RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy13848
         (409 letters)



>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score =  117 bits (294), Expect = 5e-29
 Identities = 58/113 (51%), Positives = 79/113 (69%), Gaps = 1/113 (0%)

Query: 2   IQEDWEWLQLHCALFINSETSGIPLNMQP-KSKSRGLIQRLKGKQGRFRGNLSGKRVDFT 60
           I+E    LQ H A +++++ +G P  +Q      + +  RLKGK+GR RGNL GKRVDF+
Sbjct: 288 IEEAESLLQFHVATYMDNDIAGQPQALQKSGRPVKSIRARLKGKEGRIRGNLMGKRVDFS 347

Query: 61  SRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNGPDKHPG 113
           +RTVIS DPNL++ QVG+P+ +AK LTYPE V   N + L QLV NGP++HPG
Sbjct: 348 ARTVISGDPNLELDQVGVPKSIAKTLTYPEVVTPYNIDRLTQLVRNGPNEHPG 400



 Score = 89.1 bits (220), Expect = 1e-19
 Identities = 48/129 (37%), Positives = 70/129 (54%)

Query: 111 HPGLLRAKERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGK 170
               +R     ++E   K     +  ++  L  + G +  E+ E  +++ L+  RD AG+
Sbjct: 671 DGPTMREITETIAEAKKKVLDVTKEAQANLLTAKHGMTLRESFEDNVVRFLNEARDKAGR 730

Query: 171 ACLQELHPSNGPLVMALSGSKGSFINISQMIACVGQQAINGKRVPNGFDNRSLPHFDKFS 230
                L   N    M ++GSKGSFINI+QM ACVGQQ++ GKR+  GF +R+LPHF K  
Sbjct: 731 LAEVNLKDLNNVKQMVMAGSKGSFINIAQMSACVGQQSVEGKRIAFGFVDRTLPHFSKDD 790

Query: 231 KDPASKGNV 239
             P SKG V
Sbjct: 791 YSPESKGFV 799



 Score = 32.9 bits (74), Expect = 0.084
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 297 LRFREHETSVIIPPPAIMKPKALWTGKQIFSLILKPNRDCPVNANLKTK 345
           + +   +   +IP PAI+KPK LW+GKQI S+ + PN       +  T 
Sbjct: 548 MLYWVPDWDGVIPTPAIIKPKPLWSGKQILSVAI-PNGIHLQRFDEGTT 595


>d1smyd_ e.29.1.2 (D:) RNA-polymerase beta-prime {Thermus
           thermophilus [TaxId: 274]}
          Length = 1504

 Score =  117 bits (294), Expect = 5e-29
 Identities = 34/108 (31%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 1   MIQEDWEWLQLHCALFINSETSGIPLNMQPKSKS-RGLIQRLKGKQGRFRGNLSGKRVDF 59
           +I+ +   LQ      +++   G P+      +  R L   L GKQGRFR NL GKRVD+
Sbjct: 565 IIRNEKRMLQEAVDALLDNGRRGAPVTNPGSDRPLRSLTDILSGKQGRFRQNLLGKRVDY 624

Query: 60  TSRTVISPDPNLQIYQVGIPEHVAKILTYPERVHHANKEHLKQLVLNG 107
           + R+VI   P L+++Q G+P+ +A  L  P  +    ++ +   V   
Sbjct: 625 SGRSVIVVGPQLKLHQCGLPKRMALELFKPFLLKKMEEKGIAPNVKAA 672



 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 119  ERLLSEGYSKCEGYIRAMESGRLQTQPGCSAEETLEAVILKELSVIRDHAGKACLQEL-- 176
            ++ L E   K     +A E G L  +            IL+  +   +   +A  +    
Sbjct: 960  KQYLEEADRKLLQIEQAYEMGFLTDRERYDQ-------ILQLWTETTEKVTQAVFKNFEE 1012

Query: 177  -HPSNGPLVMALSGSKGSFINISQMIACVGQQA 208
             +P N   VMA SG++G+   I Q+    G   
Sbjct: 1013 NYPFNPLYVMAQSGARGNPQQIRQLCGLRGLMQ 1045


>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 511

 Score = 26.2 bits (57), Expect = 8.0
 Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 3/44 (6%)

Query: 65  ISPDPNLQIYQVGIPEHVAKILTYPERVHH---ANKEHLKQLVL 105
           +S   N    +  +PE + K+ T  +++     A+ E +K  + 
Sbjct: 462 LSGFSNYSFEKDVLPEELKKLSTLKKKLKFIERADVELVKNAIE 505


>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli
           [TaxId: 562]}
          Length = 428

 Score = 25.9 bits (56), Expect = 9.7
 Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 2/31 (6%)

Query: 78  IPEHVAKILTYPERVHH--ANKEHLKQLVLN 106
           +P+ +A+    P   H+  A+   L++L++N
Sbjct: 396 LPKELAERADLPLLSHNLPADFAALRKLMMN 426


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0488    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,486,156
Number of extensions: 67142
Number of successful extensions: 129
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 10
Length of query: 409
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 322
Effective length of database: 1,213,086
Effective search space: 390613692
Effective search space used: 390613692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)