Your job contains 1 sequence.
>psy13848
MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT
SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER
LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSN
GPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK
FLRYGNRLKIASELKSAYLVWRVAGSISARGELHPKQKTDKVRSRNGWLSSVLSSSLRFR
EHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQ
FRERNTACKISHVTFCVDSPTEIQQQSGPGNKYSPSYSNRTGTVPSMLI
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13848
(409 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050208-103 - symbol:polr3a "polymerase (RNA... 497 1.5e-89 2
UNIPROTKB|E9PTB6 - symbol:Polr3a "DNA-directed RNA polyme... 491 7.4e-89 2
UNIPROTKB|F1NIK7 - symbol:POLR3A "DNA-directed RNA polyme... 492 1.4e-88 2
UNIPROTKB|Q5ZL98 - symbol:POLR3A "DNA-directed RNA polyme... 492 1.4e-88 2
UNIPROTKB|E2QXD8 - symbol:POLR3A "DNA-directed RNA polyme... 491 2.2e-88 2
UNIPROTKB|J9P629 - symbol:POLR3A "DNA-directed RNA polyme... 491 2.2e-88 2
UNIPROTKB|O14802 - symbol:POLR3A "DNA-directed RNA polyme... 491 2.2e-88 2
UNIPROTKB|A4IF62 - symbol:POLR3A "DNA-directed RNA polyme... 491 2.2e-88 2
UNIPROTKB|F1S2E6 - symbol:POLR3A "DNA-directed RNA polyme... 490 3.7e-88 2
FB|FBgn0030687 - symbol:CG17209 species:7227 "Drosophila ... 440 2.1e-82 2
WB|WBGene00004411 - symbol:rpc-1 species:6239 "Caenorhabd... 427 1.5e-76 2
DICTYBASE|DDB_G0277199 - symbol:rpc1 "RNA polymerase III,... 384 5.1e-68 2
POMBASE|SPBC651.08c - symbol:rpc1 "DNA-directed RNA polym... 368 1.3e-65 2
CGD|CAL0002215 - symbol:orf19.3103 species:5476 "Candida ... 341 5.7e-62 2
SGD|S000005642 - symbol:RPO31 "RNA polymerase III largest... 340 2.5e-61 2
ASPGD|ASPL0000047704 - symbol:AN10316 species:162425 "Eme... 332 4.1e-57 2
GENEDB_PFALCIPARUM|PF13_0150 - symbol:PF13_0150 "DNA-dire... 305 8.4e-52 2
UNIPROTKB|Q8IE49 - symbol:PF13_0150 "DNA-directed RNA pol... 305 8.4e-52 2
DICTYBASE|DDB_G0279193 - symbol:rpb1 "RNA polymerase II c... 291 3.1e-46 2
POMBASE|SPBC28F2.12 - symbol:rpb1 "RNA polymerase II larg... 283 3.1e-45 2
FB|FBgn0003277 - symbol:RpII215 "RNA polymerase II 215kD ... 279 2.1e-43 4
ASPGD|ASPL0000054301 - symbol:AN0809 species:162425 "Emer... 282 1.4e-42 3
ZFIN|ZDB-GENE-041008-78 - symbol:polr2a "polymerase (RNA)... 284 6.8e-42 3
UNIPROTKB|G4MT89 - symbol:MGG_04652 "DNA-directed RNA pol... 276 5.1e-41 3
UNIPROTKB|J9NW09 - symbol:POLR2A "DNA-directed RNA polyme... 273 6.3e-39 4
UNIPROTKB|F1PGS0 - symbol:POLR2A "DNA-directed RNA polyme... 273 1.0e-38 4
UNIPROTKB|G3MZY8 - symbol:POLR2A "DNA-directed RNA polyme... 273 1.0e-38 4
UNIPROTKB|P24928 - symbol:POLR2A "DNA-directed RNA polyme... 273 1.0e-38 4
MGI|MGI:98086 - symbol:Polr2a "polymerase (RNA) II (DNA d... 273 1.0e-38 4
RGD|1587326 - symbol:Polr2a "polymerase (RNA) II (DNA dir... 273 1.0e-38 4
UNIPROTKB|I3LJR4 - symbol:POLR2A "DNA-directed RNA polyme... 273 1.9e-38 2
WB|WBGene00000123 - symbol:ama-1 species:6239 "Caenorhabd... 245 1.3e-35 3
UNIPROTKB|P16356 - symbol:ama-1 "DNA-directed RNA polymer... 245 1.3e-35 3
SGD|S000002299 - symbol:RPO21 "RNA polymerase II largest ... 295 3.3e-26 2
CGD|CAL0001661 - symbol:RPA190 species:5476 "Candida albi... 214 3.8e-24 2
SGD|S000005868 - symbol:RPA190 "RNA polymerase I largest ... 201 7.7e-23 2
CGD|CAL0000919 - symbol:RPO21 species:5476 "Candida albic... 277 1.1e-22 3
UNIPROTKB|Q5ACI7 - symbol:RPO21 "DNA-directed RNA polymer... 277 1.1e-22 3
UNIPROTKB|G4NBX7 - symbol:MGG_01158 "DNA-directed RNA pol... 227 2.7e-22 2
UNIPROTKB|Q6NX41 - symbol:POLR2A "DNA-directed RNA polyme... 273 8.6e-22 1
FB|FBgn0019938 - symbol:RpI1 "RNA polymerase I subunit" s... 211 1.6e-21 2
DICTYBASE|DDB_G0275759 - symbol:rpa1 "RNA polymerase I, l... 203 1.3e-20 2
TAIR|locus:2076661 - symbol:NRPA1 "nuclear RNA polymerase... 216 2.1e-20 2
UNIPROTKB|F1LQN7 - symbol:Polr1a "DNA-directed RNA polyme... 194 1.3e-18 2
MGI|MGI:1096397 - symbol:Polr1a "polymerase (RNA) I polyp... 197 2.2e-18 2
POMBASE|SPBC4C3.05c - symbol:nuc1 "DNA-directed RNA polym... 189 4.1e-18 2
WB|WBGene00012999 - symbol:rpoa-1 species:6239 "Caenorhab... 190 4.3e-18 2
RGD|620824 - symbol:Polr1a "polymerase (RNA) I polypeptid... 194 4.9e-18 2
UNIPROTKB|G3V7B7 - symbol:Polr1a "DNA-directed RNA polyme... 194 4.9e-18 2
UNIPROTKB|E1BIX2 - symbol:POLR1A "DNA-directed RNA polyme... 194 4.9e-18 2
UNIPROTKB|J9P5G4 - symbol:POLR1A "DNA-directed RNA polyme... 193 6.3e-18 2
UNIPROTKB|E2R0G4 - symbol:POLR1A "DNA-directed RNA polyme... 193 6.6e-18 2
UNIPROTKB|F1SVC3 - symbol:POLR1A "DNA-directed RNA polyme... 192 1.3e-17 2
ZFIN|ZDB-GENE-030131-5286 - symbol:polr1a "polymerase (RN... 177 1.2e-16 2
UNIPROTKB|B9ZVN9 - symbol:POLR1A "DNA-directed RNA polyme... 196 6.7e-13 2
UNIPROTKB|O95602 - symbol:POLR1A "DNA-directed RNA polyme... 196 7.3e-13 2
TIGR_CMR|BA_0103 - symbol:BA_0103 "DNA-directed RNA polym... 158 2.2e-09 2
UNIPROTKB|P37871 - symbol:rpoC "DNA-directed RNA polymera... 153 4.9e-09 2
TIGR_CMR|CPS_4768 - symbol:CPS_4768 "DNA-directed RNA pol... 143 6.0e-07 2
TIGR_CMR|NSE_0677 - symbol:NSE_0677 "DNA-directed RNA pol... 143 7.2e-07 2
UNIPROTKB|P0A674 - symbol:rpoC "DNA-directed RNA polymera... 142 1.1e-06 2
TIGR_CMR|APH_1023 - symbol:APH_1023 "DNA-directed RNA pol... 151 1.7e-06 2
TIGR_CMR|SPO_3507 - symbol:SPO_3507 "DNA-directed RNA pol... 146 1.9e-06 2
TIGR_CMR|ECH_0951 - symbol:ECH_0951 "DNA-directed RNA pol... 149 2.9e-06 2
TIGR_CMR|SO_0225 - symbol:SO_0225 "DNA-directed RNA polym... 143 3.1e-06 2
TIGR_CMR|CHY_2317 - symbol:CHY_2317 "DNA-directed RNA pol... 144 8.0e-06 2
TIGR_CMR|DET_0604 - symbol:DET_0604 "DNA-directed RNA pol... 144 8.2e-06 2
UNIPROTKB|Q9KV29 - symbol:rpoC "DNA-directed RNA polymera... 141 1.6e-05 2
TIGR_CMR|VC_0329 - symbol:VC_0329 "DNA-directed RNA polym... 141 1.6e-05 2
TIGR_CMR|CJE_0529 - symbol:CJE_0529 "DNA-directed RNA pol... 135 2.7e-05 2
UNIPROTKB|P0A8T7 - symbol:rpoC "RNA polymerase, beta' sub... 140 3.4e-05 2
TAIR|locus:2015163 - symbol:NRPD1A "nuclear RNA polymeras... 119 0.00016 2
UNIPROTKB|P0C504 - symbol:rpoC1 "DNA-directed RNA polymer... 120 0.00050 1
UNIPROTKB|P0C505 - symbol:rpoC1 "DNA-directed RNA polymer... 120 0.00050 1
UNIPROTKB|P0C506 - symbol:rpoC1 "DNA-directed RNA polymer... 120 0.00050 1
UNIPROTKB|Q6ENI3 - symbol:rpoC1 "DNA-directed RNA polymer... 120 0.00050 1
TIGR_CMR|CBU_0232 - symbol:CBU_0232 "DNA-directed RNA pol... 132 0.00052 2
UNIPROTKB|H9L2Z1 - symbol:H9L2Z1 "DNA-directed RNA polyme... 116 0.00094 1
UNIPROTKB|H9L2Z2 - symbol:H9L2Z2 "DNA-directed RNA polyme... 116 0.00096 1
>ZFIN|ZDB-GENE-050208-103 [details] [associations]
symbol:polr3a "polymerase (RNA) III (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
ZFIN:ZDB-GENE-050208-103 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
KO:K03018 GO:GO:0032549 GeneTree:ENSGT00700000104490
PANTHER:PTHR19376:SF15 EMBL:CABZ01084340 EMBL:CABZ01084341
EMBL:CABZ01084342 EMBL:CABZ01084343 EMBL:CABZ01084344
EMBL:CABZ01084345 EMBL:CABZ01084346 IPI:IPI00960980
RefSeq:XP_003199716.1 UniGene:Dr.109694 Ensembl:ENSDART00000105273
GeneID:572258 KEGG:dre:572258 NextBio:20890901 Bgee:E7F5P2
Uniprot:E7F5P2
Length = 1390
Score = 497 (180.0 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 96/127 (75%), Positives = 110/127 (86%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK+ LL GY KC+ YI A+++GRLQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKQELLDAGYEKCDEYIDALKTGRLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFQKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 441 (160.3 bits), Expect = 1.5e-89, Sum P(2) = 1.5e-89
Identities = 82/113 (72%), Positives = 97/113 (85%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILTYPE+V+ AN E +++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTYPEKVNKANIELMRKLVRNGPEVHPG 417
Score = 137 (53.3 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
Identities = 27/44 (61%), Positives = 32/44 (72%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS-IMVKDQF 361
LWTGKQIFSLILKP++ CPV ANL+TKG+ Y K + D F
Sbjct: 594 LWTGKQIFSLILKPSKSCPVMANLRTKGKQYCGKGEDLCANDSF 637
Score = 61 (26.5 bits), Expect = 2.3e-55, Sum P(3) = 2.3e-55
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDVVER 452
Score = 41 (19.5 bits), Expect = 2.5e-45, Sum P(3) = 2.5e-45
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRTKACQI 567
>UNIPROTKB|E9PTB6 [details] [associations]
symbol:Polr3a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0032728
"positive regulation of interferon-beta production" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:1305574 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032728
GO:GO:0032549 GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
IPI:IPI00766228 PRIDE:E9PTB6 Ensembl:ENSRNOT00000013501
Uniprot:E9PTB6
Length = 1342
Score = 491 (177.9 bits), Expect = 7.4e-89, Sum P(2) = 7.4e-89
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 440 (159.9 bits), Expect = 7.4e-89, Sum P(2) = 7.4e-89
Identities = 82/113 (72%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPDVHPG 417
Score = 122 (48.0 bits), Expect = 7.2e-54, Sum P(3) = 7.2e-54
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y K
Sbjct: 594 LWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGK 627
Score = 62 (26.9 bits), Expect = 7.2e-54, Sum P(3) = 7.2e-54
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDIVER 452
Score = 39 (18.8 bits), Expect = 3.3e-45, Sum P(3) = 3.3e-45
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|F1NIK7 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045087
"innate immune response" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
IPI:IPI00580235 EMBL:AADN02027942 EMBL:AADN02027940
EMBL:AADN02027941 Ensembl:ENSGALT00000007929 Uniprot:F1NIK7
Length = 1390
Score = 492 (178.3 bits), Expect = 1.4e-88, Sum P(2) = 1.4e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 437 (158.9 bits), Expect = 1.4e-88, Sum P(2) = 1.4e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Score = 139 (54.0 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 25/34 (73%), Positives = 29/34 (85%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
LWTGKQ+FSLILKP+ DCPV ANL+TKG+ Y K
Sbjct: 594 LWTGKQVFSLILKPSDDCPVKANLRTKGKQYCGK 627
Score = 62 (26.9 bits), Expect = 3.0e-55, Sum P(3) = 3.0e-55
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDIVER 452
Score = 39 (18.8 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|Q5ZL98 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 HOVERGEN:HBG004339
CTD:11128 HOGENOM:HOG000222974 OrthoDB:EOG4QVCB4
PANTHER:PTHR19376:SF15 EMBL:AJ719836 IPI:IPI00580235
RefSeq:NP_001006500.1 UniGene:Gga.11367 ProteinModelPortal:Q5ZL98
STRING:Q5ZL98 PRIDE:Q5ZL98 GeneID:423727 KEGG:gga:423727
InParanoid:Q5ZL98 NextBio:20826153 Uniprot:Q5ZL98
Length = 1390
Score = 492 (178.3 bits), Expect = 1.4e-88, Sum P(2) = 1.4e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLHAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL+MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLIMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 437 (158.9 bits), Expect = 1.4e-88, Sum P(2) = 1.4e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN +++LV NGPD HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPIHVAKILTFPEKVNKANINFMRKLVRNGPDVHPG 417
Score = 133 (51.9 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
LWTGKQ+FS ILKP+ DCPV ANL+TKG+ Y K
Sbjct: 594 LWTGKQVFSSILKPSDDCPVKANLRTKGKQYCGK 627
Score = 62 (26.9 bits), Expect = 1.3e-54, Sum P(3) = 1.3e-54
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDIVER 452
Score = 39 (18.8 bits), Expect = 8.3e-45, Sum P(3) = 8.3e-45
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|E2QXD8 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
GeneTree:ENSGT00700000104490 PANTHER:PTHR19376:SF15
EMBL:AAEX03002853 Ensembl:ENSCAFT00000024699 Uniprot:E2QXD8
Length = 1376
Score = 491 (177.9 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 711 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 770
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 771 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 830
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 831 PAAKGFV 837
Score = 436 (158.5 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 124 (48.7 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS-IMVKDQF 361
LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y K + V D +
Sbjct: 597 LWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSY 640
Score = 62 (26.9 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKYGDIVER 452
Score = 46 (21.3 bits), Expect = 1.9e-45, Sum P(3) = 1.9e-45
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 329 ILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQFRERNTACKI 370
++ P P+ A ++ A+ + + +KD F +R AC+I
Sbjct: 529 LVTPRNGEPLIAAIQDFLTAFVGAYLLTLKDTFFDRAKACQI 570
>UNIPROTKB|J9P629 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 CTD:11128 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:AAEX03002853 RefSeq:XP_536399.2
Ensembl:ENSCAFT00000047369 GeneID:479256 KEGG:cfa:479256
Uniprot:J9P629
Length = 1390
Score = 491 (177.9 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 436 (158.5 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 124 (48.7 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS-IMVKDQF 361
LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y K + V D +
Sbjct: 594 LWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGKGEDLCVNDSY 637
Score = 62 (26.9 bits), Expect = 1.4e-53, Sum P(3) = 1.4e-53
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKYGDIVER 452
Score = 39 (18.8 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|O14802 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=NAS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0045087 "innate immune response" evidence=IMP]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IMP] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=TAS]
[GO:0006385 "transcription elongation from RNA polymerase III
promoter" evidence=TAS] [GO:0006386 "termination of RNA polymerase
III transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:CH471083 GO:GO:0045087 GO:GO:0051607 Gene3D:2.40.40.20
InterPro:IPR009010 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
GO:GO:0032728 KO:K03018 GO:GO:0006386 GO:GO:0006385 eggNOG:COG0086
GO:GO:0032549 HOVERGEN:HBG004339 CTD:11128 HOGENOM:HOG000222974
OMA:PRRPLIF OrthoDB:EOG4QVCB4 PANTHER:PTHR19376:SF15 EMBL:AF021351
EMBL:AL512628 EMBL:BC041089 EMBL:AY091459 IPI:IPI00024163
RefSeq:NP_008986.2 UniGene:Hs.436896 ProteinModelPortal:O14802
SMR:O14802 IntAct:O14802 STRING:O14802 PhosphoSite:O14802
PaxDb:O14802 PRIDE:O14802 Ensembl:ENST00000372371 GeneID:11128
KEGG:hsa:11128 UCSC:uc001jzn.3 GeneCards:GC10M079729
HGNC:HGNC:30074 HPA:HPA037926 MIM:607694 MIM:614258
neXtProt:NX_O14802 Orphanet:88637 Orphanet:77295
PharmGKB:PA134900426 InParanoid:O14802 PhylomeDB:O14802
ChiTaRS:POLR3A GenomeRNAi:11128 NextBio:42292 ArrayExpress:O14802
Bgee:O14802 CleanEx:HS_POLR3A Genevestigator:O14802
GermOnline:ENSG00000148606 Uniprot:O14802
Length = 1390
Score = 491 (177.9 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 436 (158.5 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVQNGPEVHPG 417
Score = 122 (48.0 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 23/34 (67%), Positives = 28/34 (82%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFK 352
LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y K
Sbjct: 594 LWTGKQIFSVILRPSDDNPVRANLRTKGKQYCGK 627
Score = 62 (26.9 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKYGDIVER 452
Score = 39 (18.8 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|A4IF62 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase III subunit
RPC1" species:9913 "Bos taurus" [GO:0045087 "innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0032728 KO:K03018 eggNOG:COG0086 GO:GO:0032549
GeneTree:ENSGT00700000104490 HOVERGEN:HBG004339 EMBL:BC134422
IPI:IPI00701819 RefSeq:NP_001077219.1 UniGene:Bt.58772
ProteinModelPortal:A4IF62 STRING:A4IF62 PRIDE:A4IF62
Ensembl:ENSBTAT00000017638 GeneID:540308 KEGG:bta:540308 CTD:11128
HOGENOM:HOG000222974 InParanoid:A4IF62 OMA:PRRPLIF
OrthoDB:EOG4QVCB4 NextBio:20878554 ArrayExpress:A4IF62
PANTHER:PTHR19376:SF15 Uniprot:A4IF62
Length = 1390
Score = 491 (177.9 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYKKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 436 (158.5 bits), Expect = 2.2e-88, Sum P(2) = 2.2e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANINFLRKLVRNGPEVHPG 417
Score = 121 (47.7 bits), Expect = 2.9e-53, Sum P(3) = 2.9e-53
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
LWTGKQIFS+IL+P+ D PV ANL+TKG+ Y
Sbjct: 594 LWTGKQIFSVILRPSDDNPVRANLRTKGKQY 624
Score = 62 (26.9 bits), Expect = 2.9e-53, Sum P(3) = 2.9e-53
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDIVER 452
Score = 39 (18.8 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>UNIPROTKB|F1S2E6 [details] [associations]
symbol:POLR3A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0032549 "ribonucleoside
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 GO:GO:0032728 KO:K03018 GO:GO:0032549
GeneTree:ENSGT00700000104490 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:CU407090 RefSeq:XP_001929395.1 Ensembl:ENSSSCT00000011305
GeneID:100156229 KEGG:ssc:100156229 Uniprot:F1S2E6
Length = 1390
Score = 490 (177.5 bits), Expect = 3.7e-88, Sum P(2) = 3.7e-88
Identities = 95/127 (74%), Positives = 109/127 (85%)
Query: 113 GLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
GLL+AK LL+ GY KC+ YI A+ +G+LQ QPGC+AEETLEA+ILKELSVIRDHAG AC
Sbjct: 708 GLLKAKYELLNAGYRKCDEYIEALNTGKLQQQPGCTAEETLEALILKELSVIRDHAGSAC 767
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
L+EL SN PL MAL GSKGSFINISQMIACVGQQAI+G RVP+GF+NRSLPHF+K SK
Sbjct: 768 LRELDKSNSPLTMALCGSKGSFINISQMIACVGQQAISGSRVPDGFENRSLPHFEKHSKL 827
Query: 233 PASKGNV 239
PA+KG V
Sbjct: 828 PAAKGFV 834
Score = 435 (158.2 bits), Expect = 3.7e-88, Sum P(2) = 3.7e-88
Identities = 81/113 (71%), Positives = 96/113 (84%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
MI EDW++LQL CAL+INSE SGIPLNM PK +RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 305 MIMEDWDFLQLQCALYINSELSGIPLNMAPKKWTRGFVQRLKGKQGRFRGNLSGKRVDFS 364
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I +V +P HVAKILT+PE+V+ AN L++LV NGP+ HPG
Sbjct: 365 GRTVISPDPNLRIDEVAVPVHVAKILTFPEKVNKANITFLRKLVRNGPEVHPG 417
Score = 123 (48.4 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 24/44 (54%), Positives = 32/44 (72%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFS-IMVKDQF 361
LWTGKQ+FS+IL+P+ D PV ANL+TKG+ Y K + V D +
Sbjct: 594 LWTGKQVFSVILRPSYDNPVRANLRTKGKQYCGKGEDLCVNDSY 637
Score = 62 (26.9 bits), Expect = 2.3e-53, Sum P(3) = 2.3e-53
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
+FL+YGNR K+A ELK +V R
Sbjct: 430 RFLKYGNREKMAQELKFGDIVER 452
Score = 39 (18.8 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 350 TFKFSIMVKDQFRERNTACKI 370
T + + +KD F +R AC+I
Sbjct: 547 TGAYLLTLKDTFFDRAKACQI 567
>FB|FBgn0030687 [details] [associations]
symbol:CG17209 species:7227 "Drosophila melanogaster"
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:AE014298 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 KO:K03018
GO:GO:0032549 GeneTree:ENSGT00700000104490 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:NP_001096987.2 UniGene:Dm.14839
ProteinModelPortal:A8JUY3 SMR:A8JUY3 STRING:A8JUY3
EnsemblMetazoa:FBtr0300811 GeneID:32524 KEGG:dme:Dmel_CG17209
FlyBase:FBgn0030687 OrthoDB:EOG4BNZSM PhylomeDB:A8JUY3
GenomeRNAi:32524 NextBio:778916 Bgee:A8JUY3 Uniprot:A8JUY3
Length = 1383
Score = 440 (159.9 bits), Expect = 2.1e-82, Sum P(2) = 2.1e-82
Identities = 83/127 (65%), Positives = 104/127 (81%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LL+ KE LL+ GY+KC YI +++G LQ QPGC+ EETLE+V+L+ELS IR+ A K C
Sbjct: 707 LLQHKELLLNNGYAKCNEYIELLKAGTLQCQPGCTPEETLESVMLRELSAIREQAAKTCF 766
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
ELHP+N L+MALSGSKGS INISQMIACVGQQAI+GKRVPNGF+NR+LPHF++ S P
Sbjct: 767 AELHPTNSALIMALSGSKGSNINISQMIACVGQQAISGKRVPNGFENRALPHFERHSAIP 826
Query: 234 ASKGNVK 240
A++G V+
Sbjct: 827 AARGFVQ 833
Score = 431 (156.8 bits), Expect = 2.1e-82, Sum P(2) = 2.1e-82
Identities = 80/120 (66%), Positives = 97/120 (80%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I EDW++LQLH AL+ +SE SGIP+NM PK +RG++QRLKGKQGRFR NLSGKRVDF+
Sbjct: 304 LIHEDWDFLQLHVALYFHSEISGIPINMAPKKTTRGIVQRLKGKQGRFRCNLSGKRVDFS 363
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKER 120
RTVISPDPNL I QVG+P VAKILTYPERV+ AN H+++LV NGP HPG ++R
Sbjct: 364 GRTVISPDPNLMINQVGVPVRVAKILTYPERVNPANIRHMRELVRNGPSMHPGANYVQQR 423
Score = 107 (42.7 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 19/32 (59%), Positives = 24/32 (75%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
LWTGKQ+FSL+++PN D V N+ KGR YT
Sbjct: 593 LWTGKQMFSLLMRPNDDSQVRLNMVNKGRNYT 624
Score = 61 (26.5 bits), Expect = 3.6e-51, Sum P(3) = 3.6e-51
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 240 KFLRYGNRLKIASELKSAYLVWR 262
K+L YGNR K+A ELK +V R
Sbjct: 429 KYLAYGNREKVAQELKCGDVVER 451
>WB|WBGene00004411 [details] [associations]
symbol:rpc-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0040035 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K03018 eggNOG:COG0086
HSSP:P04050 GO:GO:0032549 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EMBL:FO080771 PIR:T34157 RefSeq:NP_501127.2
ProteinModelPortal:Q18566 SMR:Q18566 STRING:Q18566 PaxDb:Q18566
EnsemblMetazoa:C42D4.8 GeneID:177491 KEGG:cel:CELE_C42D4.8
UCSC:C42D4.8 CTD:177491 WormBase:C42D4.8 InParanoid:Q18566
NextBio:897062 Uniprot:Q18566
Length = 1400
Score = 427 (155.4 bits), Expect = 1.5e-76, Sum P(2) = 1.5e-76
Identities = 80/126 (63%), Positives = 99/126 (78%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
LLR K +L+ GYSKC YI+ +E G+L+ QPGC+ EETLE++IL+ELS IRDHAG+ CL
Sbjct: 705 LLREKGQLVDNGYSKCSQYIKELEEGKLKAQPGCTEEETLESIILRELSTIRDHAGQVCL 764
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N PL MA+ GSKGSFINISQMIACVGQQAI+G R P+GF+ RSLPHF++ K P
Sbjct: 765 RNLSKYNAPLTMAVCGSKGSFINISQMIACVGQQAISGHRPPDGFEERSLPHFERKKKTP 824
Query: 234 ASKGNV 239
+KG V
Sbjct: 825 EAKGFV 830
Score = 389 (142.0 bits), Expect = 1.5e-76, Sum P(2) = 1.5e-76
Identities = 74/110 (67%), Positives = 87/110 (79%)
Query: 4 EDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E WE LQ+ CAL+INSE SG+P +MQPK R QRLKGKQGRFRGNL GKRVDF+ RT
Sbjct: 304 ETWEHLQIQCALYINSEMSGLPPDMQPKRAMRAFTQRLKGKQGRFRGNLCGKRVDFSGRT 363
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPNL+I QVG+P HVA LT+PE V+ +N E ++QLV+NG D HPG
Sbjct: 364 VISPDPNLRIDQVGVPIHVAMTLTFPEIVNASNIEKMRQLVINGSDVHPG 413
Score = 100 (40.3 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKDQF 361
LWTGKQ+ LI++P++ V+ NL K ++YT + KD +
Sbjct: 591 LWTGKQLIELIIRPDKGSDVSLNLTAKNKSYTGNLELCSKDSY 633
Score = 48 (22.0 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 237 GNVKFLRYGNRLKIASELK 255
GN K L+YG R ++A L+
Sbjct: 423 GNKKLLKYGKRDELAKNLR 441
>DICTYBASE|DDB_G0277199 [details] [associations]
symbol:rpc1 "RNA polymerase III, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0032549
"ribonucleoside binding" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0277199 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000019 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
KO:K03018 eggNOG:COG0086 HSSP:P04050 GO:GO:0032549 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 RefSeq:XP_642724.1 ProteinModelPortal:Q86AQ5
STRING:Q86AQ5 EnsemblProtists:DDB0216293 GeneID:8620917
KEGG:ddi:DDB_G0277199 ProtClustDB:CLSZ2729139 Uniprot:Q86AQ5
Length = 1450
Score = 384 (140.2 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 70/112 (62%), Positives = 87/112 (77%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
I EDW++LQ CA++INS+ G+PL M+P RGL QRLKGK GRFRGNLSGKRVDF+
Sbjct: 299 IMEDWDYLQASCAIYINSDVPGLPLQMKPTKAVRGLSQRLKGKTGRFRGNLSGKRVDFSG 358
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL I +V +P+ +A +TYPERV N E L++ V+NGPD+HPG
Sbjct: 359 RTVISPDPNLNIDEVAVPQLIALTMTYPERVTDYNIERLQKYVINGPDRHPG 410
Score = 352 (129.0 bits), Expect = 5.1e-68, Sum P(2) = 5.1e-68
Identities = 70/134 (52%), Positives = 87/134 (64%)
Query: 108 PDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIR 165
PD P L R K ++ Y KC +++ ESG LQ GCS E+T EA + + LS IR
Sbjct: 689 PDIKPAEDLDRKKREIIETAYKKCAVFLKDYESGSLQLSSGCSMEQTFEAKMNQTLSQIR 748
Query: 166 DHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPH 225
D GK C+ +L N PL+M L GSKGS INI+QMI CVGQQ +NG R+PNGF NR+ PH
Sbjct: 749 DDCGKLCVNDLPNYNSPLIMGLCGSKGSNINIAQMICCVGQQIVNGTRIPNGFTNRTTPH 808
Query: 226 FDKFSKDPASKGNV 239
F F+K+P SKG V
Sbjct: 809 FKHFAKNPKSKGFV 822
Score = 91 (37.1 bits), Expect = 5.5e-44, Sum P(3) = 5.5e-44
Identities = 20/53 (37%), Positives = 28/53 (52%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKFSIMVKD---QFRERNTAC 368
LWTGKQIF ++L+P+ V N +T+ R Y+ + KD FR C
Sbjct: 583 LWTGKQIFEVLLRPSVKSHVLCNFETRSRTYSKNLYMCPKDGYVYFRNSELMC 635
Score = 57 (25.1 bits), Expect = 5.5e-44, Sum P(3) = 5.5e-44
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 237 GNVKFLRYGNRLKIASELKSAYLVWR 262
G K+L++GNR K A+ELK +V R
Sbjct: 419 GVKKWLKFGNREKFAAELKIGDIVER 444
Score = 39 (18.8 bits), Expect = 4.2e-35, Sum P(2) = 4.2e-35
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQ 142
L + + R+ G K +GYI+ + S R Q
Sbjct: 952 LFKNEIRVFFNGNEKTKGYIQELISLRKQ 980
>POMBASE|SPBC651.08c [details] [associations]
symbol:rpc1 "DNA-directed RNA polymerase III complex
large subunit Rpc1 (predicted)" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISO] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032549 "ribonucleoside binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
PomBase:SPBC651.08c GO:GO:0005737 GO:GO:0046872 GO:GO:0003677
EMBL:CU329671 GO:GO:0008270 GenomeReviews:CU329671_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 KO:K03018 OrthoDB:EOG4X3M8C eggNOG:COG0086
GO:GO:0032549 HOGENOM:HOG000222974 OMA:PRRPLIF
PANTHER:PTHR19376:SF15 EMBL:DQ156227 PIR:T40607 RefSeq:NP_595506.1
ProteinModelPortal:O94666 STRING:O94666 EnsemblFungi:SPBC651.08c.1
GeneID:2541094 KEGG:spo:SPBC651.08c NextBio:20802207 Uniprot:O94666
Length = 1405
Score = 368 (134.6 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 69/112 (61%), Positives = 84/112 (75%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
+ E WE++QL A++INSE G+ + P RG QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 300 LMEQWEFMQLSIAMYINSEMPGLRPSDMPSKPIRGFCQRLKGKQGRFRGNLSGKRVDFSG 359
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL+I QV +P +AKILT+PERV NK+HL+ + NGPD HPG
Sbjct: 360 RTVISPDPNLRIDQVAVPYRIAKILTFPERVTTQNKKHLQDCIRNGPDVHPG 411
Score = 345 (126.5 bits), Expect = 1.3e-65, Sum P(2) = 1.3e-65
Identities = 71/133 (53%), Positives = 89/133 (66%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D PG L KE L+++ Y+ + +I G L+ QPG E TLEA I LS +RD
Sbjct: 696 DVQPGKSLSSQKEILVNKAYATSDDFIMQYAKGILECQPGMDQEATLEAKISSTLSKVRD 755
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
G+ C+ EL P+N PL+MA GSKGS IN+SQM+ACVGQQ I+GKRVP+GF +RSLPHF
Sbjct: 756 DVGEICMDELGPANSPLIMATCGSKGSKINVSQMVACVGQQIISGKRVPDGFQDRSLPHF 815
Query: 227 DKFSKDPASKGNV 239
K SK P +KG V
Sbjct: 816 HKNSKHPLAKGFV 828
Score = 92 (37.4 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYT 350
LWTGKQ+F++++KPNR V NL K R+++
Sbjct: 585 LWTGKQVFTVLMKPNRFSKVLVNLDAKTRSFS 616
Score = 59 (25.8 bits), Expect = 1.2e-42, Sum P(3) = 1.2e-42
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 237 GNVKFLRYGNRLKIASELKSAYLVWR 262
G +FLR+GNR +IA +LK +V R
Sbjct: 421 GFKRFLRFGNRNRIADDLKIGDIVER 446
>CGD|CAL0002215 [details] [associations]
symbol:orf19.3103 species:5476 "Candida albicans" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015700
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 CGD:CAL0002215 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AACQ01000086 KO:K03018 eggNOG:COG0086
GO:GO:0032549 PANTHER:PTHR19376:SF15 RefSeq:XP_715412.1
ProteinModelPortal:Q5A0Z3 STRING:Q5A0Z3 GeneID:3642908
KEGG:cal:CaO19.3103 Uniprot:Q5A0Z3
Length = 1448
Score = 341 (125.1 bits), Expect = 5.7e-62, Sum P(2) = 5.7e-62
Identities = 67/127 (52%), Positives = 88/127 (69%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE ++ + Y KC+ I G+L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 718 LKQKKELMVEQAYLKCDQLIDLYNRGKLETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 777
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 778 RELDSLNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGHRVPDGFQDRSLPHFTKNSKTP 837
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 838 QSKGFVR 844
Score = 338 (124.0 bits), Expect = 5.7e-62, Sum P(2) = 5.7e-62
Identities = 67/117 (57%), Positives = 87/117 (74%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQ---PKSKS--RGLIQRLKGKQGRFRGNLSGKR 56
+ E W++LQL A++INS+++ L+ KS R QRLKGKQGRFRGNLSGKR
Sbjct: 309 LMEQWDYLQLSVAMYINSDSANPALSTGGGGAKSSKPIRAFCQRLKGKQGRFRGNLSGKR 368
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VDF+ RTVISPDPNL+I +V +P+ VAK+LTYPE+ NK+ L++LV+NGPD HPG
Sbjct: 369 VDFSGRTVISPDPNLKIDEVAVPDRVAKVLTYPEKCTRYNKKKLQKLVVNGPDIHPG 425
Score = 92 (37.4 bits), Expect = 5.7e-38, Sum P(3) = 5.7e-38
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
LWTGKQ+FSL++KPN+ V NL K + +
Sbjct: 599 LWTGKQVFSLLIKPNKKSNVVINLDAKNKTF 629
Score = 45 (20.9 bits), Expect = 5.7e-38, Sum P(3) = 5.7e-38
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 212 KRVPNGFDNRSLPHFDKFSKDPASKGNVKFLRYGNRLKIASELKSAYLVWR 262
K V NG D ++ +P + LR+G+R+K+A L+ +V R
Sbjct: 414 KLVVNGPDIHPGANYVMKQNEPGKRN----LRFGDRVKLAKTLQIGDVVER 460
>SGD|S000005642 [details] [associations]
symbol:RPO31 "RNA polymerase III largest subunit C160"
species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0032549 "ribonucleoside binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=IDA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 SGD:S000005642
EMBL:BK006948 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:X90518
EMBL:X94335 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005666
GO:GO:0003899 Reactome:REACT_83470 KO:K03018 OrthoDB:EOG4X3M8C
eggNOG:COG0086 GO:GO:0032549 Reactome:REACT_87991 GO:GO:0042797
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222974
PANTHER:PTHR19376:SF15 EMBL:X03129 EMBL:Z75024 PIR:A00694
RefSeq:NP_014759.1 ProteinModelPortal:P04051 SMR:P04051
DIP:DIP-612N IntAct:P04051 MINT:MINT-557787 STRING:P04051
PaxDb:P04051 PeptideAtlas:P04051 EnsemblFungi:YOR116C GeneID:854283
KEGG:sce:YOR116C CYGD:YOR116c OMA:CINELDN NextBio:976257
Genevestigator:P04051 GermOnline:YOR116C Uniprot:P04051
Length = 1460
Score = 340 (124.7 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 68/127 (53%), Positives = 85/127 (66%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
L + KE L+ Y KC+ I G L+TQPGC+ E+TLEA I LS +R+ G C+
Sbjct: 723 LKQKKEELVEIAYHKCDELITLFNKGELETQPGCNEEQTLEAKIGGLLSKVREEVGDVCI 782
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
EL N PL+MA GSKGS +N+SQM+A VGQQ I+G RVP+GF +RSLPHF K SK P
Sbjct: 783 NELDNWNAPLIMATCGSKGSTLNVSQMVAVVGQQIISGNRVPDGFQDRSLPHFPKNSKTP 842
Query: 234 ASKGNVK 240
SKG V+
Sbjct: 843 QSKGFVR 849
Score = 333 (122.3 bits), Expect = 2.5e-61, Sum P(2) = 2.5e-61
Identities = 70/127 (55%), Positives = 91/127 (71%)
Query: 2 IQEDWEWLQLHCALFINSETSG---IP--LNMQPKSKS-RGLIQRLKGKQGRFRGNLSGK 55
+ E W++LQL A++INS++ +P N K K RG QRLKGKQGRFRGNLSGK
Sbjct: 312 MMEHWDYLQLTVAMYINSDSVNPAMLPGSSNGGGKVKPIRGFCQRLKGKQGRFRGNLSGK 371
Query: 56 RVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG-- 113
RVDF+ RTVISPDPNL I +V +P+ VAK+LTYPE+V N+ L++L++NGP+ HPG
Sbjct: 372 RVDFSGRTVISPDPNLSIDEVAVPDRVAKVLTYPEKVTRYNRHKLQELIVNGPNVHPGAN 431
Query: 114 -LLRAKE 119
LL+ E
Sbjct: 432 YLLKRNE 438
Score = 101 (40.6 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAY 349
LWTGKQ+FSL++KPN + PV NL K + +
Sbjct: 603 LWTGKQVFSLLIKPNHNSPVVINLDAKNKVF 633
Score = 48 (22.0 bits), Expect = 1.1e-38, Sum P(3) = 1.1e-38
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 242 LRYGNRLKIASELKSAYLVWR 262
LRYG+R+K+A L+ +V R
Sbjct: 444 LRYGDRMKLAKNLQIGDVVER 464
>ASPGD|ASPL0000047704 [details] [associations]
symbol:AN10316 species:162425 "Emericella nidulans"
[GO:0032549 "ribonucleoside binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 EMBL:BN001307 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0032549
HOGENOM:HOG000222974 OMA:PRRPLIF PANTHER:PTHR19376:SF15
EnsemblFungi:CADANIAT00009238 Uniprot:C8VPJ2
Length = 1445
Score = 332 (121.9 bits), Expect = 4.1e-57, Sum P(2) = 4.1e-57
Identities = 68/113 (60%), Positives = 83/113 (73%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I E W+++QL A++INS+ G LN K RG +QRLKGKQGRFRGNLSGKRVDF+
Sbjct: 321 IMECWDYMQLQIAVYINSDVPG--LNKADLGKPIRGFVQRLKGKQGRFRGNLSGKRVDFS 378
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
RTVISPDPNL++ +V +PE VAK +TYPE V+ NKE L+Q V NG K PG
Sbjct: 379 GRTVISPDPNLRVDEVAVPELVAKNMTYPEVVNRYNKEKLQQCVRNGQKKWPG 431
Score = 301 (111.0 bits), Expect = 4.1e-57, Sum P(2) = 4.1e-57
Identities = 60/134 (44%), Positives = 87/134 (64%)
Query: 109 DKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRD 166
D +P L+++K L+ Y++C+ I ++G L+ PGC +T+E + LS +R
Sbjct: 717 DVYPSDRLVQSKNDLVEAAYAQCDEVIAKYKAGTLEKYPGCDELQTMENQLSGILSKVRQ 776
Query: 167 HAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHF 226
AG C+ +L N PL+MA SGSKGS IN+SQM+A VGQQ I G+RV +GF +R+LPHF
Sbjct: 777 QAGDECIAQLSKYNSPLIMATSGSKGSSINVSQMVALVGQQIIGGQRVQDGFQDRTLPHF 836
Query: 227 DKFSKDPASKGNVK 240
K ++ P SKG V+
Sbjct: 837 PKNARQPPSKGFVR 850
Score = 90 (36.7 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 14/24 (58%), Positives = 21/24 (87%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANL 342
LWTGKQ+F+++++PN+D PV NL
Sbjct: 605 LWTGKQVFNILMRPNKDDPVLVNL 628
Score = 43 (20.2 bits), Expect = 6.4e-37, Sum P(3) = 6.4e-37
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 236 KGN-VK-FLRYGNRLKIASELKSAYLVWR 262
KGN +K L+YGN IA +L+ +V R
Sbjct: 438 KGNPLKTMLKYGNLKFIADQLQEGDIVER 466
>GENEDB_PFALCIPARUM|PF13_0150 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase 3
largest subunit" species:5833 "Plasmodium falciparum" [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 305 (112.4 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
Identities = 66/142 (46%), Positives = 86/142 (60%)
Query: 101 KQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVIL 158
K + + D P L K+ LL +GY K I ++Q QPGC+ EETLE +
Sbjct: 805 KGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVK 864
Query: 159 KELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGF 218
L +R+ AGK C Q LH N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF
Sbjct: 865 SILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGF 924
Query: 219 DNRSLPHFDKFSKDPASKGNVK 240
NR+LPHF KD S+G V+
Sbjct: 925 INRTLPHFHFHCKDSESRGFVQ 946
Score = 283 (104.7 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N + LK L+ NG +K PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG 415
Score = 81 (33.6 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
LWTGKQ+ S+++KPN+ N + + R Y+ KF
Sbjct: 703 LWTGKQLISVLIKPNKKENTIINFEIQEREYSNKF 737
Score = 40 (19.1 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
F N+ + I + + I GK +P G L + KF K+
Sbjct: 2301 FKNVDE-INNISESIIVGKNIPIGTGAFQLLYDYKFEKE 2338
>UNIPROTKB|Q8IE49 [details] [associations]
symbol:PF13_0150 "DNA-directed RNA polymerase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=ISS] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISS]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015700 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006383 EMBL:AL844509
GO:GO:0005666 GO:GO:0003899 KO:K03018 GO:GO:0032549
HOGENOM:HOG000222974 PANTHER:PTHR19376:SF15 RefSeq:XP_001350009.1
ProteinModelPortal:Q8IE49 EnsemblProtists:PF13_0150:mRNA
GeneID:814120 KEGG:pfa:PF13_0150 EuPathDB:PlasmoDB:PF3D7_1329000
Uniprot:Q8IE49
Length = 2356
Score = 305 (112.4 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
Identities = 66/142 (46%), Positives = 86/142 (60%)
Query: 101 KQLVLNGPDKHPG--LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVIL 158
K + + D P L K+ LL +GY K I ++Q QPGC+ EETLE +
Sbjct: 805 KGMTIGIDDVRPSQTLTEKKKDLLLKGYEKVNNEIILYNEKKMQIQPGCTLEETLEIKVK 864
Query: 159 KELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGF 218
L +R+ AGK C Q LH N PL+M SG+KG+ INI+QMIACVGQQ + G+R+ NGF
Sbjct: 865 SILDDLRNDAGKTCNQYLHYLNKPLIMFNSGAKGALINIAQMIACVGQQNVAGQRIQNGF 924
Query: 219 DNRSLPHFDKFSKDPASKGNVK 240
NR+LPHF KD S+G V+
Sbjct: 925 INRTLPHFHFHCKDSESRGFVQ 946
Score = 283 (104.7 bits), Expect = 8.4e-52, Sum P(2) = 8.4e-52
Identities = 63/110 (57%), Positives = 78/110 (70%)
Query: 7 EWLQLHCALFINSETSGIP--LNMQPKSK-SRGLIQRLKGKQGRFRGNLSGKRVDFTSRT 63
E+LQL FINS++ + L Q SK RG+ QRLKGK+GRFR NLSGKRVDF+SRT
Sbjct: 306 EFLQLQITRFINSDSPAVSQLLATQNISKPGRGICQRLKGKEGRFRCNLSGKRVDFSSRT 365
Query: 64 VISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
VISPDPN+ I +V IP+ +A LTYPE V+ N + LK L+ NG +K PG
Sbjct: 366 VISPDPNISIDEVVIPKIIAMRLTYPETVNKYNIDKLKMLIKNGCNKWPG 415
Score = 81 (33.6 bits), Expect = 4.3e-27, Sum P(2) = 4.3e-27
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 319 LWTGKQIFSLILKPNRDCPVNANLKTKGRAYTFKF 353
LWTGKQ+ S+++KPN+ N + + R Y+ KF
Sbjct: 703 LWTGKQLISVLIKPNKKENTIINFEIQEREYSNKF 737
Score = 40 (19.1 bits), Expect = 8.4e-23, Sum P(2) = 8.4e-23
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 194 FINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
F N+ + I + + I GK +P G L + KF K+
Sbjct: 2301 FKNVDE-INNISESIIVGKNIPIGTGAFQLLYDYKFEKE 2338
>DICTYBASE|DDB_G0279193 [details] [associations]
symbol:rpb1 "RNA polymerase II core subunit"
species:44689 "Dictyostelium discoideum" [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 dictyBase:DDB_G0279193
GO:GO:0006355 GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AAFI02000030 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
OMA:KVLPWST EMBL:S52651 PIR:A56823 RefSeq:XP_641735.1 STRING:P35084
PRIDE:P35084 EnsemblProtists:DDB0215406 GeneID:8621932
KEGG:ddi:DDB_G0279193 KO:K03006 ProtClustDB:CLSZ2428993
Uniprot:P35084
Length = 1727
Score = 291 (107.5 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 56/114 (49%), Positives = 79/114 (69%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E ++LQ H A ++++E G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 293 IIAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDF 352
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I QVG+P +A LTYPE V N + +++L+ NGP +HPG
Sbjct: 353 SARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHPG 406
Score = 241 (89.9 bits), Expect = 3.1e-46, Sum P(2) = 3.1e-46
Identities = 56/130 (43%), Positives = 77/130 (59%)
Query: 117 AKERL-LSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE 175
AK L +S ++ + I ++ + + QPG S ET E + + L+ RD AG +
Sbjct: 686 AKVTLTISSAKNQVKELIIKAQNKQFECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDS 745
Query: 176 LHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPAS 235
L N M +GSKGSFINISQM+ACVGQQ + GKR+P GF +R+LPHF K P S
Sbjct: 746 LSEDNNLKAMVTAGSKGSFINISQMMACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPES 805
Query: 236 KGNVK--FLR 243
+G V+ +LR
Sbjct: 806 RGFVENSYLR 815
Score = 58 (25.5 bits), Expect = 4.8e-27, Sum P(2) = 4.8e-27
Identities = 10/12 (83%), Positives = 12/12 (100%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQ+FSLI+
Sbjct: 576 LWTGKQLFSLII 587
Score = 43 (20.2 bits), Expect = 1.8e-25, Sum P(2) = 1.8e-25
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 147 CSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQ 206
CSA +T VI++ ++ AG C + L +NG ++ + G + ++ Q
Sbjct: 607 CSAGDT--RVIIERGELL---AGILCKRSLGAANGSIIHVVMNEHGH--DTCRLFIDQTQ 659
Query: 207 QAINGKRVPNGF 218
+N + GF
Sbjct: 660 TVVNHWLINRGF 671
>POMBASE|SPBC28F2.12 [details] [associations]
symbol:rpb1 "RNA polymerase II large subunit Rpb1"
species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IC] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IC] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 PomBase:SPBC28F2.12 GO:GO:0005829
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 PDB:3H0G PDBsum:3H0G
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X56564 PIR:S26849
RefSeq:NP_595673.1 ProteinModelPortal:P36594 IntAct:P36594
MINT:MINT-1214221 STRING:P36594 EnsemblFungi:SPBC28F2.12.1
GeneID:2540292 KEGG:spo:SPBC28F2.12 OrthoDB:EOG4J14H5
EvolutionaryTrace:P36594 NextBio:20801422 Uniprot:P36594
Length = 1752
Score = 283 (104.7 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 55/114 (48%), Positives = 79/114 (69%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ E + LQ H A ++++E +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 294 IVSEYEQLLQFHVATYMDNEIAGQPQALQKSGRPLKSIRARLKGKEGRLRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + ++G+P +AK LTYPE V N L++LV NGPD+HPG
Sbjct: 354 SARTVITGDPNLSLDELGVPRSIAKTLTYPETVTPYNIYQLQELVRNGPDEHPG 407
Score = 251 (93.4 bits), Expect = 3.1e-45, Sum P(2) = 3.1e-45
Identities = 54/126 (42%), Positives = 76/126 (60%)
Query: 120 RLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPS 179
R + E + I+ + RL+ +PG + E+ EA + + L+ RD+AG++ L S
Sbjct: 687 RTVKEARRQVAECIQDAQHNRLKPEPGMTLRESFEAKVSRILNQARDNAGRSAEHSLKDS 746
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV 239
N M +GSKGSFINISQM ACVGQQ + GKR+P GF R+LPHF K P S+G +
Sbjct: 747 NNVKQMVAAGSKGSFINISQMSACVGQQIVEGKRIPFGFKYRTLPHFPKDDDSPESRGFI 806
Query: 240 K--FLR 243
+ +LR
Sbjct: 807 ENSYLR 812
Score = 54 (24.1 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 10/12 (83%), Positives = 11/12 (91%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQI SLI+
Sbjct: 577 LWTGKQILSLII 588
>FB|FBgn0003277 [details] [associations]
symbol:RpII215 "RNA polymerase II 215kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0005703 "polytene
chromosome puff" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISS;NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0007095
"mitotic G2 DNA damage checkpoint" evidence=IGI] [GO:0005700
"polytene chromosome" evidence=IDA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
PROSITE:PS00115 SMART:SM00663 GO:GO:0007095 GO:GO:0046872
GO:GO:0003677 EMBL:AE014298 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0005703 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 GeneTree:ENSGT00700000104490 OMA:KVLPWST KO:K03006
EMBL:M27431 EMBL:M14203 EMBL:M11798 EMBL:M19537 PIR:S04457
RefSeq:NP_511124.1 UniGene:Dm.2925 ProteinModelPortal:P04052
SMR:P04052 DIP:DIP-22282N IntAct:P04052 MINT:MINT-970158
STRING:P04052 PaxDb:P04052 EnsemblMetazoa:FBtr0073542 GeneID:32100
KEGG:dme:Dmel_CG1554 CTD:32100 FlyBase:FBgn0003277
InParanoid:P04052 OrthoDB:EOG4QRFJV PhylomeDB:P04052
GenomeRNAi:32100 NextBio:776837 Bgee:P04052 GermOnline:CG1554
Uniprot:P04052
Length = 1887
Score = 279 (103.3 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 56/114 (49%), Positives = 80/114 (70%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQ-RLKGKQGRFRGNLSGKRVDF 59
+IQE+ + LQ H A ++++ G+P MQ K I+ RLKGK+GR RGNL GKRVDF
Sbjct: 294 VIQENIKMLQFHVATLVDNDMPGMPRAMQKSGKPLKAIKARLKGKEGRIRGNLMGKRVDF 353
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL+I QVG+P +A+ LT+PE V N + +++LV G ++PG
Sbjct: 354 SARTVITPDPNLRIDQVGVPRSIAQNLTFPELVTPFNIDRMQELVRRGNSQYPG 407
Score = 212 (79.7 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 47/108 (43%), Positives = 64/108 (59%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I+ + L+ PG + +T E + + L+ RD G + + L N M +SGSKG
Sbjct: 709 IQKAHNMELEPTPGNTLRQTFENKVNRILNDARDKTGGSAKKSLTEYNNLKAMVVSGSKG 768
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IACVGQQ + GKR+P GF R+LPHF K P S+G V+
Sbjct: 769 SNINISQVIACVGQQNVEGKRIPYGFRKRTLPHFIKDDYGPESRGFVE 816
Score = 63 (27.2 bits), Expect = 4.5e-28, Sum P(4) = 4.5e-28
Identities = 12/15 (80%), Positives = 13/15 (86%)
Query: 319 LWTGKQIFSLILKPN 333
LWTGKQIFSLI+ N
Sbjct: 577 LWTGKQIFSLIIPGN 591
Score = 54 (24.1 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 11/18 (61%), Positives = 12/18 (66%)
Query: 389 PGNKYSPSYSNRTGTVPS 406
PGN YSPS SN + PS
Sbjct: 1667 PGNAYSPSSSNYSPNSPS 1684
Score = 47 (21.6 bits), Expect = 1.1e-42, Sum P(4) = 1.1e-42
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 386 QSGPGNKYSPSYSNRTGTVP 405
Q P N+YSP+ S + T P
Sbjct: 1804 QHSPSNQYSPTGSTYSATSP 1823
Score = 46 (21.3 bits), Expect = 2.1e-43, Sum P(4) = 2.1e-43
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D + +N C++ H T V + T I P
Sbjct: 1120 INISKKPKAPSLTVFLTGGAARDAEKAKNVLCRLEHTTLRKVTANTAIYYDPDP 1173
Score = 38 (18.4 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 13/31 (41%), Positives = 14/31 (45%)
Query: 379 SPTEIQQQ-SGPGN---KYSPSYSNRTGTVP 405
SPT S PG YSPS N + T P
Sbjct: 1580 SPTSPNYTASSPGGASPNYSPSSPNYSPTSP 1610
>ASPGD|ASPL0000054301 [details] [associations]
symbol:AN0809 species:162425 "Emericella nidulans"
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 EMBL:BN001308 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACD01000013 GO:GO:0003899 eggNOG:COG0086 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
RefSeq:XP_658413.1 STRING:Q5BF71 EnsemblFungi:CADANIAT00001852
GeneID:2876587 KEGG:ani:AN0809.2 Uniprot:Q5BF71
Length = 1745
Score = 282 (104.3 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 55/114 (48%), Positives = 82/114 (71%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+++E LQ H A +++++ +G P MQ ++ + + RLKGK+GR R NL GKRVDF
Sbjct: 302 VVREFESLLQYHIATYMDNDIAGQPKAMQKSNRPVKAIRSRLKGKEGRLRQNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL + +VG+P+ +A+ LTYPE V N E L+QLV+NGP++HPG
Sbjct: 362 SARTVITGDPNLSLDEVGVPKSIARTLTYPEVVTPYNIEKLQQLVMNGPNEHPG 415
Score = 220 (82.5 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 52/131 (39%), Positives = 72/131 (54%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
++A E + + + E +L+ PG + ET E+ + L+ RD AG A +
Sbjct: 696 IQAIEECVRKRKLEVEEITATATQNKLEPLPGMNVRETFESKVSVALNTARDEAGTATEK 755
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N + M+ SGSKGS INISQM A VGQQ + GKR+ GF R+LPHF K P
Sbjct: 756 SLKDLNNAVQMSRSGSKGSIINISQMTAVVGQQMVEGKRIAFGFKYRTLPHFTKDDYSPE 815
Query: 235 SKGNVK--FLR 243
S+G V+ +LR
Sbjct: 816 SRGFVENSYLR 826
Score = 45 (20.9 bits), Expect = 2.4e-14, Sum P(3) = 2.4e-14
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 50 GNLSGKRV--DFTSRT--VISPDPNLQ-IYQVGIPEHVAK 84
G+ SG+R D T + ++ + N+Q Q G PEHV +
Sbjct: 265 GSTSGQRGEDDLTYKLAEIVRANQNVQRCEQEGAPEHVVR 304
Score = 42 (19.8 bits), Expect = 4.1e-24, Sum P(3) = 4.1e-24
Identities = 6/10 (60%), Positives = 9/10 (90%)
Query: 320 WTGKQIFSLI 329
WTGKQ+ S++
Sbjct: 586 WTGKQMISMV 595
Score = 41 (19.5 bits), Expect = 1.4e-42, Sum P(3) = 1.4e-42
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 374 TFCVDSPTEIQQQSGPGNKYSPSYS 398
T+ SP + PG SP YS
Sbjct: 1708 TYSPTSPNFAGSPTSPGGPTSPGYS 1732
>ZFIN|ZDB-GENE-041008-78 [details] [associations]
symbol:polr2a "polymerase (RNA) II (DNA directed)
polypeptide A" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 ZFIN:ZDB-GENE-041008-78 GO:GO:0003677
GO:GO:0006366 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GO:GO:0005665 GeneTree:ENSGT00700000104490 EMBL:AL929346
IPI:IPI00608319 Ensembl:ENSDART00000077495 Bgee:F1Q9K4
Uniprot:F1Q9K4
Length = 1965
Score = 284 (105.0 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 57/114 (50%), Positives = 79/114 (69%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 299 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSIKQRLKGKEGRVRGNLMGKRVDF 358
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNLQI QVG+P +A +T+PE V N + L++LV G ++PG
Sbjct: 359 SARTVITPDPNLQIDQVGVPRSIAANMTFPEIVTPFNIDRLQELVRRGNSQYPG 412
Score = 202 (76.2 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M ++GSKG
Sbjct: 714 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVAGSKG 773
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 774 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 821
Score = 60 (26.2 bits), Expect = 3.7e-27, Sum P(3) = 3.7e-27
Identities = 11/12 (91%), Positives = 12/12 (100%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQIFSLI+
Sbjct: 582 LWTGKQIFSLII 593
Score = 46 (21.3 bits), Expect = 6.8e-42, Sum P(3) = 6.8e-42
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGPGN 391
+N + + K + T F +D R ++ C++ H T V + T I P N
Sbjct: 1125 INISKRPKTPSLTVFLLGQAARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQN 1180
Score = 41 (19.5 bits), Expect = 2.2e-41, Sum P(3) = 2.2e-41
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T PS
Sbjct: 1732 SPTS-PSYSPTSPSYSPTSPNYTPTSPS 1758
Score = 40 (19.1 bits), Expect = 5.1e-12, Sum P(3) = 5.1e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 210 KILLSPERVHEIFK 223
Score = 39 (18.8 bits), Expect = 3.6e-41, Sum P(3) = 3.6e-41
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1544 SPSAASDASGFSPGYSPAWSPTPGS 1568
Score = 39 (18.8 bits), Expect = 3.6e-41, Sum P(3) = 3.6e-41
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 379 SPTE-IQQQSGPGNKYSPSYSNRTGTVPS 406
SPT + PG Y+P + T PS
Sbjct: 1590 SPTSPAYEPRSPGGGYTPQSPGYSPTSPS 1618
Score = 38 (18.4 bits), Expect = 4.6e-41, Sum P(3) = 4.6e-41
Identities = 11/28 (39%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T P+
Sbjct: 1760 SPTS-PSYSPTSPSYSPTSPNYTPTSPN 1786
Score = 37 (18.1 bits), Expect = 1.0e-11, Sum P(3) = 1.0e-11
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 64 VISPDP---NLQIYQVGIPEHVAKILTY 88
++ P P QI+ + IP H+ I T+
Sbjct: 576 ILKPRPLWTGKQIFSLIIPGHINAIRTH 603
>UNIPROTKB|G4MT89 [details] [associations]
symbol:MGG_04652 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0006366 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0043581 EMBL:CM001232 GO:GO:0003899
GO:GO:0005665 KO:K03006 RefSeq:XP_003713642.1
EnsemblFungi:MGG_04652T0 GeneID:2678092 KEGG:mgr:MGG_04652
Uniprot:G4MT89
Length = 1757
Score = 276 (102.2 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 51/108 (47%), Positives = 77/108 (71%)
Query: 7 EWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
E LQ H A +++++ + IP ++Q + + + RLKGK+GR RGNL GKRVDF++RTVI
Sbjct: 308 ELLQYHVATYMDNDIASIPRSLQKSGRPIKSIRARLKGKEGRLRGNLMGKRVDFSARTVI 367
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+ D N+ +++VG+P +A+ LTYPE V N + L Q V+NGP++HPG
Sbjct: 368 TGDANISLHEVGVPRSIARTLTYPETVTPHNIDRLHQYVVNGPNEHPG 415
Score = 225 (84.3 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 49/108 (45%), Positives = 66/108 (61%)
Query: 138 SGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINI 197
+ RL+ PG + ET E+ + K L+ R+ AG + L N + M+ SGSKGS INI
Sbjct: 710 TNRLEALPGMNIRETFESKVSKALNTAREKAGTTTEKSLKDINNAVTMSRSGSKGSSINI 769
Query: 198 SQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
SQM A VGQQ + GKR+P GF R+LPHF K P ++G V+ +LR
Sbjct: 770 SQMTALVGQQIVEGKRIPFGFKYRTLPHFTKDDFSPEARGFVENSYLR 817
Score = 47 (21.6 bits), Expect = 1.4e-22, Sum P(3) = 1.4e-22
Identities = 7/11 (63%), Positives = 10/11 (90%)
Query: 320 WTGKQIFSLIL 330
WTGKQI S+++
Sbjct: 586 WTGKQIISMVI 596
Score = 40 (19.1 bits), Expect = 7.5e-22, Sum P(3) = 7.5e-22
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 147 CSAEET----LEAVILKELSVIRDHAGKACLQELHP 178
CS EET LEA + EL R + L +L P
Sbjct: 1422 CSFEETVEILLEAAAIGELDDCRGISENVMLGQLAP 1457
Score = 40 (19.1 bits), Expect = 3.1e-14, Sum P(3) = 3.1e-14
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 99 HLKQLVLNGPDKHPGLLRAKERLLSEGYSKC 129
H + L P HPG + +++L +C
Sbjct: 82 HFGHIELAKPVYHPGFINKTKKILEMVCHQC 112
Score = 39 (18.8 bits), Expect = 5.1e-41, Sum P(3) = 5.1e-41
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 379 SPTEIQQQS-GPGNKYSPSYSNRT 401
SP + S GP + SPS+S R+
Sbjct: 1713 SPAQASPTSPGPYSPTSPSFSPRS 1736
Score = 39 (18.8 bits), Expect = 3.9e-14, Sum P(3) = 3.9e-14
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 77 GIPEHVAKILTYPERVHHANKEHLKQ 102
G+ + V L PE+ HH K H+ +
Sbjct: 203 GMKKEVKDKLITPEQAHHILK-HIPE 227
Score = 37 (18.1 bits), Expect = 8.2e-41, Sum P(3) = 8.2e-41
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 379 SPT-EIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT + +G N YSP+ + G P+
Sbjct: 1637 SPTYQPGSPTGGDNHYSPTSPAQFGASPT 1665
>UNIPROTKB|J9NW09 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 EMBL:AAEX03003616 EMBL:AAEX03003617
Ensembl:ENSCAFT00000050029 Uniprot:J9NW09
Length = 1789
Score = 273 (101.2 bits), Expect = 6.3e-39, Sum P(4) = 6.3e-39
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 6.3e-39, Sum P(4) = 6.3e-39
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 7.3e-25, Sum P(4) = 7.3e-25
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 6.3e-39, Sum P(4) = 6.3e-39
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 44 (20.5 bits), Expect = 1.8e-38, Sum P(3) = 1.8e-38
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSPS N T T PS
Sbjct: 1735 SPTS-PSYSPTSPNYSPSRPNYTPTSPS 1761
Score = 40 (19.1 bits), Expect = 6.3e-12, Sum P(4) = 6.3e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 6.1e-38, Sum P(3) = 6.1e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGS 1571
Score = 37 (18.1 bits), Expect = 6.3e-39, Sum P(4) = 6.3e-39
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1585 PGGAMSPSYS 1594
>UNIPROTKB|F1PGS0 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0003677 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:AAEX03003616
EMBL:AAEX03003617 Ensembl:ENSCAFT00000026237 Uniprot:F1PGS0
Length = 1969
Score = 273 (101.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 1.1e-24, Sum P(4) = 1.1e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 44 (20.5 bits), Expect = 2.6e-38, Sum P(3) = 2.6e-38
Identities = 13/28 (46%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSPS N T T PS
Sbjct: 1735 SPTS-PSYSPTSPNYSPSRPNYTPTSPS 1761
Score = 40 (19.1 bits), Expect = 9.6e-12, Sum P(4) = 9.6e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(3) = 8.7e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGS 1571
Score = 37 (18.1 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1585 PGGAMSPSYS 1594
>UNIPROTKB|G3MZY8 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA] [GO:0004672 "protein kinase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 OMA:KVLPWST EMBL:DAAA02048777
EMBL:DAAA02048778 EMBL:DAAA02048779 EMBL:DAAA02048780
EMBL:DAAA02048781 Ensembl:ENSBTAT00000064788 Uniprot:G3MZY8
Length = 1970
Score = 273 (101.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 41 (19.5 bits), Expect = 5.4e-38, Sum P(3) = 5.4e-38
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T PS
Sbjct: 1736 SPTS-PSYSPTSPNYSPTSPNYTPTSPS 1762
Score = 40 (19.1 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(3) = 8.7e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1548 SPSAASDASGFSPGYSPAWSPTPGS 1572
Score = 37 (18.1 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1586 PGGAMSPSYS 1595
>UNIPROTKB|P24928 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase II subunit RPB1"
species:9606 "Homo sapiens" [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003968 "RNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003677 "DNA binding" evidence=NAS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] [GO:0006366
"transcription from RNA polymerase II promoter"
evidence=IDA;NAS;TAS] [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IDA] [GO:0004672 "protein kinase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0031625 "ubiquitin protein ligase binding" evidence=IPI]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 Reactome:REACT_116125
EMBL:CH471108 GO:GO:0016032 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0006468 GO:GO:0006368
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0006367 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0006370 GO:GO:0050434 GO:GO:0006283
Reactome:REACT_1892 EMBL:AC113189 GO:GO:0003899 PDB:2GHQ PDB:2GHT
PDBsum:2GHQ PDBsum:2GHT eggNOG:COG0086 GO:GO:0003968 GO:GO:0005665
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 EMBL:X63564 EMBL:X74874
EMBL:X74873 EMBL:X74872 EMBL:X74871 EMBL:X74870 EMBL:BC137231
IPI:IPI00031627 PIR:I38186 PIR:S21054 RefSeq:NP_000928.1
UniGene:Hs.270017 PDB:2LTO PDBsum:2LTO ProteinModelPortal:P24928
SMR:P24928 DIP:DIP-29011N IntAct:P24928 MINT:MINT-156582
STRING:P24928 PhosphoSite:P24928 DMDM:281185484 PaxDb:P24928
PRIDE:P24928 Ensembl:ENST00000322644 GeneID:5430 KEGG:hsa:5430
UCSC:uc002ghf.4 CTD:5430 GeneCards:GC17P007387 H-InvDB:HIX0173727
HGNC:HGNC:9187 HPA:CAB012226 HPA:CAB016388 HPA:CAB022311
HPA:HPA021563 MIM:180660 neXtProt:NX_P24928 PharmGKB:PA33507
HOVERGEN:HBG004339 InParanoid:P24928 OrthoDB:EOG4JWVCM
BindingDB:P24928 ChEMBL:CHEMBL1641353 ChiTaRS:POLR2A
EvolutionaryTrace:P24928 GenomeRNAi:5430 NextBio:21009
ArrayExpress:P24928 Bgee:P24928 CleanEx:HS_POLR2A
Genevestigator:P24928 GermOnline:ENSG00000181222 Uniprot:P24928
Length = 1970
Score = 273 (101.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 41 (19.5 bits), Expect = 5.4e-38, Sum P(3) = 5.4e-38
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T PS
Sbjct: 1735 SPTS-PSYSPTSPNYSPTSPNYTPTSPS 1761
Score = 40 (19.1 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(3) = 8.7e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGS 1571
Score = 37 (18.1 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1585 PGGAMSPSYS 1594
>MGI|MGI:98086 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide
A" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006468 "protein phosphorylation"
evidence=ISO] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 MGI:MGI:98086
GO:GO:0046872 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
EMBL:AL603707 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 GeneTree:ENSGT00700000104490
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 CTD:5430
HOVERGEN:HBG004339 OrthoDB:EOG4JWVCM ChiTaRS:POLR2A EMBL:M12130
EMBL:M14101 IPI:IPI00136207 PIR:A28490 RefSeq:NP_033115.1
UniGene:Mm.16533 DisProt:DP00181 ProteinModelPortal:P08775
SMR:P08775 DIP:DIP-46369N IntAct:P08775 STRING:P08775
PhosphoSite:P08775 PaxDb:P08775 PRIDE:P08775
Ensembl:ENSMUST00000058470 Ensembl:ENSMUST00000071213 GeneID:20020
KEGG:mmu:20020 UCSC:uc007jrj.1 InParanoid:Q5F298 NextBio:297535
Bgee:P08775 CleanEx:MM_POLR2A Genevestigator:P08775
GermOnline:ENSMUSG00000005198 Uniprot:P08775
Length = 1970
Score = 273 (101.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 41 (19.5 bits), Expect = 5.4e-38, Sum P(3) = 5.4e-38
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T PS
Sbjct: 1735 SPTS-PSYSPTSPNYSPTSPNYTPTSPS 1761
Score = 40 (19.1 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(3) = 8.7e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGS 1571
Score = 37 (18.1 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1585 PGGAMSPSYS 1594
>RGD|1587326 [details] [associations]
symbol:Polr2a "polymerase (RNA) II (DNA directed) polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0003677 "DNA binding" evidence=IEA;ISO]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA;ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=IEA;ISO] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 RGD:1587326 GO:GO:0003677 GO:GO:0004672 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0005665
GeneTree:ENSGT00700000104490 KO:K03006 CTD:5430 OrthoDB:EOG4JWVCM
IPI:IPI00952328 RefSeq:XP_001079162.1 RefSeq:XP_343923.3
UniGene:Rn.163136 Ensembl:ENSRNOT00000068013 GeneID:363633
KEGG:rno:363633 UCSC:RGD:1587326 NextBio:683839 ArrayExpress:D4A5A6
Uniprot:D4A5A6
Length = 1970
Score = 273 (101.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 1.2e-24, Sum P(4) = 1.2e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 45 (20.9 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 338 VNANLKTKGRAYT-FKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGP 389
+N + K K + T F +D R ++ C++ H T V + T I P
Sbjct: 1128 INISKKPKTPSLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNP 1181
Score = 41 (19.5 bits), Expect = 5.4e-38, Sum P(3) = 5.4e-38
Identities = 12/28 (42%), Positives = 13/28 (46%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGTVPS 406
SPT S YSP+ N T T PS
Sbjct: 1735 SPTS-PSYSPTSPNYSPTSPNYTPTSPS 1761
Score = 40 (19.1 bits), Expect = 9.7e-12, Sum P(4) = 9.7e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
Score = 39 (18.8 bits), Expect = 8.7e-38, Sum P(3) = 8.7e-38
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 379 SPTEIQQQSGPGNKYSPSYSNRTGT 403
SP+ SG YSP++S G+
Sbjct: 1547 SPSAASDASGFSPGYSPAWSPTPGS 1571
Score = 37 (18.1 bits), Expect = 1.0e-38, Sum P(4) = 1.0e-38
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 389 PGNKYSPSYS 398
PG SPSYS
Sbjct: 1585 PGGAMSPSYS 1594
>UNIPROTKB|I3LJR4 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04992
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
GeneTree:ENSGT00700000104490 EMBL:FP565284
Ensembl:ENSSSCT00000029425 Uniprot:I3LJR4
Length = 1010
Score = 273 (101.2 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
Score = 202 (76.2 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 45/108 (41%), Positives = 63/108 (58%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
I + L+ PG + +T E + + L+ RD G + + L N M +SG+KG
Sbjct: 717 IEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKG 776
Query: 193 SFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
S INISQ+IA VGQQ + GKR+P GF +R+LPHF K P S+G V+
Sbjct: 777 SKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVE 824
Score = 65 (27.9 bits), Expect = 4.3e-24, Sum P(2) = 4.3e-24
Identities = 12/18 (66%), Positives = 15/18 (83%)
Query: 319 LWTGKQIFSLILKPNRDC 336
LWTGKQIFSLI+ + +C
Sbjct: 585 LWTGKQIFSLIIPGHINC 602
Score = 40 (19.1 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 84 KILTYPERVHHANK 97
KIL PERVH K
Sbjct: 213 KILLSPERVHEIFK 226
>WB|WBGene00000123 [details] [associations]
symbol:ama-1 species:6239 "Caenorhabditis elegans"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005665 "DNA-directed RNA polymerase II, core complex"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA;IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0010458 "exit from mitosis" evidence=IMP]
[GO:0008356 "asymmetric cell division" evidence=IMP] [GO:0032502
"developmental process" evidence=IMP] [GO:0006479 "protein
methylation" evidence=IMP] [GO:0007369 "gastrulation" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001055 "RNA polymerase II
activity" evidence=IMP] [GO:0042789 "mRNA transcription from RNA
polymerase II promoter" evidence=IMP] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 GO:GO:0005634
GO:GO:0009792 GO:GO:0040010 GO:GO:0007052 GO:GO:0010458
GO:GO:0046872 GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006479 GO:GO:0008356 GO:GO:0007369
GO:GO:0042789 EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665
EMBL:M29235 PIR:A34092 PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356
STRING:P16356 PaxDb:P16356 EnsemblMetazoa:F36A4.7.1
EnsemblMetazoa:F36A4.7.2 GeneID:177190 KEGG:cel:CELE_F36A4.7
UCSC:F36A4.7 CTD:247749 WormBase:F36A4.7
GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975 InParanoid:P16356
OMA:KVLPWST NextBio:895720 GO:GO:0001055 Uniprot:P16356
Length = 1856
Score = 245 (91.3 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 51/114 (44%), Positives = 74/114 (64%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ +D LQ H A +++ G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 296 VLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I VG+P +A+ LT+PE V N + L++LV G ++PG
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG 409
Score = 214 (80.4 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 47/100 (47%), Positives = 62/100 (62%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + +T E + + L+ RD G + + L N M +SGSKGS INISQ+
Sbjct: 719 LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQV 778
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
IACVGQQ + GKR+P GF +R+LPHF K P SKG V+
Sbjct: 779 IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVE 818
Score = 62 (26.9 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 319 LWTGKQIFSLILKPN 333
LWTGKQ+FSLI+ N
Sbjct: 579 LWTGKQVFSLIIPGN 593
Score = 48 (22.0 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 338 VNANLKTKGRAYTFKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGPGN 391
V+ LKT F KD + ++ CK+ H T V T I P N
Sbjct: 1124 VSKTLKTPSLT-VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 1177
Score = 44 (20.5 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 379 SPTEIQQQSGPGN-----KYSPSYSNRTGTVPS 406
SPT +SG G KYSPS + T PS
Sbjct: 1708 SPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS 1740
>UNIPROTKB|P16356 [details] [associations]
symbol:ama-1 "DNA-directed RNA polymerase II subunit RPB1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0007052 GO:GO:0010458 GO:GO:0046872
GO:GO:0003677 GO:GO:0000003 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0006479 GO:GO:0008356 GO:GO:0007369 GO:GO:0042789
EMBL:FO081153 eggNOG:COG0086 GO:GO:0005665 EMBL:M29235 PIR:A34092
PIR:T29959 RefSeq:NP_500523.4 IntAct:P16356 STRING:P16356
PaxDb:P16356 EnsemblMetazoa:F36A4.7.1 EnsemblMetazoa:F36A4.7.2
GeneID:177190 KEGG:cel:CELE_F36A4.7 UCSC:F36A4.7 CTD:247749
WormBase:F36A4.7 GeneTree:ENSGT00700000104490 HOGENOM:HOG000222975
InParanoid:P16356 OMA:KVLPWST NextBio:895720 GO:GO:0001055
Uniprot:P16356
Length = 1856
Score = 245 (91.3 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 51/114 (44%), Positives = 74/114 (64%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
++ +D LQ H A +++ G+P Q + + + QRLKGK+GR RGNL GKRVDF
Sbjct: 296 VLTDDVRLLQFHVATLVDNCIPGLPTATQKGGRPLKSIKQRLKGKEGRIRGNLMGKRVDF 355
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+ DPNL I VG+P +A+ LT+PE V N + L++LV G ++PG
Sbjct: 356 SARTVITADPNLPIDTVGVPRTIAQNLTFPEIVTPFNVDKLQELVNRGDTQYPG 409
Score = 214 (80.4 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 47/100 (47%), Positives = 62/100 (62%)
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L+ PG + +T E + + L+ RD G + + L N M +SGSKGS INISQ+
Sbjct: 719 LEPTPGNTLRQTFENKVNQILNDARDRTGSSAQKSLSEFNNFKSMVVSGSKGSKINISQV 778
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
IACVGQQ + GKR+P GF +R+LPHF K P SKG V+
Sbjct: 779 IACVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESKGFVE 818
Score = 62 (26.9 bits), Expect = 6.6e-20, Sum P(3) = 6.6e-20
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 319 LWTGKQIFSLILKPN 333
LWTGKQ+FSLI+ N
Sbjct: 579 LWTGKQVFSLIIPGN 593
Score = 48 (22.0 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 338 VNANLKTKGRAYTFKFSIMVKDQFRERNTACKISHVTFC-VDSPTEIQQQSGPGN 391
V+ LKT F KD + ++ CK+ H T V T I P N
Sbjct: 1124 VSKTLKTPSLT-VFLTGAAAKDPEKAKDVLCKLEHTTLKKVTCNTAIYYDPDPKN 1177
Score = 44 (20.5 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 379 SPTEIQQQSGPGN-----KYSPSYSNRTGTVPS 406
SPT +SG G KYSPS + T PS
Sbjct: 1708 SPTSPSYESGGGYSPSSPKYSPSSPTYSPTSPS 1740
>SGD|S000002299 [details] [associations]
symbol:RPO21 "RNA polymerase II largest subunit B220"
species:4932 "Saccharomyces cerevisiae" [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA;IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA;IDA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003968 "RNA-directed
RNA polymerase activity" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR000684 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007073
InterPro:IPR007075 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983 Pfam:PF04990
Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 Pfam:PF05001
PROSITE:PS00115 SMART:SM00663 SGD:S000002299 GO:GO:0005739
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0006366
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:X96876 EMBL:U27182
GO:GO:0003899 PDB:4GWQ PDBsum:4GWQ PDB:2LO6 PDBsum:2LO6
eggNOG:COG0086 GO:GO:0005665 PDB:1I3Q PDB:1I50 PDB:1I6H PDB:1K83
PDB:1NIK PDB:1NT9 PDB:1PQV PDB:1R5U PDB:1R9S PDB:1R9T PDB:1SFO
PDB:1TWA PDB:1TWC PDB:1TWF PDB:1TWG PDB:1TWH PDB:1WCM PDB:1Y1V
PDB:1Y1W PDB:1Y1Y PDB:1Y77 PDB:2B63 PDB:2B8K PDB:2E2H PDB:2E2I
PDB:2E2J PDB:2JA5 PDB:2JA6 PDB:2JA7 PDB:2JA8 PDB:2NVQ PDB:2NVT
PDB:2NVX PDB:2NVY PDB:2NVZ PDB:2R7Z PDB:2R92 PDB:2R93 PDB:2VUM
PDB:2YU9 PDB:3CQZ PDB:3FKI PDB:3GTG PDB:3GTJ PDB:3GTK PDB:3GTL
PDB:3GTM PDB:3GTO PDB:3GTP PDB:3GTQ PDB:3H3V PDB:3HOU PDB:3HOV
PDB:3HOW PDB:3HOX PDB:3HOY PDB:3HOZ PDB:3I4M PDB:3I4N PDB:3K1F
PDB:3K7A PDB:3M3Y PDB:3M4O PDB:3PO2 PDB:3PO3 PDB:3QT1 PDB:3RZD
PDB:3RZO PDB:3S14 PDB:3S15 PDB:3S16 PDB:3S17 PDB:3S1M PDB:3S1N
PDB:3S1Q PDB:3S1R PDB:3S2D PDB:3S2H PDB:4A3B PDB:4A3C PDB:4A3D
PDB:4A3E PDB:4A3F PDB:4A3G PDB:4A3I PDB:4A3J PDB:4A3K PDB:4A3L
PDB:4A3M PDB:4A93 PDB:4BBR PDB:4BBS PDBsum:1I3Q PDBsum:1I50
PDBsum:1I6H PDBsum:1K83 PDBsum:1NIK PDBsum:1NT9 PDBsum:1PQV
PDBsum:1R5U PDBsum:1R9S PDBsum:1R9T PDBsum:1SFO PDBsum:1TWA
PDBsum:1TWC PDBsum:1TWF PDBsum:1TWG PDBsum:1TWH PDBsum:1WCM
PDBsum:1Y1V PDBsum:1Y1W PDBsum:1Y1Y PDBsum:1Y77 PDBsum:2B63
PDBsum:2B8K PDBsum:2E2H PDBsum:2E2I PDBsum:2E2J PDBsum:2JA5
PDBsum:2JA6 PDBsum:2JA7 PDBsum:2JA8 PDBsum:2NVQ PDBsum:2NVT
PDBsum:2NVX PDBsum:2NVY PDBsum:2NVZ PDBsum:2R7Z PDBsum:2R92
PDBsum:2R93 PDBsum:2VUM PDBsum:2YU9 PDBsum:3CQZ PDBsum:3FKI
PDBsum:3GTG PDBsum:3GTJ PDBsum:3GTK PDBsum:3GTL PDBsum:3GTM
PDBsum:3GTO PDBsum:3GTP PDBsum:3GTQ PDBsum:3H3V PDBsum:3HOU
PDBsum:3HOV PDBsum:3HOW PDBsum:3HOX PDBsum:3HOY PDBsum:3HOZ
PDBsum:3I4M PDBsum:3I4N PDBsum:3K1F PDBsum:3K7A PDBsum:3M3Y
PDBsum:3M4O PDBsum:3PO2 PDBsum:3PO3 PDBsum:3QT1 PDBsum:3RZD
PDBsum:3RZO PDBsum:3S14 PDBsum:3S15 PDBsum:3S16 PDBsum:3S17
PDBsum:3S1M PDBsum:3S1N PDBsum:3S1Q PDBsum:3S1R PDBsum:3S2D
PDBsum:3S2H PDBsum:4A3B PDBsum:4A3C PDBsum:4A3D PDBsum:4A3E
PDBsum:4A3F PDBsum:4A3G PDBsum:4A3I PDBsum:4A3J PDBsum:4A3K
PDBsum:4A3L PDBsum:4A3M PDBsum:4A93 PDBsum:4BBR PDBsum:4BBS
HOGENOM:HOG000222975 OMA:KVLPWST KO:K03006 OrthoDB:EOG4J14H5
EMBL:X03128 EMBL:Z74188 PIR:S67686 RefSeq:NP_010141.1 PDB:2L0I
PDBsum:2L0I ProteinModelPortal:P04050 SMR:P04050 DIP:DIP-611N
IntAct:P04050 MINT:MINT-432838 STRING:P04050 PaxDb:P04050
PeptideAtlas:P04050 EnsemblFungi:YDL140C GeneID:851415
KEGG:sce:YDL140C CYGD:YDL140c GeneTree:ENSGT00700000105212
EvolutionaryTrace:P04050 NextBio:968606 ArrayExpress:P04050
Genevestigator:P04050 GermOnline:YDL140C Uniprot:P04050
Length = 1733
Score = 295 (108.9 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 64/137 (46%), Positives = 90/137 (65%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFT 60
I+E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF+
Sbjct: 289 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 348
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLRA 117
+RTVIS DPNL++ QVG+P+ +AK LTYPE V N + L QLV NGP++HPG ++R
Sbjct: 349 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPGAKYVIRD 408
Query: 118 KERLLSEGYSKCEGYIR 134
+ YSK G I+
Sbjct: 409 SGDRIDLRYSKRAGDIQ 425
Score = 221 (82.9 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 54/165 (32%), Positives = 88/165 (53%)
Query: 81 HVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMESGR 140
++ K++ + +H+ + + +GP +R ++E K + ++
Sbjct: 648 NIQKVVNF-WLLHNGFSTGIGDTIADGPT-----MREITETIAEAKKKVLDVTKEAQANL 701
Query: 141 LQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQM 200
L + G + E+ E +++ L+ RD AG+ L N M ++GSKGSFINI+QM
Sbjct: 702 LTAKHGMTLRESFEDNVVRFLNEARDKAGRLAEVNLKDLNNVKQMVMAGSKGSFINIAQM 761
Query: 201 IACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNVK--FLR 243
ACVGQQ++ GKR+ GF +R+LPHF K P SKG V+ +LR
Sbjct: 762 SACVGQQSVEGKRIAFGFVDRTLPHFSKDDYSPESKGFVENSYLR 806
Score = 46 (21.3 bits), Expect = 3.3e-26, Sum P(2) = 3.3e-26
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 319 LWTGKQIFSLILKPN 333
LW+GKQI S+ + PN
Sbjct: 571 LWSGKQILSVAI-PN 584
>CGD|CAL0001661 [details] [associations]
symbol:RPA190 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0007000 "nucleolus organization" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 CGD:CAL0001661
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AACQ01000244
EMBL:AACQ01000240 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 RefSeq:XP_710723.1 RefSeq:XP_710761.1
ProteinModelPortal:Q59LW3 STRING:Q59LW3 GeneID:3647643
GeneID:3647677 KEGG:cal:CaO19.1839 KEGG:cal:CaO19.9397
Uniprot:Q59LW3
Length = 1665
Score = 214 (80.4 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 47/111 (42%), Positives = 67/111 (60%)
Query: 9 LQLHCALFINS-ETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISP 67
LQ FI+S + P P G+ Q L+ K+G FR ++ GKRV++ +R+VISP
Sbjct: 414 LQNDVNAFIDSTKNQNAPAGKIPNP---GIKQALEKKEGLFRKHMMGKRVNYAARSVISP 470
Query: 68 DPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAK 118
DPNL+ ++G+P AK LTYPE V N L+Q V+NGPD PG ++ +
Sbjct: 471 DPNLETNEIGVPPVFAKKLTYPEPVTSYNASELRQAVINGPDTWPGAIQVQ 521
Score = 145 (56.1 bits), Expect = 3.8e-24, Sum P(2) = 3.8e-24
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 153 LEAVILKELSVIRDHAGKACLQE----LHPSNGPLVMALSGSKGSFINISQMIACVGQQA 208
L+A+ +++ I C+ + P N MALSG+KGS +N+SQ++ +GQQA
Sbjct: 874 LDALTQSKVNAITSQVVSKCVPDGTMKRFPYNSMQAMALSGAKGSNVNVSQIMCLLGQQA 933
Query: 209 INGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ G+RVP ++LP F F D + G +K
Sbjct: 934 LEGRRVPVMVSGKTLPSFKPFETDARAGGYIK 965
Score = 52 (23.4 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 319 LWTGKQIFSLIL---KPNRDCPVNANLKTK 345
LWTGKQ+ + +L KP+ VN K K
Sbjct: 707 LWTGKQVITTVLLNIKPDNVPGVNLISKNK 736
>SGD|S000005868 [details] [associations]
symbol:RPA190 "RNA polymerase I largest subunit A190"
species:4932 "Saccharomyces cerevisiae" [GO:0005634 "nucleus"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IDA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IMP;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0042790 "transcription of nuclear large rRNA transcript from
RNA polymerase I promoter" evidence=IGI;IMP] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 SGD:S000005868 EMBL:BK006948 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:X95720 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790
eggNOG:COG0086 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
HOGENOM:HOG000205401 GeneTree:ENSGT00550000074861 OrthoDB:EOG432464
EMBL:J03530 EMBL:Z75249 PIR:S67250 RefSeq:NP_014986.3
RefSeq:NP_620389.3 ProteinModelPortal:P10964 SMR:P10964
DIP:DIP-999N IntAct:P10964 MINT:MINT-613626 STRING:P10964
PaxDb:P10964 PeptideAtlas:P10964 EnsemblFungi:YOR341W GeneID:854519
GeneID:854523 KEGG:sce:YOR341W KEGG:sce:YOR343W-B CYGD:YOR341w
NextBio:976888 Genevestigator:P10964 GermOnline:YOR341W
Uniprot:P10964
Length = 1664
Score = 201 (75.8 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 39/78 (50%), Positives = 55/78 (70%)
Query: 36 GLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHA 95
G+ Q L+ K+G FR ++ GKRV++ +R+VISPDPN++ ++G+P A LTYPE V
Sbjct: 455 GVKQALEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAY 514
Query: 96 NKEHLKQLVLNGPDKHPG 113
N L+Q V+NGPDK PG
Sbjct: 515 NIAELRQAVINGPDKWPG 532
Score = 147 (56.8 bits), Expect = 7.7e-23, Sum P(2) = 7.7e-23
Identities = 33/92 (35%), Positives = 51/92 (55%)
Query: 153 LEAVILKELSVIRDHAGKACLQE----LHPSNGPLVMALSGSKGSFINISQMIACVGQQA 208
L+AV +++ I C+ + P N MALSG+KGS +N+SQ++ +GQQA
Sbjct: 892 LDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQIMCLLGQQA 951
Query: 209 INGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
+ G+RVP ++LP F + D + G VK
Sbjct: 952 LEGRRVPVMVSGKTLPSFKPYETDAMAGGYVK 983
Score = 49 (22.3 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 319 LWTGKQIFSLILK--PNRDCP-VNANLKTKGR-AYTFKFSIMVKDQFRERNTACKI 370
LWTGKQI + +L D P +N K K + Y K S+ + F++ C I
Sbjct: 725 LWTGKQIITTVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFKDGALLCGI 780
Score = 41 (19.5 bits), Expect = 8.2e-12, Sum P(2) = 8.2e-12
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 218 FDNRSLPHFDKFSKDPASKGNVKF 241
+ ++L + K SK+P K +VK+
Sbjct: 1097 YSKKTLKYRKKHSKEPHYKQSVKY 1120
>CGD|CAL0000919 [details] [associations]
symbol:RPO21 species:5476 "Candida albicans" [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0030447 "filamentous growth" evidence=IMP]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0009267 "cellular response to starvation"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0003968 "RNA-directed RNA
polymerase activity" evidence=IEA] InterPro:IPR000684
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007073 InterPro:IPR007075 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 Pfam:PF00623 Pfam:PF04983
Pfam:PF04990 Pfam:PF04992 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
Pfam:PF05001 PROSITE:PS00115 SMART:SM00663 CGD:CAL0000919
GO:GO:0071216 GO:GO:0036180 GO:GO:0003677 GO:GO:0006366
GO:GO:0009267 Gene3D:2.40.40.20 InterPro:IPR009010
EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899 eggNOG:COG0086
GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1 STRING:Q5ACI7
GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 277 (102.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 64/143 (44%), Positives = 90/143 (62%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+ Y+K G I A++ G
Sbjct: 408 DTGDRIDLRYNKRAGDI-ALQYG 429
Score = 252 (93.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 56/131 (42%), Positives = 76/131 (58%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E K + I + +L+ +PG + E+ E + + L+ RD AG++
Sbjct: 676 MRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 736 SLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 47 (21.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQ+ SL +
Sbjct: 571 LWTGKQLLSLAI 582
Score = 38 (18.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 387 SGPGNKYSPSYSNRTGTVPS 406
+ PG YSP+ + + T PS
Sbjct: 1537 TSPGYGYSPTSPSYSPTSPS 1556
>UNIPROTKB|Q5ACI7 [details] [associations]
symbol:RPO21 "DNA-directed RNA polymerase" species:237561
"Candida albicans SC5314" [GO:0009267 "cellular response to
starvation" evidence=IMP] [GO:0030447 "filamentous growth"
evidence=IMP] [GO:0036170 "filamentous growth of a population of
unicellular organisms in response to starvation" evidence=IMP]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0071216
"cellular response to biotic stimulus" evidence=IMP]
InterPro:IPR000684 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007073 InterPro:IPR007075
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
Pfam:PF00623 Pfam:PF04983 Pfam:PF04990 Pfam:PF04992 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 Pfam:PF05001 PROSITE:PS00115
SMART:SM00663 CGD:CAL0000919 GO:GO:0071216 GO:GO:0036180
GO:GO:0003677 GO:GO:0006366 GO:GO:0009267 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AACQ01000032 GO:GO:0036170 GO:GO:0003899
eggNOG:COG0086 GO:GO:0005665 KO:K03006 RefSeq:XP_719414.1
STRING:Q5ACI7 GeneID:3638991 KEGG:cal:CaO19.7655 Uniprot:Q5ACI7
Length = 1728
Score = 277 (102.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 64/143 (44%), Positives = 90/143 (62%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I E LQ H A +++++ +G P +Q + + + RLKGK+GR RGNL GKRVDF
Sbjct: 288 VISEFEALLQFHVATYMDNDIAGQPQALQKTGRPIKSIRARLKGKEGRLRGNLMGKRVDF 347
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG---LLR 116
++RTVIS DPNL + QVG+P +AK LTYPE V N L +LV NGP++HPG ++R
Sbjct: 348 SARTVISGDPNLDLDQVGVPISIAKTLTYPEIVTPYNIHKLTELVRNGPNEHPGAKYVIR 407
Query: 117 AKERLLSEGYSKCEGYIRAMESG 139
+ Y+K G I A++ G
Sbjct: 408 DTGDRIDLRYNKRAGDI-ALQYG 429
Score = 252 (93.8 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 56/131 (42%), Positives = 76/131 (58%)
Query: 115 LRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQ 174
+R + + E K + I + +L+ +PG + E+ E + + L+ RD AG++
Sbjct: 676 MRDVNKTIQEAKQKVQEIIIDAQHNKLEPEPGMTLRESFEHNVSRVLNQARDTAGRSAEM 735
Query: 175 ELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPA 234
L N M SGSKGSFINISQM ACVGQQ + GKR+P GF +RSLPHF K P
Sbjct: 736 SLKDLNNVKQMVTSGSKGSFINISQMSACVGQQIVEGKRIPFGFGDRSLPHFTKDDYSPE 795
Query: 235 SKGNVK--FLR 243
SKG V+ +LR
Sbjct: 796 SKGFVENSYLR 806
Score = 47 (21.6 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQ+ SL +
Sbjct: 571 LWTGKQLLSLAI 582
Score = 38 (18.4 bits), Expect = 1.1e-22, Sum P(3) = 1.1e-22
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 387 SGPGNKYSPSYSNRTGTVPS 406
+ PG YSP+ + + T PS
Sbjct: 1537 TSPGYGYSPTSPSYSPTSPS 1556
>UNIPROTKB|G4NBX7 [details] [associations]
symbol:MGG_01158 "DNA-directed RNA polymerase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
EMBL:CM001235 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0043581 GO:GO:0003899
KO:K02999 PANTHER:PTHR19376:SF11 RefSeq:XP_003717763.1
ProteinModelPortal:G4NBX7 EnsemblFungi:MGG_01158T0 GeneID:2675173
KEGG:mgr:MGG_01158 Uniprot:G4NBX7
Length = 1719
Score = 227 (85.0 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 46/113 (40%), Positives = 68/113 (60%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++ E W LQ C + T K+ G+ Q+L+ K+G FR N+ GKRV++
Sbjct: 437 ILHEAWTELQ-DCVNTLIDNTKSPTQGAAAKALEEGIKQKLEKKEGLFRKNMMGKRVNYA 495
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+R+VISPDPN++ ++G+P A+ LTYPE V N ++Q V+NGPDK PG
Sbjct: 496 ARSVISPDPNIETNEIGVPPVFARKLTYPEPVTSHNFRDMQQAVINGPDKWPG 548
Score = 113 (44.8 bits), Expect = 2.7e-22, Sum P(2) = 2.7e-22
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIAC-VGQQAINGKRVPNGFDNRSLPHFDKFSK 231
L++ P N M +SG+KG +N + +I+C +GQQ + G+RVP +SLP F F
Sbjct: 934 LEKQFPKNQMQAMTISGAKGGQVN-ANLISCNLGQQVLEGRRVPLMVSGKSLPCFKPFET 992
Query: 232 DPASKGNV--KFL 242
D + G + +FL
Sbjct: 993 DIRAGGYIVNRFL 1005
Score = 48 (22.0 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 320 WTGKQIFSLILKPNR--DC 336
WTGKQ+ + +L+ R DC
Sbjct: 742 WTGKQVITTVLRNIRPLDC 760
>UNIPROTKB|Q6NX41 [details] [associations]
symbol:POLR2A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0003677 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 EMBL:AC113189 GO:GO:0003899 IPI:IPI00031627
UniGene:Hs.270017 HGNC:HGNC:9187 ChiTaRS:POLR2A EMBL:BC067295
SMR:Q6NX41 STRING:Q6NX41 Ensembl:ENST00000572844 UCSC:uc002ghe.3
HOVERGEN:HBG097653 Uniprot:Q6NX41
Length = 566
Score = 273 (101.2 bits), Expect = 8.6e-22, P = 8.6e-22
Identities = 56/114 (49%), Positives = 77/114 (67%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I ED + LQ H A +++E G+P MQ + + L QRLKGK+GR RGNL GKRVDF
Sbjct: 302 VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 361
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVI+PDPNL I QVG+P +A +T+ E V N + L++LV G ++PG
Sbjct: 362 SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPG 415
>FB|FBgn0019938 [details] [associations]
symbol:RpI1 "RNA polymerase I subunit" species:7227
"Drosophila melanogaster" [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=ISS;NAS] [GO:0005736 "DNA-directed
RNA polymerase I complex" evidence=ISS] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:AE013599 GO:GO:0005730 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K02999
PANTHER:PTHR19376:SF11 EMBL:Y09103 EMBL:AY121632 PIR:T13803
RefSeq:NP_523743.1 UniGene:Dm.8031 ProteinModelPortal:P91875
SMR:P91875 MINT:MINT-1742038 STRING:P91875 PaxDb:P91875
GeneID:36617 KEGG:dme:Dmel_CG10122 CTD:36617 FlyBase:FBgn0019938
InParanoid:P91875 OrthoDB:EOG466T1R GenomeRNAi:36617 NextBio:799515
Bgee:P91875 GermOnline:CG10122 Uniprot:P91875
Length = 1642
Score = 211 (79.3 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 41/91 (45%), Positives = 62/91 (68%)
Query: 24 IPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHV 82
+ +NM + KS GL Q ++ K G R ++ GKRV++ +RTVI+PDPN+ + ++GIP+
Sbjct: 385 LDVNMSREMKSGEGLKQIIEKKSGLIRSHMMGKRVNYAARTVITPDPNINVDEIGIPDIF 444
Query: 83 AKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
AK L+YP V N L+++V+NGPD HPG
Sbjct: 445 AKKLSYPVPVTEWNVTELRKMVMNGPDVHPG 475
Score = 123 (48.4 bits), Expect = 1.6e-21, Sum P(2) = 1.6e-21
Identities = 26/60 (43%), Positives = 33/60 (55%)
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
PSN +M LSG+KGS +N Q+ +GQ + GKR P +SLP F F P S G
Sbjct: 868 PSNNLQLMVLSGAKGSMVNTMQISCLLGQIELEGKRPPLMISGKSLPSFTSFETSPKSGG 927
Score = 45 (20.9 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 8/12 (66%), Positives = 10/12 (83%)
Query: 319 LWTGKQIFSLIL 330
LW+GKQI S I+
Sbjct: 658 LWSGKQILSTII 669
>DICTYBASE|DDB_G0275759 [details] [associations]
symbol:rpa1 "RNA polymerase I, largest subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006360 "transcription
from RNA polymerase I promoter" evidence=ISS] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISS] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663
dictyBase:DDB_G0275759 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000151_GR EMBL:AAFI02000013 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0006360 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 RefSeq:XP_643519.1 HSSP:P04050
ProteinModelPortal:Q86H36 STRING:Q86H36 PRIDE:Q86H36
EnsemblProtists:DDB0216292 GeneID:8620100 KEGG:ddi:DDB_G0275759
KO:K02999 OMA:CLLNETT ProtClustDB:CLSZ2497252
PANTHER:PTHR19376:SF11 Uniprot:Q86H36
Length = 1615
Score = 203 (76.5 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 41/105 (39%), Positives = 66/105 (62%)
Query: 9 LQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPD 68
LQ+H +N+ N + G+ Q L+ K+G FR ++ GKRV++ +RTVISPD
Sbjct: 398 LQMH----VNNMYDNSKSNSNTNEVANGIKQILEKKEGLFRKHMMGKRVNYAARTVISPD 453
Query: 69 PNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
+L+ ++G+P++ AK LT+P+ V N L Q V+NGP+++PG
Sbjct: 454 ISLETNEMGVPQYFAKTLTFPQPVTSFNYNQLAQAVINGPEQYPG 498
Score = 123 (48.4 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 27/71 (38%), Positives = 40/71 (56%)
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
Q+ P N +M +SG+KGS +N SQ+ +GQQ + GKRVP ++LP F +
Sbjct: 880 QKPFPKNNFSLMTVSGAKGSVVNFSQVSCLLGQQELEGKRVPRMVSGKTLPSFQAYDASA 939
Query: 234 ASKGNV--KFL 242
+ G V +FL
Sbjct: 940 RAGGFVMDRFL 950
Score = 40 (19.1 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 319 LWTGKQIFSLIL 330
LW+GKQ+ S L
Sbjct: 688 LWSGKQLISAAL 699
>TAIR|locus:2076661 [details] [associations]
symbol:NRPA1 "nuclear RNA polymerase A1" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA] [GO:0006354
"DNA-dependent transcription, elongation" evidence=RCA] [GO:0006406
"mRNA export from nucleus" evidence=RCA] [GO:0006606 "protein
import into nucleus" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0009506 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:AL049660 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 HSSP:P04050 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 IPI:IPI00546513
PIR:T06754 RefSeq:NP_191325.1 UniGene:At.50286
ProteinModelPortal:Q9SVY0 SMR:Q9SVY0 IntAct:Q9SVY0 STRING:Q9SVY0
PaxDb:Q9SVY0 PRIDE:Q9SVY0 EnsemblPlants:AT3G57660.1 GeneID:824935
KEGG:ath:AT3G57660 TAIR:At3g57660 InParanoid:Q9SVY0
PhylomeDB:Q9SVY0 ProtClustDB:CLSN2684581 Genevestigator:Q9SVY0
Uniprot:Q9SVY0
Length = 1670
Score = 216 (81.1 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 61/184 (33%), Positives = 92/184 (50%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ + +S+T+ + Q + S G+ Q L+ K+G FR + GKRV+ R+VI
Sbjct: 399 WRNLQESVNVLFDSKTATV----QSQRDSSGICQLLEKKEGLFRQKMMGKRVNHACRSVI 454
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEG 125
SPDP + + +GIP A LTYPERV N E L++ ++NGPD HPG ++ +
Sbjct: 455 SPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEKLREAIINGPDIHPGATHYSDKSSTMK 514
Query: 126 YSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHA--GKACLQELHPS-NGP 182
E RA+ + +L + G + E I E + H G L P+ + P
Sbjct: 515 LPSTEKARRAI-ARKLLSSRGATTELGKTCDINFEGKTVHRHMRDGDIVLVNRQPTLHKP 573
Query: 183 LVMA 186
+MA
Sbjct: 574 SLMA 577
Score = 107 (42.7 bits), Expect = 2.1e-20, Sum P(2) = 2.1e-20
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 184 VMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV--KF 241
+M +SG+KGS +N Q+ + +GQQ + GKRVP ++LP F + P + G + +F
Sbjct: 940 LMTISGAKGSKVNFQQISSHLGQQDLEGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRF 999
Query: 242 L 242
L
Sbjct: 1000 L 1000
Score = 46 (21.3 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 319 LWTGKQIFSLIL 330
LWTGKQ+ + +L
Sbjct: 714 LWTGKQVITAVL 725
>UNIPROTKB|F1LQN7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF05000 SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 PANTHER:PTHR19376:SF11 IPI:IPI00389616
Ensembl:ENSRNOT00000013417 ArrayExpress:F1LQN7 Uniprot:F1LQN7
Length = 1011
Score = 194 (73.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 43/108 (39%), Positives = 63/108 (58%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +S+ + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 419 WIRLQSHVNIVFDSDMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 473
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 474 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 521
Score = 109 (43.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 895 EEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 954
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 955 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 984
Score = 51 (23.0 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK 345
LWTGKQ+ S +L P P+N K K
Sbjct: 709 LWTGKQVVSTLLINIIPEDYTPLNLTGKAK 738
>MGI|MGI:1096397 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=ISO;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0009303 "rRNA transcription" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] Reactome:REACT_78136 InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 MGI:MGI:1096397 GO:GO:0005654 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0009303 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086
CleanEx:MM_RPA1 Reactome:REACT_86751 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 CTD:25885 HOGENOM:HOG000205401
HOVERGEN:HBG017741 OrthoDB:EOG41VK23 ChiTaRS:POLR1A EMBL:AF000938
EMBL:BC053744 IPI:IPI00313726 PIR:T13961 RefSeq:NP_033114.3
UniGene:Mm.135581 ProteinModelPortal:O35134 SMR:O35134
STRING:O35134 PhosphoSite:O35134 PaxDb:O35134 PRIDE:O35134
Ensembl:ENSMUST00000055296 GeneID:20019 KEGG:mmu:20019
UCSC:uc009chv.2 GeneTree:ENSGT00550000074861 InParanoid:O35134
NextBio:297531 Bgee:O35134 Genevestigator:O35134
GermOnline:ENSMUSG00000049553 Uniprot:O35134
Length = 1717
Score = 197 (74.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 44/108 (40%), Positives = 63/108 (58%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 398 WIRLQSHVNIVFDSEMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 500
Score = 109 (43.4 bits), Expect = 2.2e-18, Sum P(2) = 2.2e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 874 EEVNHYSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 933
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 934 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 963
Score = 53 (23.7 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK 345
LWTGKQ+ S +L P P+N + K K
Sbjct: 688 LWTGKQVVSTLLINIIPEDYAPLNLSGKAK 717
>POMBASE|SPBC4C3.05c [details] [associations]
symbol:nuc1 "DNA-directed RNA polymerase I complex large
subunit Nuc1" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IGI] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006360 "transcription from RNA polymerase I
promoter" evidence=ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0007000 "nucleolus organization" evidence=IMP]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0034503 "protein
localization to nucleolar rDNA repeats" evidence=IMP]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 PomBase:SPBC4C3.05c
GO:GO:0005829 GO:GO:0046872 GO:GO:0003677 EMBL:CU329671
GO:GO:0008270 GenomeReviews:CU329671_GR GO:GO:0006406
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0034503 GO:GO:0006360
GO:GO:0007000 GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999
OMA:CLLNETT PANTHER:PTHR19376:SF11 HOGENOM:HOG000205401 EMBL:X14783
EMBL:M37411 PIR:JS0080 RefSeq:NP_596300.1 ProteinModelPortal:P15398
STRING:P15398 EnsemblFungi:SPBC4C3.05c.1 GeneID:2540873
KEGG:spo:SPBC4C3.05c OrthoDB:EOG432464 NextBio:20801989
Uniprot:P15398
Length = 1689
Score = 189 (71.6 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 37/85 (43%), Positives = 56/85 (65%)
Query: 29 QPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTY 88
Q ++ G+ Q L+ K+G FR ++ GKRV++ +R+VISPDPN++ ++G+P A LTY
Sbjct: 456 QSRTVPPGIKQILEKKEGLFRKHMMGKRVNYAARSVISPDPNIETNEIGVPPVFATKLTY 515
Query: 89 PERVHHANKEHLKQLVLNGPDKHPG 113
PE V N ++ V+NGP K PG
Sbjct: 516 PEPVTLYNFNEMRNAVINGPHKWPG 540
Score = 115 (45.5 bits), Expect = 4.1e-18, Sum P(2) = 4.1e-18
Identities = 26/67 (38%), Positives = 38/67 (56%)
Query: 178 PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
P N M +SG+KGS +N+SQ+ +GQQ + G+RVP +SLP F + S G
Sbjct: 934 PYNHMQTMTVSGAKGSNVNVSQISCLLGQQELEGRRVPLMVSGKSLPSFVPYETSAKSGG 993
Query: 238 NV--KFL 242
+ +FL
Sbjct: 994 FIASRFL 1000
Score = 59 (25.8 bits), Expect = 2.7e-12, Sum P(2) = 2.7e-12
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 320 WTGKQIFSLIL---KPNRDCPVNANLKTKGR 347
WTGKQI S +L KP+ D P NLK+K +
Sbjct: 741 WTGKQIISSVLLNLKPS-DRP-GLNLKSKAK 769
>WB|WBGene00012999 [details] [associations]
symbol:rpoa-1 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
HSSP:P04050 KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:Z83219 EMBL:AL032648 EMBL:Z93392
PIR:A88355 PIR:T19606 RefSeq:NP_001022450.1
ProteinModelPortal:G5ED21 SMR:G5ED21 PRIDE:G5ED21
EnsemblMetazoa:Y48E1A.1a GeneID:175015 KEGG:cel:CELE_Y48E1A.1
CTD:175015 WormBase:Y48E1A.1a NextBio:886412 Uniprot:G5ED21
Length = 1737
Score = 190 (71.9 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 40/88 (45%), Positives = 56/88 (63%)
Query: 26 LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKI 85
LN + G+ Q L+ KQG FR ++ GKRV+F R+VI+PDP L I ++GIP+ AK
Sbjct: 445 LNKGDRDSIAGIKQILEKKQGLFRMHMMGKRVNFACRSVITPDPYLDIDEIGIPDIFAKK 504
Query: 86 LTYPERVHHANKEHLKQLVLNGPDKHPG 113
LT+ E V+ N +K L+ GP +HPG
Sbjct: 505 LTFTEPVNAFNVNEMKGLLRQGPHQHPG 532
Score = 114 (45.2 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
Identities = 30/83 (36%), Positives = 42/83 (50%)
Query: 166 DHAGKAC----LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNR 221
D K+C L L P N +M SG+KGS +N Q+ C+GQ + GKR+ R
Sbjct: 910 DAITKSCVPTGLLRLFPQNALQLMIQSGAKGSAVNAIQISGCLGQIELEGKRMAVTIAGR 969
Query: 222 SLPHFDKFSKDPASKGNV--KFL 242
+LP F F P + G + +FL
Sbjct: 970 TLPSFRCFDPSPRAGGYIDQRFL 992
Score = 51 (23.0 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 319 LWTGKQIFSLILKPNRDCPVNAN--LKTKGRAYTFKFSIMVKDQFRERNTACKISHVTF 375
LWTGKQ+ + I+K +C + + G+A T S + F SHV F
Sbjct: 720 LWTGKQVITTIVK---NCIPDGKPLINLDGKAKT-PLSCWIVPGFDAPQFDMSESHVVF 774
Score = 43 (20.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 18/68 (26%), Positives = 31/68 (45%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKG 192
++ SG LQ C + LE + + S +RDH G +Q + +G + +K
Sbjct: 1016 VKTSRSGYLQR---CIIKH-LEGIRVHYDSTVRDHDGSV-IQFRYGEDG-----MDTTKA 1065
Query: 193 SFINISQM 200
+F+N M
Sbjct: 1066 TFLNKKTM 1073
>RGD|620824 [details] [associations]
symbol:Polr1a "polymerase (RNA) I polypeptide A" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=ISO] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=ISO;IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009303 "rRNA
transcription" evidence=IDA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 RGD:620824
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0009303 GO:GO:0005736 GO:GO:0003899
eggNOG:COG0086 KO:K02999 PANTHER:PTHR19376:SF11 CTD:25885
HOGENOM:HOG000205401 HOVERGEN:HBG017741 OrthoDB:EOG41VK23
EMBL:AF025425 IPI:IPI00199160 PIR:T14103 RefSeq:NP_113960.1
UniGene:Rn.24877 ProteinModelPortal:O54889 STRING:O54889
PhosphoSite:O54889 PRIDE:O54889 GeneID:83581 KEGG:rno:83581
UCSC:RGD:620824 InParanoid:O54889 NextBio:616111
ArrayExpress:O54889 Genevestigator:O54889 Uniprot:O54889
Length = 1716
Score = 194 (73.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 43/108 (39%), Positives = 63/108 (58%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +S+ + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 398 WIRLQSHVNIVFDSDMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 500
Score = 109 (43.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 874 EEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 933
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 934 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 963
Score = 51 (23.0 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK 345
LWTGKQ+ S +L P P+N K K
Sbjct: 688 LWTGKQVVSTLLINIIPEDYTPLNLTGKAK 717
>UNIPROTKB|G3V7B7 [details] [associations]
symbol:Polr1a "DNA-directed RNA polymerase" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005736 "DNA-directed RNA polymerase I complex" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 RGD:620824 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CH473957
GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 UniGene:Rn.24877
Ensembl:ENSRNOT00000013587 Uniprot:G3V7B7
Length = 1716
Score = 194 (73.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 43/108 (39%), Positives = 63/108 (58%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +S+ + L P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 398 WIRLQSHVNIVFDSDMDKLMLEKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 452
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 453 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 500
Score = 109 (43.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 874 EEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 933
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 934 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 963
Score = 51 (23.0 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK 345
LWTGKQ+ S +L P P+N K K
Sbjct: 688 LWTGKQVVSTLLINIIPEDYTPLNLTGKAK 717
>UNIPROTKB|E1BIX2 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9913
"Bos taurus" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
KO:K02999 OMA:CLLNETT PANTHER:PTHR19376:SF11 CTD:25885
GeneTree:ENSGT00550000074861 EMBL:DAAA02031123 IPI:IPI00714586
RefSeq:NP_001179805.1 UniGene:Bt.52712 PRIDE:E1BIX2
Ensembl:ENSBTAT00000008496 GeneID:536316 KEGG:bta:536316
NextBio:20876927 Uniprot:E1BIX2
Length = 1717
Score = 194 (73.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + + P G+ Q L+ K G FR ++ GKRVD+ +R+VI
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMEKYP-----GIRQILEKKDGLFRKHMMGKRVDYAARSVI 445
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 446 CPDMYISTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNMHPG 493
Score = 109 (43.4 bits), Expect = 4.9e-18, Sum P(2) = 4.9e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 867 EEVNHYSNEINKACMPFGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 926
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 927 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 956
Score = 57 (25.1 bits), Expect = 1.2e-12, Sum P(2) = 1.2e-12
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P+N + K K G+A+
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLNLSGKAKIGGKAW 716
Score = 38 (18.4 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 191 KGSFINISQMIACVGQQAIN 210
KG+F+N SQ I +A+N
Sbjct: 1086 KGAFLNYSQKIQAA-VKALN 1104
>UNIPROTKB|J9P5G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 KO:K02999 PANTHER:PTHR19376:SF11
CTD:25885 GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
RefSeq:XP_532976.3 Ensembl:ENSCAFT00000047500 GeneID:475766
KEGG:cfa:475766 Uniprot:J9P5G4
Length = 1717
Score = 193 (73.0 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + + P G+ Q L+ K G FR ++ GKRVD+ +R+VI
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMEKYP-----GIRQILEKKDGLFRKHMMGKRVDYAARSVI 445
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 446 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 493
Score = 109 (43.4 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 867 EEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 926
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 927 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 956
Score = 52 (23.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P++ + K K G+A+
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLSLSGKAKISGKAW 716
Score = 45 (20.9 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 191 KGSFINISQMIACVGQQAINGKRVPNGFDN-RSL 223
KG+F+N SQ I Q A+ + +G N RSL
Sbjct: 1086 KGAFLNYSQKI----QAAVKALNLEDGNQNGRSL 1115
>UNIPROTKB|E2R0G4 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9615
"Canis lupus familiaris" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 OMA:CLLNETT PANTHER:PTHR19376:SF11
GeneTree:ENSGT00550000074861 EMBL:AAEX03010931
Ensembl:ENSCAFT00000012228 Uniprot:E2R0G4
Length = 1746
Score = 193 (73.0 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 43/108 (39%), Positives = 62/108 (57%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + + P G+ Q L+ K G FR ++ GKRVD+ +R+VI
Sbjct: 403 WIRLQSHVNIVFDSEMDKLMMEKYP-----GIRQILEKKDGLFRKHMMGKRVDYAARSVI 457
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 458 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 505
Score = 109 (43.4 bits), Expect = 6.6e-18, Sum P(2) = 6.6e-18
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 879 EEVNHYSNEINKACMPFGLHRQFPDNNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 938
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 939 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 968
Score = 52 (23.4 bits), Expect = 5.5e-12, Sum P(2) = 5.5e-12
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P++ + K K G+A+
Sbjct: 693 LWTGKQVVSTLLINIIPEDHIPLSLSGKAKISGKAW 728
Score = 45 (20.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 191 KGSFINISQMIACVGQQAINGKRVPNGFDN-RSL 223
KG+F+N SQ I Q A+ + +G N RSL
Sbjct: 1098 KGAFLNYSQKI----QAAVKALNLEDGNQNGRSL 1127
>UNIPROTKB|F1SVC3 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9823
"Sus scrofa" [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0005736 GO:GO:0003899
OMA:CLLNETT PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:CU570839 Ensembl:ENSSSCT00000009008 Uniprot:F1SVC3
Length = 1723
Score = 192 (72.6 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 43/108 (39%), Positives = 61/108 (56%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + + P G+ Q L+ K G FR ++ GKRVD+ +R+VI
Sbjct: 395 WIRLQSHVNIVFDSEMDKLTMEKYP-----GIRQILEKKDGLFRKHMMGKRVDYAARSVI 449
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP HPG
Sbjct: 450 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPTVHPG 497
Score = 107 (42.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + KAC+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 871 EEVNHHSNEINKACMPLGLHRQFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 930
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F+ + P + G V +FL
Sbjct: 931 PLMASGKSLPCFEPYEFTPRAGGFVTGRFL 960
Score = 54 (24.1 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P+N K K G+A+
Sbjct: 685 LWTGKQVVSTLLINIIPEDQIPLNLLGKAKIGGKAW 720
>ZFIN|ZDB-GENE-030131-5286 [details] [associations]
symbol:polr1a "polymerase (RNA) I polypeptide A"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 ZFIN:ZDB-GENE-030131-5286
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861 EMBL:AL929267
EMBL:CU694378 IPI:IPI00934858 Ensembl:ENSDART00000114501
ArrayExpress:E7F710 Bgee:E7F710 Uniprot:E7F710
Length = 1710
Score = 177 (67.4 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 37/81 (45%), Positives = 53/81 (65%)
Query: 33 KSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERV 92
K G+ Q L+ K+G FR ++ GKRVD+ +R+VI PD + ++GIP A LTYP+ V
Sbjct: 419 KFPGVRQLLEKKEGLFRKHMMGKRVDYAARSVICPDMYIGTNEIGIPMVFATKLTYPQPV 478
Query: 93 HHANKEHLKQLVLNGPDKHPG 113
N + ++Q VLNGP+ HPG
Sbjct: 479 TPWNVKEMRQAVLNGPNIHPG 499
Score = 114 (45.2 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 30/90 (33%), Positives = 47/90 (52%)
Query: 159 KELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+E++ + ++ K C+ LH P N +M SG+KGS +N Q+ +GQ + G+R
Sbjct: 863 EEVNQVNNNINKVCMPLGLHRSFPENNLQMMVQSGAKGSTVNTMQISCLLGQIELEGRRP 922
Query: 215 PNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
P +SLP F + P S G V +FL
Sbjct: 923 PLMPSGKSLPCFQPYEPQPRSGGFVTGRFL 952
Score = 60 (26.2 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P+N K K G+A+
Sbjct: 686 LWTGKQVVSTLLLNVIPENSIPLNLTGKAKIPGKAW 721
Score = 45 (20.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 133 IRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQE-LHPSN 180
I + S ++T P S + LK++ +R + CL E LH N
Sbjct: 1247 ILLVASSNIKT-PMMSIPVVMNKKALKQVKTLRKKITRVCLSEVLHKVN 1294
>UNIPROTKB|B9ZVN9 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 EMBL:AC009309 PANTHER:PTHR19376:SF11 HGNC:HGNC:17264
HOGENOM:HOG000205401 ChiTaRS:POLR1A EMBL:AC012511 IPI:IPI00916060
ProteinModelPortal:B9ZVN9 STRING:B9ZVN9 Ensembl:ENST00000409681
ArrayExpress:B9ZVN9 Bgee:B9ZVN9 Uniprot:B9ZVN9
Length = 1659
Score = 196 (74.1 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 43/108 (39%), Positives = 64/108 (59%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + ++ P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMDKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 445
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 446 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 493
Score = 57 (25.1 bits), Expect = 6.7e-13, Sum P(2) = 6.7e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P+N + K K G+A+
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAW 716
>UNIPROTKB|O95602 [details] [associations]
symbol:POLR1A "DNA-directed RNA polymerase I subunit RPA1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0005736
"DNA-directed RNA polymerase I complex" evidence=NAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=TAS] [GO:0006361 "transcription
initiation from RNA polymerase I promoter" evidence=TAS]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=TAS] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR015699 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CH471053
GO:GO:0005654 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0009303
Reactome:REACT_1788 GO:GO:0006363 GO:GO:0006362 GO:GO:0006361
GO:GO:0005736 GO:GO:0003899 eggNOG:COG0086 KO:K02999 OMA:CLLNETT
PANTHER:PTHR19376:SF11 EMBL:U33460 EMBL:AH007280 EMBL:AK302458
EMBL:BC117173 EMBL:BC126303 EMBL:AL117467 IPI:IPI00031960
PIR:T17252 RefSeq:NP_056240.2 UniGene:Hs.531818
ProteinModelPortal:O95602 SMR:O95602 DIP:DIP-27537N IntAct:O95602
MINT:MINT-111492 STRING:O95602 PhosphoSite:O95602
SWISS-2DPAGE:O95602 PaxDb:O95602 PRIDE:O95602
Ensembl:ENST00000263857 GeneID:25885 KEGG:hsa:25885 UCSC:uc002sqs.3
CTD:25885 GeneCards:GC02M086253 H-InvDB:HIX0002233 HGNC:HGNC:17264
HPA:CAB010145 neXtProt:NX_O95602 PharmGKB:PA134891380
HOGENOM:HOG000205401 HOVERGEN:HBG017741 InParanoid:O95602
OrthoDB:EOG41VK23 ChiTaRS:POLR1A GenomeRNAi:25885 NextBio:47304
PMAP-CutDB:O95602 ArrayExpress:O95602 Bgee:O95602 CleanEx:HS_POLR1A
Genevestigator:O95602 GermOnline:ENSG00000068654 Uniprot:O95602
Length = 1720
Score = 196 (74.1 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 43/108 (39%), Positives = 64/108 (59%)
Query: 6 WEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVI 65
W LQ H + +SE + ++ P G+ Q L+ K+G FR ++ GKRVD+ +R+VI
Sbjct: 391 WIRLQSHVNIVFDSEMDKLMMDKYP-----GIRQILEKKEGLFRKHMMGKRVDYAARSVI 445
Query: 66 SPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
PD + ++GIP A LTYP+ V N + L+Q V+NGP+ HPG
Sbjct: 446 CPDMYINTNEIGIPMVFATKLTYPQPVTPWNVQELRQAVINGPNVHPG 493
Score = 57 (25.1 bits), Expect = 7.3e-13, Sum P(2) = 7.3e-13
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 319 LWTGKQIFSLILK---PNRDCPVNANLKTK--GRAY 349
LWTGKQ+ S +L P P+N + K K G+A+
Sbjct: 681 LWTGKQVVSTLLINIIPEDHIPLNLSGKAKITGKAW 716
>TIGR_CMR|BA_0103 [details] [associations]
symbol:BA_0103 "DNA-directed RNA polymerase, beta' subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 EMBL:X89230 RefSeq:NP_842671.2
RefSeq:YP_016708.1 RefSeq:YP_026389.1 ProteinModelPortal:P77819
IntAct:P77819 DNASU:1086436 EnsemblBacteria:EBBACT00000011911
EnsemblBacteria:EBBACT00000018208 EnsemblBacteria:EBBACT00000020960
GeneID:1086436 GeneID:2818165 GeneID:2851002 KEGG:ban:BA_0103
KEGG:bar:GBAA_0103 KEGG:bat:BAS0103 HOGENOM:HOG000218387
BioCyc:BANT260799:GJAJ-114-MONOMER
BioCyc:BANT261594:GJ7F-116-MONOMER Uniprot:P77819
Length = 1203
Score = 158 (60.7 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 36/89 (40%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++Q + LQ I++ G P+ + L LKGKQGRFR NL GKRVD++
Sbjct: 280 IVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI PNL++YQ G+P+ +A L P
Sbjct: 340 GRSVIVVGPNLKMYQCGLPKEMALELFKP 368
Score = 61 (26.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 26/101 (25%), Positives = 46/101 (45%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L K+ +L E +K + I+ G L T+ EE + VI S +D +
Sbjct: 665 VLGEKDEILHEAQAKVDNVIKQFRRG-LITE-----EERYDRVI-SIWSNAKDVIQGKLM 717
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+ L+ N +M+ SG++G+ N +Q+ G A R+
Sbjct: 718 KSLNKRNPIFMMSDSGARGNASNFTQLAGMRGLMANPSGRI 758
>UNIPROTKB|P37871 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0046677
GO:GO:0006351 EMBL:AL009126 GenomeReviews:AL009126_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
EMBL:D64127 EMBL:L24376 KO:K03046 ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 HOGENOM:HOG000218387 EMBL:L43593 PIR:G69698
RefSeq:NP_387989.2 ProteinModelPortal:P37871 SMR:P37871
DIP:DIP-49022N IntAct:P37871 PRIDE:P37871
EnsemblBacteria:EBBACT00000003012 GeneID:935977 KEGG:bsu:BSU01080
PATRIC:18971725 GenoList:BSU01080 BioCyc:BSUB:BSU01080-MONOMER
Uniprot:P37871
Length = 1199
Score = 153 (58.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 35/89 (39%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
++Q + LQ I++ G P+ + L LKGKQGRFR NL GKRVD++
Sbjct: 280 IVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI P+L++YQ G+P+ +A L P
Sbjct: 340 GRSVIVVGPHLKMYQCGLPKEMALELFKP 368
Score = 63 (27.2 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 27/101 (26%), Positives = 45/101 (44%)
Query: 114 LLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
+L K+ +L E SK + ++ G L T+ EE E VI S +D +
Sbjct: 665 VLDDKQEILEEAQSKVDNVMKQFRRG-LITE-----EERYERVI-SIWSAAKDVIQGKLM 717
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
+ L N +M+ SG++G+ N +Q+ G A R+
Sbjct: 718 KSLDELNPIYMMSDSGARGNASNFTQLAGMRGLMANPAGRI 758
>TIGR_CMR|CPS_4768 [details] [associations]
symbol:CPS_4768 "DNA-directed RNA polymerase, beta'
subunit" species:167879 "Colwellia psychrerythraea 34H" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000083 GenomeReviews:CP000083_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_271412.1 ProteinModelPortal:Q47UW0
SMR:Q47UW0 STRING:Q47UW0 PRIDE:Q47UW0 GeneID:3519900
KEGG:cps:CPS_4768 PATRIC:21472353
BioCyc:CPSY167879:GI48-4774-MONOMER Uniprot:Q47UW0
Length = 1406
Score = 143 (55.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ +++ G + K + L +KGKQGRFR NL GKRVD++
Sbjct: 291 IVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI+ P L+++Q G+P+ +A L P
Sbjct: 351 GRSVITVGPTLKLHQCGLPKKMALELFKP 379
Score = 55 (24.4 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 21/81 (25%), Positives = 36/81 (44%)
Query: 130 EGYIRAMESGRLQTQPGCSAEETLEAVILKELS--VIRDHAGKACLQELHPSNGPLVMAL 187
+G + A E SA E + ++ LS ++ + G+ ++E N +MA
Sbjct: 670 QGLVTAGEKYNKVIDIWSSANEKVSKAMMDNLSKEMVMNRDGE--MEEQDSFNSIFMMAD 727
Query: 188 SGSKGSFINISQMIACVGQQA 208
SG++GS I Q+ G A
Sbjct: 728 SGARGSAAQIRQLAGMRGLMA 748
>TIGR_CMR|NSE_0677 [details] [associations]
symbol:NSE_0677 "DNA-directed RNA polymerase, beta'
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 TIGRFAMs:TIGR02386 OMA:VIAEWDP
RefSeq:YP_506555.1 ProteinModelPortal:Q2GD91 SMR:Q2GD91
STRING:Q2GD91 PRIDE:Q2GD91 GeneID:3931848 KEGG:nse:NSE_0677
PATRIC:22681373 BioCyc:NSEN222891:GHFU-691-MONOMER Uniprot:Q2GD91
Length = 1375
Score = 143 (55.4 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 32/76 (42%), Positives = 46/76 (60%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQI 73
ALF N + + + K + + LKGKQGRFR NL GKRVD++ R+VI P L++
Sbjct: 306 ALFDNGRRAKV-IKGSNKRPYKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPALEL 364
Query: 74 YQVGIPEHVAKILTYP 89
+Q G+P+ +A L P
Sbjct: 365 HQCGLPKKIALELFKP 380
Score = 54 (24.1 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAI-NGKRVPN 216
N +MA SG++GS I Q+ G A +G+ +PN
Sbjct: 703 NSIFMMAQSGARGSAAQIKQLAGMRGLMAKPSGEIIPN 740
>UNIPROTKB|P0A674 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0040007 "growth" evidence=IMP] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 GO:GO:0006351 EMBL:BX842574
Gene3D:2.40.40.20 InterPro:IPR009010 DrugBank:DB01045 GO:GO:0003899
eggNOG:COG0086 EMBL:L27989 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G70535
RefSeq:NP_215182.1 RefSeq:NP_335108.1 RefSeq:YP_006514010.1
ProteinModelPortal:P0A674 SMR:P0A674 IntAct:P0A674 PRIDE:P0A674
EnsemblBacteria:EBMYCT00000001410 EnsemblBacteria:EBMYCT00000072799
GeneID:13318555 GeneID:888177 GeneID:925980 KEGG:mtc:MT0696
KEGG:mtu:Rv0668 KEGG:mtv:RVBD_0668 PATRIC:18123251
TubercuList:Rv0668 DrugBank:DB01201 Uniprot:P0A674
Length = 1316
Score = 142 (55.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQI 73
ALF N G P+ + L LKGKQGRFR NL GKRVD++ R+VI P L++
Sbjct: 380 ALFDNGRR-GRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGKRVDYSGRSVIVVGPQLKL 438
Query: 74 YQVGIPEHVAKILTYP 89
+Q G+P+ +A L P
Sbjct: 439 HQCGLPKLMALELFKP 454
Score = 53 (23.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 142 QTQPGC-SAEETLEAV--ILKELSVIRDHAGKACLQELHPSNGPLVMAL-SGSKGSF 194
Q Q G + +E EA+ I KE + D G+A L+E +P + P++ + SG+ G+F
Sbjct: 759 QFQRGALNHDERNEALVEIWKEAT---DEVGQA-LREHYPDDNPIITIVDSGATGNF 811
>TIGR_CMR|APH_1023 [details] [associations]
symbol:APH_1023 "DNA-directed RNA polymerase, beta'
subunit" species:212042 "Anaplasma phagocytophilum HZ" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 RefSeq:YP_505582.1 ProteinModelPortal:Q2GJ69
STRING:Q2GJ69 PRIDE:Q2GJ69 GeneID:3930013 KEGG:aph:APH_1023
PATRIC:20950796 HOGENOM:HOG000218386 OMA:DINDKHI
ProtClustDB:PRK00566 BioCyc:APHA212042:GHPM-1030-MONOMER
TIGRFAMs:TIGR02386 Uniprot:Q2GJ69
Length = 1409
Score = 151 (58.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 37/90 (41%), Positives = 53/90 (58%)
Query: 1 MIQEDWEWLQLHC-ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI+ + LQ ALF +S S + + + L LKGKQGRFR NL GKRVD+
Sbjct: 291 MIRNEKRMLQEAVDALFDSSRRSYVSSRVGSMGYKKSLSDMLKGKQGRFRQNLLGKRVDY 350
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYP 89
+ R+VI P+L+++Q G+P+ +A L P
Sbjct: 351 SGRSVIVVGPSLKLHQCGLPKKMALELFKP 380
Score = 42 (19.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNG 217
N +MA SG++GS SQM G + + K P+G
Sbjct: 711 NSIYMMANSGARGS---ASQMKQLAGMRGLMAK--PSG 743
>TIGR_CMR|SPO_3507 [details] [associations]
symbol:SPO_3507 "DNA-directed RNA polymerase, beta'
subunit" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000345
"cytosolic DNA-directed RNA polymerase complex" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_168702.1 ProteinModelPortal:Q5LMQ6
SMR:Q5LMQ6 PRIDE:Q5LMQ6 GeneID:3196349 KEGG:sil:SPO3507
PATRIC:23380483 Uniprot:Q5LMQ6
Length = 1413
Score = 146 (56.5 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQI 73
ALF N + + K + L LKGKQGRFR NL GKRVDF+ R+VI P L++
Sbjct: 308 ALFDNGRRGRV-ITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKL 366
Query: 74 YQVGIPEHVAKILTYP 89
+Q G+P+ +A L P
Sbjct: 367 HQCGLPKKMALELFKP 382
Score = 47 (21.6 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSK 231
N +MA SG++GS ++QM G + + K PNG D P F +
Sbjct: 717 NSVYMMAHSGARGS---VTQMKQLGGMRGLMAK--PNG-DIIETPIISNFKE 762
>TIGR_CMR|ECH_0951 [details] [associations]
symbol:ECH_0951 "DNA-directed RNA polymerase, beta'
subunit" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:YP_507739.1 ProteinModelPortal:Q2GFP4
STRING:Q2GFP4 PRIDE:Q2GFP4 GeneID:3927754 KEGG:ech:ECH_0951
PATRIC:20577284 BioCyc:ECHA205920:GJNR-954-MONOMER Uniprot:Q2GFP4
Length = 1410
Score = 149 (57.5 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 37/90 (41%), Positives = 52/90 (57%)
Query: 1 MIQEDWEWLQLHC-ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI+ + LQ ALF ++ S + + L LKGKQGRFR NL GKRVD+
Sbjct: 291 MIRNEKRMLQEAVDALFDSTRRSYVSNKAGSVGYKKSLSDMLKGKQGRFRQNLLGKRVDY 350
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYP 89
+ R+VI PNL+++Q G+P+ +A L P
Sbjct: 351 SGRSVIVVGPNLKLHQCGLPKKMALELFKP 380
Score = 42 (19.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNG 217
N +MA SG++GS SQM G + + K P+G
Sbjct: 716 NSIYMMAHSGARGS---ASQMKQLAGMRGLMAK--PSG 748
>TIGR_CMR|SO_0225 [details] [associations]
symbol:SO_0225 "DNA-directed RNA polymerase, beta subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE014299 GenomeReviews:AE014299_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_715865.1 ProteinModelPortal:Q8EK73
SMR:Q8EK73 PRIDE:Q8EK73 GeneID:1168108 KEGG:son:SO_0225
PATRIC:23520143 Uniprot:Q8EK73
Length = 1405
Score = 143 (55.4 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ +++ G + K + L +KGKQGRFR NL GKRVD++
Sbjct: 291 IVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI+ P L+++Q G+P+ +A L P
Sbjct: 351 GRSVITVGPTLRLHQCGLPKKMALELFKP 379
Score = 48 (22.0 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 18/62 (29%), Positives = 29/62 (46%)
Query: 148 SAEETLEAVILKELSVIRDHAGKACLQELHPS-NGPLVMALSGSKGSFINISQMIACVGQ 206
SA E + +++ LS + ++E S N +MA SG++GS I Q+ G
Sbjct: 688 SANEKVSKAMMENLST-ETVINRDGVEEKQASFNSIYMMADSGARGSAAQIRQLAGMRGL 746
Query: 207 QA 208
A
Sbjct: 747 MA 748
>TIGR_CMR|CHY_2317 [details] [associations]
symbol:CHY_2317 "DNA-directed RNA polymerase, beta'
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 InterPro:IPR012756
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899
eggNOG:COG0086 KO:K03046 TIGRFAMs:TIGR02388 OMA:DINDKHI
ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 HOGENOM:HOG000218387
RefSeq:YP_361126.1 ProteinModelPortal:Q3A9Q8 SMR:Q3A9Q8
STRING:Q3A9Q8 PRIDE:Q3A9Q8 GeneID:3727667 KEGG:chy:CHY_2317
PATRIC:21277703 BioCyc:CHYD246194:GJCN-2316-MONOMER Uniprot:Q3A9Q8
Length = 1152
Score = 144 (55.7 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 33/89 (37%), Positives = 50/89 (56%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ I++ G P+ + L LKGKQGRFR NL GKRVD++
Sbjct: 280 IVRNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYS 339
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI P L+++Q G+P+ +A L P
Sbjct: 340 GRSVIVVGPELKLHQCGLPKEMALELFKP 368
Score = 41 (19.5 bits), Expect = 8.0e-06, Sum P(2) = 8.0e-06
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 170 KACLQELHPS--NGPLVMALSGSKGSFINISQMIACVGQQAINGKRV 214
K ++ L S N +MA SG++G+ I Q+ G A R+
Sbjct: 673 KKLVETLEASQFNHVYMMAKSGARGNIQQIRQLAGMRGLMADPSGRI 719
>TIGR_CMR|DET_0604 [details] [associations]
symbol:DET_0604 "DNA-directed RNA polymerase, beta'
subunit" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0000345 "cytosolic DNA-directed RNA polymerase complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
GO:GO:0006351 EMBL:CP000027 GenomeReviews:CP000027_GR
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
HOGENOM:HOG000218387 RefSeq:YP_181346.1 ProteinModelPortal:Q3Z8V3
SMR:Q3Z8V3 STRING:Q3Z8V3 PRIDE:Q3Z8V3 GeneID:3230059
KEGG:det:DET0604 PATRIC:21608279 BioCyc:DETH243164:GJNF-605-MONOMER
Uniprot:Q3Z8V3
Length = 1295
Score = 144 (55.7 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 35/100 (35%), Positives = 56/100 (56%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+I+ + LQ I++ G + + K++ L L+GKQGRFR NL GKRVD++
Sbjct: 347 IIRNEKRMLQEAVDSLIDNGRRGKSVAVNGDHKAKSLSDLLRGKQGRFRQNLLGKRVDYS 406
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHL 100
R+VI P+L++ Q G+P +A L P +H ++ L
Sbjct: 407 GRSVIVVGPSLKLSQCGLPRRMALELFKPFVMHRLVRDGL 446
Score = 42 (19.8 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 184 VMALSGSKGSFINISQMIACVG 205
+MA SG+KG+ I QM G
Sbjct: 751 MMANSGAKGNISQIRQMAGLRG 772
Score = 39 (18.8 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 321 TGKQIFSLILKP-----NRDCPVNANLKTKGRAY 349
TG+ IF+ +L N D P +A K GR Y
Sbjct: 618 TGRIIFNDVLPKEVEFQNMDIPKSAIKKIIGRCY 651
>UNIPROTKB|Q9KV29 [details] [associations]
symbol:rpoC "DNA-directed RNA polymerase subunit beta'"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=ISS]
HAMAP:MF_01322 InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 InterPro:IPR007081
InterPro:IPR007083 InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006351
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086
KO:K03046 OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
PIR:G82336 RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 141 (54.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ +++ G + K + L +KGKQGRFR NL GKRVD++
Sbjct: 291 IVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI+ P L+++Q G+P+ +A L P
Sbjct: 351 GRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 43 (20.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 174 QELHPS-NGPLVMALSGSKGSFINISQMIACVGQQA 208
QE S N +MA SG++GS I Q+ G A
Sbjct: 713 QEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748
>TIGR_CMR|VC_0329 [details] [associations]
symbol:VC_0329 "DNA-directed RNA polymerase, beta' subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006351 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 PIR:G82336
RefSeq:NP_229983.1 ProteinModelPortal:Q9KV29 SMR:Q9KV29
PRIDE:Q9KV29 DNASU:2615095 GeneID:2615095 KEGG:vch:VC0329
PATRIC:20079715 Uniprot:Q9KV29
Length = 1401
Score = 141 (54.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ +++ G + K + L +KGKQGRFR NL GKRVD++
Sbjct: 291 IVRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI+ P L+++Q G+P+ +A L P
Sbjct: 351 GRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 43 (20.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 174 QELHPS-NGPLVMALSGSKGSFINISQMIACVGQQA 208
QE S N +MA SG++GS I Q+ G A
Sbjct: 713 QEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMA 748
>TIGR_CMR|CJE_0529 [details] [associations]
symbol:CJE_0529 "DNA-directed RNA polymerase, beta'
subunit" species:195099 "Campylobacter jejuni RM1221" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:CP000025 GenomeReviews:CP000025_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 ProtClustDB:PRK00566 TIGRFAMs:TIGR02386
RefSeq:YP_178547.1 ProteinModelPortal:Q5HVY8 SMR:Q5HVY8
STRING:Q5HVY8 GeneID:3231290 KEGG:cjr:CJE0529 PATRIC:20042780
OMA:VIAEWDP BioCyc:CJEJ195099:GJC0-544-MONOMER Uniprot:Q5HVY8
Length = 1517
Score = 135 (52.6 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 33/76 (43%), Positives = 44/76 (57%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQI 73
ALF N + K + L + +KGKQGRFR NL GKRVDF+ R+VI P L++
Sbjct: 327 ALFDNGRRANAVKGAN-KRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRM 385
Query: 74 YQVGIPEHVAKILTYP 89
Q G+P+ +A L P
Sbjct: 386 DQCGLPKKMALELFKP 401
Score = 48 (22.0 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVG 205
N +MA SG++GS ISQ+ A G
Sbjct: 718 NSIYMMADSGARGSAAQISQLAAMRG 743
>UNIPROTKB|P0A8T7 [details] [associations]
symbol:rpoC "RNA polymerase, beta' subunit" species:83333
"Escherichia coli K-12" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016020 "membrane" evidence=IDA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0005737 GO:GO:0016020
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006351 EMBL:U00006
Gene3D:2.40.40.20 InterPro:IPR009010 PDB:3IYD PDBsum:3IYD
GO:GO:0003899 EMBL:V00339 eggNOG:COG0086 PDB:3LU0 PDBsum:3LU0
EMBL:V00340 EMBL:M38293 EMBL:M38303 KO:K03046 HOGENOM:HOG000218386
OMA:DINDKHI ProtClustDB:PRK00566 TIGRFAMs:TIGR02386 EMBL:M38305
EMBL:M38288 PIR:A00695 RefSeq:NP_418415.1 RefSeq:YP_491473.1
PDB:2AUK PDB:2LMC PDBsum:2AUK PDBsum:2LMC ProteinModelPortal:P0A8T7
SMR:P0A8T7 DIP:DIP-35803N IntAct:P0A8T7 MINT:MINT-1220667
PhosSite:P010445 PaxDb:P0A8T7 PRIDE:P0A8T7
EnsemblBacteria:EBESCT00000001546 EnsemblBacteria:EBESCT00000001547
EnsemblBacteria:EBESCT00000001548 EnsemblBacteria:EBESCT00000018189
GeneID:12933965 GeneID:948487 KEGG:ecj:Y75_p3209 KEGG:eco:b3988
PATRIC:32123497 EchoBASE:EB0888 EcoGene:EG10895
BioCyc:EcoCyc:RPOC-MONOMER BioCyc:ECOL316407:JW3951-MONOMER
BioCyc:MetaCyc:RPOC-MONOMER EvolutionaryTrace:P0A8T7
Genevestigator:P0A8T7 Uniprot:P0A8T7
Length = 1407
Score = 140 (54.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
+++ + LQ +++ G + K + L +KGKQGRFR NL GKRVD++
Sbjct: 291 IVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYS 350
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI+ P L+++Q G+P+ +A L P
Sbjct: 351 GRSVITVGPYLRLHQCGLPKKMALELFKP 379
Score = 41 (19.5 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 180 NGPLVMALSGSKGSFINISQMIACVGQQA 208
N +MA SG++GS I Q+ G A
Sbjct: 720 NSIYMMADSGARGSAAQIRQLAGMRGLMA 748
>TAIR|locus:2015163 [details] [associations]
symbol:NRPD1A "nuclear RNA polymerase D1A" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006346 "methylation-dependent chromatin silencing"
evidence=RCA;IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IGI;IMP] [GO:0031047 "gene silencing by RNA"
evidence=RCA;IMP] [GO:0000418 "DNA-directed RNA polymerase IV
complex" evidence=IDA;IPI] [GO:0007267 "cell-cell signaling"
evidence=RCA;IMP] [GO:0016246 "RNA interference" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0010495
"long-distance posttranscriptional gene silencing" evidence=IMP]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] InterPro:IPR000722
InterPro:IPR006592 InterPro:IPR007066 InterPro:IPR007080
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015801
Pfam:PF00623 Pfam:PF04983 Pfam:PF04997 Pfam:PF04998 Pfam:PF05000
SMART:SM00663 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC011000
GO:GO:0003677 GO:GO:0007267 GO:GO:0006351 GO:GO:0005507
GO:GO:0048038 GO:GO:0009308 Gene3D:3.10.450.40 GO:GO:0030422
Gene3D:2.40.40.20 InterPro:IPR009010 GO:GO:0003899 GO:GO:0006346
EMBL:AC010795 EMBL:AY826515 EMBL:DQ020657 IPI:IPI00523111
PIR:D96655 RefSeq:NP_001185298.1 RefSeq:NP_176490.2
UniGene:At.36192 ProteinModelPortal:Q9LQ02 SMR:Q9LQ02
DIP:DIP-48679N STRING:Q9LQ02 PaxDb:Q9LQ02 PRIDE:Q9LQ02
EnsemblPlants:AT1G63020.1 EnsemblPlants:AT1G63020.2 GeneID:842605
KEGG:ath:AT1G63020 TAIR:At1g63020 eggNOG:COG0086
HOGENOM:HOG000083760 InParanoid:Q9LQ02 KO:K16250 OMA:HQHSLIA
PhylomeDB:Q9LQ02 ProtClustDB:CLSN2680546 Genevestigator:Q9LQ02
GO:GO:0000418 GO:GO:0010495 InterPro:IPR021602 Pfam:PF11523
Uniprot:Q9LQ02
Length = 1453
Score = 119 (46.9 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 52 LSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHL 100
L GKR D T RTV+ DP+L++ ++GIPE +AK L E ++ NKE L
Sbjct: 313 LLGKRSDHTFRTVVVGDPSLKLNEIGIPESIAKRLQVSEHLNQCNKERL 361
Score = 57 (25.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 179 SNGPLVMALSGSKGSFINISQMIACVGQQ 207
SN L+M+ +GSKG+ + Q C+G Q
Sbjct: 722 SNSFLIMSKAGSKGNIGKLVQHSMCIGLQ 750
Score = 54 (24.1 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 320 WTGKQIFSLILKPNRDC--PVNANLKTKGRAYTF 351
WTG Q+F ++ P D P+N + + G +F
Sbjct: 541 WTGMQLFGMLFPPGFDYTYPLNNVVVSNGELLSF 574
>UNIPROTKB|P0C504 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4530 "Oryza sativa" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 EMBL:AY522331 Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 HAMAP:MF_01323 ProteinModelPortal:P0C504
Gramene:P0C504 HOGENOM:HOG000054284 Genevestigator:P0C504
Uniprot:P0C504
Length = 682
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 17 INSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQV 76
++S + G P + L ++GK+GRFR L GKRVD++ R+VI P+L ++Q
Sbjct: 336 LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQC 395
Query: 77 GIPEHVA 83
G+P +A
Sbjct: 396 GLPLEIA 402
>UNIPROTKB|P0C505 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39946 "Oryza sativa Indica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:AY522329 Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 ProtClustDB:CHL00018
HAMAP:MF_01323 RefSeq:YP_654207.2 ProteinModelPortal:P0C505
GeneID:4126923 Gramene:P0C505 Uniprot:P0C505
Length = 682
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 17 INSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQV 76
++S + G P + L ++GK+GRFR L GKRVD++ R+VI P+L ++Q
Sbjct: 336 LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQC 395
Query: 77 GIPEHVA 83
G+P +A
Sbjct: 396 GLPLEIA 402
>UNIPROTKB|P0C506 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:39947 "Oryza sativa Japonica Group" [GO:0009536 "plastid"
evidence=IC] InterPro:IPR000722 InterPro:IPR006592
InterPro:IPR007066 InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983
Pfam:PF04997 SMART:SM00663 GO:GO:0009507 GO:GO:0009536
GO:GO:0003677 GO:GO:0006351 EMBL:X15901 EMBL:AY522330
GenomeReviews:AY522330_GR Gene3D:2.40.40.20 InterPro:IPR009010
GO:GO:0003899 eggNOG:COG0086 ProtClustDB:CHL00018 HAMAP:MF_01323
PIR:JQ0214 RefSeq:NP_039374.1 ProteinModelPortal:P0C506
STRING:P0C506 EnsemblPlants:LOC_Osp1g00250.1 GeneID:3131433
KEGG:osa:3131433 Gramene:P0C506 KO:K03046 OMA:VIDNFIA
Uniprot:P0C506
Length = 682
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 17 INSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQV 76
++S + G P + L ++GK+GRFR L GKRVD++ R+VI P+L ++Q
Sbjct: 336 LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQC 395
Query: 77 GIPEHVA 83
G+P +A
Sbjct: 396 GLPLEIA 402
>UNIPROTKB|Q6ENI3 [details] [associations]
symbol:rpoC1 "DNA-directed RNA polymerase subunit beta'"
species:4536 "Oryza nivara" [GO:0009536 "plastid" evidence=IC]
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
SMART:SM00663 GO:GO:0009507 GO:GO:0009536 GO:GO:0003677
GO:GO:0006351 Gene3D:2.40.40.20 InterPro:IPR009010 EMBL:AP006728
GO:GO:0003899 RefSeq:YP_052740.1 ProteinModelPortal:Q6ENI3
GeneID:2885900 Gramene:Q6ENI3 ProtClustDB:CHL00018 HAMAP:MF_01323
Uniprot:Q6ENI3
Length = 682
Score = 120 (47.3 bits), Expect = 0.00050, P = 0.00050
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 17 INSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQV 76
++S + G P + L ++GK+GRFR L GKRVD++ R+VI P+L ++Q
Sbjct: 336 LDSGSRGQPTRDGHNKVYKSLSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHQC 395
Query: 77 GIPEHVA 83
G+P +A
Sbjct: 396 GLPLEIA 402
>TIGR_CMR|CBU_0232 [details] [associations]
symbol:CBU_0232 "DNA-directed RNA polymerase beta'
subunit" species:227377 "Coxiella burnetii RSA 493" [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS] HAMAP:MF_01322
InterPro:IPR000722 InterPro:IPR006592 InterPro:IPR007066
InterPro:IPR007080 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR012754 Pfam:PF00623 Pfam:PF04983 Pfam:PF04997
Pfam:PF04998 Pfam:PF05000 SMART:SM00663 GO:GO:0003677 GO:GO:0006351
EMBL:AE016828 GenomeReviews:AE016828_GR Gene3D:2.40.40.20
InterPro:IPR009010 GO:GO:0003899 eggNOG:COG0086 KO:K03046
HOGENOM:HOG000218386 OMA:DINDKHI ProtClustDB:PRK00566
TIGRFAMs:TIGR02386 RefSeq:NP_819276.1 ProteinModelPortal:Q83ET0
SMR:Q83ET0 PRIDE:Q83ET0 GeneID:1208113 KEGG:cbu:CBU_0232
PATRIC:17929155 BioCyc:CBUR227377:GJ7S-238-MONOMER Uniprot:Q83ET0
Length = 1414
Score = 132 (51.5 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 35 RGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYP 89
+ L +KGK GRFR NL GKRVD++ R+VI P L+++Q G+P+ +A L P
Sbjct: 325 KSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLKLHQAGLPKKMALELFKP 379
Score = 38 (18.4 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 157 ILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAI 209
IL+E S+ R A E + ++G +N+ + I V Q+I
Sbjct: 871 ILEEHSIDRVRVRSAITCEARYGICSMCYGRDLARGHVVNVGEAIGVVAAQSI 923
>UNIPROTKB|H9L2Z1 [details] [associations]
symbol:H9L2Z1 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR007066 InterPro:IPR007081 InterPro:IPR007083
InterPro:IPR015699 Pfam:PF04983 Pfam:PF04998 Pfam:PF05000
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036064 Uniprot:H9L2Z1
Length = 522
Score = 116 (45.9 bits), Expect = 0.00095, P = 0.00094
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 139 GRLQTQPGCSAEETLEAVILK---ELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSK 191
G+ Q C + V LK E++ + K C+ LH P N +M SG+K
Sbjct: 228 GKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGAK 287
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
GS +N Q+ +GQ + G+R P +SLP F + P+S G V +FL
Sbjct: 288 GSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFL 340
>UNIPROTKB|H9L2Z2 [details] [associations]
symbol:H9L2Z2 "DNA-directed RNA polymerase" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008811 "chloramphenicol O-acetyltransferase activity"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] InterPro:IPR001707 InterPro:IPR007066
InterPro:IPR007081 InterPro:IPR007083 InterPro:IPR015699
Pfam:PF04983 Pfam:PF04998 Pfam:PF05000 ProDom:PD002660
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 PANTHER:PTHR19376:SF11 GeneTree:ENSGT00550000074861
GO:GO:0008811 EMBL:AADN02030152 EMBL:AADN02030153 EMBL:AADN02030154
Ensembl:ENSGALT00000036065 Uniprot:H9L2Z2
Length = 527
Score = 116 (45.9 bits), Expect = 0.00096, P = 0.00096
Identities = 36/113 (31%), Positives = 53/113 (46%)
Query: 139 GRLQTQPGCSAEETLEAVILK---ELSVIRDHAGKACLQ-ELH---PSNGPLVMALSGSK 191
G+ Q C + V LK E++ + K C+ LH P N +M SG+K
Sbjct: 235 GKWQDAHLCKDQRDFNMVDLKFKEEVNNYNNEVNKVCMPFGLHRSFPENNLQLMVQSGAK 294
Query: 192 GSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKGNV--KFL 242
GS +N Q+ +GQ + G+R P +SLP F + P+S G V +FL
Sbjct: 295 GSTVNTVQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPSSGGFVTGRFL 347
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.134 0.402 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 409 388 0.00093 117 3 11 22 0.41 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 79
No. of states in DFA: 616 (65 KB)
Total size of DFA: 257 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 30.81u 0.09s 30.90t Elapsed: 00:00:59
Total cpu time: 30.82u 0.09s 30.91t Elapsed: 00:01:00
Start: Thu Aug 15 13:18:32 2013 End: Thu Aug 15 13:19:32 2013