Query psy13848
Match_columns 409
No_of_seqs 397 out of 1403
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 21:59:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13848.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13848hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_A DNA-directed RNA polyme 100.0 1.7E-77 5.7E-82 691.0 21.0 292 2-306 295-864 (1752)
2 4ayb_A DNA-directed RNA polyme 100.0 2.5E-77 8.4E-82 660.0 17.9 291 2-305 262-839 (880)
3 1twf_A B220, DNA-directed RNA 100.0 4.2E-76 1.4E-80 679.7 17.4 292 2-306 289-858 (1733)
4 2a6h_D DNA-directed RNA polyme 100.0 2.3E-56 7.9E-61 503.7 10.1 257 2-299 567-1104(1524)
5 1hqm_D DNA-directed RNA polyme 100.0 1.4E-56 4.9E-61 504.1 3.3 117 149-299 725-845 (1265)
6 3lu0_D DNA-directed RNA polyme 100.0 5.8E-56 2E-60 494.8 6.7 258 2-299 292-806 (1407)
7 3qqc_A DNA-directed RNA polyme 99.8 8.1E-20 2.8E-24 188.0 3.4 75 2-90 329-405 (436)
8 3h0g_A DNA-directed RNA polyme 99.3 4.4E-13 1.5E-17 156.2 3.9 68 302-382 560-628 (1752)
9 1twf_A B220, DNA-directed RNA 99.3 3.7E-13 1.3E-17 156.8 1.8 68 303-383 555-623 (1733)
10 4ayb_A DNA-directed RNA polyme 99.2 2.1E-12 7.3E-17 143.1 4.5 72 301-382 527-603 (880)
11 1hqm_D DNA-directed RNA polyme 95.3 0.0054 1.8E-07 70.3 2.2 147 2-156 307-500 (1265)
12 3lu0_D DNA-directed RNA polyme 93.3 0.028 9.5E-07 64.5 2.1 30 127-156 452-481 (1407)
13 2a6h_D DNA-directed RNA polyme 90.2 0.055 1.9E-06 62.9 0.0 32 127-158 731-762 (1524)
No 1
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-77 Score=691.05 Aligned_cols=292 Identities=39% Similarity=0.642 Sum_probs=279.2
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCC-CCCchhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQP-KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPE 80 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~-~~~~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~ 80 (409)
+.+.|++||.||++||||+.+|.|.+.++ ++|+|+|+||||||+||||+|||||||||||||||+|||||++||||||.
T Consensus 295 ~~~~~~~LQ~~v~~~~dn~~~~~~~~~~~~~rp~k~~~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~l~~~evGvP~ 374 (1752)
T 3h0g_A 295 VSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDFSARTVITGDPNLSLDELGVPR 374 (1752)
T ss_dssp HHHHHHHHHHHHHHTTCTTCSSCCCCCSSSSCCCCCHHHHHTCSSSSSTTTTSSCCCSSEEEEEEEEETTSCTTBCBCCH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCccccccCCCCCcchHhhhhcccccccccccccccCCccceeecCCCCcccceeeChH
Confidence 56889999999999999999999876544 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeccccHHHHHHHHHcCCCCCCCc----------------------------------------------
Q psy13848 81 HVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL---------------------------------------------- 114 (409)
Q Consensus 81 ~~a~~lt~pe~v~~~N~~~l~~lv~ng~~~~pGa---------------------------------------------- 114 (409)
.||++|||||+|++||+++|++||.||++.||||
T Consensus 375 ~~A~~Lt~Pe~vt~~ni~~l~~lv~nG~~~~pga~~v~~~~~~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~Vl~NRqP 454 (1752)
T 3h0g_A 375 SIAKTLTYPETVTPYNIYQLQELVRNGPDEHPGAKYIIRDTGERIDLRYHKRAGDIPLRYGWRVERHIRDGDVVIFNRQP 454 (1752)
T ss_dssp HHHTSCCCCCBCCTTTHHHHHHHHHHCTTSSSCEEEEECTTCCBCCTTTTCSCCCCCCCSSCEEEECCCSCCEEEEECSS
T ss_pred HHHHhcCCCccccHHHHHHHHHHHHcCCccccCceeeecCCCcEeechhhchhhhhhcCcCcEEEeeeccCCeEEEecCc
Confidence 9999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 455 tLHr~sima~~~~v~~gktirlh~~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~v 534 (1752)
T 3h0g_A 455 SLHKMSMMGHRIRVMPYSTFRLNLSVTSPYNADFDGDEMNMHVPQSEETRAEIQEITMVPKQIVSPQSNKPVMGIVQDTL 534 (1752)
T ss_dssp CCSGGGEEEEECCCCSSSSEEEEGGGSGGGTCCSSSCEEEEECCCSTTHHHHHHHTCCTTTTSEETTTTEESCCCCTHHH
T ss_pred ccchhhcccccceeecCceeeechhhCCCccCccccceeeeeccCCHHHHHHHHHHhcCccceecCCCCCceeeecchhh
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 535 lg~y~lT~~~~f~~~~e~~~l~~~~~~~~~~~~~pai~kp~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v~i~ 614 (1752)
T 3h0g_A 535 AGVRKFSLRDNFLTRNAVMNIMLWVPDWDGILPPPVILKPKVLWTGKQILSLIIPKGINLIRDDDKQSLSNPTDSGMLIE 614 (1752)
T ss_dssp HHHHHHHSTTCEEETHHHHGGGGCSSSCCSSCCCCSBCSSSCEEETTHHHHTTSCSSBCEECCCSSCCSSCTTTCSEEEC
T ss_pred hheeeeccccccCCHHHHHHHHHhhcccCCccCccceecCcCCCchhhHHhhhCcCCCCceeccccccCcCCCcCeEEEE
Confidence
Q ss_pred -------------------------------------------------------------------hhhHHHHHHhhhh
Q psy13848 115 -------------------------------------------------------------------LRAKERLLSEGYS 127 (409)
Q Consensus 115 -------------------------------------------------------------------~~~K~~iI~eg~~ 127 (409)
.+++.++|+++++
T Consensus 615 ~gell~g~l~K~~lg~~~~~li~~i~~~~G~~~~~~~ld~~~~l~~~~l~~~GfSigi~D~~~~~~~~~~~~~~i~~a~~ 694 (1752)
T 3h0g_A 615 NGEIIYGVVDKKTVGASQGGLVHTIWKEKGPEICKGFFNGIQRVVNYWLLHNGFSIGIGDTIADADTMKEVTRTVKEARR 694 (1752)
T ss_dssp BSCEEEECCSHHHHSSCTTCHHHHSSSSSCTTTHHHHHHHHHHHHHHHHHHHCCCCCGGGGSCCSHHHHHHHHHHHTTTH
T ss_pred cCeEEecccchHHhccCcccHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHhcCceechhhcccCHHHHHHHHHHHHHHHH
Confidence 2346789999999
Q ss_pred hHHHHHHHhhcCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcCCCcchhhHHHHHHHhcCc
Q psy13848 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207 (409)
Q Consensus 128 kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~~~ln~~~~~~g~~~~~~l~p~N~~~~M~~sGsKGS~~Ni~Qi~~~vGQQ 207 (409)
+|.+++++|+.|.|+..||++.+|++|++++++|+++++++++.|++.+++.|++++|+.||||||++|++||+||||||
T Consensus 695 ~v~~~~~~~~~g~l~~~~g~~~~e~~e~~v~~~l~~~~~~~~~~~~~~l~~~N~~~~M~~SGakGs~~ni~Q~~~~~Gqq 774 (1752)
T 3h0g_A 695 QVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDSNNVKQMVAAGSKGSFINISQMSACVGQQ 774 (1752)
T ss_dssp HHHHHHTTTTTTCCCCCSSCCTTHHHHHHHHHHHHHHHHHHHHHHHTTSCSSCTTTHHHHHCSSCCHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHhhhccccCHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeeccccccccccccccccccccCcc
Q psy13848 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNG 287 (409)
Q Consensus 208 ~l~G~Rip~g~~gRtLPhF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~kt~~~tsrsG 287 (409)
.++|+|||+||.+|+||||.++|.+|+++|||.|||++||+| .|||||||+|| |||+|||+|| +++|
T Consensus 775 ~~~GkrIp~g~~~rtLP~f~k~d~~~~a~GfV~~sF~~GL~p------~EfFfhtmggR---eGLiDTAvKT----A~SG 841 (1752)
T 3h0g_A 775 IVEGKRIPFGFKYRTLPHFPKDDDSPESRGFIENSYLRGLTP------QEFFFHAMAGR---EGLIDTAVKT----AETG 841 (1752)
T ss_dssp CSTTSSSCCCSTTSSSTTSCSSCCSTTTSSCCSSCTTTCCCH------HHHHHHHHHHT---TTTTHHHHTT----THHH
T ss_pred ccCCccCCCCCCCccCCCCCCCCCCcccCcchhhcccCCCCH------HHHHHHhhhhh---hhhhHhhhhc----CcCc
Confidence 999999999999999999999999999999999999999999 99999999999 9999999999 9999
Q ss_pred hHHHHHHhhhcc----ccccCCC
Q psy13848 288 WLSSVLSSSLRF----REHETSV 306 (409)
Q Consensus 288 yl~r~L~~~l~F----~~~~~~~ 306 (409)
||||||++.|+. +|++.|.
T Consensus 842 YLqRRLVk~leDv~V~YDgTVRn 864 (1752)
T 3h0g_A 842 YIQRRLVKAMEDVMVRYDGTVRN 864 (1752)
T ss_dssp HHHHHHHHHHTTCEEETTTEEEC
T ss_pred hhHHHHHHHHhheEEeeCCeeEc
Confidence 999999999987 4554443
No 2
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=100.00 E-value=2.5e-77 Score=659.99 Aligned_cols=291 Identities=39% Similarity=0.643 Sum_probs=276.6
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCC-CCCchhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQP-KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPE 80 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~-~~~~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~ 80 (409)
+.+.|++||+||++|+||+.+|.|.+.++ ++|+|+|+|+|+||+||||+|||||||||||||||+|||+|++||||||.
T Consensus 262 ~~~~~~~LQ~~V~~l~dn~~~g~~~~~~~~~rp~ksl~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~l~~~e~GvP~ 341 (880)
T 4ayb_A 262 IEDLWDLLQYHVATYFDNEIPGLPPSKHRSGRPLRTLAQRLKGKEGRFRGNLSGKRVDFSSRTVISPDPNISIDEVGVPE 341 (880)
T ss_dssp HHHHHHHHHHHHHHHHCSCCSSSCCCCCTTSCCCCCHHHHHHSSSSTHHHHTSSEECSSEEEEEEEECTTSCSSEEEECH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCccCCCCCCcccchhhhhcccchhhhhcccceeecccCceeeeCCCCccccccCCcH
Confidence 46789999999999999999998877655 49999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeccccHHHHHHHHHcCCCCCCCc----------------------------------------------
Q psy13848 81 HVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL---------------------------------------------- 114 (409)
Q Consensus 81 ~~a~~lt~pe~v~~~N~~~l~~lv~ng~~~~pGa---------------------------------------------- 114 (409)
.||.+||+||+||+||+++|+++|.|||++||||
T Consensus 342 ~~A~~Lt~Pe~vt~~N~~~l~~~v~ng~~~~pga~~~i~~~~~~~~l~~~~~~~~~~~~l~~g~~V~rhl~dgd~VLlNR 421 (880)
T 4ayb_A 342 IIARTLTVPERITPWNIEKLRQFVINGPDKWPGANYVIRPDGRRIDLRYVKDRKELASTLAPGYVVERHLTDGDVVLFNR 421 (880)
T ss_dssp HHHTTSEEEEECCTTTHHHHHHHHHHTTSSSSCEEEEECSSCCEEEGGGCSSCTTHHHHCCTTCEEEEECCTTCEEEEEC
T ss_pred HHHHhCCCCeEEcHHHHHHHHHHHHcCCccccchhhhhhccceEEEeecchhhhHHHHhccccceEeeeeecCcEEEecC
Confidence 9999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 422 qPTLHr~si~a~~~~l~~gktirlhp~vC~~yNADFDGDeMnvHvPqS~eA~aEa~~Lm~~~~nilsP~~G~Pii~~~QD 501 (880)
T 4ayb_A 422 QPSLHRISMMAHRVRVLKGLTFRLNLLVCPPYNADFDGDEMNLHVPQSEEAIAEAKEIMLVHKNIITPRYGGPIIGAAQD 501 (880)
T ss_dssp SSCCSGGGEEEEEEEECSSSSEEECGGGHHHHTCCSSSCEEEEECCCSHHHHHHHHHHSBSGGGCBCSSSSSBCSCCCSH
T ss_pred CCcccccceeeeeeecccCceeeeccccccccccCcccceeEEeccCCHHHHHHHHHHHhChhccccCCCCCcccccccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 502 ~vlg~y~lT~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~~~~tgkqi~s~~lp~~~~~~~~~~~~~~~~~~~~~~~~ 581 (880)
T 4ayb_A 502 YISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILAPREYYTGKQVVSAFLPKDFNFHGQANVSSGPRLCKNEDCP 581 (880)
T ss_dssp HHHHHHHHTSSSCEECHHHHHHHHTTSCCCCCCCSCSEESSSEEEEHHHHHHTTSCTTCCEEEECTTCSGGGCCSSSCCT
T ss_pred HHHHhHHhhcCcccCCHHHHhhhhcccceecccCccceecceeEeccceEEEEEecccccccceeEeecCCccccCccCC
Confidence
Q ss_pred ----------------------------------------------------------------------------hhhH
Q psy13848 115 ----------------------------------------------------------------------------LRAK 118 (409)
Q Consensus 115 ----------------------------------------------------------------------------~~~K 118 (409)
.+++
T Consensus 582 ~~~~v~i~~g~l~~g~ldk~~lg~~~~~~li~~i~~~~G~~~t~~~ld~l~~lg~~~lt~~GfSigi~Di~i~~~~~~~i 661 (880)
T 4ayb_A 582 HDSYVVIKNGILLEGVFDKKAIGNQQPESILHWLIKEYSDEYGKWLMDNLFRVFIRFVELQGFTMRLEDVSLGDDVKKEI 661 (880)
T ss_dssp TSCEEEEETTEEEECCCSTTTSSTTCTTSHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHCCCCCGGGGCCCHHHHHHH
T ss_pred CcceEEEeCceeeeeeecchhhcccccceeeehhhhhcccHHHHHHHHHHHHHHHHHHHhcCCcccccccccchhhHHHH
Confidence 1123
Q ss_pred HHHHHhhhhhHHHHHHHhhcCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcCCCcchhhHH
Q psy13848 119 ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198 (409)
Q Consensus 119 ~~iI~eg~~kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~~~ln~~~~~~g~~~~~~l~p~N~~~~M~~sGsKGS~~Ni~ 198 (409)
..++++++.+|++++++|+.|.++..+|++.++++|..++++|+++++++++.+.+.+++.|++++|+.||||||.+|++
T Consensus 662 ~~~i~~a~~~v~~i~~~~~~g~l~~~~g~~~~e~~e~~v~~~l~~~~~~~~~~~~~~l~~~N~i~mMa~SGARGS~~ni~ 741 (880)
T 4ayb_A 662 YNEIDRAKVEVDNLIQKYKNGELEPIPGRTLEESLENYILDTLDKLRSTAGDIASKYLDPFNFAYVMARTGARGSVLNIT 741 (880)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTSSCCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHhhcCccCCHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcccCCcccCCCCCCCCCCCCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeecccccccccccccc
Q psy13848 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQK 278 (409)
Q Consensus 199 Qi~~~vGQQ~l~G~Rip~g~~gRtLPhF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~k 278 (409)
||+||+|||+++|+|||+||++||||||.++|.+|+++|||.+||++||+| .|||||||+|| |||+|||+|
T Consensus 742 Qlagm~Gqq~~~G~RIprg~~~rtLP~f~~~d~~p~a~GfI~ssF~eGLtp------~EyF~ht~ggR---kGL~DTAlK 812 (880)
T 4ayb_A 742 QMAAMLGQQSVRGERIKRGYMTRTLPHFKPYDISPEARGFIYSSFRTGLKP------TELFFHAAGGR---EGLVDTAVR 812 (880)
T ss_dssp HHHTCCEECBSSSSBSCCSBTTBSSTTSCTTCCSTTTTSEECSCTTTCCCH------HHHHHHHHHHH---HHHHHHHHT
T ss_pred HHHhcccccccCCccCcCCCccCCCCCCCCCCCCcccCCeEhhcccCCCCH------HHHHHhhhhhh---hhHHhcchh
Confidence 999999999999999999999999999999999999999999999999999 99999999999 999999999
Q ss_pred ccccccCcchHHHHHHhhhcc----ccccCC
Q psy13848 279 TDKVRSRNGWLSSVLSSSLRF----REHETS 305 (409)
Q Consensus 279 t~~~tsrsGyl~r~L~~~l~F----~~~~~~ 305 (409)
| |+||||||||++.|+. +|++.|
T Consensus 813 T----A~SGYLtRRLVdv~qDv~V~yDgTVR 839 (880)
T 4ayb_A 813 T----SQSGYMQRRLINALSDLRAEYDGTVR 839 (880)
T ss_dssp H----HHHHHHHHHHHHHHTTEEECTTSCEE
T ss_pred h----chhhHHHHHHHHHHcCEEEecCCCcc
Confidence 9 9999999999999987 455544
No 3
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=100.00 E-value=4.2e-76 Score=679.70 Aligned_cols=292 Identities=39% Similarity=0.618 Sum_probs=278.0
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCC-CCCchhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQP-KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPE 80 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~-~~~~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~ 80 (409)
+.+.|++||.||++||||+.+|.|.+.++ ++|+|+|+||||||+||||+|||||||||||||||+|||+|++||||||.
T Consensus 289 i~e~~~~LQ~~v~~~~dn~~~~~~~~~~~~~rp~k~i~~~lkgK~GrfR~nl~GKRVd~s~RsVI~~dP~L~~~evGvP~ 368 (1733)
T 1twf_A 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFSARTVISGDPNLELDQVGVPK 368 (1733)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSCCCCCSSCTTCCCCCSTTSCTTTTTTSSGGGTTCSCCSEEEEEEEECTTSCTTEEEEEH
T ss_pred HHHHHHHHHHHHHHHhccCccCCCccccCCCccchhHHHHhccccchhhhcccccccCcccceEEeCCCCcccccccCcH
Confidence 56789999999999999999999876554 58999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeccccHHHHHHHHHcCCCCCCCc----------------------------------------------
Q psy13848 81 HVAKILTYPERVHHANKEHLKQLVLNGPDKHPGL---------------------------------------------- 114 (409)
Q Consensus 81 ~~a~~lt~pe~v~~~N~~~l~~lv~ng~~~~pGa---------------------------------------------- 114 (409)
.||.+||+||+||+||+++|++||.||++.||||
T Consensus 369 ~~A~~Lt~Pe~vt~~ni~~l~~lv~~g~~~~~ga~~~~~~~g~~~~l~~~~~~~~~~l~~g~~v~r~l~~gd~VllNRqP 448 (1733)
T 1twf_A 369 SIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRDSGDRIDLRYSKRAGDIQLQYGWKVERHIMDNDPVLFNRQP 448 (1733)
T ss_dssp HHHTTCEEEEECCTTTHHHHHHHHHHTTTSSSCEEEEECTTCCEEETTSCTTTTCCCCCTTCEEEEECCTTCEEEEECSS
T ss_pred HHHHhCCCCccccHHHHHHHHHHHHcCCccCCCceeEEcCCCcEEeccccchhhhhhcccCCEEEeeeccCCEEEEeCCC
Confidence 9999999999999999999999999999999998
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 449 TLHr~si~a~~~~v~~~~tirlnp~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~v 528 (1733)
T 1twf_A 449 SLHKMSMMAHRVKVIPYSTFRLNLSVTSPYNADFDGDEMNLHVPQSEETRAELSQLCAVPLQIVSPQSNKPCMGIVQDTL 528 (1733)
T ss_dssp CCSGGGEEEEEEEEESSSSEEECGGGHHHHTCCSSSCEEEEECCCSHHHHHHHHHHTBGGGGSEETTTTEESCCCCHHHH
T ss_pred ccccccceeEEEEEccCCeEEeChhhcCCCCccchhhhhhhhcCCCHHHHHHHHHHhcCcccEEecCCCCeeEeeecccc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 529 ~g~y~lT~~~~f~~~~e~~~~~~~~~~~~~~~~~pai~kp~~~wtGkqifs~ilp~~~~~~~~~~~~~~~~~~d~~v~i~ 608 (1733)
T 1twf_A 529 CGIRKLTLRDTFIELDQVLNMLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAIPNGIHLQRFDEGTTLLSPKDNGMLII 608 (1733)
T ss_dssp HHHHHHHSTTCEEEHHHHHHHHHHSTTCCSCCCCCSBCSSSCEEEHHHHHHHHSCTTCCEEECCTTCCTTCTTCCSEEEE
T ss_pred ccceeeecCcccCCHHHHHHHHHhhhhhcCccCCccccCcccCccHHHHHHHhCCCCCceeecCCCcccCCcccceEEEe
Confidence
Q ss_pred -------------------------------------------------------------------hhhHHHHHHhhhh
Q psy13848 115 -------------------------------------------------------------------LRAKERLLSEGYS 127 (409)
Q Consensus 115 -------------------------------------------------------------------~~~K~~iI~eg~~ 127 (409)
.++++++|+++++
T Consensus 609 ~gel~~g~ldKk~lg~~~~~li~~i~~~~G~~~a~~~ld~l~~l~~~~l~~~GfSigi~D~~~~~~~~~~i~~~i~~a~~ 688 (1733)
T 1twf_A 609 DGQIIFGVVEKKTVGSSNGGLIHVVTREKGPQVCAKLFGNIQKVVNFWLLHNGFSTGIGDTIADGPTMREITETIAEAKK 688 (1733)
T ss_dssp TTEEEESCCCHHHHSSCTTSHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTCBCCCGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCcEEEeecchHHhccChhHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcceEEehhhcCcCHHHHHHHHHHHHHHHH
Confidence 1233668889999
Q ss_pred hHHHHHHHhhcCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhcCCCCCcchhhhhcCCCcchhhHHHHHHHhcCc
Q psy13848 128 KCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQ 207 (409)
Q Consensus 128 kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~~~ln~~~~~~g~~~~~~l~p~N~~~~M~~sGsKGS~~Ni~Qi~~~vGQQ 207 (409)
+|.+++++|+.|.++.+||++..|++|++++++|+++++++++.+++.+++.|++++|+.||||||++|++||+||||||
T Consensus 689 ~v~~~~~~~~~g~l~~~pg~~~~e~~e~~v~~il~~~~d~~~~~~~~~l~~~N~i~~Ma~SGAKGs~~Ni~Q~~~~~Gqq 768 (1733)
T 1twf_A 689 KVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQ 768 (1733)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHTSSCCHHHHHHHHSCCEEC
T ss_pred HHHHHHHHHHhCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEeeccCcccHHhHHHHHhCcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeeccccccccccccccccccccCcc
Q psy13848 208 AINGKRVPNGFDNRSLPHFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNG 287 (409)
Q Consensus 208 ~l~G~Rip~g~~gRtLPhF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~kt~~~tsrsG 287 (409)
.++|+|||+||++|+||||.++|.+|+|+|||.|||++||+| .|||||||+|| |||+|||+|| +++|
T Consensus 769 ~~~Gkrip~g~~~RtLPhf~k~d~~p~s~GfI~ssF~~GLtp------~EyFfh~mggR---eGLiDTAvKT----A~SG 835 (1733)
T 1twf_A 769 SVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLRGLTP------QEFFFHAMGGR---EGLIDTAVKT----AETG 835 (1733)
T ss_dssp CBTTBSCCCCBTTBSSTTSCTTCCSTTTTTEECSCTTTCCCH------HHHHHHHHHHH---HHHHHHHHHH----HHHH
T ss_pred ccCCccCCCCCCCCCCCCCCCCCCCccccchhhhhhhcccch------HHHhhhhhccc---cchhhhceec----ccCC
Confidence 999999999999999999999999999999999999999999 99999999999 9999999999 9999
Q ss_pred hHHHHHHhhhcc----ccccCCC
Q psy13848 288 WLSSVLSSSLRF----REHETSV 306 (409)
Q Consensus 288 yl~r~L~~~l~F----~~~~~~~ 306 (409)
||||||+++|+. +|++.|.
T Consensus 836 YLqRRLVk~ledv~V~yDgTVR~ 858 (1733)
T 1twf_A 836 YIQRRLVKALEDIMVHYDNTTRN 858 (1733)
T ss_dssp HHHHHHHHHHTTCEECTTSCEEC
T ss_pred cceeehhhhhcceEEEecCcEec
Confidence 999999999987 4555443
No 4
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=100.00 E-value=2.3e-56 Score=503.69 Aligned_cols=257 Identities=26% Similarity=0.335 Sum_probs=210.6
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCCCCC-chhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPE 80 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~~~~-~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~ 80 (409)
+.+.|++||.||++||||+.+|.|.+...++| +|||+|+||||+||||+|||||||||||||||+|||+|++||||||.
T Consensus 567 i~~e~~~LQ~~V~~liDN~~~g~p~~~~~~Rp~lKslsq~LkGKeGRFRqNLlGKRVDySgRSVI~pdP~L~l~evGvP~ 646 (1524)
T 2a6h_D 567 IRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPK 646 (1524)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSSCCBCSSSCCCBCCCHHHHHSTTTCHHHHHHHCEEESSEEEEEEEECTTSCTTEEEEEH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCccCCCCCCcCcchhhhccccccccccccccccccccCcceEecCCCccccccCCcH
Confidence 46789999999999999999999887666799 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceec-------cccHHHHHHHHHc-------------------------CCCCCCCc--------------
Q psy13848 81 HVAKILTYPERVH-------HANKEHLKQLVLN-------------------------GPDKHPGL-------------- 114 (409)
Q Consensus 81 ~~a~~lt~pe~v~-------~~N~~~l~~lv~n-------------------------g~~~~pGa-------------- 114 (409)
.||.+||+|+.+. ..|+..+++++.+ .|+.|..-
T Consensus 647 ~mA~eLt~Pf~~r~Lv~nG~a~nik~AK~li~~~~~~~~~v~dVlr~vidgd~VLlNRqPTLHRlSIqAf~~kl~~gkTi 726 (1524)
T 2a6h_D 647 RMALELFKPFLLKKMEEKGIAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQPVLVEGQSI 726 (1524)
T ss_dssp HHHHHHTHHHHHHHHHHSTTCSSHHHHHHHHSSGGGCCHHHHHHHHHHSTTCCEEEECSSCCSGGGEEEEEEEEESSSCE
T ss_pred HHHHHhccHHHHHHHHHcCCccchhhhhHHHhhhccccccchhhheeeccCceEEEccCCcccccccceeEEEEcCCccc
Confidence 9999999997321 2344444444321 23333222
Q ss_pred -------------------------------------------------------------------hh-----------
Q psy13848 115 -------------------------------------------------------------------LR----------- 116 (409)
Q Consensus 115 -------------------------------------------------------------------~~----------- 116 (409)
..
T Consensus 727 RLhplVC~pyNADFDGDEMnvHvPqS~eAraEA~~LM~~~~nilsP~~G~Pi~~~~QD~vlG~y~LT~~~~~~~~~g~~F 806 (1524)
T 2a6h_D 727 QLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEARIQMLSAHNLLSPASGEPLAKPSRDIILGLYYITQVRKEKKGAGLEF 806 (1524)
T ss_dssp EECSGGGTTTTCCTTTCEEEEECCCSHHHHHHHHHHSBTTTCCBCSSSSSBSSCCCHHHHHHHHHHHCCCCCCCCSCCCT
T ss_pred eeChhhcCCccCCcccceeeEecCCCHHHHHHHHHHhCCccceecCCCCCeeeeecccchhhheecccccccccCCCcee
Confidence 00
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 117 -------------------------------------------------------------------------------- 116 (409)
Q Consensus 117 -------------------------------------------------------------------------------- 116 (409)
T Consensus 807 ~~~~e~~~ay~~~~~~l~~~i~v~~~~~~~~~~~~~~p~P~~aIlKpwtGKQi~~~~~~~~I~~~~~~tt~Gr~ifn~~l 886 (1524)
T 2a6h_D 807 ATPEEALAAHERGEVALNAPIKVAGRETSVGRLKYVFANPDEALLAVAHGIVDLQDVVTVRYMGKRLETSPGRILFARIV 886 (1524)
T ss_dssp TSCHHHHHHHHHHHHTTSSCSSCCCSSCCHHHHHCEESSHHHHHHHHHTTSSCTTSCCEEECSSCEECCCHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCcCcCCceEEecccccccccccccCCchhhhcCCCCCccccccccccceecceeecccchhhHHHHh
Confidence
Q ss_pred ------------------------------------------------------------------------hHHHHHHh
Q psy13848 117 ------------------------------------------------------------------------AKERLLSE 124 (409)
Q Consensus 117 ------------------------------------------------------------------------~K~~iI~e 124 (409)
+|..++++
T Consensus 887 p~~l~~~~~P~d~~~inGvLdKk~LG~LI~~i~~~yG~~~t~~fLD~lk~Lg~~~lt~~GfSIGI~Dlii~~~K~eiI~e 966 (1524)
T 2a6h_D 887 AEAVEDEKVAWELIQLDVPQEKNSLKDLVYQAFLRLGMEKTARLLDALKYYGFTFSTTSGITIGIDDAVIPEEKKQYLEE 966 (1524)
T ss_dssp HHHSSCHHHHHHTCCTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCCSTTSCCCTTHHHHHHH
T ss_pred hhhcccccCCCcccceeceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhcCceeehhhccCCHHHHHHHHH
Confidence 01113333
Q ss_pred hhhhHHHHHHHhhcCCCcCCCCCChhhHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCcchhhhhcCCCcchhhHHHHH
Q psy13848 125 GYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELH---PSNGPLVMALSGSKGSFINISQMI 201 (409)
Q Consensus 125 g~~kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~~~ln~~~~~~g~~~~~~l~---p~N~~~~M~~sGsKGS~~Ni~Qi~ 201 (409)
++++|++++++|+.|.++ .+..+.+++++|+++++++++.|++++. +.|++++|+.||||||++|++||+
T Consensus 967 A~~~v~~i~~~y~~G~lt-------~~Er~~~Vi~iw~~a~d~v~~~~~~~L~~~~~~N~i~~Ma~SGAKGS~~NI~Ql~ 1039 (1524)
T 2a6h_D 967 ADRKLLQIEQAYEMGFLT-------DRERYDQILQLWTETTEKVTQAVFKNFEENYPFNPLYVMAQSGARGNPQQIRQLC 1039 (1524)
T ss_dssp HHHHHHHHHHHHHTTCSC-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHSSSSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCHHHHHHhcCCcCHHHHHHHH
Confidence 444555555556555542 3456788999999999999999999887 999999999999999999999999
Q ss_pred HHhcCcc-cCCcccCCCCCCCCCCCCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeecccccccccccccccc
Q psy13848 202 ACVGQQA-INGKRVPNGFDNRSLPHFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTD 280 (409)
Q Consensus 202 ~~vGQQ~-l~G~Rip~g~~gRtLPhF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~kt~ 280 (409)
||+|||. .+|+++| . +|.|||++||+| .|||||||+|| |||+|||+||
T Consensus 1040 gmrGqma~p~GkiIp---------~------------PI~ssF~eGLtp------~EyFfhtmGgR---eGLvDTAvKT- 1088 (1524)
T 2a6h_D 1040 GLRGLMQKPSGETFE---------V------------PVRSSFREGLTV------LEYFISSHGAR---KGGADTALRT- 1088 (1524)
T ss_dssp SCCCCCBCSSSCBCS---------S------------CCCCCSSSCCCS------HHHHHHHHHHH---HHHHHHHHHH-
T ss_pred hhccccccCCCCCcc---------c------------ccccccccCCCh------HHhheeccccc---CCccccceee-
Confidence 9999974 6666665 1 299999999999 99999999999 9999999999
Q ss_pred ccccCcchHHHHHHhhhcc
Q psy13848 281 KVRSRNGWLSSVLSSSLRF 299 (409)
Q Consensus 281 ~~tsrsGyl~r~L~~~l~F 299 (409)
|+||||||||++.++-
T Consensus 1089 ---AdSGYLqRRLVkv~qD 1104 (1524)
T 2a6h_D 1089 ---ADSGYLTRKLVDVTHE 1104 (1524)
T ss_dssp ---HHHHHHHHHHHHHHTT
T ss_pred ---ccCCcceeeeeeecce
Confidence 9999999999998865
No 5
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=100.00 E-value=1.4e-56 Score=504.12 Aligned_cols=117 Identities=17% Similarity=0.209 Sum_probs=107.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhcCC---CCCcchhhhhcCCCcchhhHHHHHHHhcCcc-cCCcccCCCCCCCCCC
Q psy13848 149 AEETLEAVILKELSVIRDHAGKACLQELH---PSNGPLVMALSGSKGSFINISQMIACVGQQA-INGKRVPNGFDNRSLP 224 (409)
Q Consensus 149 ~~EtLE~~v~~~ln~~~~~~g~~~~~~l~---p~N~~~~M~~sGsKGS~~Ni~Qi~~~vGQQ~-l~G~Rip~g~~gRtLP 224 (409)
..+.++++++++|+++++++++.+++++. +.|++++|+.||||||++|++||+||+|||. .+|+++ |
T Consensus 725 t~~e~~~~v~~~~~~~~d~~~~~~~~~l~~~~~~N~i~~Ma~SGAKGS~~ni~Ql~g~~G~ma~~~G~~i---------~ 795 (1265)
T 1hqm_D 725 TDRERYDQVIQLWTETTEKVTQAVFNNFEENYPFNPLYVMAQSGARGNPQQIRQLCGMRGLMQKPSGETF---------E 795 (1265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSSCTTTTTTTSSSCCHHHHHHHSSCCCCCCCTTSCCC---------S
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcHHHHHHhcCCcCHHHHHHHHhhccccccCCCCcc---------C
Confidence 35678899999999999999999999887 9999999999999999999999999999995 444443 2
Q ss_pred CCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeeccccccccccccccccccccCcchHHHHHHhhhcc
Q psy13848 225 HFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRF 299 (409)
Q Consensus 225 hF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~kt~~~tsrsGyl~r~L~~~l~F 299 (409)
++|.|||++||+| .|||||||+|| |||+|||+|| |+||||||||++.++-
T Consensus 796 ------------~pI~ssF~eGLtp------~EyFfhtmggR---eGLiDTAvKT----A~SGYLqRRLVkv~qD 845 (1265)
T 1hqm_D 796 ------------VPVRSSFREGLTV------LEYFISSHGAR---KGGADTALRT----ADSGYLTRKLVDVAHE 845 (1265)
T ss_dssp ------------CCCCCCBTTBCTT------CTHHHHHHHHT---THHHHHTHHH----HTSSSTHHHHHHHSCS
T ss_pred ------------cccccccccCCCh------HHhheeccccc---ccchhhhhhc----ccCCcceeeeeeecce
Confidence 5699999999999 99999999999 9999999999 9999999999998875
No 6
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=100.00 E-value=5.8e-56 Score=494.79 Aligned_cols=258 Identities=24% Similarity=0.330 Sum_probs=216.4
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchHH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEH 81 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~~~~~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~~ 81 (409)
+.+.|++||+||++||||+.+|.|.+...++|+|||+||||||+||||+|||||||||||||||+|||+|++||||||..
T Consensus 292 i~~~~~~LQ~~V~~l~Dn~~~g~~~~~~~~rplksl~qrLkGKeGrfR~NLmGKRVDfSaRSVIspdP~L~i~evGvP~~ 371 (1407)
T 3lu0_D 292 VRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKK 371 (1407)
T ss_dssp HHHHHHHHHHHHHHHHCSSSSCCCCBTTBCCCCCCTTHHHHTSSSTHHHHTTCCCCSSBCEEEEEECSSCCTTEEEEESH
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCcccCCCCCcccchHHHhccccchhhcccccCCCCCcCceEEeCCCCccceeeeCCHH
Confidence 56789999999999999999998876666799999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCceecc-------ccH---------------HHHHHHHH-------cCCCCCCCc------------------
Q psy13848 82 VAKILTYPERVHH-------ANK---------------EHLKQLVL-------NGPDKHPGL------------------ 114 (409)
Q Consensus 82 ~a~~lt~pe~v~~-------~N~---------------~~l~~lv~-------ng~~~~pGa------------------ 114 (409)
||.+||+|+.++. .|+ +.++.+++ +.|+.|...
T Consensus 372 ~A~~L~~Pf~i~~L~~~g~~~~i~~ak~~v~~~~~~v~~vl~~vi~gd~VLlNRqPTLHr~sIma~~~~l~~~ktirlnp 451 (1407)
T 3lu0_D 372 MALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHP 451 (1407)
T ss_dssp HHHHHTCHHHHHHHTTSSSCSSTTTTTTTTTSSCSSHHHHHHTTTTSCCEEEEESSCCSGGGEEEEEEEEESSSSEEECT
T ss_pred HHHHhcchHHHHHHHHcCccccHHHHHHHHHhcCCchhhHHHHHhhceeeeecCCcccccccceeeeEEecCCceEEeCh
Confidence 9999999864321 111 11111111 123333221
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 452 ~vC~~yNADFDGDeMnvHvPqs~eAraEa~~Lm~~~~nilsP~~G~Pi~~~~QD~llG~y~lT~~~~~~~~~~~~F~~~~ 531 (1407)
T 3lu0_D 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPK 531 (1407)
T ss_dssp GGGGTTTCCSSSCEEEEECCCSSHHHHTTTTSSBTTTCCSCSSSSSCSSCCCSHHHHHHHHHSCCCCCSCCSCCCCSSCS
T ss_pred hhcccccCCcccceeeeecCCCHHHHHHHHHHHhCccccccCCCCCceeeecccchheeEEeecccccccCCcceeCCHH
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy13848 115 -------------------------------------------------------------------------------- 114 (409)
Q Consensus 115 -------------------------------------------------------------------------------- 114 (409)
T Consensus 532 ev~~al~~g~v~l~a~i~vr~~~~~~~~~g~~~~~~~~~~tt~Gr~ifs~ilP~~~~~~~ing~l~KK~lg~LI~~i~~~ 611 (1407)
T 3lu0_D 532 EAERLYRSGLASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVPKGLPYSIVNQALGKKAISKMLNTCYRI 611 (1407)
T ss_dssp HHHHHHHHSSSSSSSCSSSSCCCCSCSHHHHHHHTTTSCCSSSHHHHHHHHGGGSSCCTTTTTCCSSSTTTTHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCeeEEecCccccCcCCcccccceeeecCCccccHHhhCCCCCCceeeecccchhhHHHHHHHHHHH
Confidence
Q ss_pred -----------------------------------hhhHHHHHHhhhhhHHHHHHHhhcCCCcCCCCCChhhHHHHHHHH
Q psy13848 115 -----------------------------------LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILK 159 (409)
Q Consensus 115 -----------------------------------~~~K~~iI~eg~~kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~~ 159 (409)
-.+|.+++++++++|++++++|+.|.|+..+ .+.++++
T Consensus 612 ~G~~~t~~flD~lk~Lgf~~at~~GfSIgI~D~~ip~~K~~iI~~A~~eV~ei~~~y~~G~lt~~e-------r~~kVi~ 684 (1407)
T 3lu0_D 612 LGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGE-------RYNKVID 684 (1407)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHTCCCCSTTSCCCTTHHHHHHHHHTHHHHHHHHHHHTSCCSST-------TTTTHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHHhcCeEEeeccCccChHHHHHHHHHHHHHHHHHHHHHcCCCccch-------HHHHHHH
Confidence 2357779999999999999999999998643 3568999
Q ss_pred HHHHHHHHHHhhhhhcCC---------------CCCcchhhhhcCCCcchhhHHHHHHHhcCcccCCcccCCCCCCCCCC
Q psy13848 160 ELSVIRDHAGKACLQELH---------------PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLP 224 (409)
Q Consensus 160 ~ln~~~~~~g~~~~~~l~---------------p~N~~~~M~~sGsKGS~~Ni~Qi~~~vGQQ~l~G~Rip~g~~gRtLP 224 (409)
+|+++++++++.+++++. +.|++++|+.||||||+.|++||+||+|||.. |.|. ..
T Consensus 685 iw~~a~e~v~~~m~~~l~~~~~~d~~G~~~~l~~~N~i~mMa~SGARGS~~qI~QLaGmrGlmak-----pdG~---ii- 755 (1407)
T 3lu0_D 685 IWAAANDRVSKAMMDNLQTETVINRDGQEEKQVSFNSIYMMADSGARGSAAQIRQLAGMRGLMAK-----PDGS---II- 755 (1407)
T ss_dssp HHHTHHHHHHHHHHTTHHHH------------CSCCHHHHHHHSSSSCCTTHHHHHSSCCCCCBC-----SSSC---BC-
T ss_pred HHHHHHHHHHHHHHHhccccccccccccccccCCCCChheeeeccccCCHHHHHHHHHhcCCccC-----CCCC---Cc-
Confidence 999999999999997653 68999999999999999999999999999973 3221 11
Q ss_pred CCCCCCCCCCCCCeeecCCcCCcccchhhhhhhhhheeeeccccccccccccccccccccCcchHHHHHHhhhcc
Q psy13848 225 HFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRF 299 (409)
Q Consensus 225 hF~~~d~~~~a~GfI~nsf~~GL~p~~~~lk~e~~~h~~~gr~~~~gl~~ta~kt~~~tsrsGyl~r~L~~~l~F 299 (409)
..+|.+||++||+| .|||||+|+|| +||+|||+|| ++||||||+|++.++-
T Consensus 756 -----------e~PI~ssFreGLtp------~EyFfst~GaR---KGL~DTALKT----AdSGYLTRRLVdv~QD 806 (1407)
T 3lu0_D 756 -----------ETPITANFREGLNV------LQYFISTHGAR---KGLADTALKT----ANSGYLTRRLVDVAQD 806 (1407)
T ss_dssp -----------SSCCCCCSSSCCCH------HHHHHHHHHHH---HHHHHTTTTT----TCTTTTTHHHHTTSTT
T ss_pred -----------chhhhcccccCCCH------HHhhhhcccch---hhhhhhhhhc----ccchhHHHHHHHhhcc
Confidence 24688999999999 99999999999 9999999999 9999999999999876
No 7
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase subunit A', DNA-directed...; transcription, fusion protein, chimera protein, multiprotein; 3.30A {Pyrococcus furiosus}
Probab=99.77 E-value=8.1e-20 Score=188.02 Aligned_cols=75 Identities=39% Similarity=0.615 Sum_probs=43.0
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCC-CCCchhhHHHhhcCcceeeecccCCccCCCCC-eeecCCCCCCcccccch
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQP-KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSR-TVISPDPNLQIYQVGIP 79 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~-~~~~k~~~~~l~gK~G~~R~nl~GKRvdfs~R-sVI~pdP~L~~~evgiP 79 (409)
+.+.|++||+||++||||+.+|.|.+.++ ++|+|||+||||||+||||+||||||||||+| |||
T Consensus 329 i~~~~~lLQ~~V~~~~dn~~~g~~~~~~~~~rp~ksi~~rLkGKeGRfR~NL~GKRVdy~~~~s~~-------------- 394 (436)
T 3qqc_A 329 IEDLWDLLQYHVTTYINNEAPGVPPAKHKSGRPLKTLAQRLKGKEGRFRGNLSGGAGSGAGSGSVL-------------- 394 (436)
T ss_dssp HHHHHHHHHHHHHHHHCTTCTTCCCCBCTTSCBCCCHHHHHCC-------------------------------------
T ss_pred HHHHHHHHHHHHHhhccCCCCCCCccccCCCCCccchHhhhccccceecCcCCCCCCCcccchhHH--------------
Confidence 56899999999999999999999987654 59999999999999999999999999999999 999
Q ss_pred HHHHHHcCCCc
Q psy13848 80 EHVAKILTYPE 90 (409)
Q Consensus 80 ~~~a~~lt~pe 90 (409)
.++|.++|+|.
T Consensus 395 ~~~~~e~~~~~ 405 (436)
T 3qqc_A 395 ARAAFEITVQH 405 (436)
T ss_dssp ----CCCCHHH
T ss_pred HHHHHHHHHHH
Confidence 56777777654
No 8
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.32 E-value=4.4e-13 Score=156.22 Aligned_cols=68 Identities=37% Similarity=0.456 Sum_probs=58.7
Q ss_pred ccCCCCCCCCccccCCCcchhhhhheeeccCCCCCCeeeeEeeecccccccccCCcCCcE-EEEcCccccceEEEEechh
Q psy13848 302 HETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF-RERNTACKISHVTFCVDSP 380 (409)
Q Consensus 302 ~~~~~~lp~Pai~kp~~LWTGKQifS~iLp~~~~~~~~lnl~~k~k~~~~~~~~~~~d~~-~i~~g~~~~eL~~GviDk~ 380 (409)
..+...+|+|||+||++|||||||||++||++ +||..+++. ....|..|.+ +|+|| |||+|+|||+
T Consensus 560 ~~~~~~~~~pai~kp~~~wtGkqifs~ilp~~------~~~~~~~~~---~~~~~~~d~~v~i~~g----ell~g~l~K~ 626 (1752)
T 3h0g_A 560 PDWDGILPPPVILKPKVLWTGKQILSLIIPKG------INLIRDDDK---QSLSNPTDSGMLIENG----EIIYGVVDKK 626 (1752)
T ss_dssp SSCCSSCCCCSBCSSSCEEETTHHHHTTSCSS------BCEECCCSS---CCSSCTTTCSEEECBS----CEEEECCSHH
T ss_pred cccCCccCccceecCcCCCchhhHHhhhCcCC------CCceecccc---ccCcCCCcCeEEEEcC----eEEecccchH
Confidence 34556899999999999999999999999987 999887652 2356888887 99999 9999999999
Q ss_pred hH
Q psy13848 381 TE 382 (409)
Q Consensus 381 ~~ 382 (409)
++
T Consensus 627 ~l 628 (1752)
T 3h0g_A 627 TV 628 (1752)
T ss_dssp HH
T ss_pred Hh
Confidence 97
No 9
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Probab=99.30 E-value=3.7e-13 Score=156.84 Aligned_cols=68 Identities=29% Similarity=0.376 Sum_probs=56.7
Q ss_pred cCCCCCCCCccccCCCcchhhhhheeeccCCCCCCeeeeEeeecccccccccCCcCCcE-EEEcCccccceEEEEechhh
Q psy13848 303 ETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF-RERNTACKISHVTFCVDSPT 381 (409)
Q Consensus 303 ~~~~~lp~Pai~kp~~LWTGKQifS~iLp~~~~~~~~lnl~~k~k~~~~~~~~~~~d~~-~i~~g~~~~eL~~GviDk~~ 381 (409)
.+...+|+|||+||+++||||||||++||++ +|+..+++. +...|+.|.+ +|+|| ||++|+|||++
T Consensus 555 ~~~~~~~~pai~kp~~~wtGkqifs~ilp~~------~~~~~~~~~---~~~~~~~d~~v~i~~g----el~~g~ldKk~ 621 (1733)
T 1twf_A 555 DWDGVIPTPAIIKPKPLWSGKQILSVAIPNG------IHLQRFDEG---TTLLSPKDNGMLIIDG----QIIFGVVEKKT 621 (1733)
T ss_dssp TCCSCCCCCSBCSSSCEEEHHHHHHHHSCTT------CCEEECCTT---CCTTCTTCCSEEEETT----EEEESCCCHHH
T ss_pred hhcCccCCccccCcccCccHHHHHHHhCCCC------CceeecCCC---cccCCcccceEEEeCC----cEEEeecchHH
Confidence 3455899999999999999999999999987 888876532 2345667776 99999 99999999997
Q ss_pred HH
Q psy13848 382 EI 383 (409)
Q Consensus 382 ~~ 383 (409)
+-
T Consensus 622 lg 623 (1733)
T 1twf_A 622 VG 623 (1733)
T ss_dssp HS
T ss_pred hc
Confidence 63
No 10
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A 2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Probab=99.25 E-value=2.1e-12 Score=143.05 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=61.6
Q ss_pred cccCCCCCCCCccccCCCcchhhhhheeeccCCCCCCeeeeEeeeccccccc----ccCCcCCcE-EEEcCccccceEEE
Q psy13848 301 EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK----FSIMVKDQF-RERNTACKISHVTF 375 (409)
Q Consensus 301 ~~~~~~~lp~Pai~kp~~LWTGKQifS~iLp~~~~~~~~lnl~~k~k~~~~~----~~~~~~d~~-~i~~g~~~~eL~~G 375 (409)
...+.+.+|+|||++|.++||||||||+++|++ +|+..+.+..... .+.|+.|.+ +|+|| +|++|
T Consensus 527 ~~~~~~~~~~p~i~~~~~~~tgkqi~s~~lp~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~g----~l~~g 596 (880)
T 4ayb_A 527 VADVKIDLGEPAILAPREYYTGKQVVSAFLPKD------FNFHGQANVSSGPRLCKNEDCPHDSYVVIKNG----ILLEG 596 (880)
T ss_dssp TSCCCCCCCSCSEESSSEEEEHHHHHHTTSCTT------CCEEEECTTCSGGGCCSSSCCTTSCEEEEETT----EEEEC
T ss_pred ccceecccCccceecceeEeccceEEEEEeccc------ccccceeEeecCCccccCccCCCcceEEEeCc----eeeee
Confidence 356788999999999999999999999999998 7777776654432 367888988 99999 99999
Q ss_pred EechhhH
Q psy13848 376 CVDSPTE 382 (409)
Q Consensus 376 viDk~~~ 382 (409)
++||+++
T Consensus 597 ~ldk~~l 603 (880)
T 4ayb_A 597 VFDKKAI 603 (880)
T ss_dssp CCSTTTS
T ss_pred eecchhh
Confidence 9999876
No 11
>1hqm_D DNA-directed RNA polymerase; transferase, transcription, 3D- structure; 3.30A {Thermus aquaticus} SCOP: i.8.1.1 PDB: 1i6v_D* 2gho_D
Probab=95.34 E-value=0.0054 Score=70.34 Aligned_cols=147 Identities=29% Similarity=0.391 Sum_probs=121.4
Q ss_pred hhHhHHHHHHHHHHHHcCCCCCCCCCCCCCCC-chhhHHHhhcCcceeeecccCCccCCCCCeeecCCCCCCcccccchH
Q psy13848 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPE 80 (409)
Q Consensus 2 i~~~~~~LQ~~v~~~~~~~~~~~~~~~~~~~~-~k~~~~~l~gK~G~~R~nl~GKRvdfs~RsVI~pdP~L~~~evgiP~ 80 (409)
+.+.|++||.||++||||+.+|.|.....++| +|||+||||||+||||+|||||||||||||||+|||||++||||||.
T Consensus 307 i~~~~~~LQ~~V~~l~Dn~~~g~~~~~~~~rp~lksl~~~LkGK~GrfR~NLmGKRVdfSaRSVI~pdP~L~i~evGvP~ 386 (1265)
T 1hqm_D 307 IRNEKRMLQEAVDAVIDNGRRGSPVTNPGSERPLRSLTDILSGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPK 386 (1265)
T ss_dssp TSTTTTTTGGGTTTTSSCCSSCCCSSCSSCCCCCCCSTTTSSSTTCTTTTTTSCCEETTCCCCBEEECCSSSSSBCCCBH
T ss_pred HHHHHHHHHHHHHHHhCCCCCCCCccCCCCCccccchhhhcccchhhhhhhhcccccCcccceeEecCCCcccccccChH
Confidence 45789999999999999999999876666789 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceeccccHHHHHHHHHcCC-CCCCCc---------------------------------------hhhHHH
Q psy13848 81 HVAKILTYPERVHHANKEHLKQLVLNGP-DKHPGL---------------------------------------LRAKER 120 (409)
Q Consensus 81 ~~a~~lt~pe~v~~~N~~~l~~lv~ng~-~~~pGa---------------------------------------~~~K~~ 120 (409)
.||.+||+|+. +++|+.||+ ..+++| ++..+.
T Consensus 387 ~~A~~L~~P~~--------~~~lv~~g~~~~i~~ak~~i~~~~~~~~~~~~v~~~v~~gd~VLlNRqPTLHr~sIma~~~ 458 (1265)
T 1hqm_D 387 RMALELFKPFL--------LKKMEEKAFAPNVKAARRMLERQRDIKDEVWDALEEVIHGKVVLLNRAPTLHRLGIQAFQP 458 (1265)
T ss_dssp HHHHHHHHHHH--------HHHHHHTTCSSCSHHHHHHHCSSSCCCHHHHTTTTTTTTTCCEECCCSSCCSGGGSCEEBC
T ss_pred HHHHHhCcHHH--------HHHHHHcCCcchhhhhhhhhhhccccCCccceeEEEeccCcEEEEecCcccccccccceeE
Confidence 99999999962 356777775 344444 111111
Q ss_pred ------HHHhhhhhHHHHHHHhhcCCCcCCCCCChhhHHHHH
Q psy13848 121 ------LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAV 156 (409)
Q Consensus 121 ------iI~eg~~kc~~~iadf~~GqLe~qpG~t~~EtLE~~ 156 (409)
.++-.+..|..|+|||++|+|..+...+.+...|+.
T Consensus 459 ~l~~~ktirlhp~vC~~yNADFDGDeMnvHvPqs~eA~aEa~ 500 (1265)
T 1hqm_D 459 VLVEGQSIQLHPLVCEAFNADFDGDQMAVHVPLSSFAQAEAR 500 (1265)
T ss_dssp CCBSSSSEEECGGGHHHHCCCSSSCBCCCCCCCSTHHHHTTS
T ss_pred EecCCCeEEechhhcCCcCCCcccceEEEecCCCHHHHHHHH
Confidence 111224589999999999999999998887777753
No 12
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=93.29 E-value=0.028 Score=64.53 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=25.6
Q ss_pred hhHHHHHHHhhcCCCcCCCCCChhhHHHHH
Q psy13848 127 SKCEGYIRAMESGRLQTQPGCSAEETLEAV 156 (409)
Q Consensus 127 ~kc~~~iadf~~GqLe~qpG~t~~EtLE~~ 156 (409)
..|..|+|||++|+|..+...+.+...|+.
T Consensus 452 ~vC~~yNADFDGDeMnvHvPqs~eAraEa~ 481 (1407)
T 3lu0_D 452 LVCAAYNADFDGDQMAVHVPLTLEAQLEAR 481 (1407)
T ss_dssp GGGGTTTCCSSSCEEEEECCCSSHHHHTTT
T ss_pred hhcccccCCcccceeeeecCCCHHHHHHHH
Confidence 488999999999999999998877776653
No 13
>2a6h_D DNA-directed RNA polymerase beta' chain; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: e.29.1.2 PDB: 1smy_D* 1zyr_D* 1iw7_D* 2a69_D* 2a6e_D 2a68_D* 2be5_D* 2cw0_D 2o5i_D 2o5j_D* 2ppb_D* 3aoh_D* 3aoi_D* 3dxj_D* 3eql_D* 1ynj_D* 1l9z_D 1l9u_D* 1ynn_D* 2auj_D
Probab=90.20 E-value=0.055 Score=62.85 Aligned_cols=32 Identities=19% Similarity=0.241 Sum_probs=27.8
Q ss_pred hhHHHHHHHhhcCCCcCCCCCChhhHHHHHHH
Q psy13848 127 SKCEGYIRAMESGRLQTQPGCSAEETLEAVIL 158 (409)
Q Consensus 127 ~kc~~~iadf~~GqLe~qpG~t~~EtLE~~v~ 158 (409)
..|..|+|||++|+|..|...+.+...|+...
T Consensus 731 lVC~pyNADFDGDEMnvHvPqS~eAraEA~~L 762 (1524)
T 2a6h_D 731 LVCEAFNADFDGDQMAVHVPLSSFAQAEARIQ 762 (1524)
T ss_dssp GGGTTTTCCTTTCEEEEECCCSHHHHHHHHHH
T ss_pred hhcCCccCCcccceeeEecCCCHHHHHHHHHH
Confidence 38999999999999999999998888887554
Done!