BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13848
(409 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZL98|RPC1_CHICK DNA-directed RNA polymerase III subunit RPC1 OS=Gallus gallus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 46/61 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPPAI+KP LWTGKQ+FS ILKP+ DCPV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPAILKPVTLWTGKQVFSSILKPSDDCPVKANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRESDVAKKISHICFGMKSPEEMRQQA 32
>sp|A4IF62|RPC1_BOVIN DNA-directed RNA polymerase III subunit RPC1 OS=Bos taurus
GN=POLR3A PE=2 SV=1
Length = 1390
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (455), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 71.6 bits (174), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 44/58 (75%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQY 624
Score = 38.9 bits (89), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 24/32 (75%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + S E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSAEEMRQQA 32
>sp|O14802|RPC1_HUMAN DNA-directed RNA polymerase III subunit RPC1 OS=Homo sapiens
GN=POLR3A PE=1 SV=2
Length = 1390
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 179 bits (454), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/61 (52%), Positives = 45/61 (73%)
Query: 292 VLSSSLRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTF 351
+++S L ++ + V +PPP I+KP LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 567 IIASILVGKDEKIKVRLPPPTILKPVTLWTGKQIFSVILRPSDDNPVRANLRTKGKQYCG 626
Query: 352 K 352
K
Sbjct: 627 K 627
Score = 41.6 bits (96), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 356 MVKDQFRERNTACKISHVTFCVDSPTEIQQQS 387
MVK+QFRE + A KISH+ F + SP E++QQ+
Sbjct: 1 MVKEQFRETDVAKKISHICFGMKSPEEMRQQA 32
>sp|Q86AQ5|RPC1_DICDI DNA-directed RNA polymerase III subunit rpc1 OS=Dictyostelium
discoideum GN=polr3a PE=3 SV=1
Length = 1450
Score = 159 bits (403), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 70/112 (62%), Positives = 87/112 (77%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQ CA++INS+ G+PL M+P RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 299 IMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSG 358
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ +A +TYPERV N E L++ V+NGPD+HPG
Sbjct: 359 RTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG 410
Score = 144 bits (364), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 87/134 (64%), Gaps = 2/134 (1%)
Query: 108 PDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
PD P L R K ++ Y KC +++ ESG LQ GCS E+T EA + + LS IR
Sbjct: 689 PDIKPAEDLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIR 748
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D GK C+ +L N PL+M L GSKGS INI+QMI CVGQQ +NG R+PNGF NR+ PH
Sbjct: 749 DDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPH 808
Query: 226 FDKFSKDPASKGNV 239
F F+K+P SKG V
Sbjct: 809 FKHFAKNPKSKGFV 822
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVK 358
F + + +PPPAI+KP LWTGKQIF ++L+P+ V N +T+ R Y+ + K
Sbjct: 563 FADANEHIDLPPPAILKPVELWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPK 622
Query: 359 D---QFRERNTAC 368
D FR C
Sbjct: 623 DGYVYFRNSELMC 635
>sp|O94666|RPC1_SCHPO DNA-directed RNA polymerase III subunit rpc1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpc1 PE=2 SV=1
Length = 1405
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE++QL A++INSE G+ + P RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P +AKILT+PERV NK+HL+ + NGPD HPG
Sbjct: 360 RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Score = 140 bits (352), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+++ Y+ + +I G L+ QPG E TLEA I LS +RD
Sbjct: 696 DVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRD 755
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL P+N PL+MA GSKGS IN+SQM+ACVGQQ I+GKRVP+GF +RSLPHF
Sbjct: 756 DVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHF 815
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 816 HKNSKHPLAKGFV 828
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
T + +PPPAI+KP+ LWTGKQ+F++++KPNR V NL K R+++
Sbjct: 570 THIDLPPPAIIKPRCLWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFS 616
>sp|Q6BI69|RPC1_DEBHA DNA-directed RNA polymerase III subunit RPC1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=RPC1 PE=3 SV=2
Length = 1457
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 91/134 (67%), Gaps = 2/134 (1%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L + KE ++ + Y KC+ I G L+TQPGC+ E+TLEA I LS +R+
Sbjct: 712 DVIPGSDLKQKKELMVEQAYLKCDELIDLYNRGNLETQPGCNEEQTLEAKIGGLLSKVRE 771
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL +N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF
Sbjct: 772 EVGEICINELDSANAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHF 831
Query: 227 DKFSKDPASKGNVK 240
K SK P SKG V+
Sbjct: 832 TKNSKTPQSKGFVR 845
Score = 135 bits (340), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 9/127 (7%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPL------NMQPKSKSRGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS+++ L + RG QRLKGKQGRFRGNLSGK
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALLPSSGGGSKSSKPIRGFCQRLKGKQGRFRGNLSGK 368
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ N++ L++L+L+GP+ HPG
Sbjct: 369 RVDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNRKKLQKLILSGPNVHPGAN 428
Query: 114 -LLRAKE 119
LL+ E
Sbjct: 429 YLLKQNE 435
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 31/43 (72%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAI KP LWTGKQ+FSL++KPN+ V NL K + YT
Sbjct: 589 IPPPAIFKPVMLWTGKQVFSLLIKPNKKSNVVINLDAKNKTYT 631
>sp|P04051|RPC1_YEAST DNA-directed RNA polymerase III subunit RPC1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO31 PE=1
SV=1
Length = 1460
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 66/120 (55%), Positives = 87/120 (72%), Gaps = 10/120 (8%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--------RGLIQRLKGKQGRFRGNLS 53
+ E W++LQL A++INS++ + M P S + RG QRLKGKQGRFRGNLS
Sbjct: 312 MMEHWDYLQLTVAMYINSDS--VNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLS 369
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 370 GKRVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPG 429
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/43 (60%), Positives = 32/43 (74%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
IPPPAIMKP LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 592 IPPPAIMKPYYLWTGKQVFSLLIKPNHNSPVVINLDAKNKVFV 634
>sp|Q980R2|RPOA1_SULSO DNA-directed RNA polymerase subunit A' OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rpoA1
PE=1 SV=1
Length = 880
Score = 135 bits (340), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/132 (52%), Positives = 91/132 (68%), Gaps = 4/132 (3%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
+SRTVISPDPN+ I +VG+PE +AK LT PER+ N E L+Q V+NGPDK PG ++R
Sbjct: 321 SSRTVISPDPNISIDEVGVPEIIAKTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIR 380
Query: 117 AKERLLSEGYSK 128
R + Y K
Sbjct: 381 PDGRRIDLRYVK 392
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 68/112 (60%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
+ + I+ ++G L+ PG + EE+LE IL L +R AG + L P N VMA
Sbjct: 671 EVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMAR 730
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
+G++GS +NI+QM A +GQQ++ G+R+ G+ R+LPHF + P ++G +
Sbjct: 731 TGARGSVLNITQMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFI 782
>sp|P11512|RPOA1_SULAC DNA-directed RNA polymerase subunit A' OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoA1 PE=3 SV=2
Length = 880
Score = 133 bits (334), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 63/114 (55%), Positives = 84/114 (73%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H A + ++E G+P + R L QRLKGK+GRFRGNLSGKRVDF
Sbjct: 261 IIEDLWDLLQYHVATYFDNEIPGLPPAKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDF 320
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPNL I +VGIP +A++LT PERV + N E ++Q ++NGPDK PG
Sbjct: 321 SARTVISPDPNLSIDEVGIPYTIARMLTVPERVTNINIERIRQYIINGPDKWPG 374
Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/124 (39%), Positives = 77/124 (62%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ EGYS+ + YIR G+L+ PG + EE+LE+ IL L +R AG+ + L P N
Sbjct: 665 IKEGYSQVDEYIRKFNEGQLEPIPGRTIEESLESYILDTLDKLRKVAGEIATKYLDPFNN 724
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
+MA++G++GS +NI+QM A +GQQ++ G+R+ G+ R+L F P ++G VK
Sbjct: 725 VYIMAITGARGSELNITQMTALLGQQSVRGERIRRGYRERTLSLFKYGDIAPEARGFVKN 784
Query: 241 -FLR 243
F+R
Sbjct: 785 SFMR 788
>sp|P31813|RPOA1_THECE DNA-directed RNA polymerase subunit A' OS=Thermococcus celer
GN=rpoA1 PE=3 SV=1
Length = 905
Score = 128 bits (321), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 65/117 (55%), Positives = 86/117 (73%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ W+ LQ H +IN+ETSGIP K KS + L QRLKGK+GRFRGNLSGKR
Sbjct: 267 IIEDLWDLLQYHVTTYINNETSGIP---PAKHKSGRPLKTLSQRLKGKEGRFRGNLSGKR 323
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDP + I +VG+P +A LT PE+V N E L+++VLNGP+K+PG
Sbjct: 324 VNFSARTVISPDPMISINEVGVPMAIAMELTVPEKVTEFNFEKLRKMVLNGPEKYPG 380
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 1/114 (0%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
L R +E ++ E + I A +G L+ PG + EETLE+ I+ L+ RD+AGK
Sbjct: 679 ALDRIRE-IIREAEERVNRLIEAYRNGELEPIPGKTLEETLESKIMAALAEARDNAGKVA 737
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
+ L SN ++MA +G++G +NI+QM A +GQQ+I GKR+ G+ R L HF
Sbjct: 738 ERYLGMSNHAVIMAKTGARGKILNITQMAAMLGQQSIRGKRLYRGYRERVLTHF 791
>sp|P27625|RPC1_PLAFA DNA-directed RNA polymerase III subunit RPC1 OS=Plasmodium
falciparum PE=3 SV=1
Length = 2339
Score = 125 bits (314), Expect = 5e-28, Method: Composition-based stats.
Identities = 63/127 (49%), Positives = 81/127 (63%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L K+ LL +GY K I ++Q QPGC+ EETLE + L +R+ AGK C
Sbjct: 820 LTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVKSILDDLRNDAGKTCN 879
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q LH N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF NR+LPHF KD
Sbjct: 880 QYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGFINRTLPHFHFHCKDS 939
Query: 234 ASKGNVK 240
S+G V+
Sbjct: 940 ESRGFVQ 946
Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats.
Identities = 63/110 (57%), Positives = 78/110 (70%), Gaps = 3/110 (2%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N + LK L+ NG +K PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG 415
Score = 53.9 bits (128), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 35/55 (63%)
Query: 299 FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
F + + +P PAI+KPK LWTGKQ+ S+++KPN+ N + + R Y+ KF
Sbjct: 683 FSDASLYIELPIPAILKPKELWTGKQLISVLIKPNKKENTIINFEIQEREYSNKF 737
>sp|Q58445|RPOA1_METJA DNA-directed RNA polymerase subunit A' OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoA1 PE=3 SV=2
Length = 1341
Score = 124 bits (312), Expect = 9e-28, Method: Composition-based stats.
Identities = 63/141 (44%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W LQ H + ++E GIP + + L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWNLLQYHVNTYFDNEAPGIPPAKHRSGRPLKTLAQRLKGKEGRFRYNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
+SRTVISPDP L I +VG+PE VAK LT PE+V N E ++QL+ NG +KHPG+
Sbjct: 324 SSRTVISPDPCLSINEVGVPEVVAKELTVPEKVTKYNIERIRQLLRNGSEKHPGVNYVIR 383
Query: 120 RLLSEGYSKCEGYIRAMESGR 140
+++ ++ E ++ ES +
Sbjct: 384 KMIGRDGTEQEYKVKITESNK 404
Score = 92.4 bits (228), Expect = 5e-18, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 73/126 (57%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
L+ E++L E K + I E G L+ PG + EE+ EA I L RD AG +
Sbjct: 1118 LKEIEKVLDEAEEKVKEIIEKYERGELELLPGLNLEESREAYISNVLREARDKAGAIAER 1177
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N ++MA++G++G+ +N++QM AC+GQQ++ GKR+ G+ R LPHF+K
Sbjct: 1178 YLGLDNHAVIMAVTGARGNILNLTQMAACLGQQSVRGKRIFRGYRGRVLPHFEKGDLGAR 1237
Query: 235 SKGNVK 240
S G V+
Sbjct: 1238 SHGFVR 1243
>sp|P08968|RPC1_TRYBB DNA-directed RNA polymerase III subunit RPC1 OS=Trypanosoma brucei
brucei PE=3 SV=1
Length = 1530
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/110 (52%), Positives = 77/110 (70%), Gaps = 1/110 (0%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ A ++S G P N++ S + QRLK K GRFR NLSGKRVD++ R+
Sbjct: 312 ETWEMLQMRAARLLDSSLPGFPPNVR-TSDLKSYAQRLKSKHGRFRCNLSGKRVDYSGRS 370
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL + ++ +P HVA++LTYP+RV AN E +++LV NGP HPG
Sbjct: 371 VISPDPNLDVDELAVPLHVARVLTYPQRVFKANHELMRRLVRNGPHVHPG 420
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 88/129 (68%), Gaps = 1/129 (0%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P L + K +L+ C+G I++ ++GR+ PG + +++LEA + ELS +RD G A
Sbjct: 708 PELNKQKAAVLARSVEVCDGLIKSAKTGRMIPLPGLTVKQSLEARLNTELSKVRDECGTA 767
Query: 172 CLQELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
+Q L +N PL+M SGSKGS +NI+QM+ACVGQQ ++GKR+ + F +RSLPHF +F
Sbjct: 768 AVQTLSIHNNTPLIMVQSGSKGSALNIAQMMACVGQQTVSGKRILDAFQDRSLPHFHRFE 827
Query: 231 KDPASKGNV 239
+ PA++G V
Sbjct: 828 EAPAARGFV 836
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
T +P PAI+KP LWTGKQ+F LI++P+ + V + + + YT K
Sbjct: 580 TQFRLPIPAILKPVELWTGKQLFELIVRPSPEVDVLLSFEAPTKFYTRK 628
>sp|Q8SSC4|RPB1_ENCCU DNA-directed RNA polymerase II subunit RPB1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=RPB1 PE=3 SV=1
Length = 1599
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/150 (44%), Positives = 99/150 (66%), Gaps = 12/150 (8%)
Query: 2 IQEDWE-WLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
I D+E LQ H A FI+++ G+P +Q + + L RLKGK+GR RGNL GKRVDF
Sbjct: 259 IVRDYEQLLQFHVATFIDNDIGGLPQALQKSGRPLKSLSARLKGKEGRIRGNLMGKRVDF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVI+PDPN+ + +VG+P +AKI T+PE+V N + L++LV GP++HPG +LR
Sbjct: 319 SARTVITPDPNISLEEVGVPLEIAKIHTFPEKVTSFNIDRLEKLVRAGPNEHPGANYVLR 378
Query: 117 AKERLLSEGYSKC-----EGYI--RAMESG 139
+ + + +++ EGY+ R M+SG
Sbjct: 379 SDGQKIDLNFNRSDIRLEEGYVVERHMQSG 408
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 73/129 (56%)
Query: 112 PGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKA 171
P ++ E + + + I RL+ PG + +E+ E+ + L+ RD +G +
Sbjct: 667 PKTVKVVESAIRKAKEEVSALIENARQNRLERLPGMTMKESFESHLNLVLNRARDVSGTS 726
Query: 172 CLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
+ L +N M L+GSKGSFINISQ+ ACVGQQ + GKR+P GF +R+LPHF K
Sbjct: 727 AQRSLSENNNMKTMVLAGSKGSFINISQVTACVGQQNVEGKRIPFGFSHRTLPHFVKDDY 786
Query: 232 DPASKGNVK 240
S+G V+
Sbjct: 787 TGKSRGFVE 795
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 289 LSSVLSSSLR-FREHETSVIIPPPAIMKPKALWTGKQIFSLILKPN 333
L + + LR ++++ I+ PAI KP LWTGKQ+ S +L PN
Sbjct: 531 LGDAVQTGLRKGKDYDIMKILRKPAIAKPMRLWTGKQVLSFVL-PN 575
>sp|P41556|RPOA1_METVS DNA-directed RNA polymerase subunit A' OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rpoA1 PE=3 SV=1
Length = 889
Score = 122 bits (306), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 1/115 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + ++E GIP + R L QRLKGK+GRFR NL+GKRV+F
Sbjct: 264 IIEDLWDLLQYHINTYFDNEAPGIPPARHRSGRPLRTLAQRLKGKEGRFRHNLAGKRVNF 323
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL 114
++RTVISPDP L I +VGIPE +AK LT PE+V N E +++L+ NG DKHPG+
Sbjct: 324 SARTVISPDPRLSINEVGIPELIAKELTVPEKVTPYNIERIRKLIENGSDKHPGV 378
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 47/122 (38%), Positives = 67/122 (54%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
+ LL + S + + E G L PG EE+ EA I++ L RD GK + L
Sbjct: 670 QDLLDKAESDVQEIVERYEGGTLDPLPGRGIEESREAYIMQILGKARDDTGKVAEKYLSK 729
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
N +MA +G++GS +NI+ M A VGQQ++ G RV G+ R+LPHF + S D S G
Sbjct: 730 ENHAALMARTGARGSLLNITMMAASVGQQSVRGGRVFRGYRGRTLPHFGEGSLDAKSHGF 789
Query: 239 VK 240
V+
Sbjct: 790 VR 791
>sp|Q75A34|RPB1_ASHGO DNA-directed RNA polymerase II subunit RPB1 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=RPB1 PE=3 SV=2
Length = 1745
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 65/138 (47%), Positives = 90/138 (65%), Gaps = 4/138 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VIQESESLLQFHVATYMDNDIAGQPQAVQKSGRPIKSIRARLKGKEGRIRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 408 DNGDRIDLRYSKRAGDIQ 425
Score = 90.9 bits (224), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 70/118 (59%), Gaps = 2/118 (1%)
Query: 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMAL 187
K E + ++ L + G + E+ E +++ L+ RD AG++ L N M
Sbjct: 689 KVEEVTKEAQANLLTAKHGMTLRESFEDNVVRYLNEARDKAGRSAEVNLKDLNNVKQMVS 748
Query: 188 SGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
+GSKGSFINI+QM ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 749 AGSKGSFINIAQMSACVGQQSVEGKRIAFGFADRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
+IP P I+KPK LW+GKQ+ S+ +
Sbjct: 559 VIPTPTILKPKPLWSGKQLLSMAI 582
>sp|P04050|RPB1_YEAST DNA-directed RNA polymerase II subunit RPB1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPO21 PE=1
SV=2
Length = 1733
Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 90/137 (65%), Gaps = 4/137 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 82/154 (53%), Gaps = 7/154 (4%)
Query: 92 VHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEE 151
+H+ + + +GP +R ++E K + ++ L + G + E
Sbjct: 658 LHNGFSTGIGDTIADGP-----TMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRE 712
Query: 152 TLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAING 211
+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM ACVGQQ++ G
Sbjct: 713 SFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEG 772
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
KR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 773 KRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 39.7 bits (91), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%), Gaps = 1/27 (3%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILKPN 333
+IP PAI+KPK LW+GKQI S+ + PN
Sbjct: 559 VIPTPAIIKPKPLWSGKQILSVAI-PN 584
>sp|P25202|RPC1_GIAIN DNA-directed RNA polymerase III subunit RPC1 OS=Giardia intestinalis
GN=RPOA3 PE=3 SV=1
Length = 1741
Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/126 (46%), Positives = 85/126 (67%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L KE ++ EGY K + IR ESG+L+ PG + +ETLEA + + LS +R+ + L
Sbjct: 964 VLGKKEVIVQEGYEKAQEKIRDYESGKLEAIPGSTVQETLEATLNQILSNVRESCAQIAL 1023
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ELH +N PL+M+L GSKGS INI+QMI +GQQ+ G R P+ F RS P+F +SK+P
Sbjct: 1024 KELHFTNKPLIMSLCGSKGSPINIAQMIIILGQQSFGGSRAPDDFYTRSTPYFYHYSKEP 1083
Query: 234 ASKGNV 239
+KG +
Sbjct: 1084 NAKGFI 1089
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 76/125 (60%), Gaps = 15/125 (12%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQP-KSKS-------RGLIQRLKGKQGRFRGNLSGKRV 57
W+ L + +L IP +QP K+K+ G+I RLKGK GRFR NLSGKRV
Sbjct: 367 WDQLNMDVSLLY---IGKIPGGVQPVKNKTDSGTKEGTGIIDRLKGKAGRFRSNLSGKRV 423
Query: 58 DFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRA 117
+F+ RTVISP+P L + QV IP +A+ LT+PE V N L++L+LNG +PG A
Sbjct: 424 NFSGRTVISPNPYLSMQQVAIPRLIAQNLTFPEIVTSRNIRFLRELILNGK-TYPG---A 479
Query: 118 KERLL 122
E LL
Sbjct: 480 NEVLL 484
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 311 PAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
P I+ P+ L++GKQ+ S+++K N VN NL+ + Y
Sbjct: 840 PCIVYPRQLYSGKQVLSVLMKGNDFDSVNINLEHGDKTY 878
>sp|P35084|RPB1_DICDI DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium
discoideum GN=polr2a PE=2 SV=2
Length = 1727
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 293 IIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 352
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP +HPG
Sbjct: 353 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG 406
Score = 98.6 bits (244), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S ++ + I ++ + + QPG S ET E + + L+ RD AG + L N
Sbjct: 692 ISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNN 751
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM+ACVGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 752 LKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVEN 811
Query: 241 -FLR 243
+LR
Sbjct: 812 SYLR 815
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/23 (78%), Positives = 22/23 (95%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+PPPAI+KPK LWTGKQ+FSLI+
Sbjct: 565 VPPPAILKPKQLWTGKQLFSLII 587
>sp|O27125|RPOA1_METTH DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoA1 PE=3 SV=1
Length = 870
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +A+ +T P V N + +++ + NGPD HPG
Sbjct: 317 SARTVISPDPNISINEVGVPEIIAREVTVPVYVTEWNIDRMREYIENGPDVHPG 370
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 51/127 (40%), Positives = 77/127 (60%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
A+ER+ L ++ + I A E+G L+ PG S EETLE I++ L RD +G+
Sbjct: 645 ARERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEARDKSGEIAE 704
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
N ++MAL+G++GS +N++Q+ ACVGQQ++ G R+ G+DNR+LPHF K
Sbjct: 705 SYFDMDENHAVIMALTGARGSMLNLTQITACVGQQSVRGGRISRGYDNRTLPHFKKGELG 764
Query: 233 PASKGNV 239
S+G V
Sbjct: 765 AKSRGFV 771
>sp|P09846|RPOA1_METTW DNA-directed RNA polymerase subunit A' OS=Methanothermobacter
thermoautotrophicus (strain Winter) GN=rpoA1 PE=3 SV=2
Length = 865
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/114 (47%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++++ WE LQ H + ++E SG+P + + L QRLKGK+GRFR NLSGKRV+F
Sbjct: 257 IVEDLWELLQYHVTTYFDNEASGVPPARHRSGRPLKTLAQRLKGKEGRFRSNLSGKRVNF 316
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTV+SPDPN+ + +VG+PE +AK +T P V N + +K+ + NGPD HPG
Sbjct: 317 SARTVVSPDPNVSVNEVGVPELIAKEVTVPVYVTEWNIDRMKEHIENGPDVHPG 370
Score = 95.5 bits (236), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 78/127 (61%), Gaps = 4/127 (3%)
Query: 117 AKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
AKER+ L ++ + I A E+G L+ PG S EETLE I++ L +D +G+
Sbjct: 644 AKERIEAHLRNAEARVDQLIEAYENGELEPLPGRSLEETLEMKIMQVLGEAKDKSGEIAE 703
Query: 174 QELH-PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
N ++MAL+G++G+ +N++Q+ ACVGQQ+++G R+ G+DNR+LPHF K
Sbjct: 704 SYFDMDENHAVIMALTGARGAMLNLTQITACVGQQSVHGGRITRGYDNRTLPHFKKGELG 763
Query: 233 PASKGNV 239
S+G V
Sbjct: 764 AKSRGFV 770
>sp|P36594|RPB1_SCHPO DNA-directed RNA polymerase II subunit rpb1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb1 PE=1 SV=1
Length = 1752
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 79/114 (69%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + ++G+P +AK LTYPE V N L++LV NGPD+HPG
Sbjct: 354 SARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG 407
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 54/131 (41%), Positives = 78/131 (59%), Gaps = 2/131 (1%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
++ R + E + I+ + RL+ +PG + E+ EA + + L+ RD+AG++
Sbjct: 682 MKEVTRTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEH 741
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L SN M +GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P
Sbjct: 742 SLKDSNNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPE 801
Query: 235 SKGNVK--FLR 243
S+G ++ +LR
Sbjct: 802 SRGFIENSYLR 812
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/24 (75%), Positives = 21/24 (87%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLIL 330
I+PPP I+KPK LWTGKQI SLI+
Sbjct: 565 ILPPPVILKPKVLWTGKQILSLII 588
>sp|P04052|RPB1_DROME DNA-directed RNA polymerase II subunit RPB1 OS=Drosophila
melanogaster GN=RpII215 PE=3 SV=4
Length = 1887
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 80/114 (70%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 96/195 (49%), Gaps = 36/195 (18%)
Query: 46 GRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVL 105
GRF GN+ +TVI+ + + +GI + +A TY E + A K
Sbjct: 658 GRFYGNI---------QTVINNWLLFEGHSIGIGDTIADPQTYNE-IQQAIK-------- 699
Query: 106 NGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
+AK+ +++ I+ + L+ PG + +T E + + L+ R
Sbjct: 700 ----------KAKDDVIN--------VIQKAHNMELEPTPGNTLRQTFENKVNRILNDAR 741
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D G + + L N M +SGSKGS INISQ+IACVGQQ + GKR+P GF R+LPH
Sbjct: 742 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGKRIPYGFRKRTLPH 801
Query: 226 FDKFSKDPASKGNVK 240
F K P S+G V+
Sbjct: 802 FIKDDYGPESRGFVE 816
Score = 41.6 bits (96), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P P I+KP+ LWTGKQIFSLI+ N
Sbjct: 566 MPQPCILKPRPLWTGKQIFSLIIPGN 591
>sp|P0CX02|RPOA1_HALSA DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rpoA1 PE=3
SV=1
Length = 971
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VA +T V+ N E ++ V NGP+ HPG
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPG 446
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 107 GPDKHPGLLRAKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV 163
G D A+ER+ + Y + + I E+G L++ PG + +ETLE I++ L
Sbjct: 704 GIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLGK 763
Query: 164 IRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSL 223
RD AG + N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L
Sbjct: 764 ARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTL 823
Query: 224 PHF 226
HF
Sbjct: 824 SHF 826
>sp|B0R8D4|RPOA1_HALS3 DNA-directed RNA polymerase subunit A' OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rpoA1 PE=1 SV=1
Length = 971
Score = 112 bits (281), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H F+++E SG P + + L QRLKGK+GRFRG+LSGKRV+F
Sbjct: 333 IIEDLWELLQYHVTTFMDNEISGTPPARHRSGRPLKTLSQRLKGKEGRFRGSLSGKRVNF 392
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDP L + +VG+P+ VA +T V+ N E ++ V NGP+ HPG
Sbjct: 393 SARTVISPDPTLSLNEVGVPDRVATEMTQTMVVNEQNLERARRYVRNGPEGHPG 446
Score = 96.3 bits (238), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 72/123 (58%), Gaps = 3/123 (2%)
Query: 107 GPDKHPGLLRAKERL---LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSV 163
G D A+ER+ + Y + + I E+G L++ PG + +ETLE I++ L
Sbjct: 704 GIDDETVSTEARERIDEAIQSAYDRVQELIETYENGDLESLPGRTVDETLEMKIMQTLGK 763
Query: 164 IRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSL 223
RD AG + N +VMA SG++GS +N++QM CVGQQA+ G+R+ G+++R+L
Sbjct: 764 ARDSAGDVAEENFDEDNPAVVMANSGARGSMLNLTQMAGCVGQQAVRGERINRGYEDRTL 823
Query: 224 PHF 226
HF
Sbjct: 824 SHF 826
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus
GN=Polr2a PE=1 SV=3
Length = 1970
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KP+ LWTGKQIFSLI+ + +C
Sbjct: 574 VPQPAILKPRPLWTGKQIFSLIIPGHINC 602
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens
GN=POLR2A PE=1 SV=2
Length = 1970
Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/114 (49%), Positives = 77/114 (67%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 45.1 bits (105), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 24/29 (82%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPNRDC 336
+P PAI+KP+ LWTGKQIFSLI+ + +C
Sbjct: 574 VPQPAILKPRPLWTGKQIFSLIIPGHINC 602
>sp|A5DCV3|RPB1_PICGU DNA-directed RNA polymerase II subunit RPB1 (Fragments)
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=RPB1
PE=3 SV=2
Length = 1579
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 55/114 (48%), Positives = 76/114 (66%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 292 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 351
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVIS DPNL + QVG+P +A+ LTYPE V N L + V NGP++HPG
Sbjct: 352 SARTVISGDPNLDLDQVGVPISIARTLTYPEIVTPYNIHRLTEYVRNGPNEHPG 405
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/61 (65%), Positives = 46/61 (75%), Gaps = 2/61 (3%)
Query: 185 MALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FL 242
M +SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P SKG V+ +L
Sbjct: 578 MVVSGSKGSFINISQMSACVGQQIVEGKRIPFGFADRSLPHFTKDDYSPESKGFVENSYL 637
Query: 243 R 243
R
Sbjct: 638 R 638
>sp|P28364|RPB1_EUPOC DNA-directed RNA polymerase II subunit RPB1 (Fragment) OS=Euplotes
octocarinatus GN=RPB1 PE=3 SV=1
Length = 478
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/118 (45%), Positives = 80/118 (67%), Gaps = 8/118 (6%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRG-----LIQRLKGKQGRFRGNLSGK 55
+I E+++ LQ +CA I++E +G M + KS G + RLKGK+GR RGNL GK
Sbjct: 281 IINENYQLLQFYCATLIDNEQAG---QMVSRHKSGGKAIKAIRARLKGKEGRLRGNLMGK 337
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RVDF++RTVI+ DP L + Q+G+P +A+ +T PE V N + +++LV+NGP+K PG
Sbjct: 338 RVDFSARTVITCDPTLDLDQLGVPRSIAENITIPEVVTPQNIDEMRKLVINGPNKWPG 395
>sp|Q7T6X5|RPO1_MIMIV DNA-directed RNA polymerase subunit 1 OS=Acanthamoeba polyphaga
mimivirus GN=RPO1 PE=1 SV=2
Length = 1495
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/113 (46%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFT 60
I +D+ LQLH A F ++ +G+ + Q K ++ + +RL+GK+GR RGNL GKRVD +
Sbjct: 297 INDDFMLLQLHVATFFANDMAGLARSQQKNKKVTKSMSERLRGKEGRIRGNLMGKRVDMS 356
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+RTVI+ DPN+ + +VG+P +AK LT+ E V N E+L QLV NG +PG
Sbjct: 357 ARTVITSDPNIALNEVGVPLIIAKNLTFDEIVTEHNIEYLTQLVKNGKRVYPG 409
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 45/94 (47%)
Query: 144 QPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIAC 203
P ++ E + + L ++D ++ ++G + SGS G +N Q+ C
Sbjct: 702 DPYVMTKDAFEIKLQENLKSVQDEIKNTVMRNFDKNSGIFIAISSGSSGEPMNAGQIAGC 761
Query: 204 VGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
+GQ + GKR+ F+ R+LP F KF S+G
Sbjct: 762 IGQVIVEGKRIQIRFNGRTLPMFPKFDDSAFSRG 795
>sp|Q03585|RPOA1_THEAC DNA-directed RNA polymerase subunit A' OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rpoA1 PE=3 SV=1
Length = 885
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/108 (45%), Positives = 74/108 (68%), Gaps = 1/108 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ W+ LQ H + +++T GIP ++ + L+QRLKGK+GRFR NLSGKRV F
Sbjct: 263 IIEDLWDLLQFHVTTYFDNQTPGIPPARHRSGRALKTLVQRLKGKEGRFRSNLSGKRVSF 322
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNG 107
+SRTVISP+P L + +VG+PE A+ LT P V+ N + +++L+ G
Sbjct: 323 SSRTVISPEPYLSVNEVGVPERAARELTVPVIVNQFNIDEMRELIKRG 370
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 68/122 (55%)
Query: 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHP 178
E L+++ + I G LQ PG S E+TLE IL E V+RD +GK L
Sbjct: 669 EELVAQAEDRINKLIETFRRGELQPAPGRSVEDTLEMEILSEAGVVRDESGKIASSYLGL 728
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGN 238
++MA SG++ + +NIS++ VGQQ++ G R+ G+ NR+LPHF + ++G
Sbjct: 729 KVPSVIMARSGARATMLNISEVAGIVGQQSVRGGRLNRGYYNRTLPHFKRGDIGADARGF 788
Query: 239 VK 240
V+
Sbjct: 789 VR 790
>sp|P18616|RPB1_ARATH DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana
GN=RPB205 PE=1 SV=3
Length = 1839
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/126 (44%), Positives = 76/126 (60%), Gaps = 1/126 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E + LQ H A + ++E G P Q + + + RLK K+GR RGNL GKRVDF
Sbjct: 299 IISEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++RTVI+PDP + I ++G+P +A LTYPE V N E LK+LV GP PG AK
Sbjct: 359 SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKY 418
Query: 120 RLLSEG 125
+ +G
Sbjct: 419 IIRDDG 424
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 53/124 (42%), Positives = 73/124 (58%), Gaps = 2/124 (1%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+S + + IR + L +PG + +T E + + L+ RD AG + + L +N
Sbjct: 702 ISNAKTAVKDLIRQFQGKELDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNN 761
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK- 240
M +GSKGSFINISQM ACVGQQ + GKR+P GFD R+LPHF K P S+G V+
Sbjct: 762 LKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVEN 821
Query: 241 -FLR 243
+LR
Sbjct: 822 SYLR 825
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQ+F+LI+
Sbjct: 574 VPAPAILKPRPLWTGKQVFNLII 596
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
elegans GN=ama-1 PE=1 SV=3
Length = 1856
Score = 101 bits (252), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ +D LQ H A +++ G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 296 VLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I VG+P +A+ LT+PE V N + L++LV G ++PG
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG 409
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SGSKG
Sbjct: 711 IEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKG 770
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IACVGQQ + GKR+P GF +R+LPHF K P SKG V+
Sbjct: 771 SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVE 818
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P PAI+KPK LWTGKQ+FSLI+ N
Sbjct: 568 VPQPAILKPKPLWTGKQVFSLIIPGN 593
>sp|P35074|RPB1_CAEBR DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis
briggsae GN=rpb-1 PE=3 SV=2
Length = 1853
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 51/114 (44%), Positives = 74/114 (64%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ +D LQ H A +++ G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 296 VLTDDVRLLQYHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I VG+P +A+ LT+PE V N + L++LV G ++PG
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG 409
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 48/108 (44%), Positives = 64/108 (59%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SGSKG
Sbjct: 711 IEKAHNDDLEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKG 770
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IACVGQQ + GKR+P GF +R+LPHF K P SKG V+
Sbjct: 771 SKINISQVIACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVE 818
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/26 (69%), Positives = 22/26 (84%)
Query: 308 IPPPAIMKPKALWTGKQIFSLILKPN 333
+P PAI+KPK LWTGKQ+FSLI+ N
Sbjct: 568 VPQPAILKPKPLWTGKQVFSLIIPGN 593
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium
falciparum (isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 98.2 bits (243), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 73/114 (64%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPL-NMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
++Q+ LQ H +++ G+P+ + K + + RLKGK+GR RGNL GKRVDF
Sbjct: 321 VLQDLCSLLQFHITTLFDNDIPGMPIATTRSKKPIKAIRTRLKGKEGRLRGNLMGKRVDF 380
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I +G+P+ VA LT+ E V N ++LK+LV GP + PG
Sbjct: 381 SARTVITGDPNLNIDYIGVPKSVAMTLTFCETVTPLNYDNLKKLVERGPYEWPG 434
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/120 (45%), Positives = 72/120 (60%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
+L + S+ + + G L+ QPG S E+ E + EL+ R+ AGK + L
Sbjct: 841 EILDKSKSEVSKLVEKAQKGELECQPGKSLYESFETRVNNELNCAREMAGKVASESLDER 900
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M SGSKGS INISQ+I+CVGQQ + GKR+P GF++RSLPHF KF P S+G V
Sbjct: 901 NNIFSMVASGSKGSIINISQIISCVGQQNVEGKRIPFGFNHRSLPHFIKFDYGPESRGFV 960
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 24/25 (96%)
Query: 307 IIPPPAIMKPKALWTGKQIFSLILK 331
+IP PAI+KP+ALWTGKQIFS++L+
Sbjct: 592 VIPTPAIIKPRALWTGKQIFSMLLQ 616
>sp|P17546|RPB1A_TRYBB DNA-directed RNA polymerase II subunit RPB1-A OS=Trypanosoma brucei
brucei GN=TRP4.8 PE=1 SV=1
Length = 1766
Score = 95.1 bits (235), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 9 LQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A + N+ ++ P + K + L +RLKGK GR RGNL GKRVDF++RTVI+
Sbjct: 304 LQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 363
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQL 103
DPN+ + +VG+P VA LT+PERV+ NK+ L +
Sbjct: 364 DPNIDVDEVGVPFSVAMTLTFPERVNTVNKKRLTEF 399
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
LR +L + E A + L + G + ++ EA + L+ R+ A K L
Sbjct: 679 LRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALS 738
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF--DKF--- 229
+ +N VM +GSKG+ +NI Q+ VGQQ + G R+P GF R+LPHF D +
Sbjct: 739 NVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGET 798
Query: 230 SKDPASKGNVKFLR 243
S+ A++G V+ L+
Sbjct: 799 SRGMANRGYVEGLK 812
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQ+FSLIL
Sbjct: 564 LPIPAILKPRPLWTGKQVFSLIL 586
>sp|P17545|RPB1B_TRYBB DNA-directed RNA polymerase II subunit RPB1-B OS=Trypanosoma brucei
brucei GN=TRP5.9 PE=1 SV=1
Length = 1766
Score = 94.4 bits (233), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 64/96 (66%), Gaps = 1/96 (1%)
Query: 9 LQLHCALFINSETSGI-PLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ H A + N+ ++ P + K + L +RLKGK GR RGNL GKRVDF++RTVI+
Sbjct: 304 LQEHVATYFNNASTYYKPTKVNDTKKLKSLTERLKGKYGRLRGNLMGKRVDFSARTVITG 363
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQL 103
DPN+ + +VG+P VA LT+PERV+ NK+ L +
Sbjct: 364 DPNIDVDEVGVPFSVAMTLTFPERVNTINKKRLTEF 399
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
LR +L + E A + L + G + ++ EA + L+ R+ A K L
Sbjct: 679 LRQMNDVLVKTRRNVEKIGAAANNRTLNRKAGMTLLQSFEADVNSALNKCREEAAKKALS 738
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF--DKF--- 229
+ +N VM +GSKG+ +NI Q+ VGQQ + G R+P GF R+LPHF D +
Sbjct: 739 NVRRTNSFKVMIEAGSKGTDLNICQIAVFVGQQNVAGSRIPFGFRRRTLPHFMLDDYGET 798
Query: 230 SKDPASKGNVKFLR 243
S+ A++G V+ L+
Sbjct: 799 SRGMANRGYVEGLK 812
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 21/23 (91%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
+P PAI+KP+ LWTGKQ+FSLIL
Sbjct: 564 LPIPAILKPRPLWTGKQVFSLIL 586
>sp|P15349|RPOA1_HALMO DNA-directed RNA polymerase subunit A' (Fragment) OS=Halococcus
morrhuae GN=rpoA1 PE=3 SV=1
Length = 349
Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/105 (38%), Positives = 64/105 (60%)
Query: 122 LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNG 181
+ Y + + I E+ L++ PG + +ETLE I++ L RD AG + N
Sbjct: 88 MDNAYERVQELIDTYENDDLESLPGRTVDETLEMKIMQTLGKARDSAGDIADEHFDDDNP 147
Query: 182 PLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
++MA SG++GS +N++QM ACVGQQA+ G+R+ G++ R+L HF
Sbjct: 148 AVIMAESGARGSMLNLTQMAACVGQQAVRGERINRGYEGRTLSHF 192
>sp|P91875|RPA1_DROME DNA-directed RNA polymerase I subunit RPA1 OS=Drosophila
melanogaster GN=RpI1 PE=1 SV=2
Length = 1642
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 8/109 (7%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTV 64
W LQ+ + ++ +NM + KS GL Q ++ K G R ++ GKRV++ +RTV
Sbjct: 374 WLALQMSVDVLLD-------VNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTV 426
Query: 65 ISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
I+PDPN+ + ++GIP+ AK L+YP V N L+++V+NGPD HPG
Sbjct: 427 ITPDPNINVDEIGIPDIFAKKLSYPVPVTEWNVTELRKMVMNGPDVHPG 475
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%)
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
PSN +M LSG+KGS +N Q+ +GQ + GKR P +SLP F F P S G
Sbjct: 868 PSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGG 927
Query: 238 NV 239
+
Sbjct: 928 FI 929
Score = 33.5 bits (75), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 14/18 (77%)
Query: 310 PPAIMKPKALWTGKQIFS 327
PP I+KP LW+GKQI S
Sbjct: 649 PPTILKPAVLWSGKQILS 666
>sp|P10964|RPA1_YEAST DNA-directed RNA polymerase I subunit RPA190 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA190 PE=1
SV=2
Length = 1664
Score = 84.3 bits (207), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 36 GLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHA 95
G+ Q L+ K+G FR ++ GKRV++ +R+VISPDPN++ ++G+P A LTYPE V
Sbjct: 455 GVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAY 514
Query: 96 NKEHLKQLVLNGPDKHPG 113
N L+Q V+NGPDK PG
Sbjct: 515 NIAELRQAVINGPDKWPG 532
Score = 62.0 bits (149), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 153 LEAVILKELSVIRDHAGKACL----QELHPSNGPLVMALSGSKGSFINISQMIACVGQQA 208
L+AV +++ I C+ + P N MALSG+KGS +N+SQ++ +GQQA
Sbjct: 892 LDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQA 951
Query: 209 INGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ G+RVP ++LP F + D + G VK
Sbjct: 952 LEGRRVPVMVSGKTLPSFKPYETDAMAGGYVK 983
Score = 35.8 bits (81), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 304 TSVIIPPPAIMKPKALWTGKQIFSLIL 330
+ ++ PP I KP LWTGKQI + +L
Sbjct: 710 SKIVTLPPTIFKPYPLWTGKQIITTVL 736
>sp|Q86H36|RPA1_DICDI DNA-directed RNA polymerase I subunit rpa1 OS=Dictyostelium
discoideum GN=polr1a PE=3 SV=1
Length = 1615
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 69/106 (65%), Gaps = 6/106 (5%)
Query: 9 LQLHCA-LFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ+H ++ NS++ N + G+ Q L+ K+G FR ++ GKRV++ +RTVISP
Sbjct: 398 LQMHVNNMYDNSKS-----NSNTNEVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISP 452
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
D +L+ ++G+P++ AK LT+P+ V N L Q V+NGP+++PG
Sbjct: 453 DISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPG 498
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 37/66 (56%)
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q+ P N +M +SG+KGS +N SQ+ +GQQ + GKRVP ++LP F +
Sbjct: 880 QKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASA 939
Query: 234 ASKGNV 239
+ G V
Sbjct: 940 RAGGFV 945
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 306 VIIPPPAIMKPKALWTGKQIFSLIL 330
++ PPP I+KP LW+GKQ+ S L
Sbjct: 675 IVTPPPCILKPVPLWSGKQLISAAL 699
>sp|O95602|RPA1_HUMAN DNA-directed RNA polymerase I subunit RPA1 OS=Homo sapiens
GN=POLR1A PE=1 SV=2
Length = 1720
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 64/108 (59%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + ++ P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMDKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 445
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 446 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 493
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 159 KELSVIRDHAGKAC----LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC L P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 867 EEVNHYSNEINKACMPFGLHRQFPENSLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 926
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 927 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 956
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 311 PAIMKPKALWTGKQIFSLIL---KPNRDCPVNANLKTK--GRAYT 350
P+I+KP LWTGKQ+ S +L P P+N + K K G+A+
Sbjct: 673 PSILKPFPLWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAWV 717
>sp|O35134|RPA1_MOUSE DNA-directed RNA polymerase I subunit RPA1 OS=Mus musculus
GN=Polr1a PE=1 SV=2
Length = 1717
Score = 83.6 bits (205), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 398 WIRLQSHVNIVFDSEMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 500
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 159 KELSVIRDHAGKAC----LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC L P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 874 EEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 933
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV 239
P +SLP F+ + P + G V
Sbjct: 934 PLMASGKSLPCFEPYEFTPRAGGFV 958
Score = 37.4 bits (85), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 310 PPAIMKPKALWTGKQIFSLIL---KPNRDCPVNANLKTK 345
PPAI+KP LWTGKQ+ S +L P P+N + K K
Sbjct: 679 PPAILKPFPLWTGKQVVSTLLINIIPEDYAPLNLSGKAK 717
>sp|P28363|RPA1_EUPOC DNA-directed RNA polymerase I subunit RPA1 (Fragment) OS=Euplotes
octocarinatus GN=RPA1 PE=3 SV=1
Length = 638
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 65/108 (60%), Gaps = 6/108 (5%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ +++S + ++ K K GL Q L+ K+G FR + GKRV+F R+VI
Sbjct: 445 WAELQESVNCYLDS---SLAAKLENKEKP-GLRQLLERKEGIFRMKMMGKRVNFAGRSVI 500
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
SPDP + Q+G+PE +A+ +T+PE N E LK+ V+NG KHPG
Sbjct: 501 SPDPYISTDQIGVPEFIARTITFPEPA--KNIEKLKRCVINGAHKHPG 546
>sp|O54889|RPA1_RAT DNA-directed RNA polymerase I subunit RPA1 OS=Rattus norvegicus
GN=Polr1a PE=1 SV=1
Length = 1716
Score = 82.0 bits (201), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 63/108 (58%), Gaps = 5/108 (4%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +S+ + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 398 WIRLQSHVNIVFDSDMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 500
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 159 KELSVIRDHAGKAC----LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC L P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 874 EEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 933
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 934 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 963
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 310 PPAIMKPKALWTGKQIFSLIL---KPNRDCPVNANLKTK 345
PPAI+KP LWTGKQ+ S +L P P+N K K
Sbjct: 679 PPAILKPFPLWTGKQVVSTLLINIIPEDYTPLNLTGKAK 717
>sp|P15398|RPA1_SCHPO DNA-directed RNA polymerase I subunit rpa1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa1 PE=1 SV=2
Length = 1689
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 29 QPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTY 88
Q ++ G+ Q L+ K+G FR ++ GKRV++ +R+VISPDPN++ ++G+P A LTY
Sbjct: 456 QSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTY 515
Query: 89 PERVHHANKEHLKQLVLNGPDKHPG 113
PE V N ++ V+NGP K PG
Sbjct: 516 PEPVTLYNFNEMRNAVINGPHKWPG 540
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
P N M +SG+KGS +N+SQ+ +GQQ + G+RVP +SLP F + S G
Sbjct: 934 PYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGG 993
Query: 238 NV--KFL 242
+ +FL
Sbjct: 994 FIASRFL 1000
Score = 35.4 bits (80), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 26/42 (61%), Gaps = 5/42 (11%)
Query: 310 PPAIMKPKALWTGKQIFS---LILKPNRDCPVNANLKTKGRA 348
PPAI +P WTGKQI S L LKP+ D P NLK+K +
Sbjct: 731 PPAIQRPGIYWTGKQIISSVLLNLKPS-DRP-GLNLKSKAKV 770
>sp|O55766|RPB1_IIV6 Probable DNA-directed RNA polymerase II subunit RPB1 homolog
OS=Invertebrate iridescent virus 6 GN=IIV6-176R PE=3
SV=1
Length = 1026
Score = 73.6 bits (179), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 53/73 (72%)
Query: 35 RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHH 94
+GL +RL GK+G+ R NL GKR + ++RTVI PDP L+I +V +P+ +A+ LT+P+ V+
Sbjct: 363 KGLRERLTGKEGQIRNNLLGKRCEMSARTVIGPDPTLKIDEVIVPKEIAQSLTFPDFVNK 422
Query: 95 ANKEHLKQLVLNG 107
N + L +LV +G
Sbjct: 423 HNIDRLTKLVNSG 435
Score = 45.4 bits (106), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDN--RSLPHF 226
LH N L SGSKG +NI+Q+ + +GQQ G+RV N R+LPH+
Sbjct: 843 LHAQNNFLTTVESGSKGDHLNIAQITSLLGQQITEGQRVKPLLSNGKRTLPHY 895
>sp|Q8DS47|RPOC_STRMU DNA-directed RNA polymerase subunit beta' OS=Streptococcus mutans
serotype c (strain ATCC 700610 / UA159) GN=rpoC PE=3
SV=2
Length = 1209
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++Q + LQ I++ G P+ + L Q LKGKQGRFR NL GKRVDF+
Sbjct: 281 IVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSQMLKGKQGRFRQNLLGKRVDFS 340
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP-------ERVHHANKEHLKQLVLNGPDK--- 110
R+VI+ P L++YQ G+P +A L P +R N + K+L+ G D+
Sbjct: 341 GRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVDRDIVQNVKAAKRLIERGDDRIWD 400
Query: 111 --------HPGLL-----------RAKERLLSEGYS------KCEGYIRAMESGRLQTQP 145
HP LL +A E +L +G + CE Y + ++
Sbjct: 401 ILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLACEAYNADFDGDQMAIHV 460
Query: 146 GCSAEETLEAVIL 158
S E EA +L
Sbjct: 461 PLSEEAQAEARLL 473
>sp|A4VSK3|RPOC_STRSY DNA-directed RNA polymerase subunit beta' OS=Streptococcus suis
(strain 05ZYH33) GN=rpoC PE=3 SV=2
Length = 1215
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 40/232 (17%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++Q + LQ I++ G P+ + L LKGKQGRFR NL GKRVDF+
Sbjct: 281 IVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFS 340
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP-------ERVHHANKEHLKQLVLNGPDK--- 110
R+VI+ P L++YQ G+P +A L P R N + K+L+ G D+
Sbjct: 341 GRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWD 400
Query: 111 --------HPGLL-----------RAKERLLSEGYS------KCEGYIRAMESGRLQTQP 145
HP LL +A E +L +G + CE Y + ++
Sbjct: 401 ILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHV 460
Query: 146 GCSAEETLEAVILKELS--VIRDHAGKACL---QELHPSNGPLVMALSGSKG 192
S E EA IL + ++ GK + Q++ N L M +G +G
Sbjct: 461 PLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDAGREG 512
>sp|A4VYU4|RPOC_STRS2 DNA-directed RNA polymerase subunit beta' OS=Streptococcus suis
(strain 98HAH33) GN=rpoC PE=3 SV=2
Length = 1215
Score = 69.7 bits (169), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 100/232 (43%), Gaps = 40/232 (17%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++Q + LQ I++ G P+ + L LKGKQGRFR NL GKRVDF+
Sbjct: 281 IVQNEKRMLQEAVDALIDNGRRGRPITGPGSRPLKSLSHMLKGKQGRFRQNLLGKRVDFS 340
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP-------ERVHHANKEHLKQLVLNGPDK--- 110
R+VI+ P L++YQ G+P +A L P R N + K+L+ G D+
Sbjct: 341 GRSVIAVGPTLKMYQCGVPREMAIELFKPFVMREIVARDIAGNVKAAKRLIERGDDRIWD 400
Query: 111 --------HPGLL-----------RAKERLLSEGYS------KCEGYIRAMESGRLQTQP 145
HP LL +A E +L +G + CE Y + ++
Sbjct: 401 ILEEVIKEHPVLLNRAPTLHRLGIQAFEPVLIDGKALRLHPLVCEAYNADFDGDQMAIHV 460
Query: 146 GCSAEETLEAVILKELS--VIRDHAGKACL---QELHPSNGPLVMALSGSKG 192
S E EA IL + ++ GK + Q++ N L M +G +G
Sbjct: 461 PLSEEAQAEARILMLAAEHILNPKDGKPVVTPSQDMVLGNYYLTMEDAGREG 512
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,917,805
Number of Sequences: 539616
Number of extensions: 6497271
Number of successful extensions: 14951
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 13506
Number of HSP's gapped (non-prelim): 1425
length of query: 409
length of database: 191,569,459
effective HSP length: 120
effective length of query: 289
effective length of database: 126,815,539
effective search space: 36649690771
effective search space used: 36649690771
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)