RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13848
(409 letters)
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 174 bits (443), Expect = 9e-48
Identities = 66/117 (56%), Positives = 85/117 (72%), Gaps = 7/117 (5%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS----RGLIQRLKGKQGRFRGNLSGKR 56
+I++ WE LQ H + ++E GIP + +S + L QRLKGK+GRFRGNLSGKR
Sbjct: 263 IIEDLWELLQYHVTTYFDNEIPGIP---PARHRSGRPLKTLAQRLKGKEGRFRGNLSGKR 319
Query: 57 VDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
V+F++RTVISPDPNL I +VG+PE +AK LT PERV N E L++ VLNGP+KHPG
Sbjct: 320 VNFSARTVISPDPNLSINEVGVPEAIAKELTVPERVTEWNIEELREYVLNGPEKHPG 376
Score = 125 bits (317), Expect = 3e-31
Identities = 49/127 (38%), Positives = 77/127 (60%), Gaps = 3/127 (2%)
Query: 117 AKER---LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACL 173
AKE ++ E + E I A E+G L+ PG + EETLE I++ L RD AG+
Sbjct: 658 AKEEIDEIIEEAEKRVEELIEAYENGELEPLPGRTLEETLEMKIMQVLGKARDEAGEIAE 717
Query: 174 QELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDP 233
+ L N ++MA +G++GS +N++QM ACVGQQ++ G+R+ G+ +R+LPHF
Sbjct: 718 KYLGLDNPAVIMARTGARGSMLNLTQMAACVGQQSVRGERIRRGYRDRTLPHFKPGDLGA 777
Query: 234 ASKGNVK 240
++G V+
Sbjct: 778 EARGFVR 784
Score = 44.8 bits (107), Expect = 6e-05
Identities = 15/23 (65%), Positives = 15/23 (65%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
P PAI K WTGKQIFSL L
Sbjct: 536 EPEPAIENGKPYWTGKQIFSLFL 558
>gnl|CDD|214767 smart00663, RPOLA_N, RNA polymerase I subunit A N-terminus.
Length = 295
Score = 156 bits (397), Expect = 1e-44
Identities = 54/124 (43%), Positives = 81/124 (65%), Gaps = 3/124 (2%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
+I+ + LQ I++E G+P Q + + L QRLKGK+GRFR NL GKRVDF
Sbjct: 57 IIRNEKRLLQEAVDTLIDNE--GLPRANQKSGRPLKSLSQRLKGKEGRFRQNLLGKRVDF 114
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKE 119
++R+VI+PDPNL++ +VG+P+ +A LT+PE V N + L++LV NGP+ ++R K+
Sbjct: 115 SARSVITPDPNLKLNEVGVPKEIALELTFPEIVTPLNIDKLRKLVRNGPNGAKYIIRGKK 174
Query: 120 RLLS 123
L
Sbjct: 175 TNLK 178
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 156 bits (397), Expect = 1e-41
Identities = 63/114 (55%), Positives = 82/114 (71%), Gaps = 1/114 (0%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIP-LNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
+I++ WE LQ H A + ++E GIP + + L QRLKGK+GRFRGNLSGKRV+F
Sbjct: 259 IIEDLWELLQYHVATYFDNELPGIPPARHRSGRPLKTLAQRLKGKEGRFRGNLSGKRVNF 318
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
++RTVISPDPN+ I +VG+PE +AK LT PERV N + L++ VLNGPD PG
Sbjct: 319 SARTVISPDPNISINEVGVPEQIAKELTVPERVTPWNIDELREYVLNGPDSWPG 372
Score = 121 bits (306), Expect = 7e-30
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 3/128 (2%)
Query: 116 RAKER---LLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKAC 172
AKE L+ + + + I +G L+ PG + EETLE I++ L RD AG+
Sbjct: 651 EAKEEIEELIEKAEKRVDNLIERYRNGELEPLPGRTVEETLEMKIMEVLGKARDEAGEVA 710
Query: 173 LQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKD 232
+ L P N ++MA +G++GS +NI+QM A VGQQ++ G R+ G+ NR+LPHF K
Sbjct: 711 EKYLDPENHAVIMARTGARGSLLNITQMAAMVGQQSVRGGRIRRGYRNRTLPHFKKGDIG 770
Query: 233 PASKGNVK 240
++G V+
Sbjct: 771 AKARGFVR 778
Score = 40.5 bits (95), Expect = 0.002
Identities = 16/23 (69%), Positives = 16/23 (69%)
Query: 308 IPPPAIMKPKALWTGKQIFSLIL 330
P PAI KPK WTGKQIFS L
Sbjct: 531 PPEPAIEKPKEYWTGKQIFSAFL 553
>gnl|CDD|218372 pfam05000, RNA_pol_Rpb1_4, RNA polymerase Rpb1, domain 4. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 4, represents the funnel domain. The
funnel contain the binding site for some elongation
factors.
Length = 108
Score = 136 bits (345), Expect = 1e-39
Identities = 48/99 (48%), Positives = 63/99 (63%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
G+L+ G + EET EA+I L+ RD AG + L P+N +MA SG+KGS INIS
Sbjct: 8 GKLEDIWGMTLEETFEALINNILNKARDPAGNIASKSLDPNNSIYMMADSGAKGSIINIS 67
Query: 199 QMIACVGQQAINGKRVPNGFDNRSLPHFDKFSKDPASKG 237
Q+ C GQQ + GKR+P GF R+LPHF K + P S+G
Sbjct: 68 QIAGCRGQQNVEGKRIPFGFSGRTLPHFKKDDEGPESRG 106
>gnl|CDD|184940 PRK14977, PRK14977, bifunctional DNA-directed RNA polymerase A'/A''
subunit; Provisional.
Length = 1321
Score = 146 bits (369), Expect = 4e-38
Identities = 59/115 (51%), Positives = 82/115 (71%), Gaps = 2/115 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS--RGLIQRLKGKQGRFRGNLSGKRVD 58
+++++ + LQ H + F ++ T+GIP S + L QRLKGK+GRFRGNL GKRVD
Sbjct: 272 IVEDEVDHLQYHTSTFFDNATAGIPQAHHKGSGRPLKSLFQRLKGKEGRFRGNLIGKRVD 331
Query: 59 FTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
F++RTVISPDP + I +VG+PE +A LT PE V+ N E +K+LV+NGPD+ PG
Sbjct: 332 FSARTVISPDPMIDIDEVGVPEAIAMKLTIPEIVNENNIEKMKELVINGPDEFPG 386
Score = 66.2 bits (161), Expect = 1e-11
Identities = 36/110 (32%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQELHPSNGPLVMALSGSKGSFINIS 198
G+ + G EE LEA I+ EL RD AG + + N +MA +G++GS N++
Sbjct: 711 GKEELLRGMKEEEALEADIVNELDKARDKAGSSANDCIDADNAGKIMAKTGARGSMANLA 770
Query: 199 QMIACVGQQAI--------NGKRVPNGFDNRSLPHFDKFSKDPASKGNVK 240
Q+ +GQQ G R+ G+ +R+L HF + +P + G VK
Sbjct: 771 QIAGALGQQKRKTRIGFVLTGGRLHEGYKDRALSHFQEGDDNPDAHGFVK 820
Score = 34.2 bits (78), Expect = 0.14
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 308 IPPPAI-MKPKALWTGKQIFSLIL 330
+P PAI K WTGKQ+FSL L
Sbjct: 551 LPEPAIKTKDGPAWTGKQLFSLFL 574
>gnl|CDD|223164 COG0086, RpoC, DNA-directed RNA polymerase, beta' subunit/160 kD
subunit [Transcription].
Length = 808
Score = 126 bits (320), Expect = 1e-31
Identities = 39/101 (38%), Positives = 55/101 (54%), Gaps = 3/101 (2%)
Query: 2 IQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTS 61
++ + LQ ++ +P + L QRLKGKQGRFR NL GKRVD++
Sbjct: 238 VRNEKRMLQEAVDALFDNRRPRAVTGGRP---LKSLSQRLKGKQGRFRQNLLGKRVDYSG 294
Query: 62 RTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQ 102
R+VIS PNL++ Q G+P+ +A L P V N E L+
Sbjct: 295 RSVISVGPNLKLNQCGVPKKMALELFKPFVVTELNIEGLRT 335
Score = 84.2 bits (209), Expect = 2e-17
Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 6/132 (4%)
Query: 109 DKHPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHA 168
K K+ ++ E I E G L + E +E + ++ L
Sbjct: 591 RKDIEAEDEKDEIVIEAEGSVLKLILQYEEGDLTRTERNNIVEIIEVLGIEALRNAIIEE 650
Query: 169 GKACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDK 228
K L+E + + G G+ +NISQ++ +GQQ + G+++ + F+
Sbjct: 651 IKITLEEQGLD--FVDIRHMGLSGARMNISQIVQLIGQQGVMGEKISVL----ARAAFEV 704
Query: 229 FSKDPASKGNVK 240
K ++G +
Sbjct: 705 TVKHLEAEGPGE 716
Score = 34.9 bits (81), Expect = 0.087
Identities = 10/34 (29%), Positives = 12/34 (35%)
Query: 305 SVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPV 338
AI K L TGK I S I + +
Sbjct: 480 DDREKAEAIAKKIELTTGKVIVSTISPDLAELSI 513
>gnl|CDD|216030 pfam00623, RNA_pol_Rpb1_2, RNA polymerase Rpb1, domain 2. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 2, contains the active site. The
invariant motif -NADFDGD- binds the active site
magnesium ion.
Length = 165
Score = 105 bits (264), Expect = 4e-27
Identities = 32/60 (53%), Positives = 44/60 (73%)
Query: 54 GKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
GKRVDF+ R+VI+PDPNL++ +VG+P +A LT PE V N + L++LV NGP+ PG
Sbjct: 1 GKRVDFSGRSVITPDPNLKLDEVGVPIEMALELTKPEIVTKLNIKKLRKLVSNGPNVPPG 60
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 77.7 bits (192), Expect = 6e-16
Identities = 22/53 (41%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNL 52
+I+E+ LQ H A +++ G P +Q + + + QRLKGK+GRFRGNL
Sbjct: 278 IIREEKRLLQEHVATLFDNDIPGQPPALQKSGRPLKSISQRLKGKEGRFRGNL 330
>gnl|CDD|233840 TIGR02386, rpoC_TIGR, DNA-directed RNA polymerase, beta' subunit,
predominant form. Bacteria have a single DNA-directed
RNA polymerase, with required subunits that include
alpha, beta, and beta-prime. This model describes the
predominant architecture of the beta-prime subunit in
most bacteria. This model excludes from among the
bacterial mostly sequences from the cyanobacteria, where
RpoC is replaced by two tandem genes homologous to it
but also encoding an additional domain [Transcription,
DNA-dependent RNA polymerase].
Length = 1140
Score = 73.5 bits (181), Expect = 6e-14
Identities = 45/123 (36%), Positives = 62/123 (50%), Gaps = 20/123 (16%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQI 73
ALF N G P+ + + L LKGKQGRFR NL GKRVD++ R+VI P L++
Sbjct: 287 ALFDNGR-RGKPVVGKNNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKM 345
Query: 74 YQVGIPEHVAKILTYP-------ERVHHANKEHLKQLVLNGPDK-----------HPGLL 115
YQ G+P+ +A L P +R AN + K+++ + HP LL
Sbjct: 346 YQCGLPKKMALELFKPFIIKRLIDRELAANIKSAKKMIEQEDPEVWDVLEDVIKEHPVLL 405
Query: 116 -RA 117
RA
Sbjct: 406 NRA 408
>gnl|CDD|234794 PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta';
Provisional.
Length = 1156
Score = 70.5 bits (174), Expect = 6e-13
Identities = 24/39 (61%), Positives = 31/39 (79%)
Query: 41 LKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIP 79
LKGKQGRFR NL GKRVD++ R+VI P L+++Q G+P
Sbjct: 321 LKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLHQCGLP 359
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 68.4 bits (167), Expect = 3e-12
Identities = 36/89 (40%), Positives = 50/89 (56%), Gaps = 7/89 (7%)
Query: 1 MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
M+QE + +LF N G P+ + L LKGKQGRFR NL GKRVD++
Sbjct: 376 MLQEAVD------SLFDNGR-RGRPVTGPGNRPLKSLADMLKGKQGRFRQNLLGKRVDYS 428
Query: 61 SRTVISPDPNLQIYQVGIPEHVAKILTYP 89
R+VI P+L+++Q G+P +A L P
Sbjct: 429 GRSVIVVGPHLKLHQCGLPSAMALELFKP 457
>gnl|CDD|235055 PRK02625, rpoC1, DNA-directed RNA polymerase subunit gamma;
Provisional.
Length = 627
Score = 65.2 bits (159), Expect = 2e-11
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 41 LKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHL 100
++GKQGRFR NL GKRVD++ R+VI P L+++Q G+P+ +A L P +H ++ +
Sbjct: 339 IEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQGI 398
>gnl|CDD|131440 TIGR02387, rpoC1_cyan, DNA-directed RNA polymerase, gamma subunit.
The RNA polymerase gamma subunit, encoded by the rpoC1
gene, is found in cyanobacteria and corresponds to the
N-terminal region the beta' subunit, encoded by rpoC, in
other bacteria. The equivalent subunit in plastids and
chloroplasts is designated beta', while the product of
the rpoC2 gene is designated beta''.
Length = 619
Score = 63.5 bits (154), Expect = 8e-11
Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 7/77 (9%)
Query: 41 LKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHL 100
++GKQGRFR NL GKRVD++ R+VI P L+++Q G+P+ +A L P +H ++ +
Sbjct: 332 IEGKQGRFRQNLLGKRVDYSGRSVIVVGPKLKMHQCGLPKEMAIELFQPFVIHRLIRQGI 391
Query: 101 -------KQLVLNGPDK 110
K+L+ D+
Sbjct: 392 VNNIKAAKKLIQRADDE 408
>gnl|CDD|181983 PRK09603, PRK09603, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Reviewed.
Length = 2890
Score = 62.6 bits (152), Expect = 2e-10
Identities = 29/59 (49%), Positives = 41/59 (69%)
Query: 31 KSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQVGIPEHVAKILTYP 89
K + L + +KGKQGRFR NL GKRVDF+ R+VI PNL++ + G+P+++A L P
Sbjct: 1710 KRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPNLKMDECGLPKNMALELFKP 1768
>gnl|CDD|214336 CHL00018, rpoC1, RNA polymerase beta' subunit.
Length = 663
Score = 62.2 bits (152), Expect = 2e-10
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 16 FINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDFTSRTVISPDPNLQIYQ 75
+++ G P+ + ++GK+GRFR NL GKRVD++ R+VI P+L ++Q
Sbjct: 335 LLDNGIRGQPMRDGHNKPYKSFSDVIEGKEGRFRENLLGKRVDYSGRSVIVVGPSLSLHQ 394
Query: 76 VGIP 79
G+P
Sbjct: 395 CGLP 398
>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
beta/beta'; Provisional.
Length = 2836
Score = 59.6 bits (144), Expect = 2e-09
Identities = 35/90 (38%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MIQEDWEWLQLHC-ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
MI+ + LQ +LF NS + + + + LKGKQGRFR NL GKRVD+
Sbjct: 1723 MIRNEKRMLQEAVDSLFDNSRRNALVNKAGAVGYKKSISDMLKGKQGRFRQNLLGKRVDY 1782
Query: 60 TSRTVISPDPNLQIYQVGIPEHVAKILTYP 89
+ R+VI P L++ Q G+P+ +A L P
Sbjct: 1783 SGRSVIVVGPTLKLNQCGLPKRMALELFKP 1812
>gnl|CDD|218361 pfam04983, RNA_pol_Rpb1_3, RNA polymerase Rpb1, domain 3. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 3, represents the pore domain. The 3' end
of RNA is positioned close to this domain. The pore
delimited by this domain is thought to act as a channel
through which nucleotides enter the active site and/or
where the 3' end of the RNA may be extruded during
back-tracking.
Length = 158
Score = 46.5 bits (111), Expect = 3e-06
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 303 ETSVIIPPPAIMKP-KALWTGKQIFSLILK----PNRDCPVNANLKTKGRAYTF 351
+++P PAI+KP K LWTGKQ FS +L P N + +Y
Sbjct: 42 MYGIVLPHPAILKPIKPLWTGKQTFSRLLPNEINPKGKPKTNEETLCENDSYVL 95
>gnl|CDD|222480 pfam13968, DUF4220, Domain of unknown function (DUF4220). This
family is found in plants and is often associated with
DUF294, pfam04578.
Length = 362
Score = 31.9 bits (73), Expect = 0.63
Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 82 VAKILTYPERV---HHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAMES 138
V ++ Y ER+ A+ E ++ +L PD P + E + I
Sbjct: 96 VVGVIKYGERIWALRSASMESIRSSMLGEPDPGPNYAKFMEGYKYLVAEGLQAKIVIGRE 155
Query: 139 GRLQTQPGCSAEETLEAVILKELSVIRD 166
+ E L +ILK+ +D
Sbjct: 156 EDVDLNSVEQVWEQLLLIILKDGDEEKD 183
>gnl|CDD|99933 cd05501, Bromo_SP100C_like, Bromodomain, SP100C_like subfamily. The
SP100C protein is a splice variant of SP100, a major
component of PML-SP100 nuclear bodies (NBs), which are
poorly understood. It is covalently modified by SUMO-1
and may play a role in processes at the chromatin level.
Bromodomains are 110 amino acid long domains, that are
found in many chromatin associated proteins.
Bromodomains can interact specifically with acetylated
lysine.
Length = 102
Score = 27.0 bits (60), Expect = 6.5
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 84 KILTYPERVHHANKEHLKQLVLNGPDKHPGLLRAKERLLSEGYSKCEGYIRAM 136
K+ + +K + + G + L + KERL Y EG++R M
Sbjct: 13 KVYCMSKSGFFISKPYYIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDM 65
>gnl|CDD|180484 PRK06242, PRK06242, flavodoxin; Provisional.
Length = 150
Score = 27.6 bits (62), Expect = 7.5
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 14 ALFINSETSGIPLNMQPKSKSRGLIQRLKGKQGRFRGNLSGKRVDF 59
FI S TSG+P + L ++LK K G S K D
Sbjct: 76 KAFIFS-TSGLP----FLKYHKALKKKLKEKGFEIVGEFSCKGFDT 116
>gnl|CDD|140334 PTZ00313, PTZ00313, inosine-adenosine-guanosine-nucleoside
hydrolase; Provisional.
Length = 326
Score = 28.3 bits (63), Expect = 7.7
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 5/38 (13%)
Query: 76 VGIPEHVA---KILTYPERVHHANKEHLKQLVLNGPDK 110
+ IPEHVA K+ PE +E L LV++ P+K
Sbjct: 96 LNIPEHVAIWEKL--KPENEALVGEELLADLVMSSPEK 131
>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate
dehydrogenase; Provisional.
Length = 263
Score = 28.0 bits (63), Expect = 7.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 167 HAGKACLQELHPSNGPLVMALSGS 190
KA L L S G ++ LS S
Sbjct: 122 LGAKAALPALKASGGSMIFTLSNS 145
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.399
Gapped
Lambda K H
0.267 0.0824 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,443,395
Number of extensions: 1932126
Number of successful extensions: 1294
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1284
Number of HSP's successfully gapped: 34
Length of query: 409
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 310
Effective length of database: 6,546,556
Effective search space: 2029432360
Effective search space used: 2029432360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (26.7 bits)