E ++ ES +
Sbjct: 386 KMVGRDGTEQEFKVKITESNK 406
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L E K + I E G L+ PG + EE+ EA I L RD AG +
Sbjct: 668 LKEIEKVLDEAEEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAER 727
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G+ +N++QM AC+GQQ++ GKR+ G+ R LPHF+K
Sbjct: 728 YLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGAK 787
Query: 235 SKGNVK 240
S G V+
Sbjct: 788 SHGFVR 793
>gi|365981561|ref|XP_003667614.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
gi|343766380|emb|CCD22371.1| hypothetical protein NDAI_0A02130 [Naumovozyma dairenensis CBS 421]
Length = 1729
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+++ K E + +S L + G + E+ E +++ L+ RD AG+ L+ N
Sbjct: 683 IADAKRKVEDVTKEAQSNLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNN 742
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 743 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVEN 802
Query: 241 -FLR 243
+LR
Sbjct: 803 SYLR 806
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LW+GKQ+ S+ +
Sbjct: 559 VIPTPAIIKPKPLWSGKQVLSIAI 582
>gi|120561241|gb|ABM27005.1| RNA polymerase II largest subunit, partial [Neocallimastix
frontalis]
Length = 1004
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A F++++T+GIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 208 VVNEYEALLQFHVATFMDNDTAGIPQAMQKSGRPLKAIRARLKGKEGRIRGNLMGKRVDF 267
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ I QVG+P +A+ LT+PE V N + L+QLV NGP++HPG
Sbjct: 268 SARTVITGDPNISIDQVGVPRSIARNLTFPETVTPFNIDELQQLVNNGPNEHPG 321
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
+L+ QPG + ET E+++ + L+ RD AG + + L N M +SGSKGSFINISQ
Sbjct: 624 KLECQPGLTIRETFESLVNRHLNKARDSAGASAQKSLREYNNVKQMVVSGSKGSFINISQ 683
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M ACVGQQ + GKR+P GF R+LPHF K + P S+G V+ +LR
Sbjct: 684 MTACVGQQNVEGKRIPFGFKYRTLPHFTKDDQSPESRGFVENSYLR 729
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPP I+KP LWTGKQI SLI+
Sbjct: 478 VVPPPCILKPIPLWTGKQIMSLII 501
>gi|397135834|gb|AFO11412.1| RNA polymerase I, partial [Saccharomyces cerevisiae]
Length = 871
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 SGDRIDLRYSKRAGDIQ 238
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 471 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 525
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 526 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 585
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 586 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 619
Score = 39.7 bits (91), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 372 VIPTPAIIKPKPLWSGKQILSVAI-PN 397
>gi|397135826|gb|AFO11408.1| RNA polymerase I, partial [Tetrapisispora phaffii]
Length = 871
Score = 120 bits (301), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHIATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 2/133 (1%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
G ++ +++ K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 487 GTMKEITETIADAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLA 546
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+ N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K
Sbjct: 547 EVNLNDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYS 606
Query: 233 PASKGNVK--FLR 243
P SKG V+ +LR
Sbjct: 607 PESKGFVENSYLR 619
>gi|21228373|ref|NP_634295.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452210796|ref|YP_007490910.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
gi|20906843|gb|AAM31967.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Go1]
gi|452100698|gb|AGF97638.1| DNA-directed RNA polymerase subunit A' [Methanosarcina mazei Tuc01]
Length = 880
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/114 (54%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++ SGIP + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 261 IIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+P +AKILT P V N E LK V NG D HPG
Sbjct: 321 SARTVISPDPNLSINEVGVPMPIAKILTMPAVVTPRNIEQLKVYVRNGEDIHPG 374
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 64/106 (60%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L+E + I++ + L PG + +ET+E I+++L RD G + N
Sbjct: 663 VLTEAEDAVQNLIKSYINKELDPLPGRTLDETIEMSIMQKLGKARDKTGNIADSHMGLEN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+ R+LPHF
Sbjct: 723 SAVIMARSGARGSILNLTQMAACVGQQAVRGERIRRGYAGRTLPHF 768
>gi|337263122|gb|AEI69272.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
hellem]
Length = 1478
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 98/152 (64%), Gaps = 12/152 (7%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A I+++ G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P VAKI T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEVAKIHTFPEKVTSFNIDRLEKLVRTGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESGRL 141
+ + + ++K EGY+ R M++G +
Sbjct: 379 SDGQKIDLNFNKSDIKLEEGYVVERHMQTGDV 410
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + +E+ E+ + L+ RD +G + + L +N M L+GSKGSFINISQ
Sbjct: 695 RLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSGNNNMKTMVLAGSKGSFINISQ 754
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ ACVGQQ + GKR+P GF +R+LPHF K S+G V+
Sbjct: 755 VTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVE 795
>gi|366989121|ref|XP_003674328.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
gi|342300191|emb|CCC67948.1| hypothetical protein NCAS_0A13900 [Naumovozyma castellii CBS 4309]
Length = 1716
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ N
Sbjct: 683 IAEAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDLNN 742
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 743 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVEN 802
Query: 241 -FLR 243
+LR
Sbjct: 803 SYLR 806
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/21 (66%), Positives = 18/21 (85%)
Query: 307 IIPPPAIMKPKALWTGKQIFS 327
+IP PA++KPK LWTGKQ+ S
Sbjct: 559 VIPTPAVLKPKPLWTGKQVLS 579
>gi|337263096|gb|AEI69259.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae]
gi|396081019|gb|AFN82638.1| DNA-directed RNA polymerase II largest subunit [Encephalitozoon
romaleae SJ-2008]
Length = 1515
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 97/150 (64%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A I+++ G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATLIDNDIGGQPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P VAK+ T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEVAKVHTFPEKVTSFNIDKLEKLVRTGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + ++K EGYI R M++G
Sbjct: 379 SDGQKIDLNFNKSDIRLEEGYIVERHMQTG 408
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + +E+ E+ + L+ RD +G + + L +N M L+GSKGSFINISQ
Sbjct: 695 RLERLPGMTMKESFESHLNLVLNRARDVSGTSAQRSLSENNNMKTMVLAGSKGSFINISQ 754
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ ACVGQQ + GKR+P GF +R+LPHF K S+G V+
Sbjct: 755 VTACVGQQNVEGKRIPFGFSHRTLPHFVKDDYTGRSRGFVE 795
>gi|429329501|gb|AFZ81260.1| DNA-directed RNA polymerase III C1 subunit, putative [Babesia equi]
Length = 1548
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 57/112 (50%), Positives = 79/112 (70%), Gaps = 3/112 (2%)
Query: 5 DWEWLQLHCALFINSETSGIPLNMQPKSKS---RGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+W+++QLHC IN++ + + K+ + RGL QRLKGK+GRFRGNLSGKR DF+S
Sbjct: 360 NWQFMQLHCTRLINTDAPAVSQLLSTKNITKPGRGLCQRLKGKEGRFRGNLSGKRADFSS 419
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPN+ I ++ +PE +A LT+PE V+ N E L++ V+NG PG
Sbjct: 420 RTVISPDPNVGIDEIVVPEQIATKLTFPEVVNAGNIEVLRKAVINGWSVWPG 471
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/133 (46%), Positives = 83/133 (62%), Gaps = 4/133 (3%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG LL K LL +GYS+ I+ + LQ PGC+ EETLE + L +R+
Sbjct: 763 DVRPGAELLNRKSELLMDGYSRVSEAIKNFKD--LQAYPGCTREETLELQVKSVLDDLRN 820
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AGK C L N PL+M SG+KG+ INI+QM+ACVGQQ ++G+R+ NGF R+LPHF
Sbjct: 821 EAGKVCNAHLKNDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTLPHF 880
Query: 227 DKFSKDPASKGNV 239
+ +D S+G V
Sbjct: 881 NIGCRDAKSRGFV 893
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
F V IPPPAI+ P LWTGKQIF+++L+P+R V N + + R +
Sbjct: 624 FTNASIQVDIPPPAIIYPTMLWTGKQIFNVLLRPSRKSNVIVNFECREREF 674
>gi|410075914|ref|XP_003955539.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
gi|372462122|emb|CCF56404.1| hypothetical protein KAFR_0B01060 [Kazachstania africana CBS 2517]
Length = 1685
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ +N
Sbjct: 683 IAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNY 742
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 743 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVEN 802
Query: 241 -FLR 243
+LR
Sbjct: 803 SYLR 806
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/21 (80%), Positives = 18/21 (85%)
Query: 307 IIPPPAIMKPKALWTGKQIFS 327
IIP PAI+KPK LWTGKQI S
Sbjct: 559 IIPTPAILKPKPLWTGKQILS 579
>gi|296109331|ref|YP_003616280.1| DNA-directed RNA polymerase subunit A' [methanocaldococcus infernus
ME]
gi|295434145|gb|ADG13316.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus infernus
ME]
Length = 886
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ W LQ H + ++E GI P + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 261 VVEDVWSLLQYHIDTYFDNELPGISPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDP L I +VG+PE VAK LT PE+V N E +K+L+ NGP+KHPG
Sbjct: 321 SSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIEKIKELIKNGPNKHPG 374
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 76/126 (60%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
LR E++L E K + I E G L+ PG S EE+ EA I++ L RD AG+ +
Sbjct: 663 LREIEKVLDEAERKVDEIIEQYEKGELELLPGMSPEESREAHIMRVLREARDKAGEIAER 722
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G +NI+QM AC+GQQ++ GKR+ G+ +R LPHF+K
Sbjct: 723 YLGLDNHAVIMAITGARGKILNITQMAACIGQQSVRGKRIFRGYKDRVLPHFEKGDLGAR 782
Query: 235 SKGNVK 240
+ G V+
Sbjct: 783 AHGFVR 788
>gi|120561227|gb|ABM26999.1| RNA polymerase II largest subunit, partial [Catenaria anguillulae]
Length = 1020
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIP-LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
M++E + LQ HCA F+++E SG+P N + + + RLKGK+GR RGNL GKRVDF
Sbjct: 224 MMREHEDLLQFHCATFVDNEISGMPRANQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N L++ V GP++HPG
Sbjct: 284 SARTVITGDPNLSIDQVGVPRSIASNLTYPEMVTRHNVNRLQEAVERGPEEHPG 337
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+++ + + I +S +L+ Q G + ET EA + + L+ + AG A +
Sbjct: 621 KMIFDARQRVNEIIGEAQSDKLERQTGMTLRETFEANVNRTLNEAVNKAGGAAAKSFKVH 680
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M ++GSKGS INISQM ACVGQQ + GKR+P GF RSLPHF K P S+G V
Sbjct: 681 NNVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFV 740
Query: 240 K--FLR 243
+ +LR
Sbjct: 741 ENSYLR 746
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPK +WTGKQI SLI+
Sbjct: 496 MPPPAIVKPKPMWTGKQIMSLII 518
>gi|325969566|ref|YP_004245758.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
gi|323708769|gb|ADY02256.1| DNA-directed RNA polymerase subunit A' [Vulcanisaeta moutnovskia
768-28]
Length = 891
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIP-LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ + W+ LQ H A + N+E +P + + + L QRLKGK+GRFRG+LSGKRVDF
Sbjct: 276 VVDQLWDLLQYHVATYFNNELPNLPPVKHRSGRPLKTLAQRLKGKEGRFRGSLSGKRVDF 335
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVISPDPNL I +VG+P +AK LT P V N E ++QLVLNGP+ PG
Sbjct: 336 SSRTVISPDPNLSINEVGVPIDIAKTLTVPMMVTEWNLELVRQLVLNGPEVWPG 389
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 72/122 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+L E K YI+ + GRL+ +PG + +ETLE I ELS +R+ A + + ++
Sbjct: 675 EKLYEESERKVLDYIQKYKEGRLEAEPGLTIDETLENDITIELSRVREAAARVAERYINK 734
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
+MA +G++GS +NI+QM+A +GQQ I G+R GF R+ HF+ P +KG
Sbjct: 735 DGEAYIMAKTGARGSIVNITQMVAMLGQQTIRGERFKRGFAGRTTAHFEPGDLGPIAKGF 794
Query: 239 VK 240
V+
Sbjct: 795 VR 796
Score = 38.5 bits (88), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRD----CPVNANLKTKGRAYTFKFSIMV 357
I PAIM PK LWTGKQ+ S++L + + + + K YT ++ I+V
Sbjct: 549 IDEPAIMHPKELWTGKQVISMLLPKDLNWVQPTAIKESCKEPYNCYTDEYIIIV 602
>gi|162606212|ref|XP_001713621.1| RNA polymerase III largest subunit [Guillardia theta]
gi|13794541|gb|AAK39916.1|AF165818_124 RNA polymerase III largest subunit [Guillardia theta]
Length = 1289
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/119 (47%), Positives = 81/119 (68%), Gaps = 4/119 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I+E W +LQ+ C + +S+ N+ K +G+ QRLKGK GRFRG L GKRVDF++
Sbjct: 266 IKELWTFLQIECYQYFDSDFFQKKFNL----KFQGVFQRLKGKNGRFRGTLIGKRVDFSA 321
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL + Q+GIP + K L++PE+++ N E LK+ +L G D++PG++ R
Sbjct: 322 RTVISPDPNLFLSQIGIPIIICKNLSFPEKLNFYNYERLKRCILRGNDRYPGVVSVITR 380
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQ 206
+ EE L + L+ ++ G+ C+ + +N +M SGSKGS +N+ QM+ +GQ
Sbjct: 705 TFEEKLNII----LNSVKGDLGRICVTTKNIDNNSASIMVASGSKGSQLNLVQMMLTLGQ 760
Query: 207 QAINGKRVPNGFDNRSLP 224
Q I+ KR+ NGF R LP
Sbjct: 761 QMISAKRILNGFSYRILP 778
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/20 (85%), Positives = 18/20 (90%)
Query: 311 PAIMKPKALWTGKQIFSLIL 330
PAI+KPK LWTGKQIFS IL
Sbjct: 536 PAILKPKILWTGKQIFSEIL 555
>gi|403215001|emb|CCK69501.1| hypothetical protein KNAG_0C03970 [Kazachstania naganishii CBS
8797]
Length = 1721
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 288 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 347
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRE 407
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G ++
Sbjct: 408 NGDRIDLRYSKRAGDVQ 424
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ +N
Sbjct: 682 IAEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNF 741
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 742 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPESKGFVEN 801
Query: 241 -FLR 243
+LR
Sbjct: 802 SYLR 805
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LWTGKQI S+ + PN
Sbjct: 558 VIPTPAILKPKPLWTGKQILSVAI-PN 583
>gi|388580196|gb|EIM20513.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Wallemia sebi CBS 633.66]
Length = 1752
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E+ + +Q H A +++++ +GIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 299 IISENEQLVQFHVATYMDNDIAGIPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A+ LTYPERV N +L++LV NGP+++PG
Sbjct: 359 SARTVITGDPNLELDEVGVPFSIARTLTYPERVTPYNILYLQELVRNGPNEYPG 412
Score = 108 bits (269), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ + K +G I++ ES +L+ Q G + E+ EA + EL+ RD GK+ L N
Sbjct: 693 IGDAKDKVKGIIQSAESNQLEAQAGMTIRESFEASVNMELNQARDQVGKSAQHSLKDDNN 752
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ++ GKR+P GF R+LPHF K P S+G V+
Sbjct: 753 VKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPFGFKYRTLPHFTKDDFGPESRGFVEN 812
Query: 241 -FLR 243
+LR
Sbjct: 813 SYLR 816
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAIMKPK LWTGKQI SL +
Sbjct: 569 IVPTPAIMKPKPLWTGKQILSLCI 592
>gi|362412145|gb|AEW12839.1| RPB1 [Smittium simulii]
gi|362412148|gb|AEW12840.1| RPB1 [Smittium sp. TN-3-12]
Length = 419
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N E L+++V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|171186406|ref|YP_001795325.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
gi|170935618|gb|ACB40879.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum neutrophilum
V24Sta]
Length = 884
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV+F++RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
ISPDP++ I +VG+P +AKILT PERV N + L++ V+ GP+ PG
Sbjct: 336 ISPDPHISINEVGVPYDIAKILTVPERVTEWNVDVLREYVMRGPETWPG 384
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/121 (36%), Positives = 67/121 (55%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ L+ E K + I SGRL+ PG + EET E I + LS +R+ A + +
Sbjct: 670 DALVEESMKKADALIEEFRSGRLEAMPGFTVEETFENKITEILSKVREDAAVVVEKYISK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
+ +MA +G++GS +NI QM+A +GQQ I G+R+ G+ R+LPHF P + G
Sbjct: 730 NTEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGYRTRTLPHFPPGDIGPHAGGF 789
Query: 239 V 239
V
Sbjct: 790 V 790
>gi|336253135|ref|YP_004596242.1| DNA-directed RNA polymerase subunit A' [Halopiger xanaduensis SH-6]
gi|335337124|gb|AEH36363.1| DNA-directed RNA polymerase subunit A' [Halopiger xanaduensis SH-6]
Length = 975
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 330 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 389
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 390 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVANGPEAHPGANYVRR 449
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 450 PDGRRLKVTEKNCEALAEKVEAG 472
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 73/114 (64%), Gaps = 3/114 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ + + Y + + I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 711 AQERIDETIDDAYDRVQELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIAD 770
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 771 EHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 824
>gi|397135838|gb|AFO11414.1| RNA polymerase I, partial [Naumovozyma dairenensis]
Length = 871
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+++ K E + +S L + G + E+ E +++ L+ RD AG+ L+ N
Sbjct: 496 IADAKRKVEDVTKEAQSNLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEMNLNDLNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 556 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGYGFVDRTLPHFSKDDYSPESKGFVEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
Score = 38.9 bits (89), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LW+GKQ+ S+ +
Sbjct: 372 VIPTPAIIKPKPLWSGKQVLSIAI 395
>gi|50289967|ref|XP_447415.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526725|emb|CAG60352.1| unnamed protein product [Candida glabrata]
Length = 1715
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 12/153 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 VEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAE 150
+ YSK SG +Q Q G E
Sbjct: 409 NGDRIDLRYSK--------RSGDVQLQYGWKVE 433
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++E K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 676 MREISETIAEAKQKVEAVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDRAGRLAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 736 NLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LW+GKQI S+ +
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI 582
>gi|256070852|ref|XP_002571756.1| DNA-directed RNA polymerase III largest subunit [Schistosoma
mansoni]
Length = 629
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPD 68
L A INS+ SG+P +Q +RGL+QRL GK GRFRG+L GKR +FT+RTVISPD
Sbjct: 309 LHAEFARLINSQQSGLP-PVQDHKFTRGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPD 367
Query: 69 PNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSK 128
PN++I +V IP AK+LTYPERV N L+ LVL+GP+ +PG + +L E +
Sbjct: 368 PNMRIDEVCIPVRCAKLLTYPERVADVNLNFLRSLVLDGPNNYPGAMFVSYKLRGERERQ 427
Query: 129 CEG 131
E
Sbjct: 428 AEA 430
>gi|362412136|gb|AEW12836.1| RPB1 [Smittium simulii]
Length = 419
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N E L+++V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|18312086|ref|NP_558753.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum aerophilum str.
IM2]
gi|18159516|gb|AAL62935.1| DNA-directed RNA polymerase subunit A' (rpoA1) [Pyrobaculum
aerophilum str. IM2]
Length = 884
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/109 (51%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
WE LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV+F++RTV
Sbjct: 276 WELLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
ISPDP++ I +VG+P +AK+LT PERV N + L++ V+ GP+ PG
Sbjct: 336 ISPDPHISINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPESWPG 384
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 64/115 (55%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P R + ++ K + I SG L+ PG + EET E + + LS +R+ A
Sbjct: 663 PEAYREIDNIIKASLEKVDKLIDDFRSGHLEAMPGFTVEETFENKVTEILSKVREDAAVV 722
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ + ++ +MA +G++GS +NI QM+A +GQQ I G+R+ GF R+LPHF
Sbjct: 723 VEKYIDKNSEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGFRTRTLPHF 777
>gi|397135828|gb|AFO11409.1| RNA polymerase I, partial [Nakaseomyces delphensis]
Length = 871
Score = 119 bits (299), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 66/153 (43%), Positives = 94/153 (61%), Gaps = 12/153 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 VEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLSQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIRAMESGRLQTQPGCSAE 150
+ YSK SG +Q Q G E
Sbjct: 222 NGDRIDLRYSK--------RSGDVQLQYGWKVE 246
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 489 MREISETIADAKKKVEAVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 549 NLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIGFGFVDRTLPHFSKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PA++KPK LWTGKQI S+ + PN
Sbjct: 372 VIPIPAVLKPKPLWTGKQILSVAI-PN 397
>gi|120561225|gb|ABM26998.1| RNA polymerase II largest subunit, partial [Allomyces macrogynus]
Length = 1008
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 79/113 (69%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I++ + LQ H A F+++E SG+P MQ + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 213 IKDHEDLLQFHVATFVDNEISGMPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFS 272
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPNL I QVG+P +A+ LTYPE V N L++LV NGP +HPG
Sbjct: 273 ARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHNGPTQHPG 325
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
++++ + I + G+L+ G + ET EA + + L+ + AG A + S
Sbjct: 609 KIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVNRALNEAVNKAGSAAAKSFKVS 668
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +SGSKGS INISQM ACVGQQ + GKR+P GF RSLPHF K P S+G V
Sbjct: 669 NNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFV 728
Query: 240 K--FLR 243
+ +LR
Sbjct: 729 ENSYLR 734
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+PPPAIMKPK LWTGKQI SL++ P +C
Sbjct: 484 VPPPAIMKPKPLWTGKQILSLVI-PKVNC 511
>gi|3172134|gb|AAC18416.1| RNA polymerase II largest subunit [Bonnemaisonia hamifera]
Length = 1732
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 93/135 (68%), Gaps = 5/135 (3%)
Query: 2 IQEDWEWLQLHCALFINSETSGI-PLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I+E + +Q H A ++N+E GI P ++ S++ + + QR KGK+GR RGNL GKRVDF
Sbjct: 196 IREQIDLVQYHVATYMNNELPGIMPATVRGGSRAIKSIGQRFKGKEGRVRGNLMGKRVDF 255
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPNL++++VG+P +A+ LTYPE V N + +++LV NGPD++PG AK
Sbjct: 256 SARTVITPDPNLRLHEVGVPFSIARNLTYPEIVTSYNIDEMQKLVENGPDEYPG---AKY 312
Query: 120 RLLSEGYSKCEGYIR 134
+G+ Y+R
Sbjct: 313 IEREDGFKVNLAYVR 327
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 64/113 (56%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
+R + L PG E+ E + K L+ RD +G + + L SN M +GSKG
Sbjct: 606 VRKAQEKELVLLPGKGMMESFETEVNKVLNGARDKSGASAQRSLLKSNNIKRMVSAGSKG 665
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQ+ ACVGQQ + GKR+ GF R+LPHF P S+G V+ +LR
Sbjct: 666 SFINISQICACVGQQNVEGKRIAYGFHRRTLPHFVLDDLGPESRGFVENSYLR 718
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 285 RNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKP 332
R+ +L L +L + +IP PAI KP+ LWTGKQ+FSLIL P
Sbjct: 445 RDTFLERDLMMNLLMHVGDWDGVIPKPAIYKPRPLWTGKQVFSLILPP 492
>gi|83320460|gb|ABC02857.1| RNA polymerase II largest subunit, partial [Paraglomus occultum]
Length = 847
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ HCA ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 53 VISEFETLLQFHCATYMDNEMAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 112
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+P +A+ LTYPE V N +HL++LV NGP +HPG
Sbjct: 113 SARTVITGDPNISVDEVGVPRSIARNLTYPELVTRLNIDHLQELVRNGPSEHPG 166
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S S+ + I + +L+ QPG + +T E + KEL+ RD AG++ + L N
Sbjct: 454 ISNAKSRVQEIIIQAQQDKLEPQPGMTIRKTFENKVNKELNTARDAAGRSAEKSLGEYNN 513
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SGSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 514 VKQMVISGSKGSFINISQMSACVGQQNVEGKRIPFGFKYRTLPHFTKDDHSPESRGFVEN 573
Query: 241 -FLR 243
+LR
Sbjct: 574 SYLR 577
>gi|124028420|ref|YP_001013740.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
gi|123979114|gb|ABM81395.1| DNA-directed RNA polymerase subunit A' [Hyperthermus butylicus DSM
5456]
Length = 881
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E W LQ H A + ++E IP+ + +GL QRLKGK+GRFRGNLSGKRVD+
Sbjct: 263 LIDEHWTLLQYHVATYFDNELPRIPVARHRGGRPLKGLAQRLKGKEGRFRGNLSGKRVDY 322
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+P +AK LT V N E +++ VLNGPD+ PG
Sbjct: 323 SARTVISPDPNISINEVGVPIEIAKTLTVRTPVTPWNIEEMRRYVLNGPDRWPG 376
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 67/119 (56%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L E + + I G+L+ PG + EETLE IL LS R + L P N
Sbjct: 665 VLREAEERVKELIEQYRQGKLEPVPGRTLEETLELRILDALSDARKKVEDIVVNYLDPFN 724
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+MA +G++G+ +NI+QM A +GQQ++ G+R+ G+ +R LPHF PA++G V
Sbjct: 725 NVFIMARTGARGNELNITQMAALLGQQSVRGERIYRGYRDRFLPHFKPGDLGPAARGFV 783
Score = 39.3 bits (90), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 29/54 (53%), Gaps = 8/54 (14%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
IP PAI+ PK WTGKQ+ SL L P + N K K R F M +D++
Sbjct: 535 IPEPAILSPKKRWTGKQLVSLFL------PKDFNFKGKARVSAGIF--MCEDEW 580
>gi|256811204|ref|YP_003128573.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
AG86]
gi|256794404|gb|ACV25073.1| DNA-directed RNA polymerase subunit A' [Methanocaldococcus fervens
AG86]
Length = 891
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 90/141 (63%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 266 IIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 325
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L I +VG+PE VAK LT PE+V N E ++QL+ NG +KHPG+
Sbjct: 326 SSRTVISPDPCLSINEVGVPEIVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIR 385
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ + E ++ ES +
Sbjct: 386 KMIGRDGVEQEYKVKITESNK 406
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 76/126 (60%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L+E K + I E G L+ PG EE+ EA I L RD AG+ +
Sbjct: 668 LKEIEKVLNEAEEKVKEIIEKYERGELELLPGLDLEESREAYINNVLREARDKAGEIAEK 727
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G+ +N++QM AC+GQQ++ G+R+ G+ R LPHF+K S D
Sbjct: 728 YLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGRRIFRGYRGRVLPHFEKGSLDAK 787
Query: 235 SKGNVK 240
S G V+
Sbjct: 788 SHGFVR 793
>gi|444321244|ref|XP_004181278.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
gi|387514322|emb|CCH61759.1| hypothetical protein TBLA_0F02170 [Tetrapisispora blattae CBS 6284]
Length = 1726
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L LV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTHLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ +N
Sbjct: 683 IAEAKRKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLNDTNN 742
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+
Sbjct: 743 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVEN 802
Query: 241 -FLR 243
+LR
Sbjct: 803 SYLR 806
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LW+GKQI S+ +
Sbjct: 559 VIPTPAILKPKPLWSGKQILSIAI 582
>gi|397135812|gb|AFO11401.1| RNA polymerase I, partial [Ogataea minuta]
Length = 870
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 65/149 (43%), Positives = 93/149 (62%), Gaps = 12/149 (8%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF++RTVIS
Sbjct: 109 LQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 168
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRAKERLLSE 124
DPNL + QVG+P+ +AK+LTYPE V N + L +LVLNGP++HPG ++R +
Sbjct: 169 DPNLDLDQVGVPKSIAKVLTYPEIVTPYNIQKLTELVLNGPNEHPGAKYVIRDSGDRIDL 228
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETL 153
Y+K +G +Q Q G E L
Sbjct: 229 RYNK--------RAGDIQLQYGWKVERHL 249
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + I ++ L+ +PG + E+ E + K L+ RD AGK+ L SN M
Sbjct: 500 KVQEVIMDAQNNLLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVT 559
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K SKG V+ +LR
Sbjct: 560 AGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLR 617
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LW+GKQ+ S+ +
Sbjct: 372 VVPQPAILKPKPLWSGKQVLSMCI 395
>gi|109289337|gb|ABG29162.1| RNA polymerase II largest subunit, partial [Asterotremella
humicola]
Length = 418
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 224 VVNEHFDLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A LTYPERV N +L+QLV NGP +PG
Sbjct: 284 SARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTPYNIVYLQQLVNNGPAFYPG 337
>gi|389750938|gb|EIM92011.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Stereum hirsutum FP-91666 SS1]
Length = 1703
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 301 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LTYPERV N E+L++LV NGP +PG
Sbjct: 361 SARTVITGDPNLELDEVGVPKSIAMTLTYPERVTPYNIEYLQELVRNGPTTYPG 414
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E + I RL++ PG + E+ E+ + +EL++ RD +GK + L N
Sbjct: 695 ITERKQNVQQIIEDATHDRLKSMPGMTIRESFESKVERELNLARDDSGKYAQKNLKEDNN 754
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM CVGQQ++ G+R+P GF +R+LPHF K P ++G V+
Sbjct: 755 VKQMVVAGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVEN 814
Query: 241 -FLR 243
+LR
Sbjct: 815 SYLR 818
>gi|110612568|gb|ABG78257.1| RNA polymerase II largest subunit, partial [Cantharellus cibarius]
Length = 417
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 219 VISEFEQLLQFHVATYMDNDIAGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDF 278
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVI+ DPN+ + +VG+P+ VA LTYPERV N E L++LV NGP ++PG
Sbjct: 279 SSRTVITGDPNIMLDEVGVPKSVAMTLTYPERVTPYNIEQLQELVRNGPREYPG 332
>gi|362412160|gb|AEW12844.1| RPB1 [Smittium mucronatum]
Length = 421
Score = 119 bits (298), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N + L+++V NGP++HPG ++R
Sbjct: 288 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLRYSKRSGDI 364
>gi|330795314|ref|XP_003285719.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
gi|325084350|gb|EGC37780.1| hypothetical protein DICPUDRAFT_149604 [Dictyostelium purpureum]
Length = 1755
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 294 IITEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP++HPG
Sbjct: 354 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPNEHPG 407
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S ++ + I ++ + + QPG S ET E + + L+ RD AG + L +N
Sbjct: 693 ISSAKNQVKELIIKAQNKQFECQPGKSVMETFEQKVNQVLNKARDTAGSSAQNSLSEANN 752
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKRVP GF +R+LPHF K P S+G V+
Sbjct: 753 LKAMVTAGSKGSFINISQMMACVGQQNVEGKRVPFGFQSRTLPHFTKDDYGPESRGFVEN 812
Query: 241 -FLR 243
+LR
Sbjct: 813 SYLR 816
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPK LWTGKQ+FSLI+
Sbjct: 566 VPPPAILKPKQLWTGKQLFSLII 588
>gi|362412157|gb|AEW12843.1| RPB1 [Smittium mucronatum]
Length = 421
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N + L+++V NGP++HPG ++R
Sbjct: 288 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLRYSKRSGDI 364
>gi|253747557|gb|EET02185.1| DNA-directed RNA polymerase subunit A' [Giardia intestinalis ATCC
50581]
Length = 1742
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 83/126 (65%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L KE ++ EGY + + I ESG+L PG + +ETLEA + + LS +R+ + L
Sbjct: 964 VLHKKELIVQEGYERAQEKIHDYESGKLHAIPGSTVQETLEAALNQILSNVRESCAQVAL 1023
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELH +N PL+M+L GSKGS INI+QMI +GQQ+ G R P+ F RS P+F +SK+P
Sbjct: 1024 KELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSAPYFYHYSKEP 1083
Query: 234 ASKGNV 239
SKG +
Sbjct: 1084 NSKGFI 1089
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 73/125 (58%), Gaps = 15/125 (12%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQP--------KSKSRGLIQRLKGKQGRFRGNLSGKRV 57
W+ L + +L IP +QP + G+I RLKGK GRFR NLSGKRV
Sbjct: 367 WDQLNMDVSLLY---IGKIPGGVQPVKGKIDSGTKEGTGIIDRLKGKAGRFRSNLSGKRV 423
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
+F+ RTVISP+P L + QV IP +A+ LT+PE V N L++L+LNG +PG A
Sbjct: 424 NFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPG---A 479
Query: 118 KERLL 122
E LL
Sbjct: 480 NEVLL 484
>gi|71029280|ref|XP_764283.1| DNA-directed RNA polymerase III largest subunit [Theileria parva
strain Muguga]
gi|68351237|gb|EAN32000.1| DNA-directed RNA polymerase III largest subunit, putative
[Theileria parva]
Length = 1617
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 78/111 (70%), Gaps = 3/111 (2%)
Query: 6 WEWLQLHCALFINSETSGIP---LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
W+ +Q C FINS++ + L+ + RG+ QRLKGK+GRFRGNLSGKRVDF++R
Sbjct: 357 WQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSAR 416
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN+ I +V +PE +A+ LT+PERV N + LK+ +LNG PG
Sbjct: 417 TVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIDVLKKAILNGVSVWPG 467
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K++LL +GYS+ + I + LQ PGC+ E+TLE + L +R+ +GK C
Sbjct: 790 LIDKKKQLLLDGYSRVDEAISNFKF--LQPYPGCTREQTLELQVKSILDELRNESGKICT 847
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L+P N PL+M SG+KG+ INI+QM+ACVGQQ ++G+R+ NGF R+LPHF KD
Sbjct: 848 SLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDA 907
Query: 234 ASKGNV 239
S+G V
Sbjct: 908 KSRGFV 913
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + + +PPP+I+ P LWTGKQ+FS+++KPN V N++ + R YT
Sbjct: 620 FTDGTIHIDLPPPSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVREREYT 671
>gi|362412154|gb|AEW12842.1| RPB1 [Smittium orthocladii]
Length = 419
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RL+GK+GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLRGKEGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +TYPE V N E L+ +V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQAMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|353232989|emb|CCD80344.1| putative dna-directed RNA polymerase III largest subunit
[Schistosoma mansoni]
Length = 470
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 81/123 (65%), Gaps = 1/123 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPD 68
L A INS+ SG+P +Q +RGL+QRL GK GRFRG+L GKR +FT+RTVISPD
Sbjct: 309 LHAEFARLINSQQSGLP-PVQDHKFTRGLLQRLAGKHGRFRGSLLGKRTNFTARTVISPD 367
Query: 69 PNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSK 128
PN++I +V IP AK+LTYPERV N L+ LVL+GP+ +PG + +L E +
Sbjct: 368 PNMRIDEVCIPVRCAKLLTYPERVADVNLNFLRSLVLDGPNNYPGAMFVSYKLRGERERQ 427
Query: 129 CEG 131
E
Sbjct: 428 AEA 430
>gi|301090036|ref|XP_002895253.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
gi|262101000|gb|EEY59052.1| DNA-directed RNA polymerase II largest subunit [Phytophthora
infestans T30-4]
Length = 1858
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A F+N+E G+P Q K + L QRL+GK+GR RGNL GKRVDF
Sbjct: 325 IIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LT PERV N ++ QL+ NGP +HPG
Sbjct: 385 SARTVITADPNLAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPG 438
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+ G+L+TQPG + E+ E ++ L+ RD AG+ L +N SGSKGSFIN
Sbjct: 748 QKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFIN 807
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
ISQ+IACVGQQ + GKR+P GF++R+LPH+ K P S+G V+
Sbjct: 808 ISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVE 851
>gi|294917153|ref|XP_002778409.1| DNA-directed RNA polymerase III largest subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239886802|gb|EER10204.1| DNA-directed RNA polymerase III largest subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 1719
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 74/112 (66%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W+WL AL +NSE +G+ R + RLKGK+GRFRGNLSGKRV+F+
Sbjct: 276 VAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSG 335
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V IP++ A LT+PE V N + L+ V+ G + HPG
Sbjct: 336 RTVISPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPG 387
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 83/129 (64%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + K+ ++E Y+ + I G+L +PGC+AE+TLEAVI EL IR+ G
Sbjct: 675 PEIEAFKKEQVAEKYAYVDEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRNVVGDR 734
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L N P +MA GSKGS IN+SQMI C+GQQ + G+R+ NGF NR+LPHF KFSK
Sbjct: 735 LEKVLPRFNKPRIMAQCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSK 794
Query: 232 DPASKGNVK 240
P S+G V+
Sbjct: 795 TPQSRGFVE 803
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 285 RNGWLSS--VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
R+ +L+ + + ++ F + ++ +PPP IMKP LWTGKQ+ SL+L+P+ V NL
Sbjct: 527 RDTFLTKDKIANIAMYFGKAAETLELPPPTIMKPIQLWTGKQLISLMLRPSHKSTVLVNL 586
Query: 343 KTKGRAYT 350
+ + Y+
Sbjct: 587 EMAEKNYS 594
>gi|73671120|ref|YP_307135.1| DNA-directed RNA polymerase subunit A' [Methanosarcina barkeri str.
Fusaro]
gi|72398282|gb|AAZ72555.1| DNA-directed RNA polymerase, subunit A' [Methanosarcina barkeri
str. Fusaro]
Length = 880
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++ SGIP + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 261 IIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+P +A+ILT P V N E LK V NG D HPG
Sbjct: 321 SARTVISPDPNLSINEVGVPMPIARILTMPSVVTPRNIEQLKIYVRNGEDIHPG 374
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 70/120 (58%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L + + I++ ++ L+ PG + +ET+E I+++L RD G + N
Sbjct: 663 VLGKAEDAVQNLIKSYQNKELEPLPGRTLDETIEMSIMQKLGKARDETGNIADSHIGLEN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+ R+LPHF K + G VK
Sbjct: 723 SAVIMARSGARGSILNLTQMAACVGQQAVRGERIRRGYAGRTLPHFQKGDLGSDAHGFVK 782
>gi|84490160|ref|YP_448392.1| DNA-directed RNA polymerase subunit A' [Methanosphaera stadtmanae
DSM 3091]
gi|84373479|gb|ABC57749.1| RpoA1 [Methanosphaera stadtmanae DSM 3091]
Length = 873
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLAGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L I +VG+PE +AK +T P V N E +K+ + NGPD HPG
Sbjct: 317 SARTVISPDPTLSINEVGVPEMIAKEVTVPIAVTEWNMEKMKEYINNGPDVHPG 370
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R KE LL + K E I+A E L+ PG S ETLE I++ L RD+ G +
Sbjct: 649 RIKE-LLEKSDRKVEQLIQAYEDNELEALPGRSLRETLEMKIMQVLGEARDNTGVIAERY 707
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK 228
SN ++MAL+G++GS +N++Q+ CVGQQA+ G R+ G+ NR+LPHF K
Sbjct: 708 FTTSNSAVIMALTGARGSMLNLTQIATCVGQQAVRGGRINRGYINRTLPHFRK 760
>gi|294946553|ref|XP_002785113.1| DNA-directed RNA polymerase subunit A', putative [Perkinsus marinus
ATCC 50983]
gi|239898547|gb|EER16909.1| DNA-directed RNA polymerase subunit A', putative [Perkinsus marinus
ATCC 50983]
Length = 465
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/112 (49%), Positives = 74/112 (66%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E W+WL AL +NSE +G+ R + RLKGK+GRFRGNLSGKRV+F+
Sbjct: 185 VAEQWQWLSAQVALMMNSEATGLAAAAPTTKPIRSICSRLKGKEGRFRGNLSGKRVNFSG 244
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V IP++ A LT+PE V N + L+ V+ G + HPG
Sbjct: 245 RTVISPDPNLEVTEVIIPQYSAMKLTFPEVVCRTNIDMLRDRVIRGTEGHPG 296
>gi|448417596|ref|ZP_21579452.1| DNA-directed RNA polymerase subunit A' [Halosarcina pallida JCM
14848]
gi|445677550|gb|ELZ30050.1| DNA-directed RNA polymerase subunit A' [Halosarcina pallida JCM
14848]
Length = 976
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+PE VA+ +T V N E +Q V +GP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVTQRNLEQAQQFVRHGPEGHPGANYVKR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVEAG 473
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 70/122 (57%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+ L++ PG + +ETLE I+++L RD AG+
Sbjct: 717 DEAIQSAYDRVQELIDIYEADELESLPGRTVDETLEMKIMQQLGKARDSAGEIADDHFTD 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G++ R+L H+ + + G
Sbjct: 777 DNPAVVMARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQEDDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|156054160|ref|XP_001593006.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980]
gi|154703708|gb|EDO03447.1| hypothetical protein SS1G_05928 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 1746
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I +D+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 301 ILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+ DPNL + +VG+P +A+ILTYPE V N + L QLV NGPD+HPG AK
Sbjct: 361 SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKY 417
Query: 120 RLLSEG 125
+ S+G
Sbjct: 418 VIRSDG 423
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+ +++ ++ + S L++ PG + ET E+ + K L+ R+ AG L
Sbjct: 695 EKAIAKQKAEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLD 754
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 755 INNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 814
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 815 VENSYLR 821
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SLI+
Sbjct: 572 VIPQPAILKPRPRWTGKQIVSLII 595
>gi|83320438|gb|ABC02846.1| RNA polymerase II largest subunit, partial [Conidiobolus coronatus]
Length = 749
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E ++LQ H A +++++ +G+P ++Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 218 ILEEHEQYLQYHVATYMDNDIAGLPQSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 277
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A+ LTYPERV N + L++ V NGP+ HPG
Sbjct: 278 SARTVITGDPNLSIDQVGVPRSIARNLTYPERVTPYNIQRLREAVRNGPNVHPG 331
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/126 (42%), Positives = 75/126 (59%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+ +++ K +I + +L+ PG + +T E+ + + L+ RD G L S
Sbjct: 616 KTITDAKEKVAQFIETVNEDKLEIAPGMTLRKTFESQVNQVLNKARDSVGNYAQVNLSSS 675
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M ++GSKGSFINISQM ACVGQQ + G+R+P GF+NRSLPHF K P SKG V
Sbjct: 676 NNVKQMVIAGSKGSFINISQMSACVGQQNVEGQRIPFGFNNRSLPHFTKDDYSPESKGFV 735
Query: 240 K--FLR 243
+ +LR
Sbjct: 736 ENSYLR 741
Score = 42.0 bits (97), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L L +L + ++P PA++ PK LWTGKQI SLI+
Sbjct: 463 KFTQRDAFLDRALVMNLLMWVPNWNGVLPTPAVIAPKPLWTGKQIVSLII 512
>gi|83320420|gb|ABC02837.1| RNA polymerase II largest subunit, partial [Rozella allomycis]
Length = 809
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++ + G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 22 VVSEYEQLLQFHVATYMENSIPGLPKAIQKSGRPLKSISARLKGKEGRLRGNLMGKRVDF 81
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL + QVG+P +AK LTYPE V N E+L++LV NGP +HPG
Sbjct: 82 SARTVITPDPNLSLDQVGVPRTIAKTLTYPEIVTPYNIEYLQKLVNNGPTEHPG 135
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ + I+ + G L +PG + ET E+ + K L+ RD AGK+ L N M +
Sbjct: 425 EVKATIQQAQKGLLSCEPGMTLRETFESKVNKSLNKARDSAGKSAQTSLKEQNNVKQMVV 484
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS+INISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 485 AGSKGSYINISQMTACVGQQNVEGKRIPFGFRYRTLPHFTKGDYGPESRGFVENSYLR 542
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P P I+KP LW+GKQIFS+I+ +C
Sbjct: 291 LPRPCILKPVPLWSGKQIFSMIIPKGVNC 319
>gi|362412139|gb|AEW12837.1| RPB1 [Smittium simulii]
Length = 419
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RL+GK+GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLRGKEGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N E L+++V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|393247601|gb|EJD55108.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Auricularia delicata TFB-10046 SS5]
Length = 1775
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I + + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 297 VITDHEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 356
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ QVG+P +A LTYPERV N E+L+ LV NGP ++PG
Sbjct: 357 SARTVITGDPNLELDQVGVPRSIAMTLTYPERVTPYNIEYLQTLVRNGPREYPG 410
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 2/107 (1%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
RL+ +PG + ET E + +EL+ RD G++ + L N M +GSKGSFINIS
Sbjct: 708 ARLKAKPGMTIRETFEREVERELNQARDDTGQSAQKSLKDDNNVKQMVTAGSKGSFINIS 767
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
QM VGQQ++ GKR+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 768 QMSVFVGQQSVEGKRIPFGFKHRTLPHFTKDDFSPEARGFVENSYLR 814
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KPK LWTGKQI SL +
Sbjct: 568 IPTPAILKPKPLWTGKQILSLAI 590
>gi|313127540|ref|YP_004037810.1| DNA-directed RNA polymerase subunit a' [Halogeometricum borinquense
DSM 11551]
gi|448285311|ref|ZP_21476555.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
DSM 11551]
gi|312293905|gb|ADQ68365.1| DNA-directed RNA polymerase, subunit A' [Halogeometricum
borinquense DSM 11551]
gi|445576881|gb|ELY31328.1| DNA-directed RNA polymerase subunit A' [Halogeometricum borinquense
DSM 11551]
Length = 976
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+PE VA+ +T V N E +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVTERNLEQAQQYVRNGPEGHPGANYVKR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVQAG 473
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 71/122 (58%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + E I E+G L++ PG + +ETLE I+++L RD AG+
Sbjct: 717 DEAIDSAYERVEELIEIYEAGELESLPGRTVDETLEMKIMQQLGKARDSAGEIADDHFTD 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKEDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|281203888|gb|EFA78084.1| RNA polymerase II largest subunit [Polysphondylium pallidum PN500]
Length = 2159
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 294 IITEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP++HPG
Sbjct: 354 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRNGPNEHPG 407
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 55/124 (44%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++ ++ + I +S + + QPG S E+ E + + L+ RD AG + + L SN
Sbjct: 694 IANAKTQVKELIIKAQSNQFECQPGRSMLESFEKEVNRVLNTARDDAGTSAQRSLQESNN 753
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKRVP GF NR+LPHF K P S+G V+
Sbjct: 754 VKAMVNAGSKGSFINISQMMACVGQQNVEGKRVPFGFQNRTLPHFTKDDYGPESRGFVEN 813
Query: 241 -FLR 243
+LR
Sbjct: 814 SYLR 817
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%), Gaps = 1/26 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
IPPPAI KPK LWTGKQ+FSLI+ PN
Sbjct: 566 IPPPAIWKPKKLWTGKQLFSLII-PN 590
>gi|362412177|gb|AEW12849.1| RPB1 [Smittium culicis]
Length = 411
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 218 IIEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 277
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N + L+++V NGP++HPG ++R
Sbjct: 278 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIR 337
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 338 DSGERIDLRYSKRGGDI 354
>gi|401409792|ref|XP_003884344.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
gi|325118762|emb|CBZ54313.1| putative DNA-directed RNA polymerase II largest subunit [Neospora
caninum Liverpool]
Length = 1901
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L + + + IR GRL++QPG S E+ EA + KEL+ R+ +GK + L SN
Sbjct: 708 ILDQAKKEVDKLIRLAHRGRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESN 767
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ M L+GSKGS INISQ++ACVGQQ + GKR+P GF+ RSLPHF KF P S+G V+
Sbjct: 768 NIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVE 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPL-NMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H +++ G+P+ + K + + RLKGK+GR RGNL GKRVDF
Sbjct: 295 VLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDF 354
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L I VG+P+ +A LTYPE V N L+QLV GP PG
Sbjct: 355 SARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG 408
Score = 45.1 bits (105), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L+ + ++ + S ++PPPAI++P LWTGKQ+FSL+L
Sbjct: 540 KFTRRDTFLTKPMVYNILLQIPYWSGVVPPPAIVRPVPLWTGKQLFSLLL 589
>gi|82794246|ref|XP_728359.1| RNA polymerase A/beta'/A'' subunit [Plasmodium yoelii yoelii 17XNL]
gi|23484677|gb|EAA19924.1| RNA polymerase A/beta'/A'' subunit, putative [Plasmodium yoelii
yoelii]
Length = 2020
Score = 118 bits (296), Expect = 4e-24, Method: Composition-based stats.
Identities = 61/127 (48%), Positives = 79/127 (62%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K LL GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 756 LTDKKRDLLLNGYEKVNKEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCN 815
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L N PL+M SG+KG+ INI+QMIACVGQQ ++G+R+ NGF NR+LPHF+ K
Sbjct: 816 QYLPYLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFINRTLPHFNFHCKGS 875
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 876 ESRGFVQ 882
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQVTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N E LK L+ NG + PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPG 415
Score = 55.1 bits (131), Expect = 6e-05, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
F + + + +P PAI+KPK LWTGKQ+ S+++KPN++ N + K R Y+ K
Sbjct: 619 FSDAKIDIELPVPAILKPKELWTGKQLISVLIKPNKNENTIINFEMKEREYSTK 672
>gi|83320412|gb|ABC02833.1| RNA polymerase II largest subunit, partial [Allomyces arbuscula]
Length = 739
Score = 118 bits (296), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 59/113 (52%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I++ + LQ H A F+++E SG P MQ + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 209 IKDHEDLLQFHVATFVDNEISGTPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFS 268
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPNL I QVG+P +A+ LTYPE V N L++LV NGP +HPG
Sbjct: 269 ARTVITGDPNLSIDQVGVPRSIARNLTYPEIVTPYNINKLQELVHNGPTQHPG 321
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 52/126 (41%), Positives = 72/126 (57%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
++++ + I + G+L+ G + ET EA + + L+ + AG A + S
Sbjct: 605 KIIASARDTVKQTIHTAQRGQLKAMTGMTLRETFEAQVNRALNEAVNKAGSAAAKSFKVS 664
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +SGSKGS INISQM ACVGQQ + GKR+P GF RSLPHF K P S+G V
Sbjct: 665 NNVKQMVVSGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFV 724
Query: 240 K--FLR 243
+ +LR
Sbjct: 725 ENSYLR 730
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+PPPAIMKPK LWTGKQI SL++ P +C
Sbjct: 480 VPPPAIMKPKPLWTGKQILSLVI-PKVNC 507
>gi|83320432|gb|ABC02843.1| RNA polymerase II largest subunit, partial [Dimargaris
bacillispora]
Length = 753
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I +D + L+ H A ++N++ SGIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 222 IIDQDVQLLEYHIATYMNNDVSGIPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 281
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I +VG+P +A+ LTYPE V N L+Q V NGP +HPG ++R
Sbjct: 282 SARTVITGDPNLSIDEVGVPRSIARNLTYPELVTPYNIHQLQQAVRNGPTQHPGAKYIVR 341
Query: 117 AKERLLSEGYSKCEGYI 133
+ Y+K G I
Sbjct: 342 DNGDRIDLRYNKLGGEI 358
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ G + E+ E+ + EL+ RD AGK+ + L N M +SGSKG
Sbjct: 633 IMTAQKDELECLAGMTLRESFESKVNVELNKARDDAGKSAQKNLKEDNNVRQMVVSGSKG 692
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
S+IN+SQM ACVGQQ + GKR+P F NR+LPH+ K P S+G V+ +LR
Sbjct: 693 SYINVSQMTACVGQQNVEGKRIPFCFKNRTLPHYAKDDYGPESRGFVENSYLR 745
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
IP P I+KPK LWTGKQIFS+I+ +C
Sbjct: 494 IPQPCILKPKPLWTGKQIFSMIIPSGINC 522
>gi|119872216|ref|YP_930223.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum islandicum DSM
4184]
gi|119673624|gb|ABL87880.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum islandicum DSM
4184]
Length = 884
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 79/109 (72%), Gaps = 1/109 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV+F++RTV
Sbjct: 276 WDLLQYHIATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
ISPDP++ I +VG+P VAKILT PERV N + L++ V+ GP+ PG
Sbjct: 336 ISPDPHISINEVGVPYDVAKILTVPERVTPWNVDILREYVIRGPETWPG 384
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/120 (35%), Positives = 63/120 (52%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E K + SGRL+ PG + EET E I + LS +R+ A + +
Sbjct: 672 IIEESLKKAYTLVEEFRSGRLEAMPGFTVEETFENKITEILSKVREDATTVVEKYVKRDA 731
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+MA +G++GS +NI QM+A +GQQ I G+R+ G+ R LPHF P G VK
Sbjct: 732 EGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGYRTRVLPHFPAGDIGPFVGGFVK 791
>gi|154297219|ref|XP_001549037.1| hypothetical protein BC1G_12445 [Botryotinia fuckeliana B05.10]
gi|347440865|emb|CCD33786.1| similar to DNA-directed RNA polymerase ii largest subunit
[Botryotinia fuckeliana]
Length = 1742
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I +D+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 301 ILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+ DPNL + +VG+P +A+ILTYPE V N + L QLV NGPD+HPG AK
Sbjct: 361 SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKY 417
Query: 120 RLLSEG 125
+ S+G
Sbjct: 418 VIRSDG 423
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+ +++ ++ + S L++ PG + ET E+ + K L+ R+ AG L
Sbjct: 695 EKAIAKQKAEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLD 754
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 755 INNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 814
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 815 VENSYLR 821
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SLI+
Sbjct: 572 VIPQPAILKPRPRWTGKQIVSLII 595
>gi|448354757|ref|ZP_21543512.1| DNA-directed RNA polymerase subunit A' [Natrialba hulunbeirensis
JCM 10989]
gi|445637088|gb|ELY90244.1| DNA-directed RNA polymerase subunit A' [Natrialba hulunbeirensis
JCM 10989]
Length = 976
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEEARRYVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEALAEKVEAG 474
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +++ + + + + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDETLEMKIMQTLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 770 IADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|221486415|gb|EEE24676.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii GT1]
gi|221508191|gb|EEE33778.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii VEG]
Length = 1892
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L + + + IR GRL++QPG S E+ EA + KEL+ R+ +GK + L SN
Sbjct: 708 ILDQAKKEVDKLIRLAHRGRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESN 767
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ M L+GSKGS INISQ++ACVGQQ + GKR+P GF+ RSLPHF KF P S+G V+
Sbjct: 768 NIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVE 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPL-NMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H +++ G+P+ + K + + RLKGK+GR RGNL GKRVDF
Sbjct: 295 VLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDF 354
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L I VG+P+ +A LTYPE V N L+QLV GP PG
Sbjct: 355 SARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG 408
Score = 45.4 bits (106), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L+ + +L + S ++PPPAI+ P LWTGKQ+FSL+L
Sbjct: 540 KFTRRDTFLTKPMVYNLLLQIPYWSGVVPPPAILHPVPLWTGKQLFSLLL 589
>gi|328867419|gb|EGG15801.1| RNA polymerase II largest subunit [Dictyostelium fasciculatum]
Length = 1701
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 265 IITEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ GPD+HPG
Sbjct: 325 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDRMRELIRRGPDEHPG 378
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++ ++ + I +S + + QPG S E+ E + + L+ RD AG + + L SN
Sbjct: 665 ITSAKTQVKELIIKAQSNQFECQPGKSMLESFEKEVNRVLNTARDDAGTSAQKSLQESNN 724
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKR+P GF NR+LPHF K P S+G V+
Sbjct: 725 VKAMVNAGSKGSFINISQMMACVGQQNVEGKRIPFGFQNRTLPHFTKDDYGPESRGFVEN 784
Query: 241 -FLR 243
+LR
Sbjct: 785 SYLR 788
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/23 (86%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI KPK LWTGKQIFSLI+
Sbjct: 537 IPPPAIWKPKKLWTGKQIFSLII 559
>gi|399575812|ref|ZP_10769569.1| DNA-directed RNA polymerase, subunit a' [Halogranum salarium B-1]
gi|399238523|gb|EJN59450.1| DNA-directed RNA polymerase, subunit a' [Halogranum salarium B-1]
Length = 977
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 65/143 (45%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+PE VA+ +T V N E +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVTERNIEEAQQYVRNGPEGHPGANYVKR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVELG 475
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+ L++ PG + +ETLE I++ L RD AG+
Sbjct: 718 DEAIENAYERIQELISTYEADELESLPGRTVDETLEMKIMQTLGKARDSAGEIADDHFGD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N ++MA SG++GS +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 778 DNPAVIMARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEERTLSHYKKNDLSAEAHGF 837
Query: 239 VK 240
V+
Sbjct: 838 VE 839
>gi|237833803|ref|XP_002366199.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
gi|211963863|gb|EEA99058.1| DNA-directed RNA polymerase II largest subunit, putative
[Toxoplasma gondii ME49]
Length = 1892
Score = 118 bits (296), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/120 (48%), Positives = 79/120 (65%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L + + + IR GRL++QPG S E+ EA + KEL+ R+ +GK + L SN
Sbjct: 708 ILDQAKKEVDKLIRLAHRGRLESQPGKSLRESFEARVNKELNSARERSGKVAAESLDESN 767
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ M L+GSKGS INISQ++ACVGQQ + GKR+P GF+ RSLPHF KF P S+G V+
Sbjct: 768 NIMAMVLAGSKGSTINISQIMACVGQQNVEGKRIPFGFNERSLPHFHKFDYSPQSRGFVE 827
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPL-NMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H +++ G+P+ + K + + RLKGK+GR RGNL GKRVDF
Sbjct: 295 VLQEMVMLLQYHVTTLFDNDIPGMPVATTRGKKPIKSIRARLKGKEGRLRGNLMGKRVDF 354
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L I VG+P+ +A LTYPE V N L+QLV GP PG
Sbjct: 355 SARTVITGDPMLPIDTVGVPKSIAMTLTYPEFVTPLNIGQLRQLVKTGPFDWPG 408
Score = 45.4 bits (106), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L+ + +L + S ++PPPAI+ P LWTGKQ+FSL+L
Sbjct: 540 KFTRRDTFLTKPMVYNLLLQIPYWSGVVPPPAILHPVPLWTGKQLFSLLL 589
>gi|84997133|ref|XP_953288.1| DNA-directed RNA polymerase III largest subunit (RPC homologue)
[Theileria annulata strain Ankara]
gi|65304284|emb|CAI76663.1| DNA-directed RNA polymerase III largest subunit (RPC homologue),
putative [Theileria annulata]
Length = 1648
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/111 (52%), Positives = 77/111 (69%), Gaps = 3/111 (2%)
Query: 6 WEWLQLHCALFINSETSGIP---LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
W+ +Q C FINS++ + L+ + RG+ QRLKGK+GRFRGNLSGKRVDF++R
Sbjct: 365 WQIIQYQCTRFINSDSPALAQLLLSRRVSKPGRGIFQRLKGKEGRFRGNLSGKRVDFSAR 424
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVISPDPN+ I +V +PE +A+ LT+PERV N LK+ +LNG PG
Sbjct: 425 TVISPDPNVGIDEVVVPEWIARRLTFPERVTKYNIHVLKKAILNGVSVWPG 475
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/126 (46%), Positives = 83/126 (65%), Gaps = 2/126 (1%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L+ K++LL +GYS+ + I + LQ PGC+ E+TLE + L +R+ +GK C
Sbjct: 799 LIDKKKQLLLDGYSRVDEAISNFQF--LQPYPGCTREQTLELQVKSILDELRNESGKICT 856
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
L+P N PL+M SG+KG+ INI+QM+ACVGQQ ++G+R+ NGF R+LPHF KD
Sbjct: 857 SLLNPDNKPLIMFNSGAKGALINIAQMVACVGQQNVSGQRIQNGFIGRTLPHFTMGCKDA 916
Query: 234 ASKGNV 239
S+G V
Sbjct: 917 KSRGFV 922
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 34/52 (65%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
F + V +PPP+I+ P LWTGKQ+FS+++KPN V N++ + R YT
Sbjct: 628 FTDGTIQVDLPPPSIIHPVTLWTGKQVFSVLIKPNNKSKVMVNIRVREREYT 679
>gi|362412180|gb|AEW12850.1| RPB1 [Smittium culicis]
Length = 421
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRVRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N + L+++V NGP++HPG ++R
Sbjct: 288 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIDKLQEMVQNGPNEHPGAKYVIR 347
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 348 DSGERIDLRYSKRGGDI 364
>gi|164657340|ref|XP_001729796.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
gi|159103690|gb|EDP42582.1| hypothetical protein MGL_2782 [Malassezia globosa CBS 7966]
Length = 1607
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 81/108 (75%), Gaps = 1/108 (0%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
+ LQ H A +++++ +G+P ++Q + + + RLKGK+GR RGNL GKRVDF++RTVI
Sbjct: 101 DLLQYHTATYMDNDIAGLPQSLQSSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVI 160
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ DPNL++ QVG+P+ +A+ LTYPERV N+ +L LV NGP+++PG
Sbjct: 161 TGDPNLELDQVGVPKSIARNLTYPERVTPYNRAYLSDLVRNGPNEYPG 208
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+++ S I+A L+ PG + E+ EA + + L+ RD G Q L N
Sbjct: 490 IAKAKSDVMNLIQAARHDWLKADPGMTLRESFEANVNRILNKARDDVGSHAEQNLPDWNN 549
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S+G V+
Sbjct: 550 VKQMVIAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKDDYTPESRGFVEN 609
Query: 241 -FLR 243
+LR
Sbjct: 610 SYLR 613
>gi|362412142|gb|AEW12838.1| RPB1 [Smittium simulii]
Length = 419
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALQKSGRPIKSIRARLKGKGGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +T+PE V N E L+++V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTFPEVVTPYNIEKLQEMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|448307075|ref|ZP_21496976.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
gi|445596622|gb|ELY50707.1| DNA-directed RNA polymerase subunit A' [Natronorubrum bangense JCM
10635]
Length = 973
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 330 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 389
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 390 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRFVSNGPEGHPGANYVRR 449
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 450 PDGRRLKVTEKNCEQLAEKVEAG 472
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 72/114 (63%), Gaps = 3/114 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A++R+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG
Sbjct: 711 AQDRIDETIDDANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIAD 770
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 771 EHFEDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 824
>gi|13274158|emb|CAC33864.1| RNA polymerase II largest subunit [Pleistophora typicalis]
Length = 1117
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A +++ +G+P ++Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 234 IIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKSISARLKGKEGRVRGNLMGKRVDF 293
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++R+VISPD N+ + +VG+PE +AKI T+PERV NKE L+++V NGP++ PG
Sbjct: 294 SARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGFNKERLERMVRNGPNRWPG 347
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
R + E + IR GRL+ PG ET EA I + L+ RD +GK + L
Sbjct: 674 RSIKESKEEVNRLIRVAREGRLKKMPGMGLRETFEARISQTLNKARDVSGKNASESLEAE 733
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN-RSLPHFDKFSKDPASKGN 238
N +M ++GSKGS INISQ+ ACVGQQ + G R+ F N R+LPHF K S+G
Sbjct: 734 NNVRMMVMAGSKGSLINISQVTACVGQQNVEGHRIS--FSNQRTLPHFHKDDNRAESRGF 791
Query: 239 VK 240
V+
Sbjct: 792 VE 793
>gi|66815437|ref|XP_641735.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
gi|166202448|sp|P35084.2|RPB1_DICDI RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III subunit A
gi|60469758|gb|EAL67745.1| RNA polymerase II largest subunit [Dictyostelium discoideum AX4]
Length = 1727
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 293 IIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 352
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP +HPG
Sbjct: 353 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG 406
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S ++ + I ++ + + QPG S ET E + + L+ RD AG + L N
Sbjct: 692 ISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNN 751
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 752 LKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVEN 811
Query: 241 -FLR 243
+LR
Sbjct: 812 SYLR 815
Score = 47.4 bits (111), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPK LWTGKQ+FSLI+
Sbjct: 565 VPPPAILKPKQLWTGKQLFSLII 587
>gi|353235719|emb|CCA67728.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Piriformospora indica DSM 11827]
Length = 1796
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 301 IVSEYEQLLQYHVATYMDNDIAGVPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A LTYPERV N ++L +LV GP ++PG
Sbjct: 361 SARTVITGDPNLQLDQVGVPRSIAMTLTYPERVTRYNIQYLTELVRRGPQEYPG 414
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + I + RL+ +PG + E+ E+ + L+ RD AGK + L SN M +
Sbjct: 701 KVQKLIEDASNDRLKAEPGMTIRESFESHVNMHLNKARDTAGKMAQESLKDSNNVKQMVV 760
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM VGQQ++ GKR+P GF +RSLPHF K P S+G V+ +LR
Sbjct: 761 AGSKGSFINIAQMSVAVGQQSVEGKRIPFGFRHRSLPHFTKDDFSPESRGFVENSYLR 818
Score = 38.1 bits (87), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P P I+KPK LWTGKQ+ S+ +
Sbjct: 571 IVPTPTILKPKPLWTGKQLLSMCI 594
>gi|333911408|ref|YP_004485141.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
gi|333751997|gb|AEF97076.1| DNA-directed RNA polymerase subunit A' [Methanotorris igneus Kol 5]
Length = 890
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 265 IIEDLWDLLQYHVNTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VG+PE VAK LT PE+V N + +++L+ NG +KHPG+
Sbjct: 325 SARTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIDKIRELLKNGSEKHPGV 379
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 73/122 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+++L + + IR E+G L+ PG S EE+ EA I+K L RD AG + L
Sbjct: 671 QKILDKAEEEVNEIIRKYENGELEPLPGRSLEESREAYIMKILGKARDEAGAVAERYLSK 730
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +MA +G++GS +NI+ M ACVGQQ++ G+R+ G+ NR LPHF K S D S G
Sbjct: 731 DNHAALMARTGARGSLLNITMMSACVGQQSVRGQRIFRGYRNRVLPHFKKGSLDAKSHGF 790
Query: 239 VK 240
V+
Sbjct: 791 VR 792
>gi|134147421|gb|ABO63964.1| RNA polymerase II largest subunit [Pleistophora mulleri]
Length = 1063
Score = 118 bits (295), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A +++ +G+P ++Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 233 IIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKSISARLKGKEGRVRGNLMGKRVDF 292
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++R+VISPD N+ + +VG+PE +AKI T+PERV NKE L+++V NGP++ PG
Sbjct: 293 SARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGFNKERLERMVRNGPNRWPG 346
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
R + E + IR GRL+ PG ET EA I + L+ RD +GK + L
Sbjct: 668 RSIKESKEEVNRLIRVAREGRLKKMPGMGLRETFEARISQTLNKARDVSGKNASESLEAE 727
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN-RSLPHFDKFSKDPASKGN 238
N +M ++GSKGS INISQ+ ACVGQQ + G R+ F N R+LPHF K S+G
Sbjct: 728 NNVRMMVMAGSKGSLINISQVTACVGQQNVKGHRIS--FSNQRTLPHFHKDDNRAESRGF 785
Query: 239 VK 240
V+
Sbjct: 786 VE 787
>gi|120561197|gb|ABM26984.1| RNA polymerase II largest subunit, partial [Sclerotinia
sclerotiorum]
Length = 1011
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 62/126 (49%), Positives = 87/126 (69%), Gaps = 5/126 (3%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
I +D+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 217 ILQDFETLLQYHVATYMDNDIAGQPPALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 276
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+ DPNL + +VG+P +A+ILTYPE V N + L QLV NGPD+HPG AK
Sbjct: 277 SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPLNIDKLHQLVKNGPDEHPG---AKY 333
Query: 120 RLLSEG 125
+ S+G
Sbjct: 334 VIRSDG 339
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 74/127 (58%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E+ +++ ++ + S L++ PG + ET E+ + K L+ R+ AG L
Sbjct: 611 EKAIAKQKAEVTELVEKATSNELESLPGMNVRETFESQVSKALNEARNTAGTKTEDGLLD 670
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 671 INNAVQMARSGSKGSTINISQMSALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 730
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 731 VENSYLR 737
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SLI+
Sbjct: 488 VIPQPAILKPRPRWTGKQIVSLII 511
>gi|348676924|gb|EGZ16741.1| RNA polymerase II large subunit [Phytophthora sojae]
Length = 1852
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A F+N+E G+P Q K + L QRL+GK+GR RGNL GKRVDF
Sbjct: 325 IIEQFEQLLQFHLATFLNNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ I QVG+P +A LT PERV N ++ QL+ NGP +HPG
Sbjct: 385 SARTVITADPNIAIDQVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPG 438
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/104 (47%), Positives = 68/104 (65%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+ G+L+TQPG + E+ E ++ L+ RD AG+ L +N SGSKGSFIN
Sbjct: 748 QKGKLETQPGRTMVESFEGLVNIVLNTARDQAGREAQGSLDETNNIKATVTSGSKGSFIN 807
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
ISQ+IACVGQQ + GKR+P GF++R+LPH+ K P S+G V+
Sbjct: 808 ISQIIACVGQQNVEGKRIPYGFNHRTLPHYGKDDLGPESRGFVE 851
>gi|68070079|ref|XP_676951.1| DNA-directed RNA polymerase 3 largest subunit [Plasmodium berghei
strain ANKA]
gi|56496875|emb|CAI00330.1| DNA-directed RNA polymerase 3 largest subunit, putative [Plasmodium
berghei]
Length = 1490
Score = 118 bits (295), Expect = 7e-24, Method: Composition-based stats.
Identities = 61/127 (48%), Positives = 79/127 (62%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K LL GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 749 LTDKKRDLLLNGYEKVNKEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCN 808
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q L N PL+M SG+KG+ INI+QMIACVGQQ ++G+R+ NGF NR+LPHF+ K
Sbjct: 809 QYLPYLNKPLIMFNSGAKGALINIAQMIACVGQQNVSGQRIQNGFINRTLPHFNFHCKGS 868
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 869 ESRGFVQ 875
Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 77/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 305 EFLQLQVTRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 364
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N E LK L+ NG + PG
Sbjct: 365 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIEKLKMLIRNGSNVWPG 414
Score = 54.3 bits (129), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
F + + + +P PAI+KPK LWTGKQ+ S+++KPN+ N + K R Y+ K
Sbjct: 612 FSDAKIDIELPVPAILKPKELWTGKQLISVLIKPNKSENTIINFEMKEREYSTK 665
>gi|254583772|ref|XP_002497454.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
gi|238940347|emb|CAR28521.1| ZYRO0F05918p [Zygosaccharomyces rouxii]
Length = 1744
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL + QVG+P+ +AK LTYPE V N + L LV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++E K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 676 MRQITEAIAEAKVKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEV 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L+ +N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 736 NLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQ+ S+ +
Sbjct: 559 VIPTPAILKPKPLWTGKQLLSVAI 582
>gi|304315186|ref|YP_003850333.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
gi|302588645|gb|ADL59020.1| DNA-directed RNA polymerase, subunit A' [Methanothermobacter
marburgensis str. Marburg]
Length = 1152
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 539 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 598
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +A+ +T P V N + +++ + NGPD HPG
Sbjct: 599 SARTVISPDPNISINEVGVPEIIAREVTVPVYVAEWNIDRMREYIENGPDVHPG 652
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ L ++ + I A E+G L+ PG S EETLE I++ L RD +G+
Sbjct: 927 ARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAE 986
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+DNR+LPHF +
Sbjct: 987 SYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKRGELG 1046
Query: 233 PASKGNV 239
S+G V
Sbjct: 1047 AKSRGFV 1053
>gi|298674727|ref|YP_003726477.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
Z-7303]
gi|298287715|gb|ADI73681.1| DNA-directed RNA polymerase subunit A' [Methanohalobium evestigatum
Z-7303]
Length = 881
Score = 118 bits (295), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 65/144 (45%), Positives = 87/144 (60%), Gaps = 5/144 (3%)
Query: 1 MIQED-WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVD 58
+I ED WE LQ H F ++E SG+P + + L QRLKGK+GRFRG+LSGKRV+
Sbjct: 260 LILEDLWELLQYHVTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVN 319
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LL 115
F++RTVISPDPNL I +VG+P +AK +T P V N E ++Q V G D HPG ++
Sbjct: 320 FSARTVISPDPNLSINEVGLPYAIAKQMTIPVNVISRNLEKMRQYVARGNDVHPGANYVI 379
Query: 116 RAKERLLSEGYSKCEGYIRAMESG 139
RA R + C ++ G
Sbjct: 380 RADGRRIKVTDVNCTDLAEKLDIG 403
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/120 (37%), Positives = 70/120 (58%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++S + + I A E+ L+ PG + +ET+E I+++L V RD G L N
Sbjct: 663 IISNAEDEVKRLIEAYEARELEPLPGRTLDETIEMKIMQKLGVARDKTGDVAGNHLGLDN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM A VGQQA+ G+R+ G+ R+LPHF K + G VK
Sbjct: 723 SAVIMAKSGARGSMLNLTQMAASVGQQAVRGERIRRGYTGRTLPHFSKGDLGADAHGFVK 782
>gi|448336439|ref|ZP_21525538.1| DNA-directed RNA polymerase subunit A' [Natrinema pallidum DSM
3751]
gi|445629179|gb|ELY82473.1| DNA-directed RNA polymerase subunit A' [Natrinema pallidum DSM
3751]
Length = 975
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +++ + +++ + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQSRIDETIADANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 770 IADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|15679064|ref|NP_276181.1| DNA-directed RNA polymerase subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6685898|sp|O27125.1|RPOA1_METTH RecName: Full=DNA-directed RNA polymerase subunit A'
gi|2622150|gb|AAB85542.1| DNA-dependent RNA polymerase, subunit A' [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 870
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +A+ +T P V N + +++ + NGPD HPG
Sbjct: 317 SARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPG 370
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ L ++ + I A E+G L+ PG S EETLE I++ L RD +G+
Sbjct: 645 ARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAE 704
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+DNR+LPHF K
Sbjct: 705 SYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELG 764
Query: 233 PASKGNV 239
S+G V
Sbjct: 765 AKSRGFV 771
>gi|397771993|ref|YP_006539539.1| DNA-directed RNA polymerase subunit A' [Natrinema sp. J7-2]
gi|397681086|gb|AFO55463.1| DNA-directed RNA polymerase subunit A' [Natrinema sp. J7-2]
Length = 975
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +++ + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIADANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFQD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 DNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|379005505|ref|YP_005261177.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
gi|375160958|gb|AFA40570.1| DNA-directed RNA polymerase subunit A'' [Pyrobaculum oguniense TE7]
Length = 884
Score = 117 bits (294), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV+F++RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSE 124
ISPDP++ I +VG+P +AKILT PE+V N + L++ V+ GP+ PG A + E
Sbjct: 336 ISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPG---ANYVVTPE 392
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETL 153
G Y++ ++ + PG E L
Sbjct: 393 GRRIDLRYVKDRKALAERLAPGWVVERHL 421
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R E ++ + K EG I SGRL+ PG + EET E + LS +R+ A + +
Sbjct: 667 REVEEIIEQALKKVEGLIEDFTSGRLEAMPGFTVEETFENKVTDILSRVREDAAQVVEKY 726
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
+ ++ +MA +G++GS +NI QM+A +GQQ I G+R+ GF +R+LPHF S
Sbjct: 727 IDKNSEGYLMAKTGARGSLVNIVQMVATLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFS 786
Query: 236 KGNVK 240
G VK
Sbjct: 787 GGFVK 791
>gi|148642969|ref|YP_001273482.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
ATCC 35061]
gi|148551986|gb|ABQ87114.1| DNA-dependent RNA polymerase, subunit A', RpoA [Methanobrevibacter
smithii ATCC 35061]
Length = 894
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 261 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +AK +T P V+ N + ++ + NGP+ HPG
Sbjct: 321 SARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPG 374
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ L E +K + + A E+ L+ PG S EETLE I++ L RD +G+
Sbjct: 657 AQERINEHLRESENKVDKLVEAYENDYLEALPGRSLEETLEMKIMQVLGEARDVSGQIAE 716
Query: 174 QEL-HPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L N +VMA +G++ S +N++Q+ +CVGQQ++ G R+ G+ +R+LPHF K
Sbjct: 717 NYLTMEHNHSVVMARTGARASMLNLTQITSCVGQQSVRGGRIHRGYIDRTLPHFRKNELG 776
Query: 233 PASKGNV 239
+KG V
Sbjct: 777 AKAKGFV 783
>gi|448297909|ref|ZP_21487943.1| DNA-directed RNA polymerase subunit A' [Natronorubrum tibetense
GA33]
gi|445592635|gb|ELY46821.1| DNA-directed RNA polymerase subunit A' [Natronorubrum tibetense
GA33]
Length = 975
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/119 (37%), Positives = 76/119 (63%), Gaps = 5/119 (4%)
Query: 112 PGLLRAKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHA 168
PG A++R+ +++ + E I A E+G L++ PG + +ETLE I++ LS RD+A
Sbjct: 710 PG--EAQDRIDETITDANDRVEELIEAYENGELESLPGRTIDETLEMKIMQTLSRARDNA 767
Query: 169 GKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
G + N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 768 GTIADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|133402|sp|P09846.2|RPOA1_METTW RecName: Full=DNA-directed RNA polymerase subunit A'
gi|809727|emb|CAA30838.1| unnamed protein product [Methanothermobacter thermautotrophicus]
Length = 865
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTV+SPDPN+ + +VG+PE +AK +T P V N + +K+ + NGPD HPG
Sbjct: 317 SARTVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPG 370
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
AKER+ L ++ + I A E+G L+ PG S EETLE I++ L +D +G+
Sbjct: 644 AKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEAKDKSGEIAE 703
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
N ++MAL+G++G+ +N++Q+ ACVGQQ+++G R+ G+DNR+LPHF K
Sbjct: 704 SYFDMDENHAVIMALTGARGAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELG 763
Query: 233 PASKGNV 239
S+G V
Sbjct: 764 AKSRGFV 770
>gi|284163648|ref|YP_003401927.1| DNA-directed RNA polymerase subunit A' [Haloterrigena turkmenica
DSM 5511]
gi|284013303|gb|ADB59254.1| DNA-directed RNA polymerase subunit A' [Haloterrigena turkmenica
DSM 5511]
Length = 974
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVSNGPEGHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 451 PDGRRLKVTEKNCEQLAEKVEAG 473
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E+ L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 717 DETIEDANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFDD 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+++ + G
Sbjct: 777 ENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYEQNDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|222445206|ref|ZP_03607721.1| hypothetical protein METSMIALI_00829 [Methanobrevibacter smithii
DSM 2375]
gi|261350232|ref|ZP_05975649.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
gi|222434771|gb|EEE41936.1| DNA-directed RNA polymerase subunit A' [Methanobrevibacter smithii
DSM 2375]
gi|288861018|gb|EFC93316.1| DNA-directed RNA polymerase subunit A [Methanobrevibacter smithii
DSM 2374]
Length = 894
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 261 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +AK +T P V+ N + ++ + NGP+ HPG
Sbjct: 321 SARTVISPDPNISINEVGVPEMIAKEVTVPAYVNDWNMDEMRTYIENGPNVHPG 374
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 75/127 (59%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ L E +K + + A E+ L+ PG S EETLE I++ L RD +G+
Sbjct: 657 AQERINEHLRESENKVDKLVEAYENDYLEALPGRSLEETLEMKIMQVLGEARDVSGQIAE 716
Query: 174 QEL-HPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L N +VMA +G++ S +N++Q+ +CVGQQ++ G R+ G+ +R+LPHF K
Sbjct: 717 NYLTMEHNHSVVMARTGARASMLNLTQITSCVGQQSVRGGRIHRGYIDRTLPHFRKNELG 776
Query: 233 PASKGNV 239
+KG V
Sbjct: 777 AKAKGFV 783
>gi|325183802|emb|CCA18261.1| predicted protein putative [Albugo laibachii Nc14]
Length = 1819
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A FIN+E G+P Q K + L QRL+GK+GR RGNL GKRVDF
Sbjct: 294 IIEQFEQLLQFHLATFINNEQPGLPQAQQRSGKPLKTLRQRLRGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL+I QVG+P +A LT PERV N + QL+ NGP +HPG
Sbjct: 354 SARTVITADPNLEIDQVGVPLSIAMNLTVPERVTPFNMAAMHQLISNGPLEHPG 407
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/126 (40%), Positives = 77/126 (61%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ ++++ + ++ + G+L+TQPG + E+ E ++ K L+ RD AG+
Sbjct: 695 LKTIVDIITQAKVQVHDLVQRGQKGKLETQPGRTMVESFEQLVNKVLNTARDQAGREAQG 754
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L +N SGSKGSFINISQ+IACVGQQ + GKR+P GF +R+LPH+ K P
Sbjct: 755 SLDETNNIKATVTSGSKGSFINISQIIACVGQQNVEGKRIPYGFQHRTLPHYGKDDLGPE 814
Query: 235 SKGNVK 240
S+G V+
Sbjct: 815 SRGFVE 820
>gi|448347128|ref|ZP_21536007.1| DNA-directed RNA polymerase subunit A' [Natrinema altunense JCM
12890]
gi|445631465|gb|ELY84697.1| DNA-directed RNA polymerase subunit A' [Natrinema altunense JCM
12890]
Length = 975
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 68/109 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIVDANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFQD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 DNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|433592802|ref|YP_007282298.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|448335247|ref|ZP_21524397.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|433307582|gb|AGB33394.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
gi|445617628|gb|ELY71222.1| DNA-directed RNA polymerase subunit A' [Natrinema pellirubrum DSM
15624]
Length = 975
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +++ + +++ + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQSRIDETIADANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 770 IADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|145592516|ref|YP_001154518.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum arsenaticum DSM
13514]
gi|145284284|gb|ABP51866.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum arsenaticum
DSM 13514]
Length = 884
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV+F++RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSE 124
ISPDP++ I +VG+P +AKILT PE+V N + L++ V+ GP+ PG A + E
Sbjct: 336 ISPDPHISINEVGVPTDIAKILTVPEKVTAWNIDVLREYVIRGPETWPG---ANYVVTPE 392
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETL 153
G Y++ ++ + PG E L
Sbjct: 393 GRRIDLRYVKDRKALAERLAPGWVVERHL 421
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/125 (37%), Positives = 71/125 (56%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R E ++ + K EG I SGRL+ PG + EET E + LS +R+ A + +
Sbjct: 667 REVEEVIEQALKKVEGLIEDFTSGRLEAMPGFTVEETFENKVTDILSRVREDAAQVVEKY 726
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
+ ++ +MA +G++GS +NI QM+A +GQQ I G+R+ GF +R+LPHF S
Sbjct: 727 IDKNSEGYLMAKTGARGSLVNIVQMVATLGQQTIRGERIRRGFRSRTLPHFPVGDIGAFS 786
Query: 236 KGNVK 240
G VK
Sbjct: 787 GGFVK 791
>gi|448383941|ref|ZP_21562939.1| DNA-directed RNA polymerase subunit A' [Haloterrigena
thermotolerans DSM 11522]
gi|445658930|gb|ELZ11742.1| DNA-directed RNA polymerase subunit A' [Haloterrigena
thermotolerans DSM 11522]
Length = 975
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 69/109 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +++ + E I A E+ L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIADANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFQD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 DNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|116753354|ref|YP_842472.1| DNA-directed RNA polymerase subunit A' [Methanosaeta thermophila
PT]
gi|116664805|gb|ABK13832.1| DNA-directed RNA polymerase, subunit A' [Methanosaeta thermophila
PT]
Length = 876
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 64/143 (44%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++ SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 257 IIEDLWELLQYHVTTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISP PNL I +VG+P VAK LT P V N E +++ V+ GPD HPG + R
Sbjct: 317 SARTVISPYPNLSINEVGVPIEVAKELTVPIMVTPKNIEVVRKYVMRGPDNHPGVNYVTR 376
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
A R + C+ +E G
Sbjct: 377 ADGRRVKVTERNCQEVAEQLEVG 399
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 69/108 (63%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I A +G L+ PG + EETLE I++ L RD AG+ + L N +VMA+SG++G
Sbjct: 671 IEAYRAGELEPLPGRTLEETLEMRIMQTLGKARDAAGQIAGRYLGLDNSGVVMAVSGARG 730
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S +N++QM ACVGQQ++ G+R+ G+ +R+LPHF + + G V+
Sbjct: 731 SMLNLTQMAACVGQQSVRGERIKRGYTDRTLPHFKRGDLGAEAHGFVE 778
>gi|448451259|ref|ZP_21592742.1| DNA-directed RNA polymerase subunit A' [Halorubrum litoreum JCM
13561]
gi|445810693|gb|EMA60709.1| DNA-directed RNA polymerase subunit A' [Halorubrum litoreum JCM
13561]
Length = 970
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IESAYDRVQELISTYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|448513825|ref|ZP_21616756.1| DNA-directed RNA polymerase subunit A' [Halorubrum distributum JCM
9100]
gi|448526665|ref|ZP_21619934.1| DNA-directed RNA polymerase subunit A' [Halorubrum distributum JCM
10118]
gi|445692978|gb|ELZ45141.1| DNA-directed RNA polymerase subunit A' [Halorubrum distributum JCM
9100]
gi|445698892|gb|ELZ50930.1| DNA-directed RNA polymerase subunit A' [Halorubrum distributum JCM
10118]
Length = 970
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q
Sbjct: 711 DEAIESAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGD 770
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 771 DNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|397135824|gb|AFO11407.1| RNA polymerase I, partial [Cyniclomyces guttulatus]
Length = 871
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + I+ RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVXSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTKLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/123 (39%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 123 SEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGP 182
+E K E + ++ L + G + E+ E +++ L+ RD AG+ L+ +N
Sbjct: 497 AEAKKKVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEVNLNDTNFV 556
Query: 183 LVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK-- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+ G +R+ PHF K P SKG V+
Sbjct: 557 KQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGXVDRTXPHFSKDDYSPESKGFVENS 616
Query: 241 FLR 243
+LR
Sbjct: 617 YLR 619
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/21 (71%), Positives = 19/21 (90%)
Query: 307 IIPPPAIMKPKALWTGKQIFS 327
I+PPP+I+KPK LWTGKQ+ S
Sbjct: 372 IVPPPSILKPKPLWTGKQLLS 392
>gi|448427503|ref|ZP_21583818.1| DNA-directed RNA polymerase subunit A' [Halorubrum terrestre JCM
10247]
gi|445678190|gb|ELZ30684.1| DNA-directed RNA polymerase subunit A' [Halorubrum terrestre JCM
10247]
Length = 970
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q
Sbjct: 711 DEAIESAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGD 770
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 771 DNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|448303811|ref|ZP_21493757.1| DNA-directed RNA polymerase subunit A' [Natronorubrum
sulfidifaciens JCM 14089]
gi|445592438|gb|ELY46625.1| DNA-directed RNA polymerase subunit A' [Natronorubrum
sulfidifaciens JCM 14089]
Length = 973
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 330 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 389
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+ RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 390 SDRTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRFVSNGPEGHPGANYVRR 449
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 450 PDGRRLKVTEKNCEQLAEKVEAG 472
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/117 (37%), Positives = 73/117 (62%), Gaps = 1/117 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +A+ + + + + E I A E G L++ PG + +ETLE I++ LS RD+AG
Sbjct: 708 PGEAQARIDETIDDANDRVEELIEAYERGELESLPGRTLDETLEMKIMQTLSRARDNAGN 767
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 768 IADEHFEDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 824
>gi|448497568|ref|ZP_21610521.1| DNA-directed RNA polymerase subunit A' [Halorubrum coriense DSM
10284]
gi|445699799|gb|ELZ51819.1| DNA-directed RNA polymerase subunit A' [Halorubrum coriense DSM
10284]
Length = 970
Score = 117 bits (294), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q
Sbjct: 711 DEAIESAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGD 770
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 771 DNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|448482811|ref|ZP_21605582.1| DNA-directed RNA polymerase subunit A' [Halorubrum arcis JCM 13916]
gi|445821097|gb|EMA70893.1| DNA-directed RNA polymerase subunit A' [Halorubrum arcis JCM 13916]
Length = 970
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q
Sbjct: 711 DEAIESAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGD 770
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 771 DNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|397135840|gb|AFO11415.1| RNA polymerase I, partial [Kazachstania viticola]
Length = 871
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E L H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLHFHIATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIARTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E K E + +S L + G + E+ E +++ L+ RD AG+ L+ SN
Sbjct: 496 IAEAKKKVENVTKEAQSNLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEVNLNDSNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ++ GKR+P GF +R+LPHF K P SKG V+
Sbjct: 556 VKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIPYGFVDRTLPHFSKDDYSPESKGFVEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
>gi|448494509|ref|ZP_21609496.1| DNA-directed RNA polymerase subunit A' [Halorubrum californiensis
DSM 19288]
gi|445689344|gb|ELZ41584.1| DNA-directed RNA polymerase subunit A' [Halorubrum californiensis
DSM 19288]
Length = 970
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q
Sbjct: 711 DEAIQSAYDRVQELIETYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGD 770
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 771 DNPAVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|387593897|gb|EIJ88921.1| RNA polymerase 2 [Nematocida parisii ERTm3]
Length = 1284
Score = 117 bits (294), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 61/124 (49%), Positives = 78/124 (62%), Gaps = 9/124 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E+W+ LQ CA I+S++ +K R L+QRLKGK GRFRGNLSGKRV+F+
Sbjct: 294 LAENWDLLQSQCAQLISSDSR------PDAAKIRSLVQRLKGKHGRFRGNLSGKRVEFSG 347
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRAK 118
RTVISPDPNL + QVGIPE +AK LT P + NK + L NG +PG LL+
Sbjct: 348 RTVISPDPNLSVEQVGIPEEMAKTLTVPIPITEGNKNKMSALSKNGCSTYPGANYLLKQD 407
Query: 119 ERLL 122
R+
Sbjct: 408 RRIF 411
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 161 LSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN 220
LS R+ AGK C++ L P N P++M GSKGS IN+SQM+ACVGQQ + G+R+ F +
Sbjct: 702 LSRAREDAGKHCIERLSPHNSPVIMQACGSKGSLINVSQMVACVGQQVVGGQRISLDFGD 761
Query: 221 RSLPHFDKFSKDPASKGNVK 240
R+LPHF + AS+G V+
Sbjct: 762 RTLPHFQGDTN--ASRGFVR 779
>gi|378756428|gb|EHY66452.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida sp. 1
ERTm2]
Length = 1609
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A +N++ SG P ++Q + + + RL+GK+GR RGNL GKRVDF
Sbjct: 277 IIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDF 336
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+PE +AK+LT+PERV N L QLV GP HPG
Sbjct: 337 SARTVITADPNISMNEVGVPEEIAKMLTFPERVTEYNISKLSQLVQRGPYNHPG 390
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 72/128 (56%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + + + + S + I E+ L+ PG S E+ EA + L+ RD +G +
Sbjct: 664 PSSMDMIKEAIEQAKSDVKDIIVQAENNNLERLPGLSMRESFEAAVTLALNKARDTSGTS 723
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L N M +SGSKGS+INISQM ACVGQQ++ GKR+ NGF +RSLPHF K
Sbjct: 724 TQKNLRSQNNIKQMVVSGSKGSYINISQMSACVGQQSVEGKRILNGFRDRSLPHFTKDDF 783
Query: 232 DPASKGNV 239
S+G +
Sbjct: 784 TAESRGFI 791
>gi|387595902|gb|EIJ93525.1| RNA polymerase 2 [Nematocida parisii ERTm1]
Length = 1284
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/125 (49%), Positives = 80/125 (64%), Gaps = 11/125 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKS-KSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E+W+ LQ CA I+S++ +P + K R L+QRLKGK GRFRGNLSGKRV+F+
Sbjct: 294 LAENWDLLQSQCAQLISSDS-------RPDAAKIRSLVQRLKGKHGRFRGNLSGKRVEFS 346
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
RTVISPDPNL + QVGIPE +AK LT P + NK + L NG +PG LL+
Sbjct: 347 GRTVISPDPNLSVEQVGIPEEMAKTLTVPIPITEGNKNKMSALSKNGCSTYPGANYLLKQ 406
Query: 118 KERLL 122
R+
Sbjct: 407 DRRIF 411
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 161 LSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN 220
LS R+ AGK C++ L P N P++M GSKGS IN+SQM+ACVGQQ + G+R+ F +
Sbjct: 702 LSRAREDAGKHCIERLSPHNSPVIMQACGSKGSLINVSQMVACVGQQVVGGQRISLDFGD 761
Query: 221 RSLPHFDKFSKDPASKGNVK 240
R+LPHF + AS+G V+
Sbjct: 762 RTLPHFQGDTN--ASRGFVR 779
>gi|448466834|ref|ZP_21599256.1| DNA-directed RNA polymerase subunit A' [Halorubrum kocurii JCM
14978]
gi|445813260|gb|EMA63240.1| DNA-directed RNA polymerase subunit A' [Halorubrum kocurii JCM
14978]
Length = 968
Score = 117 bits (293), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/142 (44%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IESAYDRVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|308161109|gb|EFO63568.1| DNA-directed RNA polymerase subunit A' [Giardia lamblia P15]
Length = 1741
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 84/126 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L KE ++ EGY + + I ESG+L+ PG + +ETLEA + + LS +R+ + L
Sbjct: 964 VLSKKEIIVQEGYERAQEKIHDYESGKLEAIPGSTVQETLEATLNQILSNVRESCAQIAL 1023
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELH +N PL+M+L GSKGS INI+QMI +GQQ+ G R P+ F RS P+F +SK+P
Sbjct: 1024 KELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSAPYFYHYSKEP 1083
Query: 234 ASKGNV 239
+KG +
Sbjct: 1084 NAKGFI 1089
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 76/125 (60%), Gaps = 15/125 (12%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQP-KSKS-------RGLIQRLKGKQGRFRGNLSGKRV 57
W+ L + +L IP +QP KSK+ G+I RLKGK GRFR NLSGKRV
Sbjct: 367 WDQLNMDISLLY---IGKIPGGVQPVKSKTDSGTKEGTGIIDRLKGKAGRFRSNLSGKRV 423
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
+F+ RTVISP+P L + QV IP +A+ LT+PE V N L++L+LNG +PG A
Sbjct: 424 NFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPG---A 479
Query: 118 KERLL 122
E LL
Sbjct: 480 NEVLL 484
>gi|385804832|ref|YP_005841232.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi C23]
gi|339730324|emb|CCC41653.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi C23]
Length = 978
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+PE VA+ +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVTARNVDRAQQYVRNGPEGHPGANYVKR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 453 PDGRRLKVTEKNCEELAEKIDAG 475
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLV 184
Y + +I E G L++ PG + +ETLE I+++L RD AG+ N +V
Sbjct: 725 AYDQVNEFIDVYEDGELESLPGRTVDETLEMKIMQQLGKARDSAGEIAEDHFEDDNPAVV 784
Query: 185 MALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
MA SG++GS +N++QM CVGQQA+ G+R+ G++ R+L H+
Sbjct: 785 MARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHY 826
>gi|383620453|ref|ZP_09946859.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
gi|448697814|ref|ZP_21698692.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
gi|445781180|gb|EMA32041.1| DNA-directed RNA polymerase subunit A' [Halobiforma lacisalsi AJ5]
Length = 974
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 330 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 389
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 390 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEKARRFVSNGPEGHPGANYVRR 449
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 450 PDGRRLKVTEKNCEQLAEKVEAG 472
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + Y + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 716 DETIDDAYDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFTS 775
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L H+
Sbjct: 776 ENPAVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHY 823
>gi|110669268|ref|YP_659079.1| DNA-directed RNA polymerase subunit A' [Haloquadratum walsbyi DSM
16790]
gi|109627015|emb|CAJ53491.1| DNA-directed RNA polymerase subunit A' (subunit A) [Haloquadratum
walsbyi DSM 16790]
Length = 978
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+PE VA+ +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVTARNVDRAQQYVRNGPEGHPGANYVKR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 453 PDGRRLKVTEKNCEELAEKIDAG 475
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 40/102 (39%), Positives = 63/102 (61%)
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLV 184
Y + +I E G L++ PG + +ETLE I+++L RD AG+ N +V
Sbjct: 725 AYDQVNEFIDVYEDGELESLPGRTVDETLEMKIMQQLGKARDSAGEIAEDHFEDDNPAVV 784
Query: 185 MALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
MA SG++GS +N++QM CVGQQA+ G+R+ G++ R+L H+
Sbjct: 785 MARSGARGSMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHY 826
>gi|397135832|gb|AFO11411.1| RNA polymerase I, partial [Zygosaccharomyces rouxii]
Length = 871
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL + QVG+P+ +AK LTYPE V N + L LV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTMLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++E K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 489 MRQITEAIAEAKVKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRLAEV 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L+ +N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 549 NLNDTNFVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQ+ S+ +
Sbjct: 372 VIPTPAILKPKPLWTGKQLLSVAI 395
>gi|294610773|gb|ADF27178.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A F++++ +GIP +Q ++ I+ RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEYKDLLQYHVATFMDNDIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPG 317
>gi|367011663|ref|XP_003680332.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
gi|359747991|emb|CCE91121.1| hypothetical protein TDEL_0C02320 [Torulaspora delbrueckii]
Length = 1727
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L LV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTFLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 NGDRIDLRYSKRAGDIQ 425
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 676 MREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEV 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 736 NLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQI S+ +
Sbjct: 559 VIPTPAIIKPKPLWTGKQILSIAI 582
>gi|362412151|gb|AEW12841.1| RPB1 [Smittium orthocladii]
Length = 419
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P ++ + + + RL+GK+GR RGNL GKRVDF
Sbjct: 226 IIEEFESLLQFHVATFMNNEISGLPQALRKSGRPIKSIRARLRGKEGRVRGNLMGKRVDF 285
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ +TYPE V N E L+ +V NGP++HPG ++R
Sbjct: 286 SARTVITGDPNIDIDQVGVPRSIARNMTYPEVVTPYNIEKLQAMVQNGPNEHPGAKYVIR 345
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 346 DSGERIDLRYSKRGGDI 362
>gi|294610769|gb|ADF27176.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 356
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A F++++ +GIP +Q ++ I+ RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEYKDLLQYHVATFMDNDIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPG 317
>gi|294610771|gb|ADF27177.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 351
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A F++++ +GIP +Q ++ I+ RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEYKDLLQYHVATFMDNDIAGIPQALQKSGRALKTIRGRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPG 317
>gi|120561207|gb|ABM26989.1| RNA polymerase II largest subunit, partial [Hydnum repandum]
Length = 1010
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ SGIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 218 VITEYEQLLQFHVATYMDNDISGIPQAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDF 277
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+SRTVI+ DPN+ + +VG+P+ +A LTYPERV N L++LV NGP ++PG
Sbjct: 278 SSRTVITGDPNIMLDEVGVPKSIAMTLTYPERVTPYNIAQLQELVRNGPREYPG 331
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 50/119 (42%), Positives = 74/119 (62%), Gaps = 2/119 (1%)
Query: 127 SKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMA 186
+K YI + ++ +PG + E+ E+ + EL++ RD G+ + L N M
Sbjct: 617 AKVYKYIEQGQRDEIKAKPGMTIRESFESEVNAELNICRDDTGRHAEKSLKNDNNVKQMV 676
Query: 187 LSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
++GSKGSFINISQM ACVGQQ++ GKR+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 677 VAGSKGSFINISQMSACVGQQSVEGKRIPFGFKHRTLPHFAKDDYSPEARGFVENSYLR 735
>gi|3063677|gb|AAC14137.1| RNA polymerase II largest subunit [Dictyostelium discoideum]
Length = 757
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 219 IIAEAIQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 278
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP +HPG
Sbjct: 279 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG 332
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S ++ + I ++ + + QPG S ET E + + L+ RD AG + L N
Sbjct: 618 ISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNN 677
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 678 LKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVEN 737
Query: 241 -FLR 243
+LR
Sbjct: 738 SYLR 741
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPK LWTGKQ+FSLI+
Sbjct: 491 VPPPAILKPKQLWTGKQLFSLII 513
>gi|448356450|ref|ZP_21545183.1| DNA-directed RNA polymerase subunit A' [Natrialba chahannaoensis
JCM 10990]
gi|445653483|gb|ELZ06354.1| DNA-directed RNA polymerase subunit A' [Natrialba chahannaoensis
JCM 10990]
Length = 976
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEEARRYVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEALAEKVDAG 474
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +++ + + + + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDETLEMKIMQTLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 770 IADEHFDNENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|397135836|gb|AFO11413.1| RNA polymerase I, partial [Torulaspora delbrueckii]
Length = 871
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 102 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 161
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L LV NGP++HPG ++R
Sbjct: 162 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTFLVRNGPNEHPGAKYVIRD 221
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 222 NGDRIDLRYSKRAGDIQ 238
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ K E + ++ L + G + E+ E +++ L+ RD AG+
Sbjct: 489 MREITETIADAKKKVEDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEV 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P
Sbjct: 549 NLKDLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQI S+ +
Sbjct: 372 VIPTPAIIKPKPLWTGKQILSIAI 395
>gi|294610767|gb|ADF27175.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 362
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A F++++ +G+P +Q + I+ RLKGK+GR RGNL GKRVDF
Sbjct: 211 VVNEYKDLLQYHVATFMDNDIAGLPQALQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDF 270
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 271 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTQYNIARLHQLVRNGPNEHPG 324
>gi|120561231|gb|ABM27001.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 1014
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I++ ++LQ H A F+++E SG+P MQ + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 219 IKDHEDFLQFHVATFVDNEISGLPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFS 278
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPNL I +VG+P +A+ LT PE V N HL+ L+ NGP HPG
Sbjct: 279 ARTVITGDPNLSIDEVGVPRSIARNLTLPEIVTRYNIGHLQALLKNGPSTHPG 331
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ QPG + ET EA + + LS AG A + N M ++GSKG
Sbjct: 628 IGEAQKDHLKPQPGLTIRETFEAEVNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKG 687
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
S+INISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 688 SYINISQMSACVGQQNVEGKRIPFGFKYRTLPHFVKDDHSPESRGFVENSYLR 740
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KPK LWTGKQI SLI+ P +C
Sbjct: 490 VPIPAILKPKPLWTGKQILSLII-PKVNC 517
>gi|448396747|ref|ZP_21569195.1| DNA-directed RNA polymerase subunit A' [Haloterrigena limicola JCM
13563]
gi|445673276|gb|ELZ25837.1| DNA-directed RNA polymerase subunit A' [Haloterrigena limicola JCM
13563]
Length = 975
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEDARRFVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEPG 474
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/109 (36%), Positives = 69/109 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +++ + E I A E+ L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIADANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFDD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 ENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|159905693|ref|YP_001549355.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C6]
gi|159887186|gb|ABX02123.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C6]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N E ++ L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIERVRALLRNGADTHPGV 378
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 56/153 (36%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ANKEHLKQLVLNG-------PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGC 147
A K +K LVL G D ++ + LL++ E + E+G L++ PG
Sbjct: 639 ATKMSIKALVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGR 698
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207
EE+ EA I++ L RD AG + L N +MA +G++GS +NI+ M A VGQQ
Sbjct: 699 GVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++ G RV G+ R+LPHF K S D S G V+
Sbjct: 759 SVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVR 791
>gi|257386581|ref|YP_003176354.1| DNA-directed RNA polymerase subunit A' [Halomicrobium mukohataei
DSM 12286]
gi|257168888|gb|ACV46647.1| DNA-directed RNA polymerase subunit A' [Halomicrobium mukohataei
DSM 12286]
Length = 972
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 88/143 (61%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V+ N ++ ++ V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVNERNLDNARRYVANGPEAHPGANYVKR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVEPG 475
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 63/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 722 IDNAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAGDHFDDDNP 781
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L HF
Sbjct: 782 AVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHF 826
>gi|294878143|ref|XP_002768279.1| DNA-directed RNA polymerase III largest subunit, putative
[Perkinsus marinus ATCC 50983]
gi|239870527|gb|EER00997.1| DNA-directed RNA polymerase III largest subunit, putative
[Perkinsus marinus ATCC 50983]
Length = 1133
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 83/129 (64%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + K+ ++E Y+ + I G+L +PGC+AE+TLEAVI EL IR+ G
Sbjct: 404 PEIEAFKKEQVAEKYAYVDEKIEEYRKGKLPLKPGCNAEQTLEAVINGELGKIRNVVGDR 463
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L N P +MA GSKGS IN+SQMI C+GQQ + G+R+ NGF NR+LPHF KFSK
Sbjct: 464 LEKVLPRFNKPRIMAQCGSKGSPINLSQMIVCLGQQNVGGQRIQNGFVNRTLPHFKKFSK 523
Query: 232 DPASKGNVK 240
P S+G V+
Sbjct: 524 TPQSRGFVE 532
>gi|150402532|ref|YP_001329826.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C7]
gi|150033562|gb|ABR65675.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C7]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N E ++ L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIERVRALLRNGADTHPGV 378
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ANKEHLKQLVLNG-------PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGC 147
A K +K +VL G D ++ + LL++ E + E+G L++ PG
Sbjct: 639 ATKMSIKAMVLKGFTTGIDDEDIPEEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGR 698
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207
EE+ EA I++ L RD AG + L N +MA +G++GS +NI+ M A VGQQ
Sbjct: 699 GVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++ G RV G+ R+LPHF K S D S G V+
Sbjct: 759 SVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVR 791
>gi|452823901|gb|EME30907.1| DNA-directed RNA polymerase II subunit A, partial [Galdieria
sulphuraria]
Length = 741
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E + LQ H A ++N+E G+P ++Q + + + QRLKGK+GR RGNL GKRVDF+
Sbjct: 271 LNEQLQLLQYHVATYMNNEIPGLPRSLQRSGRPLKSISQRLKGKEGRIRGNLMGKRVDFS 330
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+PDPN+++ +VG+P+ +A LTYPE V + L+ LV NGP++HPG
Sbjct: 331 ARTVITPDPNIRLDEVGVPKSIAMNLTYPEVVTPLSYGRLQALVANGPNEHPG 383
Score = 43.1 bits (100), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%), Gaps = 1/26 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
IP PAI+KPK LWTGKQ+FS+I PN
Sbjct: 542 IPTPAILKPKELWTGKQLFSMI-TPN 566
>gi|397135798|gb|AFO11394.1| RNA polymerase I, partial [Starmera amethionina]
Length = 870
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 94/143 (65%), Gaps = 5/143 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 100 VINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 159
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV+NGP++HPG ++R
Sbjct: 160 SARTVISGDPNLELGQVGVPKSIARTLTYPETVTPFNIKKLTELVMNGPNEHPGAKYIIR 219
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+ Y+K G I A++ G
Sbjct: 220 DTGDRIDLRYNKRAGDI-ALQYG 241
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + ++ +L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 501 KVDEVTLEVQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVS 560
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 561 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLR 618
>gi|340624673|ref|YP_004743126.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
X1]
gi|339904941|gb|AEK20383.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
X1]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N E ++ L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGADNHPGV 378
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ANKEHLKQLVLNG-------PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGC 147
A K +K +VL G D ++ + LL++ E + E+G L++ PG
Sbjct: 639 ATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGR 698
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207
EE+ EA I++ L RD AG + L N +MA +G++GS +NI+ M A VGQQ
Sbjct: 699 GVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++ G RV G+ R+LPHF K S D S G V+
Sbjct: 759 SVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVR 791
>gi|374635618|ref|ZP_09707213.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
Mc-S-70]
gi|373561684|gb|EHP87913.1| DNA-directed RNA polymerase subunit A' [Methanotorris formicicus
Mc-S-70]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 80/115 (69%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 265 IIEDLWDLLQYHVNTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 324
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VG+PE VAK LT PE+V N +++L+ NG +KHPG+
Sbjct: 325 SARTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNINKIRELLKNGSEKHPGV 379
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 72/125 (57%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R + +L + + IR E+G L+ PG S EE+ EA I+K L RD AG +
Sbjct: 668 REIQEILDKAEEEVNEIIRKYENGELEPLPGRSLEESREAYIMKILGKARDEAGAVAERY 727
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N +MA +G++GS +NI+ M ACVGQQ++ G R+ G+ NR LPHF K S D S
Sbjct: 728 LSKDNHAALMARTGARGSLLNITMMSACVGQQSVRGGRIFRGYRNRVLPHFKKGSLDAKS 787
Query: 236 KGNVK 240
G V+
Sbjct: 788 HGFVR 792
>gi|289581817|ref|YP_003480283.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|448282778|ref|ZP_21474060.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|289531370|gb|ADD05721.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
gi|445575393|gb|ELY29868.1| DNA-directed RNA polymerase subunit A' [Natrialba magadii ATCC
43099]
Length = 976
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTDRNVEEARRYVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEALAEKVDAG 474
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 72/116 (62%), Gaps = 1/116 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +++ + + + + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQSRIDETIEDANDRVEELIEAYENNELESLPGRTLDETLEMKIMQTLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 770 IADEHFDDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|150401218|ref|YP_001324984.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
gi|150013921|gb|ABR56372.1| DNA-directed RNA polymerase subunit A' [Methanococcus aeolicus
Nankai-3]
Length = 888
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E G P + R + QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N + +++L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKQIAKELTIPEKVTKYNIDKIRELIANGADNHPGV 378
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/104 (45%), Positives = 66/104 (63%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
E+G L+ PG S EE+ EA I++ L RD AGK + L +N VMA +G++GS +N
Sbjct: 688 ENGTLELLPGRSPEESREAYIMQVLGKARDDAGKVAERNLSKTNHAAVMARTGARGSLLN 747
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
I+ M CVGQQA+ G R+ G+ +R+LPHF+K S S G V+
Sbjct: 748 ITMMAGCVGQQAVRGGRIFRGYRDRTLPHFEKGSLSAESHGFVR 791
>gi|374327623|ref|YP_005085823.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
gi|356642892|gb|AET33571.1| DNA-directed RNA polymerase subunit alpha [Pyrobaculum sp. 1860]
Length = 884
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 62/149 (41%), Positives = 93/149 (62%), Gaps = 4/149 (2%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LSGKRV++++RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSGKRVNYSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSE 124
ISPDP++ I +VG+P +AK+LT PERV N + L++ V+ GP+ PG A + E
Sbjct: 336 ISPDPHIGINEVGVPYDIAKVLTVPERVTAWNVDVLREYVIRGPETWPG---ANYVITPE 392
Query: 125 GYSKCEGYIRAMESGRLQTQPGCSAEETL 153
G Y++ ++ + PG E L
Sbjct: 393 GRRIDLRYVKDKKTLAERLSPGWIVERHL 421
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 65/108 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
++++ E K E I SGRL+ PG + EET E + + LS +R+ A + +
Sbjct: 670 DKIVEESLKKVESLIGDFRSGRLEAMPGFTVEETFENKVTEILSRVREDAAVVVEKNIDK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++ +MA +G++GS +NI QM+A +GQQ I G+R+ GF R+LPHF
Sbjct: 730 NSEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGFRTRTLPHF 777
>gi|83320456|gb|ABC02855.1| RNA polymerase II largest subunit, partial [Boothiomyces
macroporosum]
Length = 999
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 86/137 (62%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H ++N+ET+GIP Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 208 IIAELENLLQWHVCTYMNNETAGIPQASQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 267
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I QVG+P +A+ LT+PE V N E L Q+V NGP+ HPG ++R
Sbjct: 268 SARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNLEMLSQMVRNGPNVHPGAKHVIR 327
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 328 DTGERIDLRYSKRGGDI 344
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 51/131 (38%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
++A ++ + I ++ L+ PG + + E+++ EL+ RD+AGK+ +
Sbjct: 600 MKAINDTIAHAKKEVNKIILKAQNNELECLPGMTIRGSFESLVNMELNRARDNAGKSAQK 659
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M ++GSKGSF+NISQM ACVGQQ + GKR+P GF +R+LPHF K P
Sbjct: 660 SLKEFNNVKQMVVAGSKGSFLNISQMTACVGQQNVEGKRIPFGFKDRTLPHFTKDDHSPE 719
Query: 235 SKGNVK--FLR 243
S+G V+ +LR
Sbjct: 720 SRGFVENSYLR 730
>gi|336041421|gb|AEH95288.1| RNA polymerase II largest subunit [Malawimonas californiana]
Length = 1014
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+IQE + LQ H A +++E G+P++ Q S + + QRL+GK GR RGNL GKRVD
Sbjct: 204 IIQEFTQLLQYHIATMLDNEMPGMPVSSQRGSGRPLKSIRQRLRGKHGRIRGNLMGKRVD 263
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++RTVI+PDPNL + +VG+P +A LTYPE V N ++QL+ NGP KHPG
Sbjct: 264 FSARTVITPDPNLSVNEVGVPRTIALNLTYPEVVTPYNIARMRQLIENGPMKHPG 318
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 77/126 (61%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
R ++ ++ I+ ++ L+ QPG + ET E+ + L+ RD AGK+ Q L S
Sbjct: 607 RTIAAAKAQVASLIKQAQNHNLEPQPGRTLMETFESKVNSALNTARDKAGKSAEQSLRSS 666
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +GSKGSFINI+QMIACVGQQ + GKR+P GF NR+LPHF P ++G V
Sbjct: 667 NNVKEMVTAGSKGSFINIAQMIACVGQQNVEGKRIPYGFRNRTLPHFVAADYSPEARGFV 726
Query: 240 K--FLR 243
+ +LR
Sbjct: 727 ENSYLR 732
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKP 332
+P PA++KPK LWTGKQIFS+++ P
Sbjct: 477 VPKPAMLKPKVLWTGKQIFSMLIPP 501
>gi|448457213|ref|ZP_21595708.1| DNA-directed RNA polymerase subunit A' [Halorubrum lipolyticum DSM
21995]
gi|445810794|gb|EMA60809.1| DNA-directed RNA polymerase subunit A' [Halorubrum lipolyticum DSM
21995]
Length = 968
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VAK +T V N E +Q V NGP+ HPG
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVEEARQYVRNGPEAHPG 438
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IGSAYDRVQELISTYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|20090127|ref|NP_616202.1| DNA-directed RNA polymerase subunit A' [Methanosarcina acetivorans
C2A]
gi|19915107|gb|AAM04682.1| DNA-directed RNA polymerase, subunit A [Methanosarcina acetivorans
C2A]
Length = 880
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/114 (52%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++ SGIP + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 261 IIEDLWELLQYHVTTFFDNSVSGIPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VG+P +A+ LT P V N E LK V NG D HPG
Sbjct: 321 SARTVISPDPNLSINEVGVPMPIARTLTIPAVVTPRNIEQLKVYVRNGEDIHPG 374
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 70/120 (58%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+L + + I++ ++ L+ PG + +ET+E I+++L RD G + N
Sbjct: 663 VLGKAEDAVQNLIKSYQNKELEPLPGRTLDETIEMSIMQKLGKARDETGGIADSHMGLEN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+ R+LPHF + + G VK
Sbjct: 723 SAVIMARSGARGSILNLTQMAACVGQQAVRGERIRRGYAGRTLPHFQEGDLGSDAHGFVK 782
>gi|159467413|ref|XP_001691886.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
gi|158278613|gb|EDP04376.1| DNA-directed RNA polymerase II, largest subunit [Chlamydomonas
reinhardtii]
Length = 1789
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/369 (30%), Positives = 170/369 (46%), Gaps = 60/369 (16%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H + ++ + GIP + Q + + + +RLKGK GR RGNL GKRVDF
Sbjct: 276 VIAEQIMALQYHITTYFDNSSPGIPKSNQKSGRPIKSISERLKGKSGRIRGNLMGKRVDF 335
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+ DPN+ I ++G+P +A LT+PE V N E L++LV NGP+ PG AK
Sbjct: 336 SARTVITGDPNIGIDELGVPWSIALNLTFPETVTPFNIEKLQKLVDNGPNPPPGETGAKH 395
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA-CLQELHP 178
+ +G ++ RL +PG + V K + D G A C E H
Sbjct: 396 IIREDGRRVSLAVVKGDADRRL--EPG-------DKVGGKGTQMTADGGGVARCCVERHL 446
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD-KFSKDPASKG 237
NG LV L + S +S M G RV R LP+ + + +
Sbjct: 447 INGDLV--LFNRQPSLHKMSMM----------GHRV------RILPYSTFRLNLSVTTPY 488
Query: 238 NVKFLRYGNRLKIA------SELKSAYLVWR----------VAGSI-SARGELHPKQKTD 280
N F + +A +E+ + +V R V G + A K D
Sbjct: 489 NADFDGDEMNMHVAQTHETRAEMANLMMVPRNIVSPQANKPVMGIVQDALLGTRMMTKRD 548
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNA 340
++ +++ V+ + + +V +P A++KP+ LWTGKQIFS+ + +
Sbjct: 549 IFIEKDNFMNCVMG----IEDWDGTVPMP--AVLKPRPLWTGKQIFSMFVP-------DV 595
Query: 341 NLKTKGRAY 349
NLK K Y
Sbjct: 596 NLKNKSAWY 604
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 75/125 (60%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++ E K + + + L+ QPG + E+ EA + + L+ RD AGKA + SN
Sbjct: 696 IIEEAKRKVKEVVEKYQQNALEAQPGRTIHESFEAQVNQILNKCRDDAGKAAYMSVDLSN 755
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV- 239
+ M +GSKGS INISQM+ CVGQQ + GKR+P GF NR+LPHF+K P ++G V
Sbjct: 756 NIIKMVTAGSKGSNINISQMMGCVGQQNVEGKRIPFGFQNRTLPHFNKDDLGPEARGFVG 815
Query: 240 -KFLR 243
+LR
Sbjct: 816 NSYLR 820
>gi|45358926|ref|NP_988483.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
S2]
gi|45047792|emb|CAF30919.1| RNA polymerase, alpha subunit [Methanococcus maripaludis S2]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N E ++ L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRALLRNGSDNHPGV 378
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 81/153 (52%), Gaps = 7/153 (4%)
Query: 95 ANKEHLKQLVLNG-------PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGC 147
A K +K +VL G D ++ + LL++ E + E+G L++ PG
Sbjct: 639 ATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGR 698
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207
EE+ EA I++ L RD AG + L N +MA +G++GS +NI+ M A VGQQ
Sbjct: 699 GVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++ G RV G+ R+LPHF K S D S G V+
Sbjct: 759 SVRGGRVFRGYRERTLPHFGKGSLDAKSHGFVR 791
>gi|134045260|ref|YP_001096746.1| DNA-directed RNA polymerase subunit A' [Methanococcus maripaludis
C5]
gi|132662885|gb|ABO34531.1| DNA-directed RNA polymerase, subunit A' [Methanococcus maripaludis
C5]
Length = 889
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIP+ +AK LT PE+V N E ++ L+ NG D HPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPKLIAKELTVPEKVTPYNIEKVRTLLRNGADTHPGV 378
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 55/153 (35%), Positives = 82/153 (53%), Gaps = 7/153 (4%)
Query: 95 ANKEHLKQLVLNG-------PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGC 147
A K +K +VL G D ++ + LL++ E + E+G L++ PG
Sbjct: 639 ATKMSIKAMVLKGFTTGIDDEDIPAEAIQEIQDLLNKAEQDVEDIVEKYENGTLESLPGR 698
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207
EE+ EA I++ L RD AG + L N +MA +G++GS +NI+ M A VGQQ
Sbjct: 699 GVEESREAYIMQILGKARDQAGNVAEKYLSKENHAALMARTGARGSLLNITMMAASVGQQ 758
Query: 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++ G RV G+ +R+LPHF K S D S G V+
Sbjct: 759 SVRGGRVFRGYRDRTLPHFGKGSLDAKSHGFVR 791
>gi|448388147|ref|ZP_21565087.1| DNA-directed RNA polymerase subunit A' [Haloterrigena salina JCM
13891]
gi|445670798|gb|ELZ23395.1| DNA-directed RNA polymerase subunit A' [Haloterrigena salina JCM
13891]
Length = 974
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + ++ V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLDEARRFVSNGPEGHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 451 PDGRRLKVTEKNCEQLAEKVEAG 473
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/122 (34%), Positives = 73/122 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E+ L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 717 DETIEDANDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFDD 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+++ + G
Sbjct: 777 ENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYEQNDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|387596460|gb|EIJ94081.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm1]
Length = 1612
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A +N++ SG P ++Q + + + RL+GK+GR RGNL GKRVDF
Sbjct: 277 IIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDF 336
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+PE +A++LT+PERV N + L QLV GP HPG
Sbjct: 337 SARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNIDKLTQLVHRGPYNHPG 390
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 121 LLSEGYSKCEGYIRAM----ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQEL 176
++ E + +G ++ + ES L+ PG + E+ EA + L+ RD +G + + L
Sbjct: 669 MIKEAIEQAKGDVKDIIVQAESNNLERLPGLTMRESFEAAVTLALNKARDTSGTSTQKNL 728
Query: 177 HPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASK 236
N M +SGSKGS+INISQM ACVGQQ++ GKR+ NGF +RSLPHF K S+
Sbjct: 729 RSQNNIKQMVVSGSKGSYINISQMSACVGQQSVEGKRILNGFRDRSLPHFTKDDFTAESR 788
Query: 237 GNV 239
G +
Sbjct: 789 GFI 791
>gi|83320414|gb|ABC02834.1| RNA polymerase II largest subunit, partial [Coelomomyces
stegomyiae]
Length = 542
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I++ ++LQ H A F+++E SG+P MQ + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 25 IKDHEDFLQFHVATFVDNEISGLPRAMQRSGRPIKAIRSRLKGKEGRLRGNLMGKRVDFS 84
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPNL I +VG+P +A+ LT PE V N HL+ L+ NGP HPG
Sbjct: 85 ARTVITGDPNLSIDEVGVPRSIARNLTLPEIVTRYNIGHLQALLKNGPSTHPG 137
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ QPG + ET EA + + LS AG A + N M ++GSKG
Sbjct: 434 IGEAQKDHLKPQPGLTIRETFEAEVNQTLSDTVTSAGAAAQRSFKEQNNVKQMVVAGSKG 493
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S+INISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 494 SYINISQMSACVGQQNVEGKRIPFGFKYRTLPHFVKDDHSPESRGFVE 541
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KPK LWTGKQI SLI+ P +C
Sbjct: 296 VPIPAILKPKPLWTGKQILSLII-PKVNC 323
>gi|387594692|gb|EIJ89716.1| DNA-directed RNA polymerase II subunit RPB1 [Nematocida parisii
ERTm3]
Length = 1612
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ + LQ H A +N++ SG P ++Q + + + RL+GK+GR RGNL GKRVDF
Sbjct: 277 IIRDYEQLLQFHIATLMNNDISGQPQSLQKNGRPLKAIRARLRGKEGRVRGNLMGKRVDF 336
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+PE +A++LT+PERV N + L QLV GP HPG
Sbjct: 337 SARTVITADPNISMNEVGVPEEIARMLTFPERVTEYNIDKLTQLVHRGPYNHPG 390
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 50/123 (40%), Positives = 73/123 (59%), Gaps = 4/123 (3%)
Query: 121 LLSEGYSKCEGYIRAM----ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQEL 176
++ E + +G ++ + ES L+ PG + E+ EA + L+ RD +G + + L
Sbjct: 669 MIKEAIEQAKGDVKDIIVQAESNNLERLPGLTMRESFEAAVTLALNKARDTSGTSTQKNL 728
Query: 177 HPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASK 236
N M +SGSKGS+INISQM ACVGQQ++ GKR+ NGF +RSLPHF K S+
Sbjct: 729 RSQNNIKQMVVSGSKGSYINISQMSACVGQQSVEGKRILNGFRDRSLPHFTKDDFTAESR 788
Query: 237 GNV 239
G +
Sbjct: 789 GFI 791
>gi|214028084|gb|ACJ63311.1| RNA polymerase III large subunit [Papaver orientale]
Length = 554
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 77/113 (68%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
KC+ I ++G+L+ QPGC A +TLEA I + IR+ A C++ LH N PL+M+
Sbjct: 214 KCDKLIEHYKTGKLELQPGCDAAQTLEAEITGIQNNIREKAATVCMENLHWRNSPLIMSQ 273
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
GSKGS NI+QMIACVGQQ++ G+R NGF +RSLPHF + S P +KG V+
Sbjct: 274 CGSKGSPSNITQMIACVGQQSVGGRRAMNGFIDRSLPHFPRNSVTPDAKGFVE 326
Score = 45.1 bits (105), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 31/45 (68%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
++ +P PA++KP LWTGKQ+F+++++P+ V NL ++Y
Sbjct: 71 AIDLPTPALIKPVELWTGKQLFNVLIRPHAQMRVFVNLTVFEKSY 115
>gi|452844541|gb|EME46475.1| hypothetical protein DOTSEDRAFT_70470 [Dothistroma septosporum
NZE10]
Length = 1773
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 4/140 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G+P Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 301 ILEEFTTLLQYHVATYMDNDIAGLPRAQQKTGRPLKAIRARLKSKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + QVG+P +A++LT+PERV NK L +LV NGP +HPG ++R
Sbjct: 361 SARTVITGDPNLDLDQVGVPRSIARVLTFPERVTPYNKHKLTELVRNGPLEHPGAKFIIR 420
Query: 117 AKERLLSEGYSKCEGYIRAM 136
+ Y K G I M
Sbjct: 421 DDGSRIDLRYHKRAGEINLM 440
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 2/117 (1%)
Query: 129 CEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALS 188
+G+ +++ L+ PG + ET E+ L R+ +G + ++ N +M S
Sbjct: 704 VQGFETEVQANELEPAPGMTIRETFESKTKAALDNARNKSGDVAYKHMNACNNVGIMVKS 763
Query: 189 GSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GSKGS N+SQM A VGQQ++ GKR+P GF R LPHF K PAS+G V+ +LR
Sbjct: 764 GSKGSTTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFPKDDYSPASRGFVENSYLR 820
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 7/36 (19%)
Query: 307 IIPPPAIMKPKALWTGKQIFSL-------ILKPNRD 335
++PPPAI+KP WTGKQI SL IL+P +D
Sbjct: 572 VVPPPAIIKPLPRWTGKQIASLALPAGLNILRPKKD 607
>gi|321259651|ref|XP_003194546.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus gattii
WM276]
gi|317461017|gb|ADV22759.1| DNA-directed RNA polymerase II largest subunit, putative
[Cryptococcus gattii WM276]
Length = 1786
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H +++++ +G+P + Q ++ + + RLKGK+GR RGNL GKRVDF
Sbjct: 304 VVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P+ +A LTYPERV N +L+ LV NGP +PG
Sbjct: 364 SARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPG 417
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E + ++ E+ R++ +PG + ETLEA I EL+ RD GK L N
Sbjct: 700 MVEAKEAVQKLVQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNN 759
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SG+KGSFINISQM VGQQ + GKR+ GF +RSLPHF K P S+G V+
Sbjct: 760 VKQMVVSGAKGSFINISQMSGVVGQQFVEGKRIAFGFRHRSLPHFSKDDYGPESRGFVEN 819
Query: 241 -FLR 243
+LR
Sbjct: 820 SYLR 823
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI KPK +WTGKQ+ S+ +
Sbjct: 576 IPPPAIFKPKPMWTGKQLLSMTI 598
>gi|111154416|gb|ABH07422.1| RNA polymerase II largest subunit [Dibaeis baeomyces]
Length = 366
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE + LQ H A ++++ +G+P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVQEFEQLLQYHVATLMDNDIAGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIHKLHQLVRNGPNEHPG 317
>gi|410670214|ref|YP_006922585.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
gi|409169342|gb|AFV23217.1| DNA-directed RNA polymerase subunit alpha [Methanolobus
psychrophilus R15]
Length = 880
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++E SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 261 IIEDLWELLQYHVTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTV+SP+PNL I +VG+P +A +T PERV N + L+ VL G + HPG
Sbjct: 321 SARTVVSPEPNLSINEVGVPFEIAHQMTIPERVTTRNIDLLRMYVLRGSEVHPG 374
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 49/120 (40%), Positives = 76/120 (63%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
LL+E + I+A E+ L+ PG + +ET+E I++EL RD G ++L N
Sbjct: 663 LLNEAEENVQRLIQAYEAKELEALPGRTMDETIEMKIMQELGKARDQTGNIAGRQLGLEN 722
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM ACVGQQA+ G+R+ G++ R+LPHFDK ++G VK
Sbjct: 723 SAVIMAKSGARGSMLNLTQMAACVGQQAVRGERIRRGYNGRTLPHFDKGDLGADARGFVK 782
>gi|405120884|gb|AFR95654.1| DNA-directed RNA polymerase II largest subunit [Cryptococcus
neoformans var. grubii H99]
Length = 1786
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H +++++ +G+P + Q ++ + + RLKGK+GR RGNL GKRVDF
Sbjct: 304 VVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P+ +A LTYPERV N +L+ LV NGP +PG
Sbjct: 364 SARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPG 417
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E + I+ E+ R++ +PG + ETLEA I EL+ RD GK L N
Sbjct: 700 MVEAKEAVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNN 759
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SG+KGSFINISQM VGQQ + GKR+ GF +RSLPHF + P S+G V+
Sbjct: 760 VKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVEN 819
Query: 241 -FLR 243
+LR
Sbjct: 820 SYLR 823
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI KPK +WTGKQ+ S+ +
Sbjct: 576 IPPPAIFKPKPMWTGKQLLSMTI 598
>gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga
brevicollis]
Length = 1743
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
MI+E E++Q A +++ +P + Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 221 MIEECVEYIQFKVATLMDNNLPHMPQSQQRSGRPIKAISQRLKGKEGRVRGNLMGKRVDF 280
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPNL I QVG+P VA LT PERV + N + Q V NGP +HPG
Sbjct: 281 SARTVITPDPNLAIDQVGVPRTVAAKLTVPERVTNFNLNKMNQYVANGPTQHPG----AR 336
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLE 154
++ E ++ + +I S R QPG E L+
Sbjct: 337 YIIQEDGTRIDLHIARSHSDR-TLQPGFIVERHLQ 370
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 67/121 (55%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E L E + I ++ ++ +PG + ET E + L+ + + AGK+ L
Sbjct: 621 EELTQEATRSVDELITKAQADDIKPKPGNTVRETFEVEVNTVLNDMVNKAGKSAQNSLSI 680
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N M+ +GSKG INISQ+IACVGQQ + GKR+P GF R+LPHF K P S+G
Sbjct: 681 HNNFKAMSTAGSKGGPINISQIIACVGQQNVEGKRIPFGFKYRTLPHFVKDDYGPDSRGF 740
Query: 239 V 239
V
Sbjct: 741 V 741
>gi|58267574|ref|XP_570943.1| DNA-directed RNA polymerase ii largest subunit [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112243|ref|XP_775097.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257749|gb|EAL20450.1| hypothetical protein CNBE3710 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227177|gb|AAW43636.1| DNA-directed RNA polymerase ii largest subunit, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 1786
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E ++ LQ H +++++ +G+P + Q ++ + + RLKGK+GR RGNL GKRVDF
Sbjct: 304 VVNEQFDLLQYHVCTYMDNDIAGLPRDQQKGGRAIKAIRARLKGKEGRMRGNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P+ +A LTYPERV N +L+ LV NGP +PG
Sbjct: 364 SARTVITGDPNLQLDQVGVPKSIAMTLTYPERVTPYNIVYLQTLVNNGPATYPG 417
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ E + I+ E+ R++ +PG + ETLEA I EL+ RD GK L N
Sbjct: 700 MVEAKEAVQKLIQEAEANRMKPKPGMTIRETLEASIAAELNKARDWTGKTTQDNLKADNN 759
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SG+KGSFINISQM VGQQ + GKR+ GF +RSLPHF + P S+G V+
Sbjct: 760 VKQMVVSGAKGSFINISQMSGVVGQQFVEGKRISFGFRHRSLPHFSRDDYGPESRGFVEN 819
Query: 241 -FLR 243
+LR
Sbjct: 820 SYLR 823
Score = 40.8 bits (94), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI KPK +WTGKQ+ S+ +
Sbjct: 576 IPPPAIFKPKPMWTGKQLLSMTI 598
>gi|448312200|ref|ZP_21501950.1| DNA-directed RNA polymerase subunit A' [Natronolimnobius
innermongolicus JCM 12255]
gi|445602707|gb|ELY56679.1| DNA-directed RNA polymerase subunit A' [Natronolimnobius
innermongolicus JCM 12255]
Length = 977
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLDDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + Y + E I A E+ L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIDDAYDRVEELIEAYENNELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFDD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 ENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|397135800|gb|AFO11395.1| RNA polymerase I, partial [Barnettozyma populi]
Length = 871
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/137 (45%), Positives = 89/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYI 133
L Y+K G I
Sbjct: 221 DNGDRLDLRYNKRAGDI 237
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + +L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 KVEEVTDEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFGDRTLPHFAKDDYSPQSKGFVENSYLR 619
>gi|392596906|gb|EIW86228.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Coniophora puteana RWD-64-598 SS2]
Length = 1746
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 298 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 357
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 358 SARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTTYPG 411
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 9/132 (6%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+++ K++L+SE + RL+ PG + E+ E+ + +EL+ RD +G+
Sbjct: 691 VIQGKKKLVSE-------IVEDAYHDRLKALPGMTIRESFESKVERELNRARDESGQYAQ 743
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N M ++GSKGS+INISQM CVGQQ++ GKR+P GF +R+LPHF K P
Sbjct: 744 KNLSDDNNVKQMVVAGSKGSYINISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSP 803
Query: 234 ASKGNVK--FLR 243
S+G V+ +LR
Sbjct: 804 ESRGFVENSYLR 815
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI KPK LWTGKQI S+++
Sbjct: 569 VPPPAIFKPKPLWTGKQILSMVI 591
>gi|126460695|ref|YP_001056973.1| DNA-directed RNA polymerase subunit A' [Pyrobaculum calidifontis
JCM 11548]
gi|126250416|gb|ABO09507.1| DNA-directed RNA polymerase, subunit A' [Pyrobaculum calidifontis
JCM 11548]
Length = 884
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/109 (50%), Positives = 78/109 (71%), Gaps = 1/109 (0%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W+ LQ H A + ++E GIP+ + +G+ QRLKGK+GRFRG+LS KRV+F++RTV
Sbjct: 276 WDLLQYHVATYFDNELPGIPVAKHRGGRPLKGIAQRLKGKEGRFRGSLSSKRVNFSARTV 335
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
ISPDP++ I +VG+P +AK+LT PERV N + L++ VL GP+ PG
Sbjct: 336 ISPDPHISINEVGVPIDIAKVLTVPERVTTWNIDALREYVLRGPEAWPG 384
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
++L+ G K + I+ +SGRL+ PG + EET E I + LS +R+ A + +
Sbjct: 670 DKLIESGLKKADELIQEFKSGRLEAMPGFTVEETFENKITEVLSRVREDAATVVEKYIRK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++ +MA +G++GS +NI QM+A +GQQ I G+R+ G+ R+LPHF
Sbjct: 730 NSEGYLMAKTGARGSIVNIVQMVATLGQQTIRGERIRRGYRTRTLPHF 777
>gi|326431524|gb|EGD77094.1| polymerase II polypeptide A [Salpingoeca sp. ATCC 50818]
Length = 1834
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 69/156 (44%), Positives = 96/156 (61%), Gaps = 8/156 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E+ +LQ A ++ +P++MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIEENVLYLQFKVATLFDNNLPHMPMSMQKSGRPIKAISQRLKGKEGRIRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPNL+I QVG+P VA LT PERV + N +KQ V GP++HPG AK
Sbjct: 362 SARTVINPDPNLEIDQVGVPTSVALTLTVPERVTNFNINTMKQYVDRGPNQHPG---AKY 418
Query: 120 RLLSEGYSKCEGYIR-AMESGRLQTQPGCSAEETLE 154
+ +G + R AM+ L QPG E L+
Sbjct: 419 IIRDDGQRIDLRHARNAMD---LNLQPGYIVERHLK 451
Score = 82.0 bits (201), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 64/112 (57%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K I+ + +++ PG + +T EA + K L+ + G A + L N M+
Sbjct: 723 KVNELIQDAQLDKIEPSPGHTIRQTFEAKVNKNLNQVIKKTGGAVQKALSEHNNFKAMST 782
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+GSKGS INISQ+IACV QQ + GKR+P GF +RSLPHF K P + G V
Sbjct: 783 AGSKGSEINISQIIACVSQQNVEGKRIPFGFRHRSLPHFVKDDYGPHACGFV 834
Score = 39.3 bits (90), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PA++KPK LWTGKQ+ S++L
Sbjct: 574 LPEPALLKPKELWTGKQLVSMVL 596
>gi|448342574|ref|ZP_21531522.1| DNA-directed RNA polymerase subunit A' [Natrinema gari JCM 14663]
gi|445625329|gb|ELY78691.1| DNA-directed RNA polymerase subunit A' [Natrinema gari JCM 14663]
Length = 975
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVQDARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVEAG 474
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 69/109 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +++ + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIADANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFQD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 778 DNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|291170448|gb|ADD82433.1| RNA polymerase II largest subunit [Dothideomycetes sp. AN13]
Length = 359
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A ++++E +G+P +Q + I+ RLKGK+GR RGNL GKRVDF
Sbjct: 208 VVNEYETLLQYHVATYMDNEIAGVPQALQKSGRPLKTIRSRLKGKEGRLRGNLMGKRVDF 267
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ILTYPE V N L QLV NGP++HPG
Sbjct: 268 SARTVITGDPNLSLDEVGVPRSIARILTYPETVTPYNIAKLHQLVRNGPNEHPG 321
>gi|68370162|ref|XP_682682.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 isoform 1
[Danio rerio]
Length = 1972
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 299 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 359 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 412
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 714 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 773
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 774 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 821
Score = 43.1 bits (100), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQIFSLI+
Sbjct: 571 VPQPAILKPRPLWTGKQIFSLII 593
>gi|292654527|ref|YP_003534424.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
gi|291371230|gb|ADE03457.1| DNA-directed RNA polymerase subunit A [Haloferax volcanii DS2]
Length = 976
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNVDEARQYVRNGPESHPGANYVRR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVELG 475
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 719 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 778
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 779 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 838
Query: 239 VK 240
V+
Sbjct: 839 VE 840
>gi|448363836|ref|ZP_21552431.1| DNA-directed RNA polymerase subunit A' [Natrialba asiatica DSM
12278]
gi|445645420|gb|ELY98424.1| DNA-directed RNA polymerase subunit A' [Natrialba asiatica DSM
12278]
Length = 975
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVQAG 474
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG
Sbjct: 713 AQERIDETIEDANDRVEELIEAYERGELESLPGRTLDETLEMKIMQTLSRARDNAGNIAD 772
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 773 EHFSDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|328772047|gb|EGF82086.1| hypothetical protein BATDEDRAFT_86817 [Batrachochytrium
dendrobatidis JAM81]
Length = 1797
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A ++N++ + +P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 299 IVNEFENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I QVG+P +A+ LT+PE V N + L+Q+V NGP++HPG ++R
Sbjct: 359 SARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGAKYVIR 418
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 419 DNGERVDLRYSKRGGDI 435
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++ L+ PG + ++ E+++ +EL+ RD+AGK+ + L N M +SGSKG
Sbjct: 709 IQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKG 768
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF +R+LPHF + P S+G V+ +LR
Sbjct: 769 SFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLR 821
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L L +L + IIP PAI+KP LWT KQI SLIL
Sbjct: 544 KFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILKPIPLWTAKQIISLIL 593
>gi|326672374|ref|XP_003199653.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [Danio
rerio]
Length = 1921
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 299 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 359 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 412
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 714 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 773
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 774 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 821
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQIFSLI+
Sbjct: 571 VPQPAILKPRPLWTGKQIFSLII 593
>gi|115492277|ref|XP_001210766.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
gi|114197626|gb|EAU39326.1| DNA-directed RNA polymerase II largest subunit [Aspergillus terreus
NIH2624]
Length = 1742
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A+ LTYPE V N E L+QLV+NGP++HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG 417
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 68/118 (57%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ E + L+ PG + ET E+ + + L+ RD AG + L N + MA
Sbjct: 710 EVEAITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKDLNNAIQMAR 769
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 770 SGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 827
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQ+ S+ L
Sbjct: 575 VIPPPAILKPRPRWTGKQMISMAL 598
>gi|448293470|ref|ZP_21483576.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
gi|445570524|gb|ELY25084.1| DNA-directed RNA polymerase subunit A' [Haloferax volcanii DS2]
Length = 974
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNVDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|448444629|ref|ZP_21589919.1| DNA-directed RNA polymerase subunit A' [Halorubrum saccharovorum
DSM 1137]
gi|445686042|gb|ELZ38383.1| DNA-directed RNA polymerase subunit A' [Halorubrum saccharovorum
DSM 1137]
Length = 968
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVDEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IQSAYDRVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|448579179|ref|ZP_21644456.1| DNA-directed RNA polymerase subunit A' [Haloferax larsenii JCM
13917]
gi|445723858|gb|ELZ75494.1| DNA-directed RNA polymerase subunit A' [Haloferax larsenii JCM
13917]
Length = 973
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVATEMTQTMNVTDRNIDEARQYVRNGPESHPGANYVRR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVEVG 475
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 719 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFDE 778
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 779 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEERTLSHYQKGDLSAEAHGF 838
Query: 239 VK 240
V+
Sbjct: 839 VE 840
>gi|398398966|ref|XP_003852940.1| DNA-directed RNA polymerase II subunit RPB1 [Zymoseptoria tritici
IPO323]
gi|339472822|gb|EGP87916.1| hypothetical protein MYCGRDRAFT_99873 [Zymoseptoria tritici IPO323]
Length = 1773
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 89/136 (65%), Gaps = 4/136 (2%)
Query: 3 QEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+E + LQ H A +++++ +G+P ++Q + + + RLK K+GR RGNL GKRVDF++
Sbjct: 303 EEFFGLLQYHVATYMDNDIAGLPRSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVDFSA 362
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRAK 118
RTVI+ DPNL + QVG+P A++LT+PERV N +++LV NGPD+HPG ++R
Sbjct: 363 RTVITGDPNLDLDQVGVPRSTARVLTFPERVTVYNIHKMQELVRNGPDQHPGAKHVIRED 422
Query: 119 ERLLSEGYSKCEGYIR 134
+ Y K G I+
Sbjct: 423 GSRIDLRYHKRAGEIQ 438
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD H ++ E + E + + Y+ ++S ++T PG + ET E+ L R+
Sbjct: 685 PDDH--MVGEIEGAIVEEKLQVDKYVEQVQSDAMETLPGMTIRETFESQTKAALDNARNK 742
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG A + N VM SGSKGS N+SQM A VGQQ++ GKR+P GF R LPHF
Sbjct: 743 AGDAAFALMKSCNNVGVMVNSGSKGSSTNVSQMTAAVGQQSLEGKRLPFGFKYRVLPHFP 802
Query: 228 KFSKDPASKGNVK--FLR 243
K PAS+G V+ +LR
Sbjct: 803 KDDYSPASRGFVENSYLR 820
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
++PPPAI+KP+ WTGKQ+ SL P
Sbjct: 572 VVPPPAIIKPQPRWTGKQVASLFFPP 597
>gi|113707384|gb|ABI36591.1| RNA polymerase II largest subunit [Gyalideopsis vulgaris]
Length = 1015
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 222 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 281
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 282 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPG 335
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 55/138 (39%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD++ +R E +++ + E ++ +L++ PG + ET E+ + K L+ RD
Sbjct: 604 PDRNT--IRQIEGAVNKQKDEVEEITKSATENQLESLPGMNVRETFESKVSKALNKARDD 661
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N + MA SGSKGS INISQ A VGQQ++ GKR P GF R+LPHF
Sbjct: 662 AGSVTEENLKDLNNAIQMARSGSKGSTINISQTTAVVGQQSVEGKRTPFGFKYRTLPHFT 721
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 722 KDDYSPESRGFVENSYLR 739
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 20/26 (76%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
+IP PAI KPK LWTGKQI L++ P
Sbjct: 493 VIPQPAIFKPKPLWTGKQILGLVIPP 518
>gi|397135924|gb|AFO11457.1| RNA polymerase I, partial [Peterozyma toletana]
Length = 870
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/115 (49%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 99 VISEYESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 158
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVIS DPNL++ QVG+P +A+ LTYPE V N L +LV NGP++HPGL
Sbjct: 159 SARTVISGDPNLELDQVGVPRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPGL 213
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/118 (44%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K I + L +PG + E+ E + + L+ RD GKA L N M
Sbjct: 500 KVHEIILKAQRNELPPEPGMTLRESFEQSVSQVLNQARDDVGKATADALQDWNNVKQMVS 559
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS INISQM ACVGQQ + GKR+P GF +RSLPHF K P S+G V+ +LR
Sbjct: 560 AGSKGSNINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESRGFVENSYLR 617
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 6/45 (13%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+IP P I+KPK LWTGKQ+ S+++ P NL+ K +T+
Sbjct: 370 VIPEPTIVKPKPLWTGKQMLSMVI------PKGINLERKDEKFTY 408
>gi|348523738|ref|XP_003449380.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oreochromis niloticus]
Length = 1966
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 300 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 359
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 360 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 413
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 715 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 774
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 775 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 822
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQIFSLI+
Sbjct: 572 MPQPAILKPRPLWTGKQIFSLII 594
>gi|67517057|ref|XP_658413.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|40746483|gb|EAA65639.1| hypothetical protein AN0809.2 [Aspergillus nidulans FGSC A4]
gi|259488909|tpe|CBF88741.1| TPA: DNA-directed RNA polymerase Fragment (EC 2.7.7.6)
[Source:UniProtKB/TrEMBL;Acc:Q873Q6] [Aspergillus
nidulans FGSC A4]
Length = 1745
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 302 VVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A+ LTYPE V N E L+QLV+NGP++HPG
Sbjct: 362 SARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG 415
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/106 (46%), Positives = 64/106 (60%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
+L+ PG + ET E+ + L+ RD AG A + L N + M+ SGSKGS INISQ
Sbjct: 721 KLEPLPGMNVRETFESKVSVALNTARDEAGTATEKSLKDLNNAVQMSRSGSKGSIINISQ 780
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M A VGQQ + GKR+ GF R+LPHF K P S+G V+ +LR
Sbjct: 781 MTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPESRGFVENSYLR 826
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI KP+ WTGKQ+ S++
Sbjct: 573 VIPPPAIFKPRPRWTGKQMISMVF 596
>gi|294610775|gb|ADF27179.1| RNA polymerase II largest subunit [Coniosporium apollinis]
Length = 357
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A F++++ +GIP +Q + I+ RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEYKDLLQYHVATFMDNDIAGIPQALQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPG 317
>gi|448560712|ref|ZP_21634160.1| DNA-directed RNA polymerase subunit A' [Haloferax prahovense DSM
18310]
gi|445722362|gb|ELZ74025.1| DNA-directed RNA polymerase subunit A' [Haloferax prahovense DSM
18310]
Length = 976
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVELG 475
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 719 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 778
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 779 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 838
Query: 239 VK 240
V+
Sbjct: 839 VE 840
>gi|448543659|ref|ZP_21625213.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
gi|448550751|ref|ZP_21629054.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
gi|448558948|ref|ZP_21633269.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
gi|445706382|gb|ELZ58265.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-646]
gi|445711256|gb|ELZ63050.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-645]
gi|445711789|gb|ELZ63577.1| DNA-directed RNA polymerase subunit A' [Haloferax sp. ATCC BAA-644]
Length = 974
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|448597570|ref|ZP_21654495.1| DNA-directed RNA polymerase subunit A' [Haloferax alexandrinus JCM
10717]
gi|445739031|gb|ELZ90540.1| DNA-directed RNA polymerase subunit A' [Haloferax alexandrinus JCM
10717]
Length = 974
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|448573316|ref|ZP_21640900.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
14919]
gi|445719081|gb|ELZ70764.1| DNA-directed RNA polymerase subunit A' [Haloferax lucentense DSM
14919]
Length = 974
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|448622535|ref|ZP_21669229.1| DNA-directed RNA polymerase subunit A' [Haloferax denitrificans
ATCC 35960]
gi|445754617|gb|EMA06022.1| DNA-directed RNA polymerase subunit A' [Haloferax denitrificans
ATCC 35960]
Length = 974
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHY 824
>gi|448532890|ref|ZP_21621310.1| DNA-directed RNA polymerase subunit A' [Halorubrum hochstenium ATCC
700873]
gi|445706124|gb|ELZ58009.1| DNA-directed RNA polymerase subunit A' [Halorubrum hochstenium ATCC
700873]
Length = 970
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVDEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAME 137
R L CE +E
Sbjct: 445 PDGRRLKVTEKNCEELAEKVE 465
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IESAYDRVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|113957476|gb|ABI49117.1| RNA polymerase II largest subunit [Heterodermia vulgaris]
Length = 996
Score = 116 bits (290), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 205 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 264
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 265 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 318
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 135 AMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSF 194
A ES RL T PG + ET E+ + K L+ RD AG L N MA SGSKGS
Sbjct: 611 ATES-RLDTLPGMNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSKGST 669
Query: 195 INISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 670 INISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 720
Score = 42.0 bits (97), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IIP PA++KP LWTGKQI SL++ P NL KG Y
Sbjct: 476 IIPQPAVLKPTPLWTGKQIVSLVI------PAGLNL-VKGSDY 511
>gi|448605730|ref|ZP_21658356.1| DNA-directed RNA polymerase subunit A' [Haloferax sulfurifontis
ATCC BAA-897]
gi|445741756|gb|ELZ93255.1| DNA-directed RNA polymerase subunit A' [Haloferax sulfurifontis
ATCC BAA-897]
Length = 974
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 64/108 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHY 824
>gi|19112465|ref|NP_595673.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe
972h-]
gi|548817|sp|P36594.1|RPB1_SCHPO RecName: Full=DNA-directed RNA polymerase II subunit rpb1;
Short=RNA polymerase II subunit 1; Short=RNA polymerase
II subunit B1; AltName: Full=DNA-directed RNA polymerase
III largest subunit
gi|256599715|pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|256599727|pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
gi|5055|emb|CAA39916.1| RNA polymerase II large subunit [Schizosaccharomyces pombe]
gi|6018696|emb|CAB57941.1| RNA polymerase II large subunit Rpb1 [Schizosaccharomyces pombe]
Length = 1752
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + ++G+P +AK LTYPE V N L++LV NGPD+HPG
Sbjct: 354 SARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG 407
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
++ R + E + I+ + RL+ +PG + E+ EA + + L+ RD+AG++
Sbjct: 682 MKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEH 741
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L SN M +GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P
Sbjct: 742 SLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPE 801
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 802 SRGFIENSYLR 812
Score = 45.8 bits (107), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+PPP I+KPK LWTGKQI SLI+
Sbjct: 565 ILPPPVILKPKVLWTGKQILSLII 588
>gi|302696011|ref|XP_003037684.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
gi|300111381|gb|EFJ02782.1| hypothetical protein SCHCODRAFT_81059 [Schizophyllum commune H4-8]
Length = 1750
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +GIP MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 292 VVNEFEQLLQFHVATYMDNDIAGIPQAMQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDF 351
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ QVG+P +A LT+PERV N ++L+ LV NGP +PG
Sbjct: 352 SARTVITGDPNLELDQVGVPRSIAMNLTFPERVTPYNIDYLQTLVRNGPTTYPG 405
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + EL+ RD AGK L N M ++GSKGSFINISQM
Sbjct: 705 LKPMPGMTIRETFESKVNHELNKARDDAGKDAQDGLKDDNNVKQMVVAGSKGSFINISQM 764
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
CVGQQ++ GKR+P GF +R+LPHF K P S+G V+ +LR
Sbjct: 765 SVCVGQQSVEGKRIPFGFRHRTLPHFTKDDYSPESRGFVENSYLR 809
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQI S+++
Sbjct: 563 VPIPAILKPKPLWTGKQILSMVI 585
>gi|449303065|gb|EMC99073.1| hypothetical protein BAUCODRAFT_85149 [Baudoinia compniacensis UAMH
10762]
Length = 1789
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ +E + LQ H A +++++ +G+P +Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 306 VTEEFVQLLQFHVATYMDNDIAGVPRALQKSGRPVKSIRARLKSKEGRLRGNLMGKRVDF 365
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +AK LT+PE V+ N + L++LV NGP++HPG
Sbjct: 366 SARTVITGDPNLDLDQVGVPRSIAKTLTFPETVNAYNIQKLQELVRNGPNEHPG 419
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 66/113 (58%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
++ +E+ L+T PG + ET E+ L R++AG + N M SGSKG
Sbjct: 715 VKTVENNELETLPGMTIRETFESKAKSFLDNARNNAGDIAFNGMRACNNVGTMVQSGSKG 774
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
S N+SQM A VGQQ++ GKR+P GF R+LPHF K PAS+G V+ +LR
Sbjct: 775 SSTNVSQMTAAVGQQSLEGKRLPFGFKYRTLPHFPKDDYSPASRGFVENSYLR 827
Score = 40.4 bits (93), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI++PK +WTGKQI SL L
Sbjct: 575 VVPQPAILRPKPMWTGKQIISLAL 598
>gi|448434392|ref|ZP_21586202.1| DNA-directed RNA polymerase subunit A' [Halorubrum tebenquichense
DSM 14210]
gi|445685308|gb|ELZ37663.1| DNA-directed RNA polymerase subunit A' [Halorubrum tebenquichense
DSM 14210]
Length = 970
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/141 (43%), Positives = 85/141 (60%), Gaps = 4/141 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N + +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVAKEMTQTLNVTERNVDEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAME 137
R L CE +E
Sbjct: 445 PDGRRLKVTEKNCEELAEKVE 465
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IESAYDRVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|410906965|ref|XP_003966962.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Takifugu rubripes]
Length = 1628
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 300 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 359
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 360 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 413
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 715 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 774
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 775 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 822
Score = 45.1 bits (105), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ALWTGKQIFSLI+
Sbjct: 572 MPQPAILKPRALWTGKQIFSLII 594
>gi|448582587|ref|ZP_21646091.1| DNA-directed RNA polymerase subunit A' [Haloferax gibbonsii ATCC
33959]
gi|445732235|gb|ELZ83818.1| DNA-directed RNA polymerase subunit A' [Haloferax gibbonsii ATCC
33959]
Length = 974
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 91.3 bits (225), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|432920271|ref|XP_004079921.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like
[Oryzias latipes]
Length = 1599
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 300 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 359
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 360 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 413
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 715 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 774
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 775 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 822
Score = 42.7 bits (99), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQIFSLI+
Sbjct: 572 MPQPAILKPRPLWTGKQIFSLII 594
>gi|83320422|gb|ABC02838.1| RNA polymerase II largest subunit, partial [Batrachochytrium
dendrobatidis]
Length = 985
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/137 (44%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A ++N++ + +P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 202 IVNEFENLLQFHVATYMNNDIANLPQAMQKSGRPLKSIAARLKGKEGRLRGNLMGKRVDF 261
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I QVG+P +A+ LT+PE V N + L+Q+V NGP++HPG ++R
Sbjct: 262 SARTVITGDPNLSIDQVGVPRSIARNLTFPETVTPYNIDILQQMVQNGPNEHPGAKYVIR 321
Query: 117 AKERLLSEGYSKCEGYI 133
+ YSK G I
Sbjct: 322 DNGERVDLRYSKRGGDI 338
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 75/113 (66%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ ++ L+ PG + ++ E+++ +EL+ RD+AGK+ + L N M +SGSKG
Sbjct: 612 IQKAQTDTLEVLPGMTIRQSFESLVNQELNRARDNAGKSAEKSLKEYNNVKQMVVSGSKG 671
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF +R+LPHF + P S+G V+ +LR
Sbjct: 672 SFINISQMTACVGQQNVEGKRIPFGFKDRTLPHFTRDDHSPESRGFVENSYLR 724
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 28/50 (56%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ +L L +L + IIP PAI+KP LWT KQI SLIL
Sbjct: 447 KFSKRDTFLKRDLMMNLLMWVPDWDGIIPTPAILKPIPLWTAKQIISLIL 496
>gi|78100246|gb|ABB20924.1| RNA polymerase II largest subunit, partial [Tilletiaria anomala]
Length = 569
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G+P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 60 IISEFEQLLQFHIATYMDNDIAGMPQAMQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 119
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A+ LTYPERV N +L+QLV NGP + PG
Sbjct: 120 SARTVITGDPNLELDEVGVPKSIARNLTYPERVTPYNINYLQQLVRNGPTEWPG 173
Score = 94.7 bits (234), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 65/108 (60%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ E +I R++ +PG + E+ E + + L+ RD G +EL N M +
Sbjct: 462 EVEQFIDDARFDRMKPEPGMTIRESFETKVNRTLNKARDDVGSRAEKELPDWNNVKQMVI 521
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
+GSKGSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S
Sbjct: 522 AGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFSKDDFSPES 569
>gi|397135954|gb|AFO11472.1| RNA polymerase I, partial [Phaffomyces opuntiae]
Length = 871
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG 214
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+ +L + G + E+ E +++ L+ RD AG++ L N M +GSKGSFIN
Sbjct: 511 QQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFIN 570
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
I+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 571 IAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLR 619
>gi|389845820|ref|YP_006348059.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
33500]
gi|388243126|gb|AFK18072.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
33500]
Length = 976
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVATEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 452
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 453 PDGRRLKVTEKNCEELAEKVELG 475
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 719 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFAE 778
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G+++R+L H+ K + G
Sbjct: 779 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHYQKGDLSADAHGF 838
Query: 239 VK 240
V+
Sbjct: 839 VE 840
>gi|294495210|ref|YP_003541703.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
gi|292666209|gb|ADE36058.1| DNA-directed RNA polymerase, subunit A' [Methanohalophilus mahii
DSM 5219]
Length = 886
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F ++E SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 267 IIEDLWELLQYHLTTFFDNEVSGVPPARHRSGRPLKTLTQRLKGKEGRFRGSLSGKRVNF 326
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTV+SPDPNL I +VG+P +AK +T P RV N E ++ V G + HPG
Sbjct: 327 SARTVVSPDPNLSINEVGVPYQIAKHMTIPVRVISRNLEMMRAYVARGGETHPG 380
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 67/108 (62%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+A E+ L+ PG + ET+E I++ L RDH G L N ++MA SG++G
Sbjct: 681 IQAYEAKELEPLPGRTLAETIELKIMQSLGKARDHTGTIAGNHLGLENSAVIMAKSGARG 740
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S +N++QM ACVGQQA+ G+R+ G++ R+LPHFD+ + G VK
Sbjct: 741 SMLNLTQMAACVGQQAVRGERIRRGYEGRTLPHFDRGDLGADAHGFVK 788
>gi|448616560|ref|ZP_21665270.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
33500]
gi|445751215|gb|EMA02652.1| DNA-directed RNA polymerase subunit A' [Haloferax mediterranei ATCC
33500]
Length = 974
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVATEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 70/122 (57%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFAE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G+++R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHYQKGDLSADAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|37726869|gb|AAO38801.1| DNA-dependent RNA polymerase II largest subunit [Gregarina
niphandrodes]
Length = 1020
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPL-NMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A F+N+E G+P+ + K + + +RLKGK+GR RGNL GKRVDF
Sbjct: 212 VVQETVAVLQYHVATFMNNEIPGLPVATTKSKKPMKSIRERLKGKEGRLRGNLMGKRVDF 271
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQI QVG+P +A LTYPE V N E L++ V NGP PG
Sbjct: 272 SARTVITGDPNLQIDQVGVPRSIAMNLTYPELVTSMNLEMLRKAVSNGPSVWPG 325
Score = 104 bits (260), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 77/124 (62%), Gaps = 1/124 (0%)
Query: 116 RAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
R KE L + Y K + IR G+L+TQPG S E+ E + +EL+ R+ +G+ +
Sbjct: 614 RVKE-ALDDSYVKVDELIRLARQGKLETQPGKSLLESFENRVNQELNQAREASGRIAAEN 672
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N + M +GSKGS INISQ++ACVGQQ + GKR+P GF +RSLPHF + P S
Sbjct: 673 LTNKNNIISMVNAGSKGSTINISQIMACVGQQNVEGKRIPFGFQDRSLPHFLRHDYGPDS 732
Query: 236 KGNV 239
+G V
Sbjct: 733 RGFV 736
Score = 41.2 bits (95), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILK 331
K+ SR+ ++ + L + I+P P I KP+ LWTGKQ+ ++ILK
Sbjct: 458 KMTSRDTFIDRPIMMGLCLWVRDWDGILPAPVIYKPEKLWTGKQLITMILK 508
>gi|119514064|gb|ABL75805.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 358
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 83/114 (72%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VLDEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A++LTYPE V N E+L++LV+NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPISIARVLTYPETVTPFNLEYLRKLVINGPNEHPG 317
>gi|119514090|gb|ABL75818.1| RNA polymerase II largest subunit [Siphula ceratites]
Length = 353
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE + LQ H A ++++ +G+P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVQEFEQLLQYHVATLMDNDIAGLPQAMQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPG 317
>gi|399949936|gb|AFP65592.1| DNA-directed RNA polymerase II largest chain [Chroomonas
mesostigmatica CCMP1168]
Length = 1473
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 64/155 (41%), Positives = 95/155 (61%), Gaps = 6/155 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H ++N++ IP ++Q + + L +RL+GK+GR RGNL GKRVDF
Sbjct: 274 IINEHLNLLQYHIGSYMNNKVPNIPKSIQKSGRPIKSLAERLQGKEGRVRGNLMGKRVDF 333
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPN+ + +G+P +A LTYPE V N E LK+LVLNGP HPG A+
Sbjct: 334 SARTVITPDPNIPLDGIGVPWSIALNLTYPEIVTSFNFEKLKKLVLNGPIHHPG---ARY 390
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLE 154
+ ++G Y++ ++ L+ GC E L+
Sbjct: 391 VIKNDGSRLDLRYVKKLDEIPLEI--GCKVERHLQ 423
Score = 85.5 bits (210), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/80 (55%), Positives = 53/80 (66%)
Query: 161 LSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN 220
L+ RD AG + L SN M + GSKGSFINISQ+IACVGQQ I GKR+P FDN
Sbjct: 712 LNSARDKAGSIAQRCLLDSNNIKRMVMCGSKGSFINISQIIACVGQQNIEGKRIPLCFDN 771
Query: 221 RSLPHFDKFSKDPASKGNVK 240
R LPHF K + P ++G V+
Sbjct: 772 RCLPHFSKQNNGPETRGFVQ 791
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP P I+KP+ LWTGKQIFS+ L
Sbjct: 546 IPFPTILKPRILWTGKQIFSVFL 568
>gi|330507365|ref|YP_004383793.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
gi|328928173|gb|AEB67975.1| DNA-directed RNA polymerase subunit A' [Methanosaeta concilii GP6]
Length = 875
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++ SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 257 IIEDLWELLQYHVTTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPNL I +VG+P +A L+ P + N E +K V GPD+HPG + R
Sbjct: 317 SARTVISPDPNLSIGEVGVPMDIAMELSVPMIANSRNMEIVKTFVRRGPDRHPGVNYVTR 376
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+R + CE ++ G
Sbjct: 377 PDQRRVKVTDKNCEEVAEQIDIG 399
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 71/122 (58%)
Query: 105 LNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVI 164
++ D P + E K + I A +G L+ PG + +ETLE I++ L
Sbjct: 642 IDDEDIPPEAVDQIEETTRTAREKAQQLIEAYNAGELEPLPGRTLDETLEMRIMQTLGKA 701
Query: 165 RDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLP 224
RD AGK + L N +VMA+SG++GS +N++QM ACVGQQ++ G+R+ G+ R+LP
Sbjct: 702 RDTAGKIAGRYLGLDNSGVVMAVSGARGSMLNLTQMAACVGQQSVRGERIMRGYAGRTLP 761
Query: 225 HF 226
HF
Sbjct: 762 HF 763
>gi|448611014|ref|ZP_21661648.1| DNA-directed RNA polymerase subunit A' [Haloferax mucosum ATCC
BAA-1512]
gi|445743446|gb|ELZ94927.1| DNA-directed RNA polymerase subunit A' [Haloferax mucosum ATCC
BAA-1512]
Length = 974
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H FI++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFIDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + +Q V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVATEMTQTMNVTERNIDEARQYVRNGPESHPGANYVRR 450
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 451 PDGRRLKVTEKNCEELAEKVELG 473
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 69/122 (56%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + Y K + I E+G L++ PG S +ETLE I++ L RD AG+
Sbjct: 717 DEAIDAAYDKIQELIEIYEAGELESLPGRSVDETLEMKIMQRLGKARDSAGEIAEDHFEE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VM+ SG++ S +N++QM CVGQQA+ G+R+ G++ R+L H+ K + G
Sbjct: 777 DNPAVVMSKSGARASMLNLTQMAGCVGQQAVRGERINRGYEGRTLSHYQKGDLSAEAHGF 836
Query: 239 VK 240
V+
Sbjct: 837 VE 838
>gi|169806355|ref|XP_001827922.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
gi|161778990|gb|EDQ31017.1| DNA-directed RNA polymerase II largest subunit [Enterocytozoon
bieneusi H348]
Length = 1541
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H + IN+E SG P+ MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 259 IIRDYEQLLQFHLSTLINNEISGQPIAMQKSGRPIKSISARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++R+VI+PDP +++ +VG+P H+A I T+PE+V+ N L+++V NGP ++PG
Sbjct: 319 SARSVITPDPAIELDEVGVPLHIAMIQTFPEKVNSININTLQKMVNNGPTEYPG 372
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Query: 111 HPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
+P ++ + ++ + I + G+L+ PG + E T E+ + L+ RD+ G+
Sbjct: 636 NPEIIEDCKSNIANAIHNVDELINMAKLGKLEKLPGLTIENTFESKVNLILNKARDYKGE 695
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
L N M LSGSKGS INI+QM +CVGQQ + GKR+P GF+ R+LPHF KF
Sbjct: 696 ITL-----CNNMNAMILSGSKGSKINIAQMTSCVGQQNVEGKRIPFGFEKRTLPHFQKFD 750
Query: 231 KDPASKG 237
S+G
Sbjct: 751 YSAISRG 757
>gi|448476273|ref|ZP_21603437.1| DNA-directed RNA polymerase subunit A' [Halorubrum aidingense JCM
13560]
gi|445815822|gb|EMA65741.1| DNA-directed RNA polymerase subunit A' [Halorubrum aidingense JCM
13560]
Length = 970
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 325 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 384
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N E +Q V NGP+ HPG + R
Sbjct: 385 SARTVISPDPTLSLNEVGVPDRVATEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 444
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 445 PDGRRLKVTEKNCEELAEKVEA 466
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG+ Q N
Sbjct: 714 IESAYERVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGEIADQHFGDDNP 773
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 774 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 818
>gi|397135802|gb|AFO11396.1| RNA polymerase I, partial [Wickerhamomyces canadensis]
Length = 871
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG 214
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/109 (43%), Positives = 67/109 (61%), Gaps = 2/109 (1%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
+ +L + G + E+ E +++ L+ RD AG++ L N M +GSKGSFIN
Sbjct: 511 QQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKGLNNVKQMVSAGSKGSFIN 570
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
I+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 571 IAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLR 619
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQ+ S+ +
Sbjct: 372 VIPQPAILKPKPLWTGKQLLSVAI 395
>gi|394998767|gb|AFN44302.1| RNA polymerase II largest subunit, partial [Megaloblastenia
marginiflexa]
Length = 355
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 VVQEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|91095991|gb|AAW56763.2| RNA polymerase II largest subunit [Hygrophoropsis aurantiaca]
Length = 991
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 206 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 265
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 266 SARTVITGDPNLQLDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG 319
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 69/106 (65%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + E+ E+ + +EL+ RD +G+ + L N M ++GSKGS+INISQ
Sbjct: 618 RLKAMPGMTIRESFESKVERELNRARDTSGRYAQENLKEDNNVKQMVVAGSKGSYINISQ 677
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ++ G+R+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 678 MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 723
Score = 41.6 bits (96), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQI SL++
Sbjct: 477 VPTPAIIKPKPLWTGKQILSLVI 499
>gi|320580596|gb|EFW94818.1| RNA polymerase II largest subunit [Ogataea parapolymorpha DL-1]
Length = 1730
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 290 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 349
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P+ +AK+L+YPE V N + L +LV NGP++HPG
Sbjct: 350 SARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEHPG 403
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + I + L+ +PG + E+ E + K L+ RD AGK+ L SN M
Sbjct: 689 KVQEVIMDAQKNLLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVT 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K SKG V+ +LR
Sbjct: 749 AGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLR 806
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LW+GKQ+ S+ +
Sbjct: 561 VVPQPAILKPKPLWSGKQVLSMCI 584
>gi|397135804|gb|AFO11397.1| RNA polymerase I, partial [Cyberlindnera americana]
Length = 870
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 100 VINEFEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 159
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG
Sbjct: 160 SARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIQKLTELVRNGPNEHPG 213
Score = 90.9 bits (224), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 2/133 (1%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
G ++ ++ K E + +L + G + E+ E +++ L+ RD AG++
Sbjct: 486 GTMKEITEAIAIAKEKVEEVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSA 545
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L N M +GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K
Sbjct: 546 EVNLKGLNNVKQMVSAGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYS 605
Query: 233 PASKGNVK--FLR 243
P SKG V+ +LR
Sbjct: 606 PESKGFVENSYLR 618
>gi|361124608|gb|EHK96688.1| putative DNA-directed RNA polymerase II subunit rpb1 [Glarea
lozoyensis 74030]
Length = 1727
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 299 ILSDFEALLQYHVATYMDNDIAGTPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N HL +LV NGP+ HPG
Sbjct: 359 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNINHLSKLVRNGPNDHPG 412
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 68/108 (62%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L++ PG + ET E+++ K L+ RD AG L SN + MA SGSKGS INI
Sbjct: 710 ANELESLPGMNVRETFESLVSKALNTARDKAGTKTEDSLKDSNNAVQMARSGSKGSTINI 769
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 770 SQMTALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 817
Score = 39.3 bits (90), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 6/42 (14%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRA 348
+IP PAI+KP+ WTGKQI S+I+ P NL T A
Sbjct: 570 VIPQPAILKPRPRWTGKQIVSMII------PKIVNLHTANDA 605
>gi|402218945|gb|EJT99020.1| subunit of DNA dependent RNA-polymerase [Dacryopinax sp. DJM-731
SS1]
Length = 1770
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++++E +G P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 301 VVSEIEQLLQFHVATYMDNEIAGQPRAMQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ + +VG+P +A LTYPERV N E L +LV NGP ++PG
Sbjct: 361 SARTVITGDPNIALDEVGVPRSIAMTLTYPERVTKYNLERLTELVRNGPVEYPG 414
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 68/107 (63%), Gaps = 2/107 (1%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
G L+ +PG + E+ EA + L+ +RD +GK+ Q L N M +GSKGSFINIS
Sbjct: 710 GLLKPRPGMTIRESFEASVNGILNQVRDKSGKSAQQSLKRDNNVKTMVTAGSKGSFINIS 769
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
QM A VGQQ + G+R+P GF +R+LPHF K P S+G V+ +LR
Sbjct: 770 QMSAMVGQQNVEGQRIPFGFKHRTLPHFTKDDFSPESRGFVENSYLR 816
>gi|394998769|gb|AFN44303.1| RNA polymerase II largest subunit, partial [Megalospora
tuberculosa]
Length = 355
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 VVQEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|397135969|gb|AFO11479.1| RNA polymerase I, partial [Trigonopsis variabilis]
Length = 871
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 86/138 (62%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VVNEFETLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + +VG+P +AK LTYPE V N L +LV NGPD+HPG ++R
Sbjct: 161 SARTVITGDPNLALDEVGVPRSIAKTLTYPEMVTPYNIHKLSELVRNGPDEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIR 134
+ Y K G IR
Sbjct: 221 DTGERIDLRYHKRAGDIR 238
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E + + I + L +PG + E+ E + + L+ RD AG++
Sbjct: 489 MRHITKTIDEAKQQVQNLINEAQHNVLAPEPGMTLRESFEHKVSRALNQARDTAGRSAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M ++GSKGSFINISQM ACVGQQ + GKR+P GF +R+LPHF K P
Sbjct: 549 SLKNDNNVKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFKDRTLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG ++ +LR
Sbjct: 609 SKGFIENSYLR 619
Score = 46.2 bits (108), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 22/24 (91%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
IIPPPA++KPK LWTGKQI S+++
Sbjct: 372 IIPPPAVLKPKPLWTGKQILSMVI 395
>gi|47214041|emb|CAG00699.1| unnamed protein product [Tetraodon nigroviridis]
Length = 1745
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 123 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 182
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 183 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 236
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 585 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 644
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 645 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 692
Score = 45.1 bits (105), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ALWTGKQIFSLI+
Sbjct: 442 MPQPAILKPRALWTGKQIFSLII 464
>gi|394998759|gb|AFN44298.1| RNA polymerase II largest subunit, partial [Ioplaca pindarensis]
Length = 355
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|213404374|ref|XP_002172959.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
gi|212001006|gb|EEB06666.1| DNA-directed RNA polymerase II subunit RPB1 [Schizosaccharomyces
japonicus yFS275]
Length = 1748
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + ++G+P +AK LTYPE V N L++LV NGPD+HPG
Sbjct: 354 SARTVITGDPNLSLDELGVPRTIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG 407
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/113 (47%), Positives = 72/113 (63%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ + RL+ +PG + ET EA + + L+ RD+AG++ L SN M SGSKG
Sbjct: 700 IKDAQQNRLKPEPGMTLRETFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVASGSKG 759
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G ++ +LR
Sbjct: 760 SFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLR 812
Score = 44.7 bits (104), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPP I+KPK LWTGKQI SL++
Sbjct: 565 VVPPPVILKPKPLWTGKQILSLVI 588
>gi|13274164|emb|CAC33861.1| RNA polymerase II largest subunit [Pleistophora hippoglossoideos]
Length = 1093
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A +++ +G+P ++Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 229 IIRDYESLLQYHVATLMDNNIAGLPQSLQKSGRPLKNISARLKGKEGRVRGNLMGKRVDF 288
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++R+VISPD N+ + +VG+PE +AKI T+PERV N E L ++V NGP++ PG
Sbjct: 289 SARSVISPDSNISLVEVGVPEAIAKIHTFPERVTGFNNERLGRMVRNGPNRWPG 342
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 3/122 (2%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
R + E + IR GRL+ PG ET EA I + L+ RD +GK + L
Sbjct: 666 RSIKESKEEVNRLIRVAREGRLKKMPGMGLRETFEARISQTLNKARDVSGKNASESLEAE 725
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN-RSLPHFDKFSKDPASKGN 238
N +M ++GSKGS INISQ+ ACVGQQ + G R+ F N R+LPHF K S+G
Sbjct: 726 NNVRMMVMAGSKGSLINISQVTACVGQQNVEGHRIS--FSNQRTLPHFHKDDNRAESRGF 783
Query: 239 VK 240
V+
Sbjct: 784 VE 785
>gi|113707386|gb|ABI36592.1| RNA polymerase II largest subunit [Megalospora tuberculosa]
Length = 372
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 210 VVQEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 269
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 270 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 323
>gi|406603917|emb|CCH44586.1| DNA-directed RNA polymerase II subunit [Wickerhamomyces ciferrii]
Length = 1688
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 247 VINEFESLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 306
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P+ +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 307 SARTVISGDPNLELDQVGVPKSIARTLTYPETVTPYNIHKLTELVRNGPNEHPG 360
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + + +L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 648 KVDDVTLEAQQNKLTAKHGMTLRESFEDNVIRYLNEARDKAGRSAEVNLKSLNNVKQMVS 707
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 708 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFAKDDYSPESKGFVENSYLR 765
>gi|405965007|gb|EKC30438.1| DNA-directed RNA polymerase II subunit RPB1 [Crassostrea gigas]
Length = 3055
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A F ++E G+P +Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 295 IISEDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDF 354
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ +T+PE V N + +++LV G +++PG
Sbjct: 355 SARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPG 408
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E ++ + L+ RD G + L N M ++GSKG
Sbjct: 710 IEKAHNDDLEPTPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKG 769
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IACVGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 770 SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVE 817
Score = 44.7 bits (104), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KPK LWTGKQ+FSL++ +C
Sbjct: 567 VPQPAILKPKPLWTGKQLFSLVIPGRTNC 595
>gi|429191196|ref|YP_007176874.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|448326613|ref|ZP_21515962.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
gi|429135414|gb|AFZ72425.1| DNA-directed RNA polymerase subunit A'' [Natronobacterium gregoryi
SP2]
gi|445610905|gb|ELY64670.1| DNA-directed RNA polymerase subunit A' [Natronobacterium gregoryi
SP2]
Length = 974
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 330 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 389
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 390 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEKARRFVSNGPEGHPGANYVRR 449
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 450 PDGRRLKVTEKNCEQLAEKVKAG 472
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + Y + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 716 DETIDDAYDRVEELIEAYERGELESLPGRTVDETLEMKIMQTLSRARDNAGNIADEHFTD 775
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L H+
Sbjct: 776 DNPAVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHY 823
>gi|336364350|gb|EGN92710.1| hypothetical protein SERLA73DRAFT_98944 [Serpula lacrymans var.
lacrymans S7.3]
Length = 1741
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 297 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 356
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 357 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG 410
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K G I RL+ PG + E+ E+ + +EL++ RD G+ + L N M +
Sbjct: 697 KVAGIIDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVV 756
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINISQM CVGQQ++ G+R+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 757 AGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 814
Score = 38.5 bits (88), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P P+I+KPK LWTGKQI S+++
Sbjct: 568 VPIPSIIKPKPLWTGKQILSMVI 590
>gi|123979340|gb|ABM81495.1| RNA polymerase II largest subunit [Tornabea scutellifera]
Length = 993
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 316
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 67/111 (60%), Gaps = 3/111 (2%)
Query: 135 AMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSF 194
A ES RL T PG + ET E+ + K L+ RD AG L N MA SGSKGS
Sbjct: 609 ATES-RLDTLPGMNVRETFESRVSKALNKARDDAGTVTEDSLKDLNNATQMARSGSKGST 667
Query: 195 INISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 668 INISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 718
Score = 43.1 bits (100), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 27/43 (62%), Gaps = 7/43 (16%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
IIP PA++KPK LWTGKQI SL++ P NL KG Y
Sbjct: 474 IIPQPAVLKPKPLWTGKQIVSLVI------PSGLNL-VKGSDY 509
>gi|448330661|ref|ZP_21519940.1| DNA-directed RNA polymerase subunit A' [Natrinema versiforme JCM
10478]
gi|445611165|gb|ELY64925.1| DNA-directed RNA polymerase subunit A' [Natrinema versiforme JCM
10478]
Length = 975
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSMNEVGVPDRVAKEMTQTMNVTERNVADARRFVSNGPEGHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E+G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKIEAG 474
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 74/117 (63%), Gaps = 1/117 (0%)
Query: 112 PGLLRAK-ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
PG +A+ + +++ + E I A E+ L++ PG + +ETLE I++ LS RD+AG
Sbjct: 710 PGEAQARIDETIADANDRVEELIEAYENNELESLPGRTIDETLEMKIMQSLSRARDNAGN 769
Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H++
Sbjct: 770 IADEHFQDDNPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHYE 826
>gi|336378579|gb|EGO19737.1| DNA-directed RNA polymerase II, subunit 1 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1744
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 300 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 359
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 360 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG 413
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 50/118 (42%), Positives = 72/118 (61%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K G I RL+ PG + E+ E+ + +EL++ RD G+ + L N M +
Sbjct: 700 KVAGIIDDATHDRLKAAPGMTIRESFESKVQRELNLARDDCGQYAQKSLKEDNNVKQMVV 759
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINISQM CVGQQ++ G+R+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 760 AGSKGSFINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 817
Score = 38.5 bits (88), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/23 (60%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P P+I+KPK LWTGKQI S+++
Sbjct: 571 VPIPSIIKPKPLWTGKQILSMVI 593
>gi|113957514|gb|ABI49120.1| RNA polymerase II largest subunit [Anaptychia palmatula]
Length = 1020
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QL+ NGP++HPG
Sbjct: 288 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLIKNGPNEHPG 341
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/134 (42%), Positives = 76/134 (56%), Gaps = 6/134 (4%)
Query: 116 RAKERLLSEGYSKCEGYIRAME----SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
R RL+ E +K + + + + L+T PG + ET E+ + K L+ RD+AG
Sbjct: 610 RETIRLIEEAVTKKKDEVAVITKEATNSTLETLPGMNIRETFESKVSKALNSARDNAGTV 669
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K
Sbjct: 670 TEDSLKDLNNATQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDY 729
Query: 232 DPASKGNVK--FLR 243
P S+G V+ +LR
Sbjct: 730 SPESRGFVENSYLR 743
Score = 41.2 bits (95), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
IIP PAI+KP +WTGKQI SLI+
Sbjct: 499 IIPQPAILKPTPVWTGKQIVSLII 522
>gi|119643792|gb|ABL85588.1| RNA polymerase II largest subunit [Physconia muscigena]
Length = 391
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 229 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 288
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QL+ NGP++HPG
Sbjct: 289 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLIKNGPNEHPG 342
>gi|335438708|ref|ZP_08561444.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
gi|334890830|gb|EGM29090.1| DNA-directed RNA polymerase subunit A [Halorhabdus tiamatea SARL4B]
Length = 996
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 358 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 417
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V+ N +Q V NGP+ HPG + R
Sbjct: 418 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVNERNLAEARQYVANGPESHPGANYVRR 477
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 478 PDGRRLKVTEKNCEELAEKVEPG 500
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 71/129 (55%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P + + + Y + + I E+G L++ PG + +ETLE I++ L RD AG
Sbjct: 736 PAAVEQVDEAIESAYDRVQELIETYEAGELESLPGRTVDETLEMKIMQTLGQARDSAGDI 795
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L HF+
Sbjct: 796 AEDHFASDNPAVVMADSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHFEANDL 855
Query: 232 DPASKGNVK 240
+ G V+
Sbjct: 856 SAEAHGFVE 864
>gi|12642612|gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 78/113 (69%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
+ E LQ H +N++ G+P Q + + + QRLKGK+GR RGNL GKRVDF+
Sbjct: 275 LNEQIHVLQAHIITIMNNDLPGMPRAHQKSGRPIKSISQRLKGKEGRVRGNLMGKRVDFS 334
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ QVG+P+ +A LTYPE V N E +++LV+NGP+++PG
Sbjct: 335 GRTVISPDPNLRLDQVGVPQTIAMNLTYPEVVTPFNVEKMRRLVMNGPNEYPG 387
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 72/125 (57%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
++++ + + +R + G LQ PG + E+ E + K L+ RD +G + L +N
Sbjct: 670 IINKAKEEVKRLVRKAQEGELQLLPGKTMMESFETGVNKVLNGARDKSGSDAQKSLLKTN 729
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M +GSKGSFINISQ+ ACVGQQ + GKR+ GF R+LPHF P S+G V+
Sbjct: 730 NIKRMVNAGSKGSFINISQICACVGQQNVEGKRISYGFRRRTLPHFVLDDLGPESRGFVE 789
Query: 241 --FLR 243
+LR
Sbjct: 790 NSYLR 794
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 30/39 (76%), Gaps = 2/39 (5%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
V++ L FR + +IPPPAI+KP+ LWTGKQ+FS+IL
Sbjct: 532 VMNLLLHFRGWDG--VIPPPAILKPRQLWTGKQLFSMIL 568
>gi|222478544|ref|YP_002564781.1| DNA-directed RNA polymerase subunit A' [Halorubrum lacusprofundi
ATCC 49239]
gi|222451446|gb|ACM55711.1| DNA-directed RNA polymerase subunit A' [Halorubrum lacusprofundi
ATCC 49239]
Length = 975
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 85/142 (59%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFVDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N E +Q V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAMEMTQTLNVTERNVEEARQYVRNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 452 PDGRRLKVTEKNCEELAEKVEA 473
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 63/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+G L++ PG +ETLE I++ L RD AG Q N
Sbjct: 721 IESAYDRVQELIATYEAGELESLPGRGVDETLEMKIMQTLGKARDSAGDIADQHFGDDNP 780
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 781 AVVMARSGARGSMLNLTQMAGSVGQQAVRGERINRGYEDRTLSHY 825
>gi|448737566|ref|ZP_21719606.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
gi|445803710|gb|EMA53993.1| DNA-directed RNA polymerase subunit A' [Halococcus thailandensis
JCM 13552]
Length = 985
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
++RTVISPDP L + +VG+PE VA+ +T V+ N E +Q V NG + HPG R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVNEQNIEEARQYVRNGSEAHPGANR 449
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 65/105 (61%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+ L++ PG + +ETLE I++ L RD AG + N
Sbjct: 728 MENAYERVQELIDTYENDDLESLPGRTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNP 787
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+++R+L HF
Sbjct: 788 AVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEDRTLSHF 832
>gi|448725404|ref|ZP_21707862.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
gi|445798521|gb|EMA48924.1| DNA-directed RNA polymerase subunit A' [Halococcus morrhuae DSM
1307]
Length = 985
Score = 115 bits (288), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 78/117 (66%), Gaps = 1/117 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
++RTVISPDP L + +VG+PE VA+ +T V+ N E +Q V NG + HPG R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAREMTQTMNVNEQNIEEARQYVRNGSEAHPGANR 449
Score = 90.9 bits (224), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+ L++ PG + +ETLE I++ L RD AG + N
Sbjct: 728 MDNAYERVQELIDTYENDDLESLPGRTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNP 787
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA SG++GS +N++QM ACVGQQA+ G+R+ G++ R+L HF
Sbjct: 788 AVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEGRTLSHF 832
>gi|123979324|gb|ABM81487.1| RNA polymerase II largest subunit [Cladonia stipitata]
Length = 984
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + LI+ RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKLIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P VA+ LTYPE V N L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDHPG 317
Score = 92.8 bits (229), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 53/138 (38%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ G + + +++ + E ++ + L++ PG + +T E+ + L+ R+
Sbjct: 587 PDR--GTINRIKTVVNAQKQEVEEITQSAQLNELESLPGMNVRDTFESKVSNALNKAREE 644
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AGK + L N + MA SGSKG+ INISQM A VGQQ++ GKR+P GF RSLPHF
Sbjct: 645 AGKVTEESLKDVNNAIQMARSGSKGTNINISQMTAVVGQQSVEGKRIPFGFKYRSLPHFA 704
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 705 KDDYSPESRGFVENSYLR 722
Score = 41.6 bits (96), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ +WTGKQI SL++
Sbjct: 475 VIPQPAIIKPRPMWTGKQILSLVI 498
>gi|397135806|gb|AFO11398.1| RNA polymerase I, partial [Ogataea angusta]
Length = 866
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/157 (41%), Positives = 95/157 (60%), Gaps = 12/157 (7%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK+L+YPE V N + L +LV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIAKVLSYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETL 153
+ Y+K +G +Q Q G E L
Sbjct: 221 DSGDRIDLRYNK--------RAGDIQLQYGWKVERHL 249
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 69/118 (58%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + I + L+ +PG + E+ E + K L+ RD AGK+ L SN M
Sbjct: 500 KVQEVIMDAQKNLLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVT 559
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K SKG V+ +LR
Sbjct: 560 AGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLR 617
Score = 38.5 bits (88), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LW+GKQ+ S+ +
Sbjct: 372 VVPQPAILKPKPLWSGKQVLSMCI 395
>gi|393219057|gb|EJD04545.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Fomitiporia mediterranea MF3/22]
Length = 1782
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 333 VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L+ LV NGP ++PG
Sbjct: 393 SARTVITGDPNLELDEVGVPRSIAMTLTYPERVTPYNIAYLQGLVRNGPREYPG 446
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 73/113 (64%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
+ S RL+ PG + E+ E+ + +EL++ RDH+G+ + L N M ++GSKG
Sbjct: 738 VEDASSDRLKAAPGMTIRESFESRVERELNLARDHSGQYAQKNLKEDNNVKQMVVAGSKG 797
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM CVGQQ++ GKR+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 798 SFINISQMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 850
>gi|448664667|ref|ZP_21684305.1| DNA-directed RNA polymerase subunit A' [Haloarcula amylolytica JCM
13557]
gi|445774254|gb|EMA25275.1| DNA-directed RNA polymerase subunit A' [Haloarcula amylolytica JCM
13557]
Length = 969
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPGANYVKR 448
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 449 PDGRRLKVTEKNCEELAEKVEA 470
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|324120590|dbj|BAJ78686.1| RNA polymerase II largest subunit [Panorpa takenouchii]
Length = 1725
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E+ + LQ H A F++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 293 VITENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKSRLKGKEGRIRGNLMGKRVDF 352
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N E +++LV G ++PG
Sbjct: 353 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNLERMQELVRRGNSQYPG 406
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TV++ L+ + +GI + +A TY E + ++ K
Sbjct: 657 GRFYGNI---------QTVVNHWLLLEGHSIGIGDTIADPQTYME-IQNSIK-------- 698
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AKE ++ I+ + L+ PG + +T E + + L+ R
Sbjct: 699 ----------KAKEDVIE--------VIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 740
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 741 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 800
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 801 FIKDDYGPESRGFVE 815
Score = 42.7 bits (99), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KPK LWTGKQIFSLI+ N
Sbjct: 565 MPQPCILKPKPLWTGKQIFSLIIPGN 590
>gi|448680460|ref|ZP_21690777.1| DNA-directed RNA polymerase subunit A' [Haloarcula argentinensis
DSM 12282]
gi|445768904|gb|EMA19981.1| DNA-directed RNA polymerase subunit A' [Haloarcula argentinensis
DSM 12282]
Length = 969
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPGANYVKR 448
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 449 PDGRRLKVTEKNCEELAEKVEA 470
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|330040372|ref|XP_003239880.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
gi|327206805|gb|AEA38982.1| RNA polymerase III largest subunit [Cryptomonas paramecium]
Length = 1298
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 64/129 (49%), Positives = 81/129 (62%), Gaps = 6/129 (4%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M+ E+W LQ+ + ++NSE I L +GL QRLKGK+GRFRGNL GKRVDF
Sbjct: 270 MLVENWNMLQIEISRYMNSE---IFLTETNNKIHKGLYQRLKGKKGRFRGNLGGKRVDFC 326
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
+RTVISPDPNL + VGIP +A LT PE+V+ N E L++ V G K+PG A
Sbjct: 327 ARTVISPDPNLYLNYVGIPLQIALKLTLPEKVNKLNFERLQRSVYRGCYKYPG---ANFI 383
Query: 121 LLSEGYSKC 129
L +EG C
Sbjct: 384 LNTEGNKIC 392
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ-ELHPSNGPLVMALSGSKGSFINI 197
G Q S +E I K LS +RD GK+ L+ + +N + M SGSKGS +N+
Sbjct: 690 GLCQFIKRISVKENFHYKIYKILSTVRDTLGKSFLEAQSFKNNFSVNMVTSGSKGSMVNL 749
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSL 223
+QMI+CVGQQ+I + NR L
Sbjct: 750 AQMISCVGQQSIKNNYIHYSTFNRIL 775
>gi|119514110|gb|ABL75828.1| RNA polymerase II largest subunit [Lecidella euphorea]
Length = 356
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P H+A+ LTYPE V N + L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRHIARTLTYPETVTPYNIQKLHQLVKNGPNDHPG 317
>gi|119643929|gb|ABL85595.1| RNA polymerase II largest subunit [Xanthoria polycarpa]
Length = 1020
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 LIQEFESLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPG 336
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ ++ E +SE S R + +L++ PG S ET E+ + L+ R++
Sbjct: 611 PDRK--TIQGIEDAVSEQKSAVTEITRLATADQLESLPGMSIRETFESKVQAALNQAREN 668
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N + MALSGSKGS INISQM A VGQQA+ GKR+P GF R+LPHF
Sbjct: 669 AGTKTQESLKDLNNGVQMALSGSKGSTINISQMTAIVGQQAVEGKRIPFGFKYRTLPHFT 728
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 729 KDDYSPESRGFVENSYLR 746
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SLIL
Sbjct: 494 VIPQPAILKPQPRWTGKQIISLIL 517
>gi|55379095|ref|YP_136945.1| DNA-directed RNA polymerase subunit A' [Haloarcula marismortui ATCC
43049]
gi|55231820|gb|AAV47239.1| DNA-directed RNA polymerase subunit A [Haloarcula marismortui ATCC
43049]
Length = 969
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPGANYVKR 448
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 449 PDGRRLKVTEKNCEELAEKVEA 470
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|394998783|gb|AFN44310.1| RNA polymerase II largest subunit, partial [Xanthomendoza poeltii]
Length = 355
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPG 316
>gi|119643745|gb|ABL85586.1| RNA polymerase II largest subunit [Buellia stillingiana]
Length = 1002
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/114 (50%), Positives = 80/114 (70%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
I E++E LQ H A ++ ++T+G PL +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 IVEEFEGLLQFHVATYMINDTAGQPLALQKSGRPVKAIRSRLKGKEGRVRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIGKLHQLVRNGPNEHPG 336
Score = 74.7 bits (182), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 2/70 (2%)
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S
Sbjct: 671 LKDINNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPES 730
Query: 236 KGNVK--FLR 243
+G V+ +LR
Sbjct: 731 RGFVENSYLR 740
>gi|397135916|gb|AFO11453.1| RNA polymerase I, partial [Babjeviella inositovora]
Length = 872
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEIETLLQFHVATYMDNDIAGQPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P+ +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIHRLTELVRNGPNEHPG 214
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +SE K + I L+ +PG + E+ E + + L+ RD AG++
Sbjct: 489 MREITNTISEAKEKVQEIILLAHLNTLEPEPGMTLRESFENNVSRVLNQARDTAGRSAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M + GSKGSFINISQM ACVGQQ + G+R+P GF +R+LPHF K P
Sbjct: 549 NLKDLNNVKQMVVCGSKGSFINISQMSACVGQQIVEGRRIPFGFADRTLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 41.2 bits (95), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQ+ SL +
Sbjct: 372 VIPEPAILKPKPLWTGKQLLSLCI 395
>gi|394998741|gb|AFN44289.1| RNA polymerase II largest subunit, partial [Caloplaca chilensis]
Length = 355
Score = 115 bits (287), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFESLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|301628367|ref|XP_002943327.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like,
partial [Xenopus (Silurana) tropicalis]
Length = 1946
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 278 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 337
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 338 SARTVITPDPNLSIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 391
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 693 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 752
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 753 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 800
Score = 44.7 bits (104), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KP+ LWTGKQIFSLI+ + +C
Sbjct: 550 VPQPAILKPRPLWTGKQIFSLIVPGHINC 578
>gi|119514031|gb|ABL75788.1| RNA polymerase II largest subunit [Lecidella elaeochroma]
Length = 355
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P H+A+ LTYPE V N + L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRHIARTLTYPETVTPYNIQKLHQLVKNGPNDHPG 317
>gi|448350441|ref|ZP_21539254.1| DNA-directed RNA polymerase subunit A' [Natrialba taiwanensis DSM
12281]
gi|445636711|gb|ELY89871.1| DNA-directed RNA polymerase subunit A' [Natrialba taiwanensis DSM
12281]
Length = 975
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPG 445
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG
Sbjct: 713 AQERIDETIEDANDRVEELIEAYERGELESLPGRTLDETLEMKIMQTLSRARDNAGNIAD 772
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 773 EHFSDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|520509|gb|AAA50225.1| RNA polymerase II, largest subunit, partial [Crassostrea gigas]
Length = 1340
Score = 115 bits (287), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A F ++E G+P +Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 213 IISEDMKMLQYHVATFTDNELPGLPKAVQKSGRPLKSVKQRLKGKEGRVRGNLMGKRVDF 272
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ +T+PE V N + +++LV G +++PG
Sbjct: 273 SARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIDRMQELVRRGANQYPG 326
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 64/108 (59%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E ++ + L+ RD G + L N M ++GSKG
Sbjct: 628 IEKAHNDDLEPTPGNTLRQTFENMVNRILNDARDKTGSKAQKSLSDYNNFKAMVVAGSKG 687
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IACVGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 688 SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVE 735
Score = 45.1 bits (105), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KPK LWTGKQ+FSL++ +C
Sbjct: 485 VPQPAILKPKPLWTGKQLFSLVIPGRTNC 513
>gi|394998731|gb|AFN44284.1| RNA polymerase II largest subunit, partial [Brigantiaea cf.
tricolor Gaya 70]
Length = 355
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IVSEFEQLLQFHVATYMDNDVAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|409082995|gb|EKM83352.1| hypothetical protein AGABI1DRAFT_65857 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 1785
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 294 VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LT+PERV N +L++LV NGP +PG
Sbjct: 354 SARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPG 407
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ +PG + E+ E+++ ++L++ RD +G+ + L N M ++GSKGSFINISQ
Sbjct: 706 RLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQ 765
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ++ G+R+P GF +R+LPHF K P S+G V+ +LR
Sbjct: 766 MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLR 811
Score = 40.0 bits (92), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KPK LWTGKQI S+ +
Sbjct: 565 IPTPAILKPKPLWTGKQILSMTI 587
>gi|408381652|ref|ZP_11179200.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
gi|407815583|gb|EKF86153.1| DNA-directed RNA polymerase subunit A' [Methanobacterium formicicum
DSM 3637]
Length = 871
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 87/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDPN+ I +VG+P +A +T P V N E +K+ + NGP +HPG ++R
Sbjct: 317 SARTVISPDPNISINEVGVPLMIATEVTVPIYVTEWNIEDMKKYIRNGPKQHPGANYVIR 376
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R + E I +E G
Sbjct: 377 PDARKIRVYDETKEAIIEKLEPG 399
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 64/108 (59%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E LLS K E I A + L+ PG S ETLE I++ L RD +G+
Sbjct: 650 EELLSRAEQKVEMLIEAYHNDELEALPGRSLRETLEMKIMQVLGEARDKSGEIAESYFGM 709
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+ R+LPHF
Sbjct: 710 DNHAVIMALTGARGSMLNLTQIAACVGQQSVRGGRIERGYSKRTLPHF 757
>gi|257051867|ref|YP_003129700.1| DNA-directed RNA polymerase subunit A' [Halorhabdus utahensis DSM
12940]
gi|256690630|gb|ACV10967.1| DNA-directed RNA polymerase subunit A' [Halorhabdus utahensis DSM
12940]
Length = 1013
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 85/143 (59%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 375 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 434
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V+ N +Q V NGP+ HPG + R
Sbjct: 435 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVNERNLAEARQYVSNGPEAHPGANYVRR 494
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 495 PDGRRLKVTEKNCEELAEKVEPG 517
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 71/129 (55%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P E + Y + + I E G L++ PG + +ETLE I++ L RD AG
Sbjct: 753 PAAQEQVEEAIGSAYDRVQELIETYEQGDLESLPGRTVDETLEMKIMQTLGQARDSAGDI 812
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L HF++
Sbjct: 813 AEDHFAEDNPAVVMADSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFEENDL 872
Query: 232 DPASKGNVK 240
+ G V+
Sbjct: 873 SAEAHGFVE 881
>gi|121701053|ref|XP_001268791.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
gi|119396934|gb|EAW07365.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus clavatus NRRL 1]
Length = 1765
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 305 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 364
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N E L+QLV NGP++HPG
Sbjct: 365 SARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG 418
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E + E + E + L+ PG + ET E+ + + L+ RD AG + L
Sbjct: 702 ENCVRERKQEVEAITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKD 761
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 762 LNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 821
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 822 VENSYLR 828
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQ+ S+ L
Sbjct: 576 VIPPPAILKPRPRWTGKQMISMAL 599
>gi|397135850|gb|AFO11420.1| RNA polymerase I, partial [Saccharomycodes ludwigii]
Length = 871
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 12/154 (7%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQ+ + LQ H A +++++ +G P +Q + + + RLKGK+GR R NL GKRVDF
Sbjct: 101 VIQDIEKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRNNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+ RTVIS DPNL++ QVG+P +A+ LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 161 SGRTVISGDPNLELDQVGVPLSIARTLTYPEIVTPYNIDRLTQLVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAE 150
+ YSK +G +Q Q G E
Sbjct: 221 DNGTRIDLRYSK--------RTGDIQLQYGWKVE 246
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 KVEEVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRSAEVNLKDLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 619
>gi|170100352|ref|XP_001881394.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644073|gb|EDR08324.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 1742
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 354 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPTAYPG 407
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + E+ E+++ ++L++ RD +G+ + L N M ++GSKGSFINISQ
Sbjct: 706 RLKAAPGMTIRESFESLVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQ 765
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ++ G+R+P GF +R+LPHF K P S+G V+ +LR
Sbjct: 766 MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPESRGFVENSYLR 811
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQI SL +
Sbjct: 565 VPIPAILKPKPLWTGKQILSLAI 587
>gi|70996164|ref|XP_752837.1| DNA-dependent RNA polymerase II largest subunit [Aspergillus
fumigatus Af293]
gi|66850472|gb|EAL90799.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus Af293]
gi|159131590|gb|EDP56703.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus fumigatus A1163]
Length = 1750
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 303 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 362
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N E L+QLV NGP++HPG
Sbjct: 363 SARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG 416
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E + E + E + L+ PG + ET E+ + + L+ RD AG + L
Sbjct: 700 ENCVRERKKEVEAITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKD 759
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 760 LNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 819
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 820 VENSYLR 826
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQ+ S+ L
Sbjct: 574 VIPPPAILKPRPRWTGKQMISMAL 597
>gi|168920044|gb|AAV54050.2| RNA polymerase II largest subunit [Boletellus projectellus]
Length = 997
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 264 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIAYLQELVRNGPSTYPG 317
Score = 94.7 bits (234), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 49/134 (36%), Positives = 77/134 (57%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ R + + + I + RL+ PG + E+ E+ + +EL+ RD +G+
Sbjct: 588 PNVMEFITRRIKDKKQQVAEIIEDAYNDRLKPMPGMTIRESFESKVERELNRARDDSGQY 647
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L N M +GSKGS+INISQM CVGQQ++ G+R+P GF +R+LPHF K
Sbjct: 648 AQKNLKEDNNVKQMVTAGSKGSYINISQMSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDF 707
Query: 232 DPASKGNVK--FLR 243
P ++G V+ +LR
Sbjct: 708 SPEARGFVENSYLR 721
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQI S+++
Sbjct: 475 VPTPAIIKPKPLWTGKQIISMVI 497
>gi|119494984|ref|XP_001264289.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
gi|119412451|gb|EAW22392.1| DNA-dependent RNA polymerase II largest subunit, putative
[Neosartorya fischeri NRRL 181]
Length = 1750
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 303 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 362
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N E L+QLV NGP++HPG
Sbjct: 363 SARTVITGDPNLSLDEVGVPRSIARTLTYPEVVTPYNIEKLQQLVANGPNEHPG 416
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E + E + E + L+ PG + ET E+ + + L+ RD AG + L
Sbjct: 700 ENCVRERKKEVEAITASATENTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKD 759
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 760 LNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 819
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 820 VENSYLR 826
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQ+ S+ L
Sbjct: 574 VIPPPAILKPRPRWTGKQMISMAL 597
>gi|448411893|ref|ZP_21576249.1| DNA-directed RNA polymerase subunit A' [Halosimplex carlsbadense
2-9-1]
gi|445669827|gb|ELZ22435.1| DNA-directed RNA polymerase subunit A' [Halosimplex carlsbadense
2-9-1]
Length = 1004
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 364 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 423
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V+ N E ++ V NGP+ HPG + R
Sbjct: 424 SARTVISPDPTLSLNEVGVPDRVATEMTQTMNVNERNLEEAQRYVSNGPEAHPGANYVRR 483
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +E G
Sbjct: 484 HDGRRLKVTEKNCEELAEKVEPG 506
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + YS+ + I E+G L++ PG S +ETLE I+ LS RD AG
Sbjct: 749 DEAIDDAYSRVQKLIETYEAGELESLPGRSVDETLEMKIMSTLSKARDTAGDIAEDHFGD 808
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L H+
Sbjct: 809 ANPAVVMADSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHY 856
>gi|110669620|gb|ABG81905.1| RNA polymerase II largest subunit [Physcia aipolia]
Length = 1015
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 222 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 281
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 282 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 335
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 80/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ ++ E +SE ++ R + L++ PG S ET E+ + L+ R++
Sbjct: 604 PDRK--TIQGIENAVSEQKTEVTEITRKATADELESLPGMSIRETFESKVQAALNQAREN 661
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N + MALSGSKGS INISQM A VGQQA+ GKR+P GF R+LPHF
Sbjct: 662 AGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQAVEGKRIPFGFKYRTLPHFT 721
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 722 KDDYSPESRGFVENSYLR 739
Score = 39.3 bits (90), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ W+GKQI SL+L
Sbjct: 493 VIPQPAILKPRPRWSGKQIISLVL 516
>gi|448638073|ref|ZP_21676124.1| DNA-directed RNA polymerase subunit A' [Haloarcula sinaiiensis ATCC
33800]
gi|448655083|ref|ZP_21681935.1| DNA-directed RNA polymerase subunit A' [Haloarcula californiae ATCC
33799]
gi|445763959|gb|EMA15133.1| DNA-directed RNA polymerase subunit A' [Haloarcula sinaiiensis ATCC
33800]
gi|445765532|gb|EMA16670.1| DNA-directed RNA polymerase subunit A' [Haloarcula californiae ATCC
33799]
Length = 969
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEEARRYVSNGPEAHPG 442
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|426201955|gb|EKV51878.1| hypothetical protein AGABI2DRAFT_215454, partial [Agaricus bisporus
var. bisporus H97]
Length = 1800
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 294 VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKALRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LT+PERV N +L++LV NGP +PG
Sbjct: 354 SARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNITYLQELVRNGPTTYPG 407
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 72/106 (67%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ +PG + E+ E+++ ++L++ RD +G+ + L N M ++GSKGSFINISQ
Sbjct: 706 RLKPKPGMTIRESFESMVERQLNLARDTSGQYAQKHLKEDNNVKQMVVAGSKGSFINISQ 765
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ++ G+R+P GF +R+LPHF K P S+G V+ +LR
Sbjct: 766 MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFTPESRGFVENSYLR 811
Score = 40.0 bits (92), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KPK LWTGKQI S+ +
Sbjct: 565 IPTPAILKPKPLWTGKQILSMTI 587
>gi|394998733|gb|AFN44285.1| RNA polymerase II largest subunit, partial [Brigantiaea fuscolutea]
Length = 332
Score = 114 bits (286), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 180 IVSEFEQLLQFHVATYMDNDVAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 239
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 240 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 293
>gi|453086034|gb|EMF14076.1| DNA-dependent RNA polymerase II largest subunit [Mycosphaerella
populorum SO2202]
Length = 1780
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 88/138 (63%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ +E + LQ H A +++++ +G+P ++Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 301 ITEEFTQLLQYHVATYMDNDIAGLPKSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVDF 360
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + QVG+P A++LT+PERV N L +LV NGP +HPG ++R
Sbjct: 361 SARTVITGDPNLDLDQVGVPRSTARVLTFPERVTPYNIHKLSELVRNGPSEHPGAKHIIR 420
Query: 117 AKERLLSEGYSKCEGYIR 134
+ Y K G I+
Sbjct: 421 EDGSRIDLRYHKRAGEIQ 438
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 2/132 (1%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
++ A E+ + + + +GY+R ++S ++ PG + ET E+ L R++AG A
Sbjct: 690 MVLAIEQNIVKEKATVDGYMREVQSDEMEALPGMTIRETFESQTKAALDNARNNAGDAAY 749
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ + P N VM GSKGS N+SQM A VGQQ++ GKR+P GF +R LPHF K P
Sbjct: 750 KGMKPCNNVGVMVKGGSKGSTTNVSQMTAAVGQQSLEGKRLPFGFKDRVLPHFPKDDYSP 809
Query: 234 ASKGNVK--FLR 243
AS+G V+ +LR
Sbjct: 810 ASRGFVENSYLR 821
>gi|394998729|gb|AFN44283.1| RNA polymerase II largest subunit, partial [Brigantiaea cf.
leucoxantha Gaya 71]
Length = 355
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IVSEFEQLLQFHVATYMDNDVAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|336121472|ref|YP_004576247.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
gi|334855993|gb|AEH06469.1| DNA-directed RNA polymerase subunit A' [Methanothermococcus
okinawensis IH1]
Length = 888
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/115 (47%), Positives = 79/115 (68%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E G P + R + QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGTPPARHRSGRPLRTIAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VG+PE +AK LT PE+V N +++L+ NG +KHPG+
Sbjct: 324 SARTVISPDPCLSINEVGVPEKIAKELTVPEKVTRYNINKIRELLKNGSEKHPGV 378
Score = 92.4 bits (228), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 50/126 (39%), Positives = 71/126 (56%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
++ ++ L + E I+ E G L+ PG EE+ EA I++ L RD AGK +
Sbjct: 666 IKEIQKSLDRAEEQVEEIIKQYEEGTLEPLPGRGLEESREAYIMQILGKARDEAGKIAER 725
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N VMA +G++GS +NI+ M CVGQQA+ G RV G+ R+LPHF+K S
Sbjct: 726 YLSEDNHAAVMARTGARGSLLNITMMAGCVGQQAVRGGRVFRGYRGRTLPHFEKGSLSAK 785
Query: 235 SKGNVK 240
S G V+
Sbjct: 786 SHGFVR 791
>gi|119643486|gb|ABL85572.1| RNA polymerase II largest subunit [Candelariella reflexa]
Length = 989
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 210 VVQEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 269
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 270 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 323
Score = 94.4 bits (233), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L + PG + ET E+ + K L+ RD AG + L N MA SGSKGS
Sbjct: 616 RSATENELDSLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGS 675
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 676 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 727
Score = 42.7 bits (99), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK +WTGKQI SL++
Sbjct: 481 VIPQPAIIKPKPMWTGKQILSLVI 504
>gi|448320528|ref|ZP_21510014.1| DNA-directed RNA polymerase subunit A' [Natronococcus amylolyticus
DSM 10524]
gi|445605430|gb|ELY59352.1| DNA-directed RNA polymerase subunit A' [Natronococcus amylolyticus
DSM 10524]
Length = 975
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N E ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNVEEARRYVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVDAG 474
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 68/108 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIEDANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFTD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L H+
Sbjct: 778 ENPAVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHY 825
>gi|123979344|gb|ABM81497.1| RNA polymerase II largest subunit [Rhizocarpon superficiale]
Length = 991
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R L+ PG + ET E+ + K L+ RD AG + L N + MA SGSKGS
Sbjct: 620 RNATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEESLKDLNNAIQMARSGSKGS 679
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A GQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 680 TINISQMTAVAGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 731
Score = 42.0 bits (97), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI KP+ +WTGKQI SL++ N
Sbjct: 485 VIPHPAIFKPRPMWTGKQIISLVIPEN 511
>gi|408388091|gb|EKJ67784.1| hypothetical protein FPSE_12056 [Fusarium pseudograminearum CS3096]
Length = 1758
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF++RTVI
Sbjct: 309 ELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVI 368
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ D NL +++VG+P +A+ LTYPE V N E L QLV NGP++HPG
Sbjct: 369 TGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEHPG 416
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L+ PG + T E + L+ RD AG + L SN + MA SGSKGS INI
Sbjct: 714 ANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINI 773
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ + GKR+P GF R+LPHF K P ++G V+ +LR
Sbjct: 774 SQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLR 821
>gi|397135932|gb|AFO11461.1| RNA polymerase I, partial [Candida blankii]
Length = 872
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG
Sbjct: 161 SARTVITGDPNLELDQVGVPKSIARTLTYPEIVTPYNIQRLSELVRNGPNEHPG 214
Score = 104 bits (260), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +SE G+I +L+ G + ET E ++ L+ RD AGK+
Sbjct: 489 MRDITNAISEAKQAVAGFIEEAHQNKLKQAAGMTLRETFEQKVMVALNEARDQAGKSSQV 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 549 SLTEKNNVKQMVVSGSKGSFINISQMSACVGQQVVEGKRIPFGFADRSLPHFTKDDFGPE 608
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 609 SRGFIENSYLR 619
Score = 40.8 bits (94), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAI+KPK LWTGKQ+ SL +
Sbjct: 372 IVPQPAILKPKPLWTGKQMVSLTI 395
>gi|294610763|gb|ADF27173.1| RNA polymerase II largest subunit [Sirodesmium olivaceum]
Length = 331
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 189 LQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 248
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 249 DPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG 294
>gi|111154418|gb|ABH07423.1| RNA polymerase II largest subunit [Monascus purpureus]
Length = 382
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 220 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 279
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +AK LTYPE V N + L+QLV+NGP++HPG
Sbjct: 280 SARTVITGDPNLSLDEVGVPKSIAKTLTYPEVVTPYNIDKLQQLVMNGPNEHPG 333
>gi|448627103|ref|ZP_21671778.1| DNA-directed RNA polymerase subunit A' [Haloarcula vallismortis
ATCC 29715]
gi|445759731|gb|EMA11007.1| DNA-directed RNA polymerase subunit A' [Haloarcula vallismortis
ATCC 29715]
Length = 969
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTDRNLEEARRYVSNGPEAHPG 442
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|402469133|gb|EJW04187.1| hypothetical protein EDEG_01519 [Edhazardia aedis USNM 41457]
Length = 1093
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 57/105 (54%), Positives = 72/105 (68%), Gaps = 1/105 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+QEDW++LQL LFINS+ + RG++QRLKGK GRFRGNLSGKRVDF+
Sbjct: 321 LQEDWDFLQLQVNLFINSDLPNYN-KTENVQGIRGIVQRLKGKHGRFRGNLSGKRVDFSG 379
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLN 106
RTVISPDP L + +VG+P H+ KILT E V+ N + L L+ N
Sbjct: 380 RTVISPDPCLSVEEVGVPVHLCKILTVSEVVNVYNIDKLNALLNN 424
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 67/100 (67%), Gaps = 1/100 (1%)
Query: 126 YSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVM 185
Y +C+ I+ E G ++ PGC++ +TLE+ + LS IR+ G CL+ L N P++M
Sbjct: 959 YKECDDKIKLFEKGEIKCLPGCTSLQTLESNLSSLLSQIREECGSKCLKRLGCFNSPIIM 1018
Query: 186 ALSGSKGSFINISQMIACVGQQAINGKRVPNGF-DNRSLP 224
+GSKGS IN++QM+ACVGQQ I+GKR+ +GF N LP
Sbjct: 1019 QYAGSKGSKINVAQMVACVGQQIISGKRISDGFSSNIDLP 1058
>gi|344213107|ref|YP_004797427.1| DNA-directed RNA polymerase subunit A' [Haloarcula hispanica ATCC
33960]
gi|343784462|gb|AEM58439.1| DNA-directed RNA polymerase subunit A' [Haloarcula hispanica ATCC
33960]
Length = 969
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 62/142 (43%), Positives = 86/142 (60%), Gaps = 4/142 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLEKARRYVSNGPEAHPGANYVKR 448
Query: 117 AKERLLSEGYSKCEGYIRAMES 138
R L CE +E+
Sbjct: 449 PDGRRLKVTEKNCEELAEKVEA 470
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|46108068|ref|XP_381092.1| hypothetical protein FG00916.1 [Gibberella zeae PH-1]
Length = 1758
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF++RTVI
Sbjct: 309 ELLQYHVATYMDNDIAGQPRALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVI 368
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ D NL +++VG+P +A+ LTYPE V N E L QLV NGP++HPG
Sbjct: 369 TGDANLSLHEVGVPRSIARTLTYPETVTPYNIEKLHQLVENGPNEHPG 416
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L+ PG + T E + L+ RD AG + L SN + MA SGSKGS INI
Sbjct: 714 ANELEALPGMNVRATFENKVSMALNQARDKAGTTTQKSLKDSNNAVTMASSGSKGSSINI 773
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ + GKR+P GF R+LPHF K P ++G V+ +LR
Sbjct: 774 SQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDYSPEARGFVENSYLR 821
>gi|448683947|ref|ZP_21692567.1| DNA-directed RNA polymerase subunit A' [Haloarcula japonica DSM
6131]
gi|189332911|dbj|BAG41983.1| RNA polymerase subunit A [Haloarcula japonica]
gi|445783520|gb|EMA34349.1| DNA-directed RNA polymerase subunit A' [Haloarcula japonica DSM
6131]
Length = 969
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 329 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 388
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG
Sbjct: 389 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTDRNLEEARRYVSNGPEAHPG 442
Score = 94.4 bits (233), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 69/119 (57%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + E I + G L++ PG + +ETLE I++ L RD AG N
Sbjct: 718 IDSAYDRVEELIETYDRGELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFGEDNP 777
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
++MA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L HF++ + G V+
Sbjct: 778 AVIMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHFEENDLSADAHGFVE 836
>gi|120561233|gb|ABM27002.1| RNA polymerase II largest subunit, partial [Entophlyctis
confervae-glomeratae]
Length = 1013
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 92/154 (59%), Gaps = 6/154 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 215 IITEFENLLQYHVATYMDNDIAGIPAALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 274
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+ DP+L I QVG+P +A+ LT+PE V N ++Q+V NGP +HPG AK
Sbjct: 275 SARTVITGDPHLSIDQVGVPRSIARNLTFPETVTPYNIHKMQQMVQNGPTEHPG---AKY 331
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETL 153
+ +G Y R G + QPG E L
Sbjct: 332 VIKDDGQRIDLRYNR--RGGDIHLQPGYRVERHL 363
Score = 110 bits (275), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 56/124 (45%), Positives = 78/124 (62%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+++ +KC I+A ++G L+ PG S ET E+ I KEL+ RD AGK+ L N
Sbjct: 616 IAKSKAKCSEIIKAAQNGTLEGMPGLSVRETFESYITKELNTARDGAGKSAQMTLKEFNN 675
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGS+IN++QM ACVGQQ + G R+P GF RSLPHF K P ++G V+
Sbjct: 676 VKQMVVAGSKGSYINVAQMSACVGQQNVEGSRIPFGFKYRSLPHFTKDDHTPEARGFVEN 735
Query: 241 -FLR 243
+LR
Sbjct: 736 SYLR 739
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNA 340
K R+ +L L +L + IP PAI+KP LWTGKQI SLIL P
Sbjct: 460 KFTKRDTFLRQDLVMNLLMWVPDWDGTIPQPAIIKPVPLWTGKQIVSLIL------PAKI 513
Query: 341 NLKTKGRAYT 350
N+ AY
Sbjct: 514 NVTGMHTAYV 523
>gi|397135936|gb|AFO11463.1| RNA polymerase I, partial [Candida santjacobensis]
Length = 873
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P+ +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 161 SARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRLTQLVRNGPNEHPG 214
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +SE K + I ++ L +PG + E+ E + + L+ RD AG++
Sbjct: 489 MRDIANTISEAKQKVQEIILQAQANTLSPEPGMTLRESFEQNVSRVLNQARDTAGRSAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M ++GSKGSFINIS M ACVGQQ + G+R+P GF +RSLPHF K P
Sbjct: 549 SLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGRRIPFGFADRSLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LWTGKQ+ SL +
Sbjct: 372 VVPQPAILKPKPLWTGKQMASLCI 395
>gi|324120592|dbj|BAJ78687.1| RNA polymerase II largest subunit [Ctenocephalides felis]
Length = 1749
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E+ + LQ H A F++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 293 VITENIKMLQFHVATFVDNDMPGMPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDF 352
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ +T+PE V N E +++LV G ++PG
Sbjct: 353 SARTVITPDPNLRIDQVGVPRSIAQNMTFPELVTPFNIERMQELVRRGNSQYPG 406
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TV++ L+ + +GI + +A TY E + A K
Sbjct: 657 GRFYGNI---------QTVVNNWLLLEGHSIGIGDTIADPQTYME-IQRAIK-------- 698
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AKE ++ I+ + L+ PG + +T E + + L+ R
Sbjct: 699 ----------KAKEDVIE--------VIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 740
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 741 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 800
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 801 FIKDDYGPESRGFVE 815
Score = 41.6 bits (96), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KPK LWTGKQIF+LI+ N
Sbjct: 565 MPQPCILKPKPLWTGKQIFTLIIPGN 590
>gi|195168657|ref|XP_002025147.1| GL26742 [Drosophila persimilis]
gi|194108592|gb|EDW30635.1| GL26742 [Drosophila persimilis]
Length = 1804
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|448711917|ref|ZP_21701460.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
JCM 10879]
gi|445791002|gb|EMA41651.1| DNA-directed RNA polymerase subunit A' [Halobiforma nitratireducens
JCM 10879]
Length = 975
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 61/134 (45%), Positives = 83/134 (61%), Gaps = 4/134 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 331 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 390
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N E ++ V NGP+ HPG + R
Sbjct: 391 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNVEKARRFVSNGPEGHPGANYVRR 450
Query: 117 AKERLLSEGYSKCE 130
R L CE
Sbjct: 451 PDGRRLKVTEKNCE 464
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 69/108 (63%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + Y + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 717 DETIDDAYDRVEELIEAYERGELESLPGRTVDETLEMKIMQTLSRARDNAGNIADEHFTE 776
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM CVGQQA+ G+R+ G++NR+L H+
Sbjct: 777 ENPAVVMAESGARGSMLNLTQMAGCVGQQAVRGERINRGYENRTLSHY 824
>gi|254571371|ref|XP_002492795.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|238032593|emb|CAY70616.1| RNA polymerase II largest subunit B220 [Komagataella pastoris
GS115]
gi|328353197|emb|CCA39595.1| DNA-directed RNA polymerase II subunit A [Komagataella pastoris CBS
7435]
Length = 1743
Score = 114 bits (286), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 289 IINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 348
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P +AK L+YPE V N L + V NGP++HPG
Sbjct: 349 SARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPG 402
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S + + I + L+ +PG + E+ E + + L+ RD AG++ L N
Sbjct: 684 ISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNN 743
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ + GKR+ GF +RSLPHF K P SKG V+
Sbjct: 744 VKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVEN 803
Query: 241 -FLR 243
+LR
Sbjct: 804 SYLR 807
Score = 39.3 bits (90), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LWTGKQ+ S+ +
Sbjct: 560 VVPQPAILKPKPLWTGKQLLSIAI 583
>gi|4808164|emb|CAB42795.1| largest subunit of the RNA polymerase II complex [Drosophila
guanche]
gi|40217263|emb|CAD68001.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217265|emb|CAD70679.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217267|emb|CAD70680.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217269|emb|CAD70681.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217271|emb|CAD70682.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217273|emb|CAD70683.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217275|emb|CAD70684.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217277|emb|CAD70685.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217279|emb|CAD70686.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217281|emb|CAD70687.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217283|emb|CAD70688.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217285|emb|CAD70689.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217287|emb|CAD70690.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217289|emb|CAD70691.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217291|emb|CAD70692.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217293|emb|CAD70693.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217295|emb|CAD70694.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217297|emb|CAD70695.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217299|emb|CAD70696.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217301|emb|CAD70697.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217303|emb|CAD70698.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217305|emb|CAD70699.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217307|emb|CAD70700.1| RNA polymerase II large subunit [Drosophila guanche]
gi|40217309|emb|CAD70701.1| RNA polymerase II large subunit [Drosophila guanche]
Length = 1889
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|195446609|ref|XP_002070845.1| GK25468 [Drosophila willistoni]
gi|194166930|gb|EDW81831.1| GK25468 [Drosophila willistoni]
Length = 1890
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELDPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ +WTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPMWTGKQIFSLIIPGN 591
>gi|194889556|ref|XP_001977109.1| RNA polymerase II 215kD subunit [Drosophila erecta]
gi|190648758|gb|EDV46036.1| RNA polymerase II 215kD subunit [Drosophila erecta]
Length = 1889
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|118431618|ref|NP_148215.2| DNA-directed RNA polymerase subunit A' [Aeropyrum pernix K1]
gi|116062942|dbj|BAA80857.2| DNA-directed RNA polymerase subunit A [Aeropyrum pernix K1]
Length = 891
Score = 114 bits (286), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 63/124 (50%), Positives = 82/124 (66%), Gaps = 4/124 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIP-LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E+W LQ A +I++E G L + K + L QRLKGK GR RGNLSGKRV++
Sbjct: 268 LIEENWMVLQEMVAAYIDNELPGARRLTHRRKRYLKTLAQRLKGKDGRIRGNLSGKRVNY 327
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLL---R 116
++RTVISPDP + I +VG+PE +AK LT RV N E ++ VLNGPDK PG L +
Sbjct: 328 SARTVISPDPYISINEVGVPEEIAKTLTIAMRVTPYNLEEARRYVLNGPDKWPGALFVYK 387
Query: 117 AKER 120
A ER
Sbjct: 388 ASER 391
Score = 67.8 bits (164), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 66/122 (54%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E L+ E + I G L+ PG S EE+LE I++ L +R + L P
Sbjct: 670 EELIREYKGRVYSIIEEYRKGTLEPIPGRSLEESLEIKIMEVLDELRKRVQEVASNNLDP 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N VMA +G++GS +NISQM A +GQQA+ G+R+ G NR L HF + +P + G
Sbjct: 730 FNDVFVMARTGARGSDVNISQMAAMLGQQAVRGRRIRRGLRNRVLAHFKENDIEPEAWGF 789
Query: 239 VK 240
V+
Sbjct: 790 VR 791
>gi|394998797|gb|AFN44317.1| RNA polymerase II largest subunit, partial [Physcia dubia]
Length = 355
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRARLKGKEGRVRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 316
>gi|343482718|gb|AEM45104.1| RNA polymerase II largest subunit [Archaeorhizomyces sp. FG15P2b]
Length = 727
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 80/115 (69%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I E + LQ H A +++++ +G P +Q K+ + + RLKGK+GR RGNL GKRVD
Sbjct: 211 IISEFEQLLQFHVATYMDNDIAGQPQALQKKTGRPIKSIRARLKGKEGRLRGNLMGKRVD 270
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++RTVI+ DPNL + +VG+P +AK LTYPE V N L++LV NGP++HPG
Sbjct: 271 FSARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPFNIHKLQELVRNGPNEHPG 325
Score = 101 bits (251), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/119 (45%), Positives = 70/119 (58%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ + ++ + I S LQ +PG S E+ E + + L+ RD GK+ Q L SN
Sbjct: 607 IQDAKTRVQEIIVDANSNNLQPEPGMSLRESFEHKVGQVLNKARDDVGKSAQQSLKDSNN 666
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M SGSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 667 VKQMVQSGSKGSFINISQMSACVGQQMVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVE 725
Score = 41.6 bits (96), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 30/50 (60%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K R+ ++S ++ E ++P PAI+KPK +WTGKQI S+++
Sbjct: 457 KFTKRDNFMSRDAVMNILMWVPEWDGVVPAPAIIKPKPMWTGKQILSMVI 506
>gi|308229948|gb|ADO24381.1| RNA polymerase II large subunit, partial [Drosophila cardini]
Length = 1870
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 287 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 346
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 347 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 400
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 651 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 692
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 693 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 734
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 735 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 794
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 795 FIKDDYGPESRGFVE 809
Score = 41.6 bits (96), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 559 MPQPCILKPRPLWTGKQIFSLIIPGN 584
>gi|394998745|gb|AFN44291.1| RNA polymerase II largest subunit, partial [Caloplaca crenularia]
Length = 355
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPXALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|4808162|emb|CAB42796.1| largest subunit of the RNA polymerase II complex [Drosophila
madeirensis]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|158332|gb|AAA28868.1| RNA polymerase II [Drosophila melanogaster]
Length = 1896
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 85.9 bits (211), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAH 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|195399163|ref|XP_002058190.1| GJ15949 [Drosophila virilis]
gi|194150614|gb|EDW66298.1| GJ15949 [Drosophila virilis]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|195059969|ref|XP_001995730.1| GH17604 [Drosophila grimshawi]
gi|193896516|gb|EDV95382.1| GH17604 [Drosophila grimshawi]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|162951789|gb|ABY21756.1| RE30267p [Drosophila melanogaster]
Length = 1887
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|397135858|gb|AFO11424.1| RNA polymerase I, partial [Pichia membranifaciens]
Length = 870
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P +AK LTYPE V N + L ++V NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPRSIAKTLTYPEIVTPYNIQALTEMVRNGPNEHPG 214
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++A + E K +G IR + L+ +PG + E+ E + K L+ RD AGK+
Sbjct: 484 PETMKAITETIKEAKDKVQGVIRDAQKNLLEAEPGMTLRESFEQKVSKILNEARDSAGKS 543
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L N M +GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF
Sbjct: 544 AETSLKDDNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTTDDY 603
Query: 232 DPASKGNVK--FLR 243
SKG V+ +LR
Sbjct: 604 SAESKGFVENSYLR 617
Score = 42.0 bits (97), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQI SL +
Sbjct: 372 VIPQPAILKPKPLWTGKQIMSLCI 395
>gi|308229942|gb|ADO24378.1| RNA polymerase II large subunit, partial [Drosophila acutilabella]
Length = 1845
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 275 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 334
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 335 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 388
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 639 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 680
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 681 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 722
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 723 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 782
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 783 FIKDDYGPESRGFVE 797
Score = 41.6 bits (96), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 547 MPQPCILKPRPLWTGKQIFSLIIPGN 572
>gi|123979354|gb|ABM81502.1| RNA polymerase II largest subunit [Parmeliella sp. AFTOL 334]
Length = 982
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 VVAEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L+ PG + ET E+ + K L+ RD AG + L N MALSGSKGS
Sbjct: 609 RSATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGS 668
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 669 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 720
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAI+KP+ WTGKQI SL++
Sbjct: 474 ILPQPAILKPRPKWTGKQIISLVI 497
>gi|4808166|emb|CAB42797.1| largest subunit of the RNA polymerase II complex [Drosophila
pseudoobscura]
Length = 1811
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 216 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 275
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 276 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 329
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 580 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 621
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 622 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 663
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 664 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 723
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 724 FIKDDYGPESRGFVE 738
Score = 41.6 bits (96), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 488 MPQPCILKPRPLWTGKQIFSLIIPGN 513
>gi|17530899|ref|NP_511124.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|14286163|sp|P04052.4|RPB1_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB1;
Short=RNA polymerase II subunit B1; AltName:
Full=DNA-directed RNA polymerase III largest subunit
gi|7292659|gb|AAF48057.1| RNA polymerase II 215kD subunit [Drosophila melanogaster]
gi|269954742|gb|ACZ54678.1| FI12846p [Drosophila melanogaster]
Length = 1887
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|9587179|gb|AAF89193.1|AF272643_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587181|gb|AAF89194.1|AF272644_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587183|gb|AAF89195.1|AF272645_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587185|gb|AAF89196.1|AF272646_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587187|gb|AAF89197.1|AF272647_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587189|gb|AAF89198.1|AF272648_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587191|gb|AAF89199.1|AF272649_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587193|gb|AAF89200.1|AF272650_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587195|gb|AAF89201.1|AF272651_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587197|gb|AAF89202.1|AF272652_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|9587199|gb|AAF89203.1|AF272653_1 RNA polymerase II largest subunit [Drosophila subobscura]
gi|4808177|emb|CAB42800.1| largest subunit of the RNA polymerase II complex [Drosophila
subobscura]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|4092885|gb|AAD12605.1| RNA polymerase II largest subunit [Antonospora locustae]
Length = 1553
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 66/152 (43%), Positives = 95/152 (62%), Gaps = 12/152 (7%)
Query: 2 IQEDWEWL-QLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E L Q H A I++E SG P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 257 IIRDYEQLVQFHVATLIDNEISGQPQALQKNGRPLKAISARLKGKEGRLRGNLMGKRVDF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++R+VI+ DPN+ + ++G+P VA I T+PERV N L++LV NGP+K+PG L+R
Sbjct: 317 SARSVITADPNISLEELGVPMKVAMIHTFPERVTSFNLNKLRKLVSNGPNKYPGANYLIR 376
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESGRL 141
+ + +S+ EGY+ R M +G L
Sbjct: 377 RDGQRIDLNFSRGDVILEEGYVVERHMLNGDL 408
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/101 (47%), Positives = 64/101 (63%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
G L+ PG + +ETLE+ I L+ RD +G ++ L+ NG M +GSKGS+INIS
Sbjct: 656 GSLEKLPGMNLQETLESKINLALNKARDISGTRAVESLNHLNGLKQMLKAGSKGSYINIS 715
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
Q+ +CVGQQ I KR+P GF R+LPHF K P S+G V
Sbjct: 716 QITSCVGQQNIESKRIPFGFRQRTLPHFVKNDYGPESRGFV 756
>gi|300394298|gb|ADK11775.1| DNA-directed RNA polymerase II subunit one [Boletopsis
leucomelaena]
Length = 399
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 217 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRSRLKGKEGRLRGNLMGKRVDF 276
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 277 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPHNIAYLQELVRNGPTAYPG 330
>gi|125983594|ref|XP_001355562.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
gi|54643878|gb|EAL32621.1| RpII215 [Drosophila pseudoobscura pseudoobscura]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|119514088|gb|ABL75817.1| RNA polymerase II largest subunit [Trapeliopsis flexuosa]
Length = 358
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVQEFEHLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P VAK LTYPE V N L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSVAKTLTYPETVTPYNIHKLHQLVKNGPNEHPG 317
>gi|432330443|ref|YP_007248586.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
gi|432137152|gb|AGB02079.1| DNA-directed RNA polymerase subunit A' [Methanoregula formicicum
SMSP]
Length = 879
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/111 (51%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H ++++E +G P + + L QRLKGK GRFRG+LSGKRV+F
Sbjct: 257 IIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDK 110
+SRTVISPDPNL + QVG+P VA +T P RV N E L+Q+V NGP +
Sbjct: 317 SSRTVISPDPNLSVSQVGVPRAVANEMTVPVRVTPYNIEELRQIVRNGPTR 367
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +L E IR E G+L+ PG + EETLE I++ L RD G+ + L
Sbjct: 661 DEVLKNAALDVERRIRIYEDGQLEPMPGRTVEETLEMQIMQVLGKARDQTGQIAGRHLGL 720
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA+SG++GS +N++QM C+GQQ++ G+R+ G+D+R+LPHF K + + G
Sbjct: 721 GNSAVVMAVSGARGSMLNLTQMAGCIGQQSVRGERIVRGYDDRTLPHFKKGDRGSDAHGF 780
Query: 239 VK 240
++
Sbjct: 781 IQ 782
>gi|308229950|gb|ADO24382.1| RNA polymerase II large subunit, partial [Drosophila falleni]
Length = 1847
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 275 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 334
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 335 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 388
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 639 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 680
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 681 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 722
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 723 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 782
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 783 FIKDDYGPESRGFVE 797
Score = 41.6 bits (96), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 547 MPQPCILKPRPLWTGKQIFSLIIPGN 572
>gi|195133818|ref|XP_002011336.1| GI16472 [Drosophila mojavensis]
gi|193907311|gb|EDW06178.1| GI16472 [Drosophila mojavensis]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQMAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|308229944|gb|ADO24379.1| RNA polymerase II large subunit, partial [Drosophila angularis]
Length = 1847
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 275 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 334
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 335 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 388
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 639 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 680
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 681 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 722
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 723 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 782
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 783 FIKDDYGPESRGFVE 797
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 547 MPQPCILKPRPLWTGKQIFSLIIPGN 572
>gi|195479340|ref|XP_002100852.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
gi|194188376|gb|EDX01960.1| RNA polymerase II 215kD subunit [Drosophila yakuba]
Length = 1889
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|195996443|ref|XP_002108090.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
gi|190588866|gb|EDV28888.1| hypothetical protein TRIADDRAFT_49721 [Trichoplax adhaerens]
Length = 1784
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED LQ H ++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 290 VITEDTRMLQFHVTTLTDNEVPGMPKAMQKSGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 349
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PD NL+I QVG+P +A+ L+YPE V N + + LV GPD +PG
Sbjct: 350 SARTVITPDSNLEIDQVGVPRSIAQTLSYPEIVTPLNIDRMYVLVRRGPDHYPG 403
Score = 81.6 bits (200), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/132 (36%), Positives = 72/132 (54%), Gaps = 8/132 (6%)
Query: 109 DKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHA 168
D +L+AK+ ++ I + L+ PG + +T E + + L+ RD
Sbjct: 689 DIQSTILKAKQDVVE--------VIEKAHNDELEPTPGNTLRKTFENQVNRILNDARDKT 740
Query: 169 GKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK 228
G + + L N M ++GSKGS INISQ+IA VGQQ + GKR+P GF +R+LPHF +
Sbjct: 741 GSSAQKSLSNFNNFKAMVVAGSKGSKINISQVIAVVGQQNVEGKRIPFGFRHRTLPHFIQ 800
Query: 229 FSKDPASKGNVK 240
P S+G V+
Sbjct: 801 DDYGPESRGFVE 812
Score = 44.3 bits (103), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/35 (60%), Positives = 25/35 (71%), Gaps = 6/35 (17%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
+P PAI++PK LWTGKQIFSLI+ P N NL
Sbjct: 562 MPQPAILRPKELWTGKQIFSLII------PGNVNL 590
>gi|397135963|gb|AFO11476.1| RNA polymerase I, partial [Dipodascopsis uninucleata]
Length = 871
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF++RTVIS
Sbjct: 109 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 168
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 169 DPNLALDQVGVPRSIARTLTYPEVVTPYNIHRLTQLVRNGPNEHPG 214
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ + + I ++ RL +PG + E+ E + K L+ RD AG++
Sbjct: 489 MRNITNTIAQAKREVQQVILDAQANRLPPEPGMTLRESFEQKVSKVLNTARDTAGRSAET 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +SGSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P
Sbjct: 549 SLTDMNNVKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFSYRTLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 609 SRGFIENSYLR 619
Score = 40.4 bits (93), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KPK LWTGKQ+ S+++
Sbjct: 373 IPHPAILKPKPLWTGKQLLSMVI 395
>gi|308229946|gb|ADO24380.1| RNA polymerase II large subunit, partial [Drosophila brachynephros]
Length = 1847
Score = 114 bits (285), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 275 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 334
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 335 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 388
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 639 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 680
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 681 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 722
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 723 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 782
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 783 FIKDDYGPESRGFVE 797
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 547 MPQPCILKPRPLWTGKQIFSLIIPGN 572
>gi|83320444|gb|ABC02849.1| RNA polymerase II largest subunit, partial [Coemansia reversa]
Length = 1013
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 61/135 (45%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 220 VINEFVTLLQFHTAAFMNNEASGMPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 279
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPN+ I QVG+P +A+ LTYPE V N + L++ V NG D +PG ++R
Sbjct: 280 SARTVITGDPNISIDQVGVPRSIARNLTYPETVTPYNIDRLQEYVRNGRDAYPGAKFVVR 339
Query: 117 AKERLLSEGYSKCEG 131
++ Y+K G
Sbjct: 340 DNGEQINLQYNKQRG 354
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 77/125 (61%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+ +E Y++ + YI ++ L+ PG + +E+ E + L+ RD AGK L L +N
Sbjct: 619 ITNECYARVDRYIEEAQNDALECMPGMTIKESFEVRVNTALNNARDDAGKQVLDRLKDTN 678
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M+L+GSKGS INISQ+ ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 679 NIAQMSLAGSKGSKINISQISACVGQQNVEGKRIPFGFKYRTLPHFGKDDYSPESRGFVR 738
Query: 241 --FLR 243
+LR
Sbjct: 739 NSYLR 743
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ +L + + L + +P P I+KPK LWTGKQI+S+++ +C
Sbjct: 465 KFTRRDNFLDTDMIMLLMMWLPDWDGTLPTPCILKPKPLWTGKQIYSMVIPKGTNC 520
>gi|120561201|gb|ABM26986.1| RNA polymerase II largest subunit, partial [Pichia kudriavzevii]
Length = 1647
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 213 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 272
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P +A+ LTYPE V N + L ++V NGP++HPG
Sbjct: 273 SARTVISGDPNLELDQVGVPRSIARTLTYPEIVTPYNIQKLTEMVRNGPNEHPG 326
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 74/134 (55%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ + E K + IR + L+ +PG + E+ E + K L+ RD AGK+
Sbjct: 596 PETMKTITETIKEAKDKVQTVIREAQKNLLEAEPGMTLRESFEQKVSKILNEARDAAGKS 655
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L SN M +GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF
Sbjct: 656 AETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTTDDY 715
Query: 232 DPASKGNVK--FLR 243
SKG V+ +LR
Sbjct: 716 SAESKGFVENSYLR 729
Score = 40.0 bits (92), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
++P PAI+KPK LW+GKQI SL + PN
Sbjct: 484 VVPQPAILKPKPLWSGKQILSLCI-PN 509
>gi|308229952|gb|ADO24383.1| RNA polymerase II large subunit, partial [Drosophila guttifera]
Length = 1872
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 287 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 346
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 347 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 400
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 651 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 692
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 693 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 734
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 735 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 794
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 795 FIKDDYGPESRGFVE 809
Score = 41.6 bits (96), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 559 MPQPCILKPRPLWTGKQIFSLIIPGN 584
>gi|315425378|dbj|BAJ47044.1| DNA-directed RNA polymerase subunit A [Candidatus Caldiarchaeum
subterraneum]
gi|315426559|dbj|BAJ48189.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
gi|343485295|dbj|BAJ50949.1| DNA-directed RNA polymerase subunit A' [Candidatus Caldiarchaeum
subterraneum]
Length = 1254
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 4/155 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E + LQ H + N+E G+ P + + L QRLKGK+GRFR NLSGKRVDF
Sbjct: 261 VIEELSDLLQYHVTTYFNNEAVGVVPAKHRSGRILKTLAQRLKGKEGRFRLNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVISPDPN++I +VG+P +A LT ERV N E ++ LV NG DK+PG A+
Sbjct: 321 SARTVISPDPNIRINEVGVPLEIAMQLTVAERVTPWNLEKMRTLVRNGSDKYPG---ARY 377
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLE 154
+ +G ++ +E +PG E L+
Sbjct: 378 IIRPDGKRVRLKFVANLEELATALEPGYVVERHLQ 412
Score = 78.6 bits (192), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 62/103 (60%)
Query: 137 ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFIN 196
++G ++ PG +AE+ EA +LK LS RD AGK + ++ +MA +G++G+ +N
Sbjct: 667 QTGEVEIPPGMTAEQAFEADVLKILSEARDSAGKLIRARVSQNSSAFIMAKTGARGTMLN 726
Query: 197 ISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+ QMIA VGQQ++ +RV G+ R L F + P ++G V
Sbjct: 727 LDQMIAVVGQQSVRRERVHRGYRKRVLSFFKQDDLSPRARGFV 769
Score = 42.4 bits (98), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 20/23 (86%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPA+ P+ +WTGKQ+FSL+L
Sbjct: 534 IPPPAVKDPEPMWTGKQVFSLLL 556
>gi|195355215|ref|XP_002044088.1| GM13065 [Drosophila sechellia]
gi|194129357|gb|EDW51400.1| GM13065 [Drosophila sechellia]
Length = 1887
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|194762514|ref|XP_001963379.1| GF20366 [Drosophila ananassae]
gi|190629038|gb|EDV44455.1| GF20366 [Drosophila ananassae]
Length = 1889
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYNE-IQCAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|119643505|gb|ABL85574.1| RNA polymerase II largest subunit [Cetraria islandica]
Length = 1003
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 224 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 284 SARTVITGDPNLSLDEVGVPRSIARTLTYPEXVTPYNIQKLHQLVKNGPNEHPG 337
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L++ PG + ET E+ + K L+ RD AG + L N MA SGSKGS INI
Sbjct: 634 ANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTINI 693
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 694 SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 741
Score = 42.0 bits (97), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 495 VIPQPAIVKPLAMWTGKQILSLVI 518
>gi|110669639|gb|ABG81914.1| RNA polymerase II largest subunit [Bacidia schweinitzii]
Length = 1016
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP+ HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNDHPG 336
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
+L++ PG + ET E+ + + L+ RD AG + L N MA SGSKGS INISQ
Sbjct: 635 QLESLPGMNVRETFESKVSQALNKARDEAGTVTEKSLKDLNNATQMARSGSKGSTINISQ 694
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 695 MTAVVGQQSVGGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 740
Score = 42.4 bits (98), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 22/24 (91%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+A+WTGKQ+ SL++
Sbjct: 494 VIPQPAIIKPRAMWTGKQLISLVV 517
>gi|308229954|gb|ADO24384.1| RNA polymerase II large subunit, partial [Drosophila nigromaculata]
Length = 1872
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 287 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 346
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 347 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 400
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 97/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 651 GRFYGNI---------QTVINNWLLLEGHSIGIGDTIADPQTYTE-IQTAIK-------- 692
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 693 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 734
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 735 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 794
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 795 FIKDDYGPESRGFVE 809
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 559 MPQPCILKPRPLWTGKQIFSLIIPGN 584
>gi|397135967|gb|AFO11478.1| RNA polymerase I, partial [Dipodascopsis anomala]
Length = 872
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VVNEFEALLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 161 SARTVISGDPNLALDQVGVPRSIARTLTYPEIVTPYNIHKLSQLVRNGPNEHPG 214
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 52/131 (39%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +S+ + + I ++ L +PG + E+ E + K L+ RD AG++
Sbjct: 489 MRNITNTISQAKKEVQQLILDAQANVLPAEPGMTLRESFEQKVSKVLNQARDTAGRSAET 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L +N M ++GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P
Sbjct: 549 SLTDANNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRIPFGFSYRTLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 609 SRGFIENSYLR 619
Score = 43.1 bits (100), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLIL 330
K+ R+ +LS ++ F +IP PAI+KPKA WTGKQ+ S+++
Sbjct: 346 KMTKRDSFLSYDQVMNILFWVPNWDGVIPQPAILKPKAYWTGKQMMSMVI 395
>gi|308229958|gb|ADO24386.1| RNA polymerase II large subunit, partial [Drosophila quinaria]
Length = 1847
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 275 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 334
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 335 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 388
Score = 87.8 bits (216), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 639 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYTE-IQTAIK-------- 680
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 681 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 722
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 723 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 782
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 783 FIKDDYGPESRGFVE 797
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 547 MPQPCILKPRPLWTGKQIFSLIIPGN 572
>gi|451994492|gb|EMD86962.1| hypothetical protein COCHEDRAFT_1217961 [Cochliobolus
heterostrophus C5]
Length = 1737
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFTSRTVISP 67
+Q H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 305 VQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 364
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 365 DPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG 410
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD PG +S+ K E I +L+ PG + T E+ + K L+ R+
Sbjct: 683 PD--PGTSEKIASEISKSKVKVEDIIATATKDQLEPLPGMTIRGTFESKVQKFLNEGREG 740
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
G A L N + +SGSKGS +NISQM+A VGQQA+ G+R+P GF R+LPHF
Sbjct: 741 GGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFS 800
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 801 KDDYSPESRGFVENSYLR 818
Score = 38.9 bits (89), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 307 IIPPPAIMKPKALWTGKQIFSL-------ILKPNRDCPVNANLKTKGRAYTFKFSIMVKD 359
I+P PAI+KP+ LWTGKQI S+ I K D + + K ++ K ++
Sbjct: 568 ILPEPAILKPRPLWTGKQIVSMAFPREVNIEKKEDDSTPSKDNDIKDKSLMIKGGQLIYG 627
Query: 360 QFRER---NTACKISHVTF 375
Q ++ +A + H+ F
Sbjct: 628 QVTKKIVGASAGGVIHIVF 646
>gi|255941856|ref|XP_002561697.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586320|emb|CAP94069.1| Pc16g13990 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 1733
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++ +G P MQ ++ + L RLKGK+GR R NL GKRVDF
Sbjct: 299 VIREFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P A+ILTYPE V N E L++LV NGP+ HPG
Sbjct: 359 SARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPYNIEKLQRLVANGPNLHPG 412
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L N + MA SGSKGS INISQM
Sbjct: 718 LEALPGMNVRETFESKVSRALNNARDEAGDATEKSLKDLNNAIQMARSGSKGSAINISQM 777
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 778 TALVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 822
>gi|324120568|dbj|BAJ78675.1| RNA polymerase II largest subunit [Metylophorus sp. E-43]
Length = 1792
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E+ + LQ H A FI+++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 297 IISENMKMLQFHVATFIDNDMPGLPRAMQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDF 356
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE + N + +++LV G ++PG
Sbjct: 357 SARTVITPDPNLRIDQVGVPRSIAQNLTFPEIITPFNIDKMQELVRRGNSQYPG 410
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
G+F GN+ +TVI+ L+ + +GI + +A TY E + A K
Sbjct: 661 GQFYGNI---------QTVINHWLLLEGHSIGIGDTIADPQTYLE-IQKAIK-------- 702
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AKE ++ I+ + L+ PG + +T E + + L+ R
Sbjct: 703 ----------KAKEDVIE--------VIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 744
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M ++GSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 745 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 804
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 805 FIKDDYGPESRGFVE 819
Score = 42.4 bits (98), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 22/26 (84%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P PAI+KP+ LWTGKQ+FSLI+ N
Sbjct: 569 MPIPAILKPRPLWTGKQVFSLIIPGN 594
>gi|83320452|gb|ABC02853.1| RNA polymerase II largest subunit, partial [Umbelopsis ramanniana]
Length = 571
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 87/137 (63%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 53 VVQEFEQLLQFHTATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 112
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L+ LV NGP +HPG ++R
Sbjct: 113 SARTVITGDPNLSVDEVGVPRSIARTLTYPEIVTPYNMDKLQTLVRNGPTEHPGAKYVIR 172
Query: 117 AKERLLSEGYSKCEGYI 133
+ Y K G I
Sbjct: 173 DTGERIDLRYHKRAGEI 189
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 72/120 (60%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
L+S + + I A + +L+ QPG + E+ EA + + L+ RD AGK L N
Sbjct: 452 LISSAKDRVQEIILAAQQDKLEVQPGMTIRESFEAKVNQALNKARDDAGKKAQSSLREDN 511
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M ++GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 512 NVKQMVVAGSKGSFINISQMTACVGQQNVEGKRIPYGFKFRTLPHFAKDDHSPESRGFVE 571
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 33/58 (56%)
Query: 279 TDKVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+K R+ +LS L ++ + +P PAI+KPK +WTGKQI S+I+ +C
Sbjct: 296 VNKFTRRDSFLSKDLVMNIVMWVPDWDGYLPTPAILKPKPMWTGKQILSMIIPKGINC 353
>gi|90309090|gb|ABD93699.1| RNA polymerase II largest subunit [Bolbitius vitellinus]
Length = 401
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 216 VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 275
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LTYPERV N +L++LV NGP +PG
Sbjct: 276 SARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIAYLQELVRNGPTNYPG 329
>gi|451846374|gb|EMD59684.1| hypothetical protein COCSADRAFT_164565 [Cochliobolus sativus
ND90Pr]
Length = 1737
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFTSRTVISP 67
+Q H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 305 VQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 364
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 365 DPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG 410
Score = 89.0 bits (219), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD PG +S+ K E I +L+ PG + T E+ + K L+ R+
Sbjct: 683 PD--PGTSEKIASEISKSKVKVEDIIATATKDQLEPLPGMTIRGTFESKVQKFLNEGREG 740
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
G A L N + +SGSKGS +NISQM+A VGQQA+ G+R+P GF R+LPHF
Sbjct: 741 GGTAAQNSLKDFNNVVQTVVSGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFS 800
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 801 KDDYSPESRGFVENSYLR 818
Score = 38.9 bits (89), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 10/79 (12%)
Query: 307 IIPPPAIMKPKALWTGKQIFSL-------ILKPNRDCPVNANLKTKGRAYTFKFSIMVKD 359
I+P PAI+KP+ LWTGKQI S+ I K D + + K ++ K ++
Sbjct: 568 ILPEPAILKPRPLWTGKQIVSMAFPREVNIEKKEDDSTPSKDNDIKDKSLMIKGGQLIYG 627
Query: 360 QFRER---NTACKISHVTF 375
Q ++ +A + H+ F
Sbjct: 628 QVTKKIVGASAGGVIHIVF 646
>gi|189030951|gb|ABD97888.2| RNA polymerase II largest subunit [Clavaria inaequalis]
Length = 413
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A ++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 220 VIMEFEQLLQFHVATYMDNNIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 279
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LTYPERV N +L++LV NGP ++PG
Sbjct: 280 SARTVITGDPNLELDEVGVPKSIAMNLTYPERVTPYNIVYLQELVRNGPGQYPG 333
>gi|336041419|gb|AEH95287.1| RNA polymerase II largest subunit [Malawimonas jakobiformis]
Length = 1042
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/115 (50%), Positives = 75/115 (65%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+I E W LQ H A I ++ SG P +Q S + + RLKGK GR RGNL GKRVD
Sbjct: 223 IIDEFWLMLQYHVANIIETDISGFPKPVQKGSGRVLKSIRSRLKGKHGRIRGNLMGKRVD 282
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++R+VI+ DPNL + +VG+P +A LTYPE V N + ++QLV NGP KHPG
Sbjct: 283 FSARSVITADPNLSVNEVGVPRTIALNLTYPETVTPFNIQRMRQLVENGPHKHPG 337
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/134 (40%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ +++ + I + G+L+ PG + ET E + L+ RD AGKA
Sbjct: 614 PATMQNITKIIGRSKQEVSDLITQLHEGKLEATPGRTLMETFEMKVNTALNKARDEAGKA 673
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L +N M +GSKGS INI+QMIACVGQQ + GKR+P GF NR+LPHF
Sbjct: 674 AVGSLRATNAAKEMVTAGSKGSNINIAQMIACVGQQNVEGKRIPYGFRNRTLPHFVTNDM 733
Query: 232 DPASKGNVK--FLR 243
P S+G V+ +LR
Sbjct: 734 TPESRGFVENSYLR 747
Score = 46.2 bits (108), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKP 332
+P PAI+KPK LWTGKQ+FSLI+ P
Sbjct: 496 VPKPAILKPKQLWTGKQVFSLIVPP 520
>gi|324120588|dbj|BAJ78685.1| RNA polymerase II largest subunit [Stenopsyche marmorata]
Length = 1754
Score = 114 bits (285), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A F++++ G+P +Q K + + RLKGK+GR RGNL GKRVDF
Sbjct: 295 VIQENIKMLQFHVATFVDNDMPGMPRAVQKSGKPLKAVKARLKGKEGRIRGNLMGKRVDF 354
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 355 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQKLVRRGNSQYPG 408
Score = 88.6 bits (218), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TV++ L+ + +GI + +A TY E + A K
Sbjct: 659 GRFYGNI---------QTVVNNWLLLEGHSIGIGDTIADPQTYLE-IQKAIK-------- 700
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AKE ++ I+ + L+ PG + +T E + + L+ R
Sbjct: 701 ----------KAKEDVIE--------VIQKAHNMELEPTPGNTLRQTFENQVNRILNDAR 742
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 743 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 802
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 803 FIKDDYGPESRGFVE 817
Score = 42.7 bits (99), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KPK LWTGKQIFSLI+ N
Sbjct: 567 MPKPCILKPKPLWTGKQIFSLIIPGN 592
>gi|119514096|gb|ABL75821.1| RNA polymerase II largest subunit [Aspicilia cinerea]
Length = 989
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVSEFEALLQYHVATYMDNDIAGIPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNDHPG 317
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ ++A E +++ + R+ L+ PG + ET E+ + K L+ RD
Sbjct: 588 PDRE--TIQAIENAVNKRKDEVTELTRSATENELEPMPGMNVRETFESKVSKALNTARDE 645
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG A L N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 646 AGTATEDNLKDLNNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 705
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 706 KDDYSPESRGFVENSYLR 723
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SL++
Sbjct: 475 VIPQPAILKPRPKWTGKQIISLVI 498
>gi|120561229|gb|ABM27000.1| RNA polymerase II largest subunit, partial [Blastocladiella
emersonii]
Length = 1005
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/113 (49%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
++E E LQ HCA +++E SG+P Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 210 LKEHEELLQFHCATLVDNEISGMPRAAQKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFS 269
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPNL I QVG+P +A LTYPE V N L+++V G ++HPG
Sbjct: 270 ARTVITGDPNLSIDQVGVPRSIALNLTYPEMVTRHNIRRLQEMVHRGAEEHPG 322
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 70/125 (56%), Gaps = 2/125 (1%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
L+ E + I A + L+ + G + ET EA + + L+ + AG A + N
Sbjct: 607 LIGEARAGVNAVIEAAQKDTLKVETGLTLRETFEAQVNRLLNGAVNAAGGAAAKSFKVHN 666
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M ++GSKGS INISQM ACVGQQ + GKR+P GF RSLPHF K P S+G V+
Sbjct: 667 NVKHMVVAGSKGSNINISQMSACVGQQNVEGKRIPFGFQYRSLPHFVKDDYSPESRGFVE 726
Query: 241 --FLR 243
+LR
Sbjct: 727 NSYLR 731
Score = 43.1 bits (100), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KPK LWTGKQI SLI+ P +C
Sbjct: 481 VPVPAILKPKPLWTGKQILSLII-PKVNC 508
>gi|189197231|ref|XP_001934953.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187980901|gb|EDU47527.1| DNA-directed RNA polymerase II subunit RPB1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1742
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFTSRTVISP 67
+Q H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 304 VQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 363
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 364 DPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG 409
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E I L+ PG + T E+ + K L+ R+ G A L N + +
Sbjct: 700 KVEQIIEQATLDELEPMPGMTIRGTFESKVQKFLNEAREGGGTAAQTSLKDFNNVVQTVV 759
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SGSKGS +NISQM+A VGQQA+ G+R+P GF R+LPHF K P S+G V+ +LR
Sbjct: 760 SGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFAKDDYSPESRGFVENSYLR 817
>gi|330931381|ref|XP_003303389.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
gi|311320680|gb|EFQ88526.1| hypothetical protein PTT_15561 [Pyrenophora teres f. teres 0-1]
Length = 1738
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDFTSRTVISP 67
+Q H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF++RTVI+
Sbjct: 304 VQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDFSARTVITG 363
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 364 DPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTNLVRNGPNQHPG 409
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 66/118 (55%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E I L+ PG + T E+ + K L+ R+ G A L N + +
Sbjct: 700 KVEQIIEQATLDELEPMPGMTIRGTFESKVQKFLNEAREGGGTAAQTSLKDFNNVVQTVV 759
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SGSKGS +NISQM+A VGQQA+ G+R+P GF R+LPHF K P S+G V+ +LR
Sbjct: 760 SGSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFAKDDYSPESRGFVENSYLR 817
>gi|119514058|gb|ABL75802.1| RNA polymerase II largest subunit [Psora rubiformis]
Length = 973
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVD+
Sbjct: 204 VVDEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDY 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/106 (48%), Positives = 66/106 (62%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
+L++ PG + ET E+ + K L+ RD AG + L N MA SGSKGS INISQ
Sbjct: 600 KLESLPGMNVRETFESKVSKALNKARDDAGTVTEESLKDLNNATQMARSGSKGSTINISQ 659
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 660 MTAVVGQQSVEGKRIPLGFKYRTLPHFTKDDYSPESRGFVENSYLR 705
Score = 40.4 bits (93), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ +WTGKQ+ SL++
Sbjct: 459 VIPQPAIIKPRPMWTGKQLVSLVI 482
>gi|394998747|gb|AFN44292.1| RNA polymerase II largest subunit, partial [Caloplaca gloriae]
Length = 355
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|119514027|gb|ABL75786.1| RNA polymerase II largest subunit [Candelariella terrigena]
Length = 363
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++QE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 208 VVQEFESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 267
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 268 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 321
>gi|119514098|gb|ABL75822.1| RNA polymerase II largest subunit [Aspicilia caesiocinerea]
Length = 989
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVSEFEALLQYHVATYMDNDIAGIPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNDHPG 317
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ ++A E +++ + R+ L+ PG + ET E+ + K L+ RD
Sbjct: 588 PDRE--TIQAIENAVNKRKDEVTELTRSATENELEPMPGMNVRETFESKVSKALNTARDE 645
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG A L N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 646 AGTATEDNLKDLNNAIQMARSGSKGSSINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 705
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 706 KDDYSPESRGFVENSYLR 723
Score = 39.7 bits (91), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SL++
Sbjct: 475 VIPQPAILKPRPKWTGKQIISLVI 498
>gi|119643711|gb|ABL85584.1| RNA polymerase II largest subunit [Vulpicida pinastri]
Length = 996
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 217 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 276
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 277 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 330
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L++ PG + ET E+ + K L+ RD AG + L N MA SGSKGS INI
Sbjct: 627 ANELESLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMARSGSKGSTINI 686
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 687 SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 734
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 488 VIPQPAIVKPLAMWTGKQILSLVI 511
>gi|390603892|gb|EIN13283.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Punctularia strigosozonata HHB-11173 SS5]
Length = 1729
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/108 (49%), Positives = 76/108 (70%), Gaps = 1/108 (0%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
+ LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF++RTVI
Sbjct: 307 QLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDFSARTVI 366
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ DPNL + +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 367 TGDPNLMLDEVGVPRSIAMTLTYPERVTPYNIAYLQELVRNGPTAYPG 414
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 71/106 (66%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ QPG + E+ E+ + +EL++ RD +G+ + L N M ++GSKGS+INISQ
Sbjct: 713 RLKPQPGMTIRESFESKVERELNLARDDSGQYAQKHLKEDNNVKQMVVAGSKGSYINISQ 772
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ++ G+R+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 773 MSVCVGQQSVEGRRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 818
>gi|394998765|gb|AFN44301.1| RNA polymerase II largest subunit, partial [Letrouitia vulpina]
Length = 355
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IVSEFEQLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPXNIHKLHQLVKNGPNEHPG 316
>gi|113957418|gb|ABI49110.1| RNA polymerase II largest subunit [Letrouitia domingensis]
Length = 998
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 205 IVSEFENLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 264
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 265 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 318
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ ++ E +SE + R + L++ PG S ET E+ + L+ R++
Sbjct: 587 PDRK--TIQGIENAVSEQKKEVIEITRKATADELESLPGMSIRETFESKVQAALNQAREN 644
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N + MALSGSKGS INISQM A VGQQA+ GKR+P GF R+LPHF
Sbjct: 645 AGTKTQESLKDLNNAVQMALSGSKGSTINISQMTAIVGQQAVEGKRIPFGFKYRTLPHFT 704
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 705 KDDYSPESRGFVENSYLR 722
Score = 42.7 bits (99), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
+IP PAI+KP+ WTGKQI SL+L P
Sbjct: 476 VIPQPAILKPRPRWTGKQIISLVLPP 501
>gi|119643566|gb|ABL85577.1| RNA polymerase II largest subunit [Hypotrachyna degelii]
Length = 925
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 132 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 191
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 192 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 245
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E ++ ++ R+ L++ PG + ET E+ + K L+ RD
Sbjct: 514 PDRHT--IQQIENAVNNQKAEVLEITRSATENELESLPGMNVRETFESKVSKALNKARDD 571
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 572 AGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 631
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 632 KDDYSPESRGFVENSYLR 649
Score = 42.4 bits (98), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 403 VIPQPAIVKPLAMWTGKQILSLVI 426
>gi|154151472|ref|YP_001405090.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
gi|154000024|gb|ABS56447.1| DNA-directed RNA polymerase subunit A' [Methanoregula boonei 6A8]
Length = 879
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/109 (52%), Positives = 75/109 (68%), Gaps = 1/109 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H ++++E +G P + + L QRLKGK GRFRG+LSGKRV+F
Sbjct: 257 IIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGP 108
+SRTVISPDPNL + +VG+P VA +T P RV N E LKQ+V NGP
Sbjct: 317 SSRTVISPDPNLSVTEVGVPRAVANEMTIPVRVTPYNLEELKQIVRNGP 365
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 69/107 (64%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ E G+L+ PG + EETLE I++ L RD G+ + L N +VMA+SG++G
Sbjct: 675 IKIYEDGQLEPMPGRTVEETLEMQIMQVLGKARDQTGQIAGRHLGLGNSAVVMAVSGARG 734
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
S +N++QM C+GQQ++ G+R+ G+D+R+LPHF + + + G +
Sbjct: 735 SMLNLTQMAGCIGQQSVRGERIVRGYDDRTLPHFKRGDRGADAHGFI 781
>gi|119643881|gb|ABL85592.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 336
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+ G ++ E +++ ++ + L+ PG + ET E+ + K L+ RD
Sbjct: 605 PDR--GTIKQIEDAVNKQKEDVAVITQSATANELEPLPGMNVRETFESKVSKALNKARDD 662
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MALSGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 663 AGTVTEKSLKDLNNATQMALSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 722
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 723 KDDYSPESRGFVENSYLR 740
Score = 39.3 bits (90), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAI+KP+ WTGKQI SL++
Sbjct: 494 ILPQPAILKPRPKWTGKQIISLVI 517
>gi|343424938|emb|CBQ68476.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Sporisorium reilianum SRZ2]
Length = 1785
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ HCA F++++ +G P MQ + + + RLKGK+GR RGNL GKRV+F
Sbjct: 302 ILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L++ +VG+P+ +A+ LTYPERV N+ L +LV NGP+ +PG
Sbjct: 362 SARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG 415
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/124 (43%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S S YI+ L+ + G + E+ EA + + L+ RD G L N
Sbjct: 697 ISAAKSAVMDYIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEGSLPDFNN 756
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SGSKGSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S+G V+
Sbjct: 757 VKQMVVSGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVEN 816
Query: 241 -FLR 243
+LR
Sbjct: 817 SYLR 820
>gi|397135956|gb|AFO11473.1| RNA polymerase I, partial [Komagataella pastoris]
Length = 872
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 IINEVEQLLQFHVATYMDNDIAGQPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P +AK L+YPE V N L + V NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPISIAKTLSYPETVTQYNIHRLTEYVRNGPNEHPG 214
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S + + I + L+ +PG + E+ E + + L+ RD AG++ L N
Sbjct: 496 ISSAKEQVQEIIYKAQHNELELKPGMTLRESFEGEVSRTLNDARDSAGRSAEMNLKDLNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINI+QM ACVGQQ + GKR+ GF +RSLPHF K P SKG V+
Sbjct: 556 VKQMVSAGSKGSFINIAQMSACVGQQMVEGKRIAFGFADRSLPHFTKDDFSPESKGFVEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAIMKPK LWTGKQ+ S+ +
Sbjct: 372 VVPQPAIMKPKPLWTGKQLLSIAI 395
>gi|430812931|emb|CCJ29676.1| unnamed protein product [Pneumocystis jirovecii]
Length = 1762
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 292 VVSEYEQLLQFHVATYMDNDIAGQPQALQKTGRPLKSIRARLKGKEGRLRGNLMGKRVDF 351
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + ++G+P +A+ILTYPE V N L++LV NGP++HPG
Sbjct: 352 SARTVITGDPNLSLDELGVPRSIARILTYPETVTPYNIHKLQELVRNGPNEHPG 405
Score = 105 bits (261), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++E +K + I + RLQ +PG + E+ E+ + + L+ RD AG++
Sbjct: 680 MRDITNTIAEAKAKVQEIILDAQQNRLQVEPGMTLRESFESKVSRALNQARDTAGRSAQM 739
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L SN M +GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P
Sbjct: 740 SLKDSNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPYGFKYRTLPHFTKDDYSPE 799
Query: 235 SKGNVK--FLR 243
S G ++ +LR
Sbjct: 800 SGGFIENSYLR 810
Score = 44.7 bits (104), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPKA+WTGKQI S+++
Sbjct: 564 MPPPAIIKPKAMWTGKQILSMVI 586
>gi|119643942|gb|ABL85596.1| RNA polymerase II largest subunit [uncultured Ascomycota]
Length = 390
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 228 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 287
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP+ HPG
Sbjct: 288 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNDHPG 341
>gi|448366553|ref|ZP_21554676.1| DNA-directed RNA polymerase subunit A' [Natrialba aegyptia DSM
13077]
gi|445654008|gb|ELZ06864.1| DNA-directed RNA polymerase subunit A' [Natrialba aegyptia DSM
13077]
Length = 975
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/143 (42%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VAK +T V N ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVAKEMTQTMNVTERNLAEARRYVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVQAG 474
Score = 91.7 bits (226), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/113 (38%), Positives = 71/113 (62%), Gaps = 3/113 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG
Sbjct: 713 AQERIDETIEDANDRVEELIEAYERGELESLPGRTLDETLEMKIMQTLSRARDNAGNIAD 772
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 773 EHFEDENPAVVMANSGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|397135973|gb|AFO11481.1| RNA polymerase I, partial [Candida caseinolytica]
Length = 872
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ + +P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFETLLQYHVATYMDNDIASVPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 161 SARTVITGDPNLSLDQVGVPRSIARTLTYPEIVTPYNIQRLSQLVQNGPNEHPG 214
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++ K + IR + RL +PG + E+ E + + L+ RD G++
Sbjct: 489 MRDITNTITAAKEKVQDIIRDAQENRLPAEPGMTLRESFEHKVSQTLNQARDTTGRSAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L +N M +GSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 549 SLKDTNNVKQMVTAGSKGSFINISQMSACVGQQIVEGKRIPFGFKDRSLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG ++ +LR
Sbjct: 609 SKGFIENSYLR 619
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAIMKPK LWTGKQI SL +
Sbjct: 373 VPIPAIMKPKPLWTGKQIVSLCI 395
>gi|126178251|ref|YP_001046216.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|126178264|ref|YP_001046229.1| DNA-directed RNA polymerase subunit A' [Methanoculleus marisnigri
JR1]
gi|125861045|gb|ABN56234.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
gi|125861058|gb|ABN56247.1| DNA-directed RNA polymerase, subunit A' [Methanoculleus marisnigri
JR1]
Length = 882
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/111 (50%), Positives = 78/111 (70%), Gaps = 1/111 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H ++++E +G P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 258 IIEDLWELLQYHVTTYLDNEVAGCPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 317
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDK 110
++RTVISPDPNL I +VGIP +A +T P RV N E ++Q VLNGP++
Sbjct: 318 SARTVISPDPNLSIGEVGIPLAIANEMTLPIRVTTFNIEEMRQYVLNGPER 368
Score = 91.3 bits (225), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 73/121 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ +L S + I+ G+L+ PG + EETLE I++ L RD G+ + L
Sbjct: 663 DEVLDGAISDVDRRIKIYNEGQLEPMPGRTLEETLEMQIMQVLGKARDRTGEIAGRHLGM 722
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA+SG++GS +N++QM C+GQQ++ G+R+ G+++R+LPHF + + + G
Sbjct: 723 DNSAVVMAVSGARGSMLNLTQMAGCLGQQSVRGERIMRGYEDRTLPHFRRNERGAEAHGF 782
Query: 239 V 239
+
Sbjct: 783 I 783
>gi|396481989|ref|XP_003841371.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
gi|312217945|emb|CBX97892.1| similar to DNA-directed RNA polymerase ii largest subunit
[Leptosphaeria maculans JN3]
Length = 1875
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
++ E +Q H A +++++ +G+P MQ + I+ RLKGK+GR RGNL GKRVDF
Sbjct: 434 VLNEFEALVQYHVATYMDNDANGVPQAMQKSGRPLKTIRGRLKGKEGRLRGNLMGKRVDF 493
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LTYPE V N L LV NGP++HPG
Sbjct: 494 SARTVITGDPNLSLDQVGVPRSIARTLTYPEVVTKFNISKLTALVRNGPNQHPG 547
Score = 84.0 bits (206), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 65/117 (55%), Gaps = 2/117 (1%)
Query: 129 CEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALS 188
E I L+ PG + T E+ + K L+ R+ G A L N + +S
Sbjct: 839 VEEVIVKATKNELEPLPGMTIRGTFESKVQKFLNEGREGGGTAAQNSLKDFNNVVQTVVS 898
Query: 189 GSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GSKGS +NISQM+A VGQQA+ G+R+P GF R+LPHF K P S+G V+ +LR
Sbjct: 899 GSKGSTVNISQMVALVGQQAVEGQRIPYGFKYRTLPHFTKDDYSPQSRGFVENSYLR 955
>gi|119643869|gb|ABL85591.1| RNA polymerase II largest subunit [Degelia plumbea]
Length = 1002
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVMEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 336
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ L+ PG + ET E+ + K L+ RD AG + L N MALSGSKGS INI
Sbjct: 633 ANELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGSTINI 692
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 693 SQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 740
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAI+KP+ WTGKQI SL++
Sbjct: 494 ILPQPAILKPRPKWTGKQIISLVI 517
>gi|394998771|gb|AFN44304.1| RNA polymerase II largest subunit, partial [Seirophora lacunosa]
Length = 355
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|123979322|gb|ABM81486.1| RNA polymerase II largest subunit [Myelochroa aurulenta]
Length = 984
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 205 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 264
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 265 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 318
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E ++ ++ R+ L++ PG + ET E+ + K L+ RD
Sbjct: 587 PDRHT--IQQIENAVNNQKAEVMEITRSATENELESLPGMNVRETFESKVSKALNKARDD 644
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 645 AGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 704
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 705 KDDYSPESRGFVENSYLR 722
Score = 42.0 bits (97), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 476 VIPQPAIVKPLAMWTGKQILSLVI 499
>gi|448734900|ref|ZP_21717120.1| DNA-directed RNA polymerase subunit A' [Halococcus salifodinae DSM
8989]
gi|445799530|gb|EMA49909.1| DNA-directed RNA polymerase subunit A' [Halococcus salifodinae DSM
8989]
Length = 984
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
++RTVISPDP L + +VG+PE VA+ +T V+ N E +Q V NG + HPG R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVAEEMTQTMNVNERNIEEARQYVRNGAETHPGANR 449
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+ L++ PG + +ETLE I++ L RD AG N
Sbjct: 727 IDNAYERIDELITTYENDELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFAEDNP 786
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA SG++GS +N++QM ACVGQQA+ G+R+ G+++R+L H+
Sbjct: 787 AVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEDRTLSHY 831
>gi|123979330|gb|ABM81490.1| RNA polymerase II largest subunit [Asahinea scholanderi]
Length = 983
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E+ +S + R+ L++ PG + ET E+ + K L+ RD
Sbjct: 586 PDRHT--IQQIEKAVSTQKDEVTDITRSATENELESLPGMNVRETFESKVSKALNKARDD 643
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 644 AGTVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 703
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 704 KDDYSPESRGFVENSYLR 721
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 475 VIPQPAIVKPLAMWTGKQILSLVI 498
>gi|119643674|gb|ABL85582.1| RNA polymerase II largest subunit [Punctelia hypoleucites]
Length = 1004
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 224 VVNEFEQLLQFHVAAYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 284 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 337
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 50/106 (47%), Positives = 65/106 (61%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + +T E+ ++ L+ RD AG A L N + MA +GSKGS INI+Q
Sbjct: 639 RLEASPGMNIRQTFESKVMNSLNQARDQAGAATEDSLKDLNNAITMARAGSKGSTINIAQ 698
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M A VGQQA+ GKR+P GF RSLPHF K S+G V+ +LR
Sbjct: 699 MTAIVGQQAVEGKRIPFGFKYRSLPHFTKDDYSAPSRGFVENSYLR 744
Score = 39.7 bits (91), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
+IP PAI+KP WTGKQ+ S++L P
Sbjct: 495 VIPQPAIIKPTPRWTGKQMISMVLPP 520
>gi|443918878|gb|ELU39223.1| DNA-directed RNA polymerase II largest subunit [Rhizoctonia solani
AG-1 IA]
Length = 1531
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 178 VISEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 237
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A LTYPERV N E L+ LV NGP ++PG
Sbjct: 238 SARTVITGDPNLMLDEVGVPRSMAMNLTYPERVTPYNIEWLQMLVRNGPREYPG 291
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 48/105 (45%), Positives = 68/105 (64%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ +PG + E+ E+ + +EL++ RD GK L N M ++GSKGSFINISQM
Sbjct: 597 LRAEPGMTIRESFESHVNRELNMARDKTGKDAQDSLKNDNNVKQMVVAGSKGSFINISQM 656
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
CVGQQ++ GKR+P GF +R+LPHF+K S+G V+ +LR
Sbjct: 657 SGCVGQQSVEGKRIPFGFKHRTLPHFNKDDYCAESRGFVENSYLR 701
>gi|388855841|emb|CCF50625.1| probable RPO21-DNA-directed RNA polymerase II, 215 KD subunit
[Ustilago hordei]
Length = 1784
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ HCA F++++ +G P MQ + + + RLKGK+GR RGNL GKRV+F
Sbjct: 303 ILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGNLMGKRVNF 362
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L++ +VG+P+ +A+ LTYPERV N+ L +LV NGP+ +PG
Sbjct: 363 SARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG 416
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 132 YIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSK 191
YI+ L+ + G + E+ EA + + L+ RD G L N M ++GSK
Sbjct: 708 YIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAEASLPDFNAVKQMVVAGSK 767
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S+G V+ +LR
Sbjct: 768 GSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLR 821
>gi|443896740|dbj|GAC74083.1| ngg1-interacting factor 3 protein NIF3L1 [Pseudozyma antarctica
T-34]
Length = 1947
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ HCA F++++ +G P MQ + + + RLKGK+GR RGNL GKRV+F
Sbjct: 465 ILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSVRARLKGKEGRLRGNLMGKRVNF 524
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L++ +VG+P+ +A+ LTYPERV N+ L +LV NGP+ +PG
Sbjct: 525 SARTVITGDPLLELDEVGVPKSIARNLTYPERVTAYNRAWLSELVRNGPNDYPG 578
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/124 (41%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S+ + YI L+ + G + E+ EA + + L+ RD G L N
Sbjct: 860 ISDAKAAVMDYIEYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAESSLPDFNN 919
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S+G V+
Sbjct: 920 VKQMVVAGSKGSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVEN 979
Query: 241 -FLR 243
+LR
Sbjct: 980 SYLR 983
>gi|83320468|gb|ABC02861.1| RNA polymerase II largest subunit, partial [Orphella haysii]
Length = 750
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A F+N+E SG+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 231 IIEEFEALLQFHVATFMNNELSGLPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 290
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPN+ I QVG+P +A+ LT PE V N L+ +V NGP +HPG
Sbjct: 291 SARTVITGDPNISIDQVGVPRSIARNLTVPEAVTPYNIATLQMMVRNGPTEHPG 344
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 52/120 (43%), Positives = 73/120 (60%)
Query: 121 LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN 180
+++E Y + + IR + +L+ PG + +E+ E + EL+ RD +GK + L N
Sbjct: 630 IINECYERVDELIRTAQEDKLECLPGMTLKESFEHKVNFELNRARDQSGKIVQRRLKEDN 689
Query: 181 GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
M +GSKGSFIN+SQM ACVGQQ + GKR+P GF R+LPHF K P SKG V+
Sbjct: 690 NVRQMVDAGSKGSFINVSQMTACVGQQNVEGKRIPFGFRYRTLPHFCKDDYSPQSKGFVE 749
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ +L + L +L E I+PPP IMKPK LWTGKQI+SL++ +C
Sbjct: 476 KFTKRDCFLEADLVMNLLMTLPEWDGIVPPPCIMKPKMLWTGKQIYSLVIPKGTNC 531
>gi|394998757|gb|AFN44297.1| RNA polymerase II largest subunit, partial [Fulgensia fulgens]
Length = 355
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPEAVTPYNIQKLHQLVKNGPNEHPG 316
>gi|394998781|gb|AFN44309.1| RNA polymerase II largest subunit, partial [Xanthomendoza fallax]
Length = 355
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSXDEVGVPRSIARTLTYPETVTPYNIHKLHQLVRNGPNEHPG 316
>gi|394998753|gb|AFN44295.1| RNA polymerase II largest subunit, partial [Caloplaca scotoplaca]
Length = 356
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
>gi|71019559|ref|XP_760010.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
gi|46099536|gb|EAK84769.1| hypothetical protein UM03863.1 [Ustilago maydis 521]
Length = 1774
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 81/114 (71%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ HCA F++++ +G P MQ + + + RLKGK+GR RGNL GKRV+F
Sbjct: 302 ILADFEQLLQFHCATFMDNDIAGQPQAMQSSGRPIKSIRARLKGKEGRLRGNLMGKRVNF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DP L++ +VG+P+ +A+ LTYPERV N+ L +LV NGP+ +PG
Sbjct: 362 SARTVITGDPLLELDEVGVPKSIARNLTYPERVTPYNRAWLSELVRNGPNDYPG 415
Score = 93.2 bits (230), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 68/114 (59%), Gaps = 2/114 (1%)
Query: 132 YIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSK 191
YI+ L+ + G + E+ EA + + L+ RD G L N M +SGSK
Sbjct: 707 YIKYARHDWLKVEAGMTLRESFEANVNRVLNQARDDVGNHAETSLPDFNNVKQMVVSGSK 766
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GSFINISQM ACVGQQ++ GKR+P GF +RSLPHF K P S+G V+ +LR
Sbjct: 767 GSFINISQMSACVGQQSVEGKRIPFGFRHRSLPHFTKDDFTPESRGFVENSYLR 820
>gi|358057836|dbj|GAA96338.1| hypothetical protein E5Q_03004 [Mixia osmundae IAM 14324]
Length = 2471
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ G P MQ ++ + + RLKGK+GR RGNL GKRVDF
Sbjct: 324 ILDEFEQLLQWHIATYMDNDLPGQPQAMQKSGRAVKSIRARLKGKEGRLRGNLMGKRVDF 383
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+PE +AK LTYPERV N L+ LV GPD+ PG
Sbjct: 384 SARTVITGDPNLELDEVGVPESIAKNLTYPERVTPYNITALQALVAKGPDELPG 437
Score = 98.6 bits (244), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 71/114 (62%), Gaps = 2/114 (1%)
Query: 132 YIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSK 191
+I + ++ +PG + ET E+ + L+ RD AG++ + L SN M ++GSK
Sbjct: 729 FISKAQQDLIEPEPGMTIRETFESKVTGSLNRARDTAGQSAERSLAASNNVKQMVVAGSK 788
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GSFINISQM ACVGQQ + GKR+P GF RSLPHF K P ++G V+ +LR
Sbjct: 789 GSFINISQMSACVGQQIVEGKRIPFGFRYRSLPHFTKDDHTPEARGFVENSYLR 842
Score = 42.0 bits (97), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPPAI+KPK +WTGKQI S+ +
Sbjct: 595 LLPPPAIVKPKPMWTGKQILSMCI 618
>gi|119514066|gb|ABL75806.1| RNA polymerase II largest subunit [Tephromela atra]
Length = 989
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
Score = 91.7 bits (226), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/112 (45%), Positives = 64/112 (57%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L + PG + +T E+ + K L RD AG L N MA SGSKGS
Sbjct: 610 RSATENELGSLPGMNVRQTFESKVSKALDKARDDAGTVTENSLKDLNNATQMARSGSKGS 669
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 670 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 721
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/26 (61%), Positives = 22/26 (84%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
+IP PAI+KP+ +WTGKQI SL++ P
Sbjct: 475 VIPQPAIVKPRLMWTGKQILSLVIPP 500
>gi|119514056|gb|ABL75801.1| RNA polymerase II largest subunit [Protoblastenia calva]
Length = 358
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +AK LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIAKTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
>gi|123979332|gb|ABM81491.1| RNA polymerase II largest subunit [Masonhalea richardsonii]
Length = 993
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 317
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 79/138 (57%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E+ ++ + ++ L++ PG + ET E+ + K L+ RD
Sbjct: 597 PDRHT--IQQIEKAVNLQKDEVAKITKSATENELESLPGMNVRETFESKVSKALNKARDD 654
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG A + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 655 AGTATEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 714
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 715 KDDYSPESRGFVENSYLR 732
Score = 42.4 bits (98), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 486 VIPQPAIVKPLAMWTGKQILSLVI 509
>gi|119643730|gb|ABL85585.1| RNA polymerase II largest subunit [Xanthoparmelia conspersa]
Length = 1000
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 216 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 275
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 276 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 329
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/105 (43%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + T E+ ++ +L+ RD AG A L N + M+ +GSKGS INI+Q+
Sbjct: 632 LEPSPGMNIRMTFESKVMADLNKARDKAGGAAQDSLPDYNDFVQMSRAGSKGSGINIAQI 691
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+A VGQQA+ GKR+P GF+ R+LPHF K P S+G ++ +LR
Sbjct: 692 MALVGQQAVEGKRIPFGFNYRTLPHFSKDDYSPTSRGFIENSYLR 736
Score = 39.3 bits (90), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNA 340
K+ R+ +L+ ++ E IP PAI+KP WTGKQI S++L P N
Sbjct: 461 KICRRDNFLTKEQVMNIMLWVPEWDGTIPQPAILKPTPRWTGKQIISMVL------PKNL 514
Query: 341 NLK 343
NL+
Sbjct: 515 NLE 517
>gi|113707380|gb|ABI36589.1| RNA polymerase II largest subunit [Flavoparmelia caperata]
Length = 1008
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 215 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 274
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 275 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 328
Score = 95.5 bits (236), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E ++ ++ R+ L++ PG + ET E+ + K L+ RD
Sbjct: 597 PDRHT--IQQIENAVNNQKAEVLEIPRSATENELESLPGMNVRETFESKVSKALNKARDD 654
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 655 AGAVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 714
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 715 KDDYSPESRGFVENSYLR 732
Score = 42.7 bits (99), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/24 (70%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SLI+
Sbjct: 486 VIPQPAIVKPLAMWTGKQILSLII 509
>gi|110669614|gb|ABG81902.1| RNA polymerase II largest subunit [Canoparmelia caroliniana]
Length = 1016
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 336
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 77/138 (55%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E ++ ++ R+ L++ PG + ET E+ + K L+ RD
Sbjct: 605 PDRHT--IQQIENAVNNQKAEVLEITRSATENELESLPGMNVRETFESKVSKALNKARDD 662
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ KR+P GF R+LPHF
Sbjct: 663 AGTVTEKSLKDLNNAPQMARSGSKGSTINISQMTAVVGQQSVEAKRIPFGFKYRTLPHFT 722
Query: 228 KFSKDPASKGNVK--FLR 243
K P SKG V+ +LR
Sbjct: 723 KDDYSPESKGFVENSYLR 740
Score = 42.0 bits (97), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 494 VIPQPAIVKPLAMWTGKQILSLVI 517
>gi|397135965|gb|AFO11477.1| RNA polymerase I, partial [Lipomyces starkeyi]
Length = 794
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF++RTVIS
Sbjct: 108 LQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDFSARTVISG 167
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL + QVG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 168 DPNLALDQVGVPRSIARTLTYPEIVTPYNIHKLTQLVRNGPNEHPG 213
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/131 (40%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ + + I ++ RL +PG + E+ E + K L+ RD AG++
Sbjct: 488 MRNITNTIAQAKREVQQIILDAQANRLPPEPGMTLRESFEQKVSKVLNTARDTAGRSAET 547
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L +N M ++GSKGSFINISQM ACVGQQ + GKRVP GF R+LPHF K P
Sbjct: 548 SLTEANNVKQMVVAGSKGSFINISQMSACVGQQMVEGKRVPFGFSYRTLPHFTKDDYSPE 607
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 608 SRGFIENSYLR 618
Score = 41.2 bits (95), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI KPK LWTGKQ+FS+ +
Sbjct: 371 VIPQPAIQKPKPLWTGKQMFSMAI 394
>gi|291195697|gb|ADD84565.1| RNA polymerase II largest subunit [Racodium rupestre]
Length = 225
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/114 (45%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ + +P +Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 73 VVDEFFSLLQFHVATYMDNDIASVPKAIQKSGRPVKAIRARLKSKEGRLRGNLMGKRVDF 132
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LT+PE V+ N + L QLV NGP++HPG
Sbjct: 133 SARTVITGDPNLDLDQVGVPRSIARTLTFPEMVNAYNIQKLTQLVRNGPNEHPG 186
>gi|119514039|gb|ABL75792.1| RNA polymerase II largest subunit [Loxospora ochrophaea]
Length = 975
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/117 (49%), Positives = 77/117 (65%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQ----PKSKSRGLIQRLKGKQGRFRGNLSGKR 56
++ E E LQ H A +++++ +G P +Q P SR RLKGK GR RGNL GKR
Sbjct: 204 IVHEFGELLQFHVATYMDNDIAGQPQALQKSGRPVKSSRA---RLKGKDGRLRGNLMGKR 260
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 261 VDFSARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 317
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 66/112 (58%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L+ PG + ET E+ + K L+ RD AG + L N + MA SGSKGS
Sbjct: 610 RSATENELEPLPGMNVRETFESKVSKALNTARDDAGTVTEKSLKDLNNAIQMARSGSKGS 669
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ+ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 670 TINISQMTAVVGQQSAEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 721
>gi|403417006|emb|CCM03706.1| predicted protein [Fibroporia radiculosa]
Length = 1621
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 152 VITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 211
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A LT+PERV N +L++LV NGP +PG
Sbjct: 212 SARTVITGDPNLDLDEVGVPKSIAMNLTFPERVTPYNIAYLQELVRNGPTTYPG 265
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/106 (44%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
RL+ PG + E+ E+ + +EL++ RD G+ + L N M ++GSKGSFINISQ
Sbjct: 564 RLKAAPGMTIRESFESRVERELNLARDQNGQYAQKNLKEDNNVKQMVVAGSKGSFINISQ 623
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M CVGQQ + G+R+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 624 MSVCVGQQIVEGRRIPYGFRHRTLPHFTKDDFGPEARGFVENSYLR 669
>gi|110669625|gb|ABG81907.1| RNA polymerase II largest subunit [Echinoplaca strigulacea]
Length = 1017
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P VA+ LTYPE V N + L QLV NGP+ HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIQKLHQLVKNGPNDHPG 336
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 68/114 (59%), Gaps = 3/114 (2%)
Query: 133 IRAM-ESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSK 191
I AM ++ L+ PG + ET E+++ KEL+ R+ +G ++ L N L M+ SGSK
Sbjct: 631 ITAMAQANELEPLPGMTVRETFESLVAKELNDARNESGSTVVKRLKDLNNTLAMSNSGSK 690
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
GS INI+QM A VGQQ + G+ GF RSLPHF K P S G ++ +LR
Sbjct: 691 GSQINIAQMSAAVGQQNVEGQTYSLGFAYRSLPHFTKDDYSPESGGFIENSYLR 744
>gi|394998763|gb|AFN44300.1| RNA polymerase II largest subunit, partial [Letrouitia parabola]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 IVSEFEQLLQFHVATYMDNDIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 316
>gi|394998749|gb|AFN44293.1| RNA polymerase II largest subunit, partial [Caloplaca isidiigera]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|397135926|gb|AFO11458.1| RNA polymerase I, partial [Sporopachydermia lactativora]
Length = 871
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 1/106 (0%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G P + + + + RLKGK+GR RGNL GKRVDF++RTVIS
Sbjct: 109 LQFHVATYMDNDIAGQPQALHKSGRPIKAIRARLKGKEGRLRGNLMGKRVDFSARTVISG 168
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
DPNL++ QVG+P +A+ LTYPE V N + L +LV NGP++HPG
Sbjct: 169 DPNLELDQVGVPRSIARTLTYPETVTPYNIQRLSELVRNGPNEHPG 214
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/131 (41%), Positives = 75/131 (57%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +++ K E + L+ PG + T E+++ L+ RD+AGK+
Sbjct: 488 MREITTTIADAKKKVEEITLKAQRDELELLPGMTLRSTFESLVTSVLNQARDNAGKSSEV 547
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M ++GSKGSFINISQM ACVGQQ + GKRVP GF +R+LPHF K P
Sbjct: 548 NLKNDNNVKQMVVAGSKGSFINISQMSACVGQQIVEGKRVPFGFADRTLPHFTKDDYSPE 607
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 608 SKGFVENSYLR 618
Score = 39.7 bits (91), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KPK LWTGKQ+ S+ +
Sbjct: 372 VIPQPAILKPKPLWTGKQMVSMAI 395
>gi|394998785|gb|AFN44311.1| RNA polymerase II largest subunit, partial [Xanthoria aureola]
gi|394998787|gb|AFN44312.1| RNA polymerase II largest subunit, partial [Xanthoria candelaria]
gi|394998791|gb|AFN44314.1| RNA polymerase II largest subunit, partial [Xanthoria parietina]
gi|394998793|gb|AFN44315.1| RNA polymerase II largest subunit, partial [Xanthoria polycarpa]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFESLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPG 316
>gi|189030833|gb|ABD97897.2| RNA polymerase II largest subunit [Fistulina antarctica]
Length = 411
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 216 IITEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 275
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P+ +A LT+PERV N HL++LV NGP PG
Sbjct: 276 SARTVITGDPNLELDEVGVPKSIAMNLTFPERVTPYNISHLQELVRNGPQTWPG 329
>gi|119643888|gb|ABL85593.1| RNA polymerase II largest subunit [Protopannaria pezizoides]
Length = 1016
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVTEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 336
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L+ PG + ET E+ + K L+ RD AG + L N MALSGSKGS
Sbjct: 629 RSATENELEPLPGMNVRETFESKVSKALNKARDDAGTVTEKSLKDLNNATQMALSGSKGS 688
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P SKG V+ +LR
Sbjct: 689 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESKGFVENSYLR 740
Score = 38.9 bits (89), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+P PAI+KP+ WTGKQI SL++
Sbjct: 494 ILPQPAILKPRPKWTGKQIISLVV 517
>gi|397135852|gb|AFO11421.1| RNA polymerase I, partial [Hanseniaspora valbyensis]
Length = 871
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 65/154 (42%), Positives = 93/154 (60%), Gaps = 12/154 (7%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I + + LQ H A +++++ +G P +Q + + + RLKGK+GR R NL GKRVDF
Sbjct: 101 VIHDFEKLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRSNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL++ QVG+P +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLELDQVGVPLSIAKTLTYPEIVTPYNIDRLTQLVKNGPNQHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAE 150
+ Y+K +G LQ Q G E
Sbjct: 221 DNGTRIDLRYNK--------RAGDLQLQYGWKVE 246
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/118 (43%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + + L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 502 KVEEVTKEAQENLLSAKHGMTLRESFEDNVVRFLNEARDKAGRSAEVNLKSLNNVKQMVS 561
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SGSKGSFINI+QM ACVGQQ++ GKR+P GF +R+LPHF K P SKG V+ +LR
Sbjct: 562 SGSKGSFINIAQMSACVGQQSVEGKRIPFGFADRTLPHFSKDDYSPESKGFVENSYLR 619
>gi|394998755|gb|AFN44296.1| RNA polymerase II largest subunit, partial [Caloplaca cf. squamosa
Gaya 49]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVRNGPNEHPG 316
>gi|403175763|ref|XP_003334524.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375171744|gb|EFP90105.2| DNA-directed RNA polymerase II subunit A [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 1703
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 307 VITEFETLLQWHIATYMDNDLPGQPQALQKSGRPIKSLRARLKGKEGRLRGNLMGKRVDF 366
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A+ LTYPERV N +L++LV NGP ++PG
Sbjct: 367 SARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEYPG 420
Score = 108 bits (270), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 81/138 (58%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PDK + A +SE + I + +LQ +PG + E+ EA + + L+ RD+
Sbjct: 689 PDK--ATMEAITNFISEAKREVSETISLAQEDKLQPEPGMTIRESFEAKVNRALNTARDN 746
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG++ Q L N M +GSKGSFINISQM ACVGQQ++ GKR+P GF R+LPHF
Sbjct: 747 AGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPYGFKYRTLPHFT 806
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 807 KDDYSPESRGFVENSYLR 824
Score = 43.9 bits (102), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPPAI+KPK LWTGKQI S+ +
Sbjct: 577 VVPPPAILKPKPLWTGKQILSMCI 600
>gi|394998751|gb|AFN44294.1| RNA polymerase II largest subunit, partial [Caloplaca scoriophila]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|394998743|gb|AFN44290.1| RNA polymerase II largest subunit, partial [Caloplaca cinnamomea]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|83320474|gb|ABC02864.1| RNA polymerase II largest subunit, partial [Olpidium brassicae]
Length = 585
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/137 (43%), Positives = 88/137 (64%), Gaps = 4/137 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A ++N+E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 53 VIEEFESLLQFHVATYMNNELAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 112
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I +VG+P +A+ LT+PE V N + +++LV NGP++HPG ++R
Sbjct: 113 SARTVITGDPNLSIDEVGVPRSIARNLTFPEIVTPYNIDRMQELVRNGPNEHPGAKFVIR 172
Query: 117 AKERLLSEGYSKCEGYI 133
+ Y K G I
Sbjct: 173 DTGERIDLRYHKRSGDI 189
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++ ++ + I + +L PG + E+ E + +EL+ RD AG + L N
Sbjct: 454 INTAKARVQEIILQAQQDKLLPMPGMTIRESFENQVNRELNTARDTAGSSAQNSLREDNN 513
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 514 VKQMVVAGSKGSFINISQMSACVGQQNVEGKRIPFGFKYRTLPHFSKDDHSPESRGFVEN 573
Query: 241 -FLR 243
+LR
Sbjct: 574 SYLR 577
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI KPK LWTGKQIFSL +
Sbjct: 326 LPVPAIFKPKPLWTGKQIFSLTI 348
>gi|397135938|gb|AFO11464.1| RNA polymerase I, partial [Candida tepae]
Length = 872
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFEALLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 161 SARTVITGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEHPG 214
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E +K + I + +L +PG + E+ E + + L+ RD AG++ L N
Sbjct: 496 IAEAKNKVQEIIFEAQMNKLAPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P SKG ++
Sbjct: 556 VKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LWTGKQ+ SL +
Sbjct: 372 VVPQPAILKPKPLWTGKQMVSLCI 395
>gi|123979326|gb|ABM81488.1| RNA polymerase II largest subunit [Lecanora achariana]
Length = 791
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 205 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 264
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 265 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 318
Score = 98.2 bits (243), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 54/112 (48%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L+T PG + ET E+ + K L+ RD AG A L N + MA SGSKGS
Sbjct: 611 RSATENVLETLPGMNVRETFESKVSKALNKARDEAGTATEDSLKDLNNAIQMARSGSKGS 670
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 671 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 722
Score = 42.0 bits (97), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 24/27 (88%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KP+++WTGKQ+ SL++ PN
Sbjct: 476 VIPQPAILKPRSMWTGKQLISLVI-PN 501
>gi|302503240|ref|XP_003013580.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
gi|291177145|gb|EFE32940.1| hypothetical protein ARB_00027 [Arthroderma benhamiae CBS 112371]
Length = 1635
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 195 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 254
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 255 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 308
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 615 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 674
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 675 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 719
>gi|394998737|gb|AFN44287.1| RNA polymerase II largest subunit, partial [Caloplaca carphinea]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|394998735|gb|AFN44286.1| RNA polymerase II largest subunit, partial [Caloplaca arnoldii
subsp. obliterata]
Length = 355
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPG 316
>gi|83320424|gb|ABC02839.1| RNA polymerase II largest subunit, partial [Polychytrium
aggregatum]
Length = 1016
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 92/158 (58%), Gaps = 14/158 (8%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A ++N++ SGIP Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 225 VINEFEKLLQYHVATYMNNDISGIPKAQQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 284
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL I QVG+P +A+ LT+PE V N L++ V NGP +HPG ++R
Sbjct: 285 SARTVITGDPNLSIDQVGVPRSIARNLTFPENVTPYNIARLQKYVQNGPMEHPGAKYVIR 344
Query: 117 AKERLLSEGYSKCEGYIRAMESGR-LQTQPGCSAEETL 153
+ YSK GR + QPG E L
Sbjct: 345 DNGERIDLRYSKV---------GRDIHLQPGYKVERHL 373
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 68/113 (60%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L PG + + EA++ KEL+ RD AGK+ + L N M +GSKG
Sbjct: 635 IAKAQRDELAVLPGMTIRLSFEALVNKELNRARDMAGKSAERSLKEQNNVKQMVTAGSKG 694
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM CVGQQ + GKR+P GF +RSLPHF K P S+G V+ +LR
Sbjct: 695 SFINISQMTGCVGQQNVEGKRIPFGFKDRSLPHFTKDDHSPESRGFVENSYLR 747
>gi|38091164|emb|CAE46436.1| RNA polymerase II largest subunit [Haynesina germanica]
Length = 414
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 59/114 (51%), Positives = 75/114 (65%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E E LQ H I++E +G P Q K +GL +RL GK GR RGNL GKR DF
Sbjct: 215 VLEELVELLQFHVTTMIDNEVTGQPQAKQESGKPIKGLRERLVGKAGRVRGNLMGKRCDF 274
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI DPNL I +VG+P +A LTYPERV N +KQLV NGP++HPG
Sbjct: 275 SARTVIGGDPNLSIDEVGVPRSIALNLTYPERVTKFNLHRMKQLVENGPNEHPG 328
>gi|68473217|ref|XP_719414.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
gi|46441230|gb|EAL00529.1| hypothetical protein CaO19.7655 [Candida albicans SC5314]
Length = 1728
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E K + I + +L+ +PG + E+ E + + L+ RD AG++
Sbjct: 676 MRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 736 SLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 43.1 bits (100), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPA++KPK LWTGKQ+ SL +
Sbjct: 559 VIPPPAVVKPKQLWTGKQLLSLAI 582
>gi|397135934|gb|AFO11462.1| RNA polymerase I, partial [Candida petrohuensis]
Length = 868
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFEALLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 161 SARTVITGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIHRLTQLVRNGPNEHPG 214
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 76/124 (61%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++E +K + I ++ +L +PG + E+ E + + L+ RD AG++ L N
Sbjct: 496 IAEAKNKVQEIILEAQANKLAPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKELNN 555
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M ++GSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P SKG ++
Sbjct: 556 VKQMVIAGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRSLPHFTKDDHSPESKGFIEN 615
Query: 241 -FLR 243
+LR
Sbjct: 616 SYLR 619
Score = 40.4 bits (93), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PA++KPK LWTGKQI SL +
Sbjct: 372 VVPQPAVLKPKPLWTGKQIVSLCI 395
>gi|328849370|gb|EGF98552.1| hypothetical protein MELLADRAFT_50989 [Melampsora larici-populina
98AG31]
Length = 1786
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ G P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 309 VITEFETLLQWHIATYMDNDLPGQPQALQKSGRPVKSLRSRLKGKEGRLRGNLMGKRVDF 368
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A+ LTYPERV N +L++LV NGP ++PG
Sbjct: 369 SARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNITYLQELVRNGPTEYPG 422
Score = 110 bits (276), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/138 (42%), Positives = 83/138 (60%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PDK G + + +SE + I + +LQ +PG + E+ EA + + L++ RD+
Sbjct: 691 PDK--GTMETITKFISEAKLEVANVISMAQEDKLQPEPGMTIRESFEAKVNRALNMARDN 748
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG++ Q L N M +GSKGSFINISQM ACVGQQ++ GKR+P GF R+LPHF
Sbjct: 749 AGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPYGFKYRTLPHFT 808
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 809 KDDYSPESRGFVENSYLR 826
Score = 43.9 bits (102), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPPAI+KPK LWTGKQI S+ +
Sbjct: 579 VVPPPAILKPKPLWTGKQILSMCI 602
>gi|435845619|ref|YP_007307869.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
gi|433671887|gb|AGB36079.1| DNA-directed RNA polymerase, subunit A' [Natronococcus occultus
SP4]
Length = 975
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNVDEARRYVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVDAG 474
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIEDANDRVEELIEAYERGELESLPGRTIDETLEMKIMQTLSRARDNAGNIADEHFDN 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 778 DNPAVVMAESGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|409722466|ref|ZP_11269916.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
gi|448722478|ref|ZP_21705012.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
gi|445789203|gb|EMA39892.1| DNA-directed RNA polymerase subunit A' [Halococcus hamelinensis
100A6]
Length = 985
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
++RTVISPDP L + +VG+PE VA +T V+ N E +Q V NG + HPG R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVASEMTQTMNVNERNIEEARQYVRNGSEVHPGANR 449
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 70/119 (58%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++ Y + + I E+G L++ P + +ETLE I++ L RD AG N
Sbjct: 728 MANAYERIDELIETYENGDLESLPSRTVDETLEMKIMQTLGKARDSAGDIAEDHFARDNP 787
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+VMA SG++GS +N++QM ACVGQQA+ G+R+ G+++R+L H+ + + G V+
Sbjct: 788 AVVMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEDRTLSHYQENDLSAEAHGFVE 846
>gi|397135920|gb|AFO11455.1| RNA polymerase I, partial [Nakazawaea holstii]
Length = 870
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 99 VIAEYEALLQFHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 158
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 159 SARTVISGDPNLDLDQVGVPRSIARTLTYPEMVTPYNIHKLTELVRNGPNEHPG 212
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 74/131 (56%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R+ ++ K + I ++ +L +PG + E+ E + + L+ RD GKA
Sbjct: 487 VRSITDTINAAKDKVQEIITKAQNNQLPPEPGMTLRESFEQNVSQVLNQARDDVGKATAD 546
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +GSKGS INISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 547 SLQDWNNVKQMVSAGSKGSNINISQMSACVGQQIVEGKRIPFGFSDRSLPHFTKDDYSPE 606
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 607 SKGFVENSYLR 617
Score = 41.2 bits (95), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
IP P I+KPK LWTGKQ+ S+++ P N++ K +T+
Sbjct: 371 IPEPTIVKPKPLWTGKQMLSMVI------PKGINIERKDEKFTY 408
>gi|293630664|gb|ADE58976.1| RNA polymerase II largest subunit [Dothideomycetes sp. TRN 123]
Length = 319
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ +E + LQ H A +++++ +G+P +Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 198 VTEEFVQLLQYHVATYMDNDIAGVPKALQKSGRPVKSIRARLKSKEGRLRGNLMGKRVDF 257
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + QVG+P +A+ LT+PE V+ N L+QLV NGP++HPG
Sbjct: 258 SARTVITGDPNLDLDQVGVPRSIARTLTFPEVVNAYNIHKLQQLVRNGPNEHPG 311
>gi|397135810|gb|AFO11400.1| RNA polymerase I, partial [Ogataea glucozyma]
Length = 870
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P+ +A+ L+YPE V N + L +LV NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPKSIARTLSYPEIVTPYNIQKLTELVRNGPNEHPG 214
Score = 95.1 bits (235), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/118 (44%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K + I ++ L+ +PG + E+ E + K L+ RD AGK+ L SN M
Sbjct: 500 KVQEVIIDAQNNLLEAEPGMTVRESFEQKVSKLLNEARDSAGKSAETSLKDSNNVKQMVT 559
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K SKG V+ +LR
Sbjct: 560 AGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDYSAESKGFVENSYLR 617
Score = 39.3 bits (90), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KPK LW+GKQI S+ +
Sbjct: 372 VVPQPAILKPKPLWSGKQILSMCI 395
>gi|394998789|gb|AFN44313.1| RNA polymerase II largest subunit, partial [Xanthoria elegans]
Length = 355
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LIQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L +LV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHELVKNGPNEHPG 316
>gi|238487198|ref|XP_002374837.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
gi|317143741|ref|XP_001819667.2| DNA-directed RNA polymerase II subunit RPB1 [Aspergillus oryzae
RIB40]
gi|220699716|gb|EED56055.1| DNA-dependent RNA polymerase II largest subunit, putative
[Aspergillus flavus NRRL3357]
Length = 1744
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 303 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 362
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A+ LTYPE V N + L+QLV NGP++HPG
Sbjct: 363 SARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPG 416
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E + E + E + L+ PG + ET E+ + + L+ RD AG + L
Sbjct: 700 ENCVRERKKEVETITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKD 759
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 760 LNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 819
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 820 VENSYLR 826
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQI S+ L
Sbjct: 574 VIPPPAILKPRPRWTGKQIISMAL 597
>gi|110669637|gb|ABG81913.1| RNA polymerase II largest subunit [Lecanora hybocarpa]
Length = 1016
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 336
Score = 95.9 bits (237), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 52/112 (46%), Positives = 67/112 (59%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L++ PG + ET E+ + K L+ RD AG+ L N MA SGSKGS
Sbjct: 629 RSATDNELESLPGMNVRETFESKVSKALNNARDEAGRVTEDSLKDLNNATQMARSGSKGS 688
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 689 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 740
Score = 42.0 bits (97), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ +WTGKQI SL++
Sbjct: 494 VIPQPAILKPRPMWTGKQILSLVI 517
>gi|354545641|emb|CCE42368.1| hypothetical protein CPAR2_200110 [Candida parapsilosis]
Length = 1746
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+ + E K + I + +L +PG + E+ E + + L+ RD AG++ L
Sbjct: 681 KTIQEAKQKVQEIILDAQHNKLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDL 740
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P SKG V
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFV 800
Query: 240 K--FLR 243
+ +LR
Sbjct: 801 ENSYLR 806
>gi|110669645|gb|ABG81917.1| RNA polymerase II largest subunit, partial [Hypocenomyce scalaris]
Length = 1027
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 2/114 (1%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
I +D+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 236 ISKDFEDLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 295
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 296 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVAPYNIHKLHQLVKNGPNEHPG 349
Score = 96.3 bits (238), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L++ PG + ET E+ + K L+ RD AG A L N + MA SGSKGS INISQM
Sbjct: 649 LESLPGMNVRETFESKVSKALNKARDDAGTATEDSLKDLNNAIQMARSGSKGSTINISQM 708
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 709 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 753
Score = 39.7 bits (91), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP+ WTGKQI SL++
Sbjct: 507 VIPQPAILKPRPKWTGKQIISLVI 530
>gi|238880428|gb|EEQ44066.1| DNA-directed RNA polymerase II largest subunit [Candida albicans
WO-1]
Length = 1742
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E K + I + +L+ +PG + E+ E + + L+ RD AG++
Sbjct: 676 MRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 736 SLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 43.1 bits (100), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPA++KPK LWTGKQ+ SL +
Sbjct: 559 VIPPPAVVKPKQLWTGKQLLSLAI 582
>gi|9955855|dbj|BAB12227.1| RNA polymerase II largest subunit [Aspergillus oryzae]
gi|83767526|dbj|BAE57665.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391867452|gb|EIT76698.1| RNA polymerase II, large subunit [Aspergillus oryzae 3.042]
Length = 1748
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 81/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 303 VVREFESLLQYHVATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 362
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A+ LTYPE V N + L+QLV NGP++HPG
Sbjct: 363 SARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIDKLQQLVSNGPNEHPG 416
Score = 93.6 bits (231), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 53/127 (41%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E + E + E + L+ PG + ET E+ + + L+ RD AG + L
Sbjct: 700 ENCVRERKKEVETITASATDNTLEPLPGMNVRETFESKVSRALNNARDEAGSETEKSLKD 759
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G
Sbjct: 760 LNNAIQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGF 819
Query: 239 VK--FLR 243
V+ +LR
Sbjct: 820 VENSYLR 826
Score = 41.6 bits (96), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPPAI+KP+ WTGKQI S+ L
Sbjct: 574 VIPPPAILKPRPRWTGKQIISMAL 597
>gi|448731185|ref|ZP_21713488.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
gi|445792779|gb|EMA43380.1| DNA-directed RNA polymerase subunit A' [Halococcus saccharolyticus
DSM 5350]
Length = 984
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/117 (48%), Positives = 76/117 (64%), Gaps = 1/117 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKDGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLR 116
++RTVISPDP L + +VG+PE VA +T V+ N E +Q V NG + HPG R
Sbjct: 393 SARTVISPDPTLSLNEVGVPERVASEMTQTMNVNERNIEEARQYVRNGAETHPGANR 449
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+ L++ PG + +ETLE I++ L RD AG N
Sbjct: 727 IDNAYERIDELITTYENDELESLPGRTVDETLEMKIMQTLGKARDSAGDIAEDHFAEDNP 786
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+VMA SG++GS +N++QM ACVGQQA+ G+R+ G+++R+L H+
Sbjct: 787 AVVMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEDRTLSHY 831
>gi|394998739|gb|AFN44288.1| RNA polymerase II largest subunit, partial [Caloplaca chalybaea]
Length = 355
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+ QE LQ H A ++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 203 LTQEFENLLQFHVATYMDNNIAGLPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 316
>gi|448316023|ref|ZP_21505661.1| DNA-directed RNA polymerase subunit A' [Natronococcus jeotgali DSM
18795]
gi|445610369|gb|ELY64143.1| DNA-directed RNA polymerase subunit A' [Natronococcus jeotgali DSM
18795]
Length = 975
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 4/143 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 332 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 391
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVISPDP L + +VG+P+ VA +T V N + ++ V NGP+ HPG + R
Sbjct: 392 SARTVISPDPTLSLNEVGVPDRVASEMTQTMNVTERNVDEARRYVSNGPEAHPGANYVRR 451
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
R L CE +++G
Sbjct: 452 PDGRRLKVTEKNCEQLAEKVDAG 474
Score = 91.3 bits (225), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 67/108 (62%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ + + + E I A E G L++ PG + +ETLE I++ LS RD+AG +
Sbjct: 718 DETIEDADDRVEELIEAYERGELESLPGRTVDETLEMKIMQTLSRARDNAGNIADEHFDD 777
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
N +VMA SG++GS +N++QM VGQQA+ G+R+ G+++R+L H+
Sbjct: 778 DNPAVVMAESGARGSMLNLTQMAGAVGQQAVRGERINRGYEDRTLSHY 825
>gi|397135944|gb|AFO11467.1| RNA polymerase I, partial [Sugiyamaella smithiae]
Length = 868
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 63/143 (44%), Positives = 90/143 (62%), Gaps = 5/143 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P +A+ LTYPE V N + L +LV NGP++HPG ++R
Sbjct: 161 SARTVISGDPNLDLDQVGVPRSIARTLTYPEIVTPYNIQKLTELVRNGPNEHPGAKYVIR 220
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+ Y K G I A++ G
Sbjct: 221 DTGERIDLRYHKRAGDI-ALQYG 242
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R ++E K + I ++ L +PG + E+ E + + L+ RD+AG++
Sbjct: 489 MRDIANTIAEAKQKVQDIIADAQNNTLSPEPGMTLRESFEHNVSRVLNQARDNAGRSAEL 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M +SGSKGSFINISQM+ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 549 SLKDLNNVKQMVVSGSKGSFINISQMMACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
Score = 40.0 bits (92), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IPPPAI KPK +WTGKQ+ SL +
Sbjct: 373 IPPPAIWKPKPMWTGKQMVSLCI 395
>gi|242071129|ref|XP_002450841.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
gi|241936684|gb|EES09829.1| hypothetical protein SORBIDRAFT_05g019520 [Sorghum bicolor]
Length = 1874
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/126 (47%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E + LQ H A + ++E G P Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 298 IIEEFSQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRVRGNLMGKRVDF 357
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDPN+ I +VG+P +A LTYPE V N E LK+LVLNGP PG AK
Sbjct: 358 SARTVITPDPNINIDEVGVPWSIALNLTYPETVTPYNIERLKELVLNGPHPPPGKTGAKY 417
Query: 120 RLLSEG 125
+ +G
Sbjct: 418 IIREDG 423
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 65/108 (60%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ +L+ +PG + E+ E + + L+ RD+ G L SN M +GSKG
Sbjct: 712 IKQARDEQLKAEPGHTMMESFENKVNEALNKARDNVGSNVQNNLSESNNLKAMVSAGSKG 771
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
SFINISQM ACVGQQ I GKR+P GF +R+LPHF K P S+G V+
Sbjct: 772 SFINISQMAACVGQQNIEGKRIPFGFSDRTLPHFTKDDYGPESRGFVE 819
Score = 41.6 bits (96), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
IP PAI+KP+ +WTGKQ+F+LI+
Sbjct: 573 IPAPAILKPRPIWTGKQVFNLII 595
>gi|397135856|gb|AFO11423.1| RNA polymerase I, partial [Saturnispora dispora]
Length = 870
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL++ QVG+P +A+ LTYPE V N + L ++V NGP++HPG
Sbjct: 161 SARTVISGDPNLELDQVGVPRSIARTLTYPEIVTPYNIQKLTEMVRNGPNEHPG 214
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 75/134 (55%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ + E K + I+ + L+ +PG + E+ E + K L+ RD AGK+
Sbjct: 484 PETMKTITETIKEAKEKVQLVIKDAQQNLLEPEPGMTVRESFEQKVSKILNEARDSAGKS 543
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L SN M +GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K
Sbjct: 544 AETSLKNSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDY 603
Query: 232 DPASKGNVK--FLR 243
SKG V+ +LR
Sbjct: 604 SAESKGFVENSYLR 617
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/24 (62%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IPPP I+KPK LW+GKQ+ SL +
Sbjct: 372 VIPPPCILKPKPLWSGKQMMSLCI 395
>gi|354609473|ref|ZP_09027429.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
gi|353194293|gb|EHB59795.1| DNA-directed RNA polymerase subunit A' [Halobacterium sp. DL1]
Length = 964
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 327 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 386
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VA +T V+ N E K+ V NGP+ HPG
Sbjct: 387 SARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNDQNLERAKRYVRNGPEGHPG 440
Score = 95.1 bits (235), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 75/127 (59%), Gaps = 3/127 (2%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ + Y + + I E+G L++ PG + +ETLE I++ L RD AG
Sbjct: 707 ARERIDEAIESAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLGKARDSAGDVAE 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L HF
Sbjct: 767 ENFAQDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTLSHFAPNDLSS 826
Query: 234 ASKGNVK 240
A+ G V+
Sbjct: 827 AAHGFVE 833
>gi|241959608|ref|XP_002422523.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
gi|223645868|emb|CAX40531.1| DNA-directed RNA polymerase II subunit, putative [Candida
dubliniensis CD36]
Length = 1735
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 76/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E K + I + +L+ +PG + E+ E + + L+ RD AG++
Sbjct: 676 MRDVTKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 736 SLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
>gi|448524734|ref|XP_003869005.1| Rpo21 protein [Candida orthopsilosis Co 90-125]
gi|380353358|emb|CCG22868.1| Rpo21 protein [Candida orthopsilosis]
Length = 1732
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPG 401
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/126 (43%), Positives = 73/126 (57%), Gaps = 2/126 (1%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+ + E K + I + +L +PG + E+ E + + L+ RD AG++ L
Sbjct: 681 KTIQEAKQKVQEIILDAQHNKLDPEPGMTLRESFEHNVSRVLNQARDTAGRSAEMSLKDL 740
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P SKG V
Sbjct: 741 NNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFV 800
Query: 240 K--FLR 243
+ +LR
Sbjct: 801 ENSYLR 806
>gi|110669650|gb|ABG81919.1| RNA polymerase II largest subunit, partial [Lichinella iodopulchra]
Length = 1020
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
+ LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+SRTVI
Sbjct: 235 QLLQFHVATYMDNDIAGQPQALQKSGRPIKSIRSRLKGKEGRLRGNLMGKRVDFSSRTVI 294
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ DPNL + +VG+P +AKILTYPE V N L QLV NGP HPG
Sbjct: 295 TGDPNLSLDEVGVPISIAKILTYPETVTPYNIHKLHQLVRNGPSGHPG 342
Score = 97.8 bits (242), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 53/112 (47%), Positives = 68/112 (60%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R+ L+ PG + ET E+ + K L+ RD AG A + L N + MA SGSKGS
Sbjct: 635 RSATENELEPLPGMNVRETFESKVSKALNAARDEAGSATEKSLKDLNNAIQMARSGSKGS 694
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 695 TINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 746
>gi|120561209|gb|ABM26990.1| RNA polymerase II largest subunit, partial [Phragmidium sp. MB]
Length = 1013
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ G P MQ + + + RLKGK+GR RGNL GKRVDF
Sbjct: 225 IITEFETLLQWHIATYMDNDLPGQPQAMQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 284
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNLQ+ QVG+P +A+ LTYPERV N +L++LV NGP ++PG
Sbjct: 285 SARTVITGDPNLQLDQVGVPYSIARNLTYPERVTPYNISYLQELVQNGPTEYPG 338
Score = 107 bits (267), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 82/138 (59%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PDK + A +S+ + I A + +L +PG + E+ EA + + L++ RD+
Sbjct: 607 PDK--ATMEAITNFISDAKREVSDVIIAAQEDKLLPEPGMTIRESFEAKVNRALNMARDN 664
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG++ Q L N M +GSKGSFINISQM ACVGQQ++ GKR+P GF R+LPHF
Sbjct: 665 AGRSAEQSLKDDNNVKQMVTAGSKGSFINISQMSACVGQQSVEGKRIPYGFKYRTLPHFT 724
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 725 KDDYSPESRGFVENSYLR 742
Score = 43.5 bits (101), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++PPPAI+KPK LWTGKQI S+ +
Sbjct: 495 VVPPPAILKPKPLWTGKQILSMCI 518
>gi|392572014|gb|EIW65186.1| beta and beta-prime subunits of DNA dependent RNA-polymerase
[Trametes versicolor FP-101664 SS1]
Length = 1748
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +GIP +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 296 VINEFEQLLQFHVATYMDNDIAGIPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 355
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LT+PERV N +L++LV NGP +PG
Sbjct: 356 SARTVITGDPNLELDEVGVPRSIAMNLTFPERVTPYNITYLQELVRNGPTVYPG 409
Score = 97.8 bits (242), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 69/107 (64%), Gaps = 2/107 (1%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
RL+ PG + E+ E + +EL++ RD +G+ + L N M ++GSKGSFINIS
Sbjct: 707 ARLKAAPGMTIRESFEKRVERELNLARDQSGQYAQKNLKEDNNVKQMVVAGSKGSFINIS 766
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
QM CVGQQ++ GKR+P GF +R+LPHF K P ++G V+ +LR
Sbjct: 767 QMSVCVGQQSVEGKRIPFGFRHRTLPHFTKDDFSPEARGFVENSYLR 813
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KPK LWTGKQI S+ +
Sbjct: 567 VPTPAIIKPKPLWTGKQILSMCI 589
>gi|113957512|gb|ABI49119.1| RNA polymerase II largest subunit [Coccocarpia erythroxyli]
Length = 997
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 204 VVSEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 263
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP+ HPG
Sbjct: 264 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNDHPG 317
Score = 81.3 bits (199), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 59/112 (52%), Gaps = 2/112 (1%)
Query: 134 RAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGS 193
R L+ PG + ET E+ + + L+ RD AG + L N MA SGSKGS
Sbjct: 610 RIATDNELEPLPGMNVRETFESKVARALNKARDDAGTVTEESLKDINNATQMARSGSKGS 669
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
INISQM A GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 670 TINISQMTAXXXXXXXEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 721
Score = 38.9 bits (89), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 20/24 (83%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
++P PAI+KP+ WTGKQI SL++
Sbjct: 475 VLPQPAILKPRPRWTGKQIISLVI 498
>gi|394998795|gb|AFN44316.1| RNA polymerase II largest subunit, partial [Dimelaena radiata]
Length = 355
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK GR RGNL GKRVDF
Sbjct: 203 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRSRLKGKDGRVRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 316
>gi|302662921|ref|XP_003023110.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
gi|291187089|gb|EFE42492.1| hypothetical protein TRV_02753 [Trichophyton verrucosum HKI 0517]
Length = 1744
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 724 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 783
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 784 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 828
>gi|110669612|gb|ABG81901.1| RNA polymerase II largest subunit [Cladonia caroliniana]
Length = 1016
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P VA+ LTYPE V N L QLV NGP+ HPG
Sbjct: 283 SARTVITGDPNLSLDEVGVPRSVARTLTYPETVTPYNIHKLHQLVKNGPNDHPG 336
Score = 94.7 bits (234), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 51/105 (48%), Positives = 66/105 (62%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L++ PG + ET E+ + K L+ RD AG+ + L N MA SGSKGS INISQM
Sbjct: 636 LESLPGMNVRETFESKVSKALNNARDDAGRVTEESLKDLNNATQMARSGSKGSTINISQM 695
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 696 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 740
Score = 43.5 bits (101), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 25/36 (69%), Gaps = 6/36 (16%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANL 342
+IP PAI+KP+ LWTGKQI SL++ PV NL
Sbjct: 494 VIPQPAIVKPRPLWTGKQILSLVM------PVGLNL 523
>gi|120561219|gb|ABM26995.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1018
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 221 VIDEFEQLLQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 280
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I +VG+P +A+ LT+PE V N E +++LV NGP++HPG
Sbjct: 281 SARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPG 334
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + + L+ PG + ET E + +EL+ RDH+G++ + L N M +SGSKG
Sbjct: 632 ILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKG 691
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 692 SFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFSKDDYGPESRGFVENSYLR 744
Score = 44.7 bits (104), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ ++ L ++ + +IP PAI+KP+ LWTGKQ+ ++I+ N +C
Sbjct: 466 KFTKRDSFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINC 521
>gi|327294163|ref|XP_003231777.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
gi|326465722|gb|EGD91175.1| DNA-directed RNA polymerase II largest subunit [Trichophyton rubrum
CBS 118892]
Length = 1744
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 724 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 783
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 784 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 828
>gi|386001093|ref|YP_005919392.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|312183603|gb|ADQ42371.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
gi|357209149|gb|AET63769.1| DNA-directed RNA polymerase subunit A' [Methanosaeta harundinacea
6Ac]
Length = 878
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/115 (48%), Positives = 78/115 (67%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++ SG+P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 259 IIEDLWELLQYHITTFLDNTVSGVPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDPNL I +VG+P +A L+ P V+ N E ++ V G DKHPG+
Sbjct: 319 SARTVISPDPNLSINEVGVPLEIAMELSVPLVVNGRNIEVMRDFVRRGADKHPGV 373
Score = 92.0 bits (227), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 46/122 (37%), Positives = 74/122 (60%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E +L+ I A ++G L+ PG + +ETLE I++ L RD+AG + L
Sbjct: 659 EDVLNAARENVTKLIDAYKAGELEPLPGRTLDETLEMRIMQTLGKARDNAGSIAGRYLGI 718
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +VMA+SG++GS +N++QM ACVGQQ++ G+R+ G++ R+LPHF + + G
Sbjct: 719 DNSGVVMAVSGARGSMLNLTQMAACVGQQSVRGERIRRGYEGRTLPHFRRGDLGAEAHGF 778
Query: 239 VK 240
V+
Sbjct: 779 VQ 780
>gi|296822712|ref|XP_002850330.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
gi|238837884|gb|EEQ27546.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma otae CBS
113480]
Length = 1748
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 724 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 783
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 784 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 828
Score = 38.1 bits (87), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKP 332
++P PAI+KP+ W+GKQ+ S++L P
Sbjct: 576 VLPQPAILKPRPRWSGKQMISMVLPP 601
>gi|83320434|gb|ABC02844.1| RNA polymerase II largest subunit, partial [Basidiobolus ranarum]
Length = 1015
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 223 VIDEFEQLLQFHVATYMDNDIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 282
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I +VG+P +A+ LT+PE V N E +++LV NGP++HPG
Sbjct: 283 SARTVITGDPNLSIDEVGVPRSIARNLTFPEMVTPYNIERMQELVRNGPNEHPG 336
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 53/113 (46%), Positives = 71/113 (62%), Gaps = 2/113 (1%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + + L+ PG + ET E + +EL+ RDH+G++ + L N M +SGSKG
Sbjct: 634 ILSAQQDTLECAPGMTIRETFENKVNRELNRARDHSGRSAEKSLKEENNVKQMVVSGSKG 693
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 694 SFINISQMSACVGQQNVEGKRIPFGFKFRTLPHFTKDDYGPESRGFVENSYLR 746
Score = 44.3 bits (103), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDC 336
K R+ ++ L ++ + +IP PAI+KP+ LWTGKQ+ ++I+ N +C
Sbjct: 468 KFTKRDCFVDKALVMNILMWVADWDGVIPTPAILKPQPLWTGKQLVTMIVPKNINC 523
>gi|397135942|gb|AFO11466.1| RNA polymerase I, partial [Trichomonascus petasosporus]
Length = 873
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/114 (46%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VVNEFESLLQYHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ QVG+P+ +A+ LTYPE + N + L +LV NGP++HPG
Sbjct: 161 SARTVITGDPNLELDQVGVPKSIARTLTYPEIITPYNIQRLTELVRNGPNEHPG 214
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
++ ++ + I ++S L PG + ET EA K + RD AGK+ + L N
Sbjct: 498 IATAKAEVQKLILKVQSNDLSPDPGMTLRETFEAHASKAFNQARDDAGKSAEKSLKELNN 557
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +SGSKGSFINISQM ACVGQQ + GKR+P GF +R+LPHF K S+G ++
Sbjct: 558 VKQMVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFQDRTLPHFTKDDFSGESRGFIEN 617
Query: 241 -FLR 243
+LR
Sbjct: 618 SYLR 621
>gi|315056155|ref|XP_003177452.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
gi|311339298|gb|EFQ98500.1| DNA-directed RNA polymerase II subunit RPB1 [Arthroderma gypseum
CBS 118893]
Length = 1748
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 724 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 783
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 784 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 828
>gi|397135940|gb|AFO11465.1| RNA polymerase I, partial [Spencermartinsiella europaea]
Length = 868
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 62/143 (43%), Positives = 91/143 (63%), Gaps = 5/143 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VINEFEALLQYHVATYMDNDIAGQPRALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+ DPNL + QVG+P+ +A+ LTYPE V N + L +LV NGP++HPG ++R
Sbjct: 161 SARTVITGDPNLDLDQVGVPKSIARTLTYPEIVTPYNIQRLTELVRNGPNEHPGAKYIIR 220
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+ Y K G I A++ G
Sbjct: 221 DTGERIDLRYHKRAGDI-ALQYG 242
Score = 102 bits (253), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 56/131 (42%), Positives = 77/131 (58%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R +SE K + I +S +L +PG + E+ E + + L+ RD+AG++
Sbjct: 489 MRDIANTISEAKQKVQEIILEAQSNKLSPEPGMTLRESFEHNVSRVLNQARDNAGRSAEM 548
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M ++GSKGSFINIS M ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 549 SLKELNNVKQMVVAGSKGSFINISLMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 608
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 609 SKGFVENSYLR 619
>gi|326480447|gb|EGE04457.1| DNA-directed RNA polymerase II largest subunit [Trichophyton
equinum CBS 127.97]
Length = 1712
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 724 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 783
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 784 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 828
>gi|45439293|gb|AAS64314.1| DNA-dependent RNA polymerase II largest subunit [Amanita
phalloides]
Length = 1007
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A +++++ +G+P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 217 VINEFEQLLQFHVATYMDNDIAGVPQALQKSGRPVKAIRARLKGKEGRLRGNLMGKRVDF 276
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P +A LTYPERV N +L++LV NGP +PG
Sbjct: 277 SARTVITGDPNLELDEVGVPRSIAMNLTYPERVTPYNIGYLQELVRNGPTAYPG 330
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 47/105 (44%), Positives = 70/105 (66%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ +PG + E+ E++ +EL++ RD +GK + + N M ++GSKGSFINISQM
Sbjct: 630 LKAKPGMTLRESFESMAERELNLARDRSGKYAQEHMKEDNNVKQMVVAGSKGSFINISQM 689
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
CVGQQ++ G+R+P GF +RSLPHF K P ++G V+ +LR
Sbjct: 690 SVCVGQQSVEGRRIPFGFRHRSLPHFTKDDFGPDARGFVENSYLR 734
>gi|123979338|gb|ABM81494.1| RNA polymerase II largest subunit [Buellia fimbriata]
Length = 366
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++T+G P +Q + + + RLKGK GR RGNL GKRVDF
Sbjct: 203 IIEEFETLLQFHVATYMSNDTAGQPQALQKSGRPVKAIRSRLKGKDGRVRGNLMGKRVDF 262
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 263 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 316
>gi|425770649|gb|EKV09117.1| DNA-directed RNA polymerase [Penicillium digitatum Pd1]
gi|425771955|gb|EKV10383.1| DNA-directed RNA polymerase [Penicillium digitatum PHI26]
Length = 1733
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H A +++++ +G P MQ ++ + L RLKGK+GR R NL GKRVDF
Sbjct: 299 VIREFESLLQYHIATYMDNDIAGQPTAMQKGNRPVKALRSRLKGKEGRLRQNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL++ +VG+P A+ILTYPE V N E L++L+ NGP+ HPG
Sbjct: 359 SARTVITGDPNLRLDEVGVPYSTARILTYPEVVTPWNIEKLQKLIANGPNIHPG 412
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 76/138 (55%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H + E + + E + L+ PG + ET E+ + + L+ RD
Sbjct: 687 PDQH--TINKIEEAVRNRKQEVEEITASATENTLEALPGMNVRETFESKVSRALNNARDE 744
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG A + L N + MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 745 AGDATEKSLKDLNNAIQMARSGSKGSAINISQMTALVGQQSVEGKRIPFGFKYRTLPHFT 804
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 805 KDDYSPESRGFVENSYLR 822
>gi|397135814|gb|AFO11402.1| RNA polymerase I, partial [Ambrosiozyma monospora]
Length = 870
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 101 VISEFEALLQYHVATYMDNDIAGQPQALQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDF 160
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P+ +AK L+YPE V N + L +LV NGP++HPG
Sbjct: 161 SARTVISGDPNLDLDQVGVPKSIAKTLSYPEIVTPYNIQKLTELVRNGPNEHPG 214
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/134 (41%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ ++ K +G I ++ RL+ +PG + E+ E + L+ RD AGK+
Sbjct: 484 PDTMKNITETIATAKDKVQGVIMDAQNNRLEAEPGMTVRESFEQKVSNILNKARDVAGKS 543
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L SN M +GSKGS+INISQM ACVGQQ + GKR+ GF +RSLPHF K
Sbjct: 544 AETSLKDSNNVKQMVTAGSKGSYINISQMSACVGQQIVEGKRINFGFADRSLPHFTKDDY 603
Query: 232 DPASKGNVK--FLR 243
SKG V+ +LR
Sbjct: 604 SAESKGFVENSYLR 617
>gi|326472846|gb|EGD96855.1| DNA-dependent RNA polymerase II largest subunit [Trichophyton
tonsurans CBS 112818]
Length = 1657
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +GIP MQ ++ I+ RLKGK+GR R NL GKRVDF
Sbjct: 304 VVREFESLLQYHVATYMDNDIAGIPQAMQKSNRPVKAIRGRLKGKEGRLRQNLMGKRVDF 363
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGPD HPG
Sbjct: 364 SARTVITGDPNLSLDEVGVPISIAQTLTYPEVVTPYNIHRLGQLVDNGPDVHPG 417
Score = 97.4 bits (241), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/105 (49%), Positives = 67/105 (63%), Gaps = 2/105 (1%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + ET E+ + + L+ RD AG A + L SN + MA SGSKGS INISQM
Sbjct: 701 LEALPGMNVRETFESKVSRALNNARDEAGTATEKSLKDSNNAVQMARSGSKGSTINISQM 760
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
A VGQQ++ GKR+P GF R+LPHF K P S+G V+ +LR
Sbjct: 761 TAVVGQQSVEGKRIPFGFKYRTLPHFTKDDYSPESRGFVENSYLR 805
>gi|324120526|dbj|BAJ78654.1| RNA polymerase II largest subunit [Isonychia japonica]
Length = 1530
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/111 (49%), Positives = 76/111 (68%), Gaps = 1/111 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSR 62
E+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF++R
Sbjct: 281 ENTKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDFSAR 340
Query: 63 TVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
TVI+PDPNL I QVG+P +A+ LT+PE V N EH++ LV G ++PG
Sbjct: 341 TVITPDPNLHIDQVGVPRSIAQNLTFPEIVTPFNLEHMQDLVRRGNSQYPG 391
Score = 87.4 bits (215), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TV++ L+ + +GI + +A TY E + A K
Sbjct: 642 GRFYGNI---------QTVVNNWLLLEGHSIGIGDTIADPQTYIE-IQKAIK-------- 683
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AKE ++ I+ + L+ PG + +T E + + L+ R
Sbjct: 684 ----------KAKEDVIE--------VIQKAHNMDLEPTPGNTLRQTFENQVNRILNDAR 725
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M ++GSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 726 DKTGGSAKKSLTEYNNLKAMVVAGSKGSNINISQVIACVGQQNVEGKRIPFGFRKRTLPH 785
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 786 FIKDDYGPESRGFVE 800
Score = 44.7 bits (104), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 22/26 (84%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P PAI+KPK LWTGKQIFSLI+ N
Sbjct: 550 MPQPAILKPKPLWTGKQIFSLIIPGN 575
>gi|452983085|gb|EME82843.1| hypothetical protein MYCFIDRAFT_58269 [Pseudocercospora fijiensis
CIRAD86]
Length = 1753
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/130 (44%), Positives = 85/130 (65%), Gaps = 4/130 (3%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A +++++ +G+P ++Q + + + RLK K+GR RGNL GKRVDF++RTVI+
Sbjct: 309 LQYHVATYMDNDIAGMPKSIQKSGRPLKAIRARLKSKEGRLRGNLMGKRVDFSARTVITG 368
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRAKERLLSE 124
DPNL + QVG P A+ILT+PERV N L++LV NGP++HPG ++R +
Sbjct: 369 DPNLDLDQVGCPRSTARILTFPERVTLYNIHKLQELVRNGPNEHPGAKHIIREDGSRIDL 428
Query: 125 GYSKCEGYIR 134
Y K G I+
Sbjct: 429 RYHKRAGEIQ 438
Score = 88.6 bits (218), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 109/240 (45%), Gaps = 19/240 (7%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVIS-- 66
L L +F SE IPL + + LIQ + GRF L G + +
Sbjct: 595 LPLGLNIFRKSEEGDIPL---LEKEEPVLIQNGELVWGRFTKKLVGASGGGVVHYIFNDK 651
Query: 67 -PDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEG 125
PD ++ + +I Y +HH + V PD L+ E + +
Sbjct: 652 GPDATVEFFNAA-----QRICCY-WLLHHGFSVGIGDTV---PDAD--LVAKIEEQVVKY 700
Query: 126 YSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVM 185
++ E Y+ ++ ++ PG + ET E L R+ AG + ++ N M
Sbjct: 701 KTQVEEYMSEVQIDNMEASPGMTVRETFENKTKTALDNARNGAGDVAYKGMNACNNVGTM 760
Query: 186 ALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SGSKGS N+SQM A VGQQ++ GKR+P GF +R LPHF K PAS+G V+ +LR
Sbjct: 761 VKSGSKGSTTNVSQMTAAVGQQSLEGKRLPFGFKDRVLPHFPKDDYSPASRGFVENSYLR 820
>gi|195566227|ref|XP_002105705.1| GD15986 [Drosophila simulans]
gi|194204074|gb|EDX17650.1| GD15986 [Drosophila simulans]
Length = 1150
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 83/173 (47%), Gaps = 36/173 (20%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGF 218
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGF 794
Score = 41.6 bits (96), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>gi|119643527|gb|ABL85575.1| RNA polymerase II largest subunit [Flavopunctelia flaventior]
Length = 995
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 216 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 275
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N L QLV NGP++HPG
Sbjct: 276 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIHKLHQLVKNGPNEHPG 329
Score = 97.1 bits (240), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 56/138 (40%), Positives = 78/138 (56%), Gaps = 4/138 (2%)
Query: 108 PDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDH 167
PD+H ++ E ++ ++ R+ L++ PG + ET E+ + K L+ RD
Sbjct: 598 PDRHT--IQQIENAVNNQKAEVLEITRSATENELESLPGMNVRETFESKVSKALNKARDD 655
Query: 168 AGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFD 227
AG + L N MA SGSKGS INISQM A VGQQ++ GKR+P GF R+LPHF
Sbjct: 656 AGAVTEKSLKDLNNATQMARSGSKGSTINISQMTAVVGQQSVEGKRIPFGFKYRTLPHFT 715
Query: 228 KFSKDPASKGNVK--FLR 243
K P S+G V+ +LR
Sbjct: 716 KDDYSPESRGFVENSYLR 733
Score = 42.0 bits (97), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP PAI+KP A+WTGKQI SL++
Sbjct: 487 VIPQPAIVKPLAMWTGKQILSLVI 510
>gi|361128129|gb|EHL00082.1| putative DNA-directed RNA polymerase III subunit RPC1 [Glarea
lozoyensis 74030]
Length = 869
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 80/128 (62%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L +RL+S Y + I+ G+L+ GC +E+LE I +LS +R+ AG
Sbjct: 229 PNKLSPVKRLVSIAYKETNEDIQKYNEGKLEKAAGCDLDESLENSISGKLSGVREQAGNY 288
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
C++ L N PL+MA SGSKGS IN++QM+A VGQQ I GKRV GF +R+LPHF K ++
Sbjct: 289 CIETLSKWNSPLIMAKSGSKGSNINVAQMVAVVGQQIIGGKRVAEGFQDRTLPHFLKNAR 348
Query: 232 DPASKGNV 239
+KG V
Sbjct: 349 HALAKGFV 356
Score = 46.6 bits (109), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%), Gaps = 3/47 (6%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPV 338
+LSS F + +T I +I+KP+ALWTGKQ+FS++++PN+ PV
Sbjct: 192 LLSSKENFFDRKTFTNI---SILKPEALWTGKQVFSVLMRPNKLSPV 235
>gi|119643638|gb|ABL85580.1| RNA polymerase II largest subunit [Parmotrema tinctorum]
Length = 386
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 224 VVNEFEQLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRLRGNLMGKRVDF 283
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P +A+ LTYPE V N + L QLV NGP++HPG
Sbjct: 284 SARTVITGDPNLSLDEVGVPRSIARTLTYPETVTPYNIQKLHQLVKNGPNEHPG 337
>gi|358030892|dbj|BAL15355.1| RNA polymerase II largest subunit, partial [Olpidium bornovanus]
Length = 838
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 57/114 (50%), Positives = 78/114 (68%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+E LQ H IN+E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 34 IIEEFSNLLQFHVNTMINNEGAGSPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 93
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I +VGIP +A+ LT+PE V N + ++QLV NGP++HPG
Sbjct: 94 SARTVITGDPNLSIDEVGIPRSIARNLTFPEIVTPYNIDAMQQLVRNGPNEHPG 147
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 140 RLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQ 199
R++ PG + ET EA + L+ RD AGK+ Q L+P N M ++GSKGS+INISQ
Sbjct: 456 RMKPMPGMTIRETFEAQVNSALNTARDQAGKSAQQSLNPENNVKQMVVAGSKGSYINISQ 515
Query: 200 MIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
M ACVGQQ + GKR+P GF R+LP F K P S+G V+ +LR
Sbjct: 516 MTACVGQQNVEGKRIPFGFKYRTLPCFTKDDHTPESRGFVENSYLR 561
Score = 40.0 bits (92), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 281 KVRSRNGWLSSVLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNA 340
K+ R+ +L ++ + ++P PAI+KPK LWTGKQ+ S+++ P
Sbjct: 283 KMTKRDVFLDKAFVMNMAMWVPDWDGVLPIPAILKPKPLWTGKQMLSMLI------PKGV 336
Query: 341 NLKT 344
N++T
Sbjct: 337 NVQT 340
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,547,852,166
Number of Sequences: 23463169
Number of extensions: 269548309
Number of successful extensions: 539070
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 10820
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 519061
Number of HSP's gapped (non-prelim): 18983
length of query: 409
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 264
effective length of database: 8,957,035,862
effective search space: 2364657467568
effective search space used: 2364657467568
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 78 (34.7 bits)