BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13849
(342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UKM|A Chain A, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|B Chain B, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|C Chain C, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
pdb|3UKM|D Chain D, Crystal Structure Of The Human Two Pore Domain Potassium
Ion Channel K2p1 (Twik-1)
Length = 280
Score = 98.6 bits (244), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 60/203 (29%), Positives = 102/203 (50%), Gaps = 17/203 (8%)
Query: 22 GAAVFDALESNTERRRWELLQSFRDEMLRKYNI---SQIDYHMLEIVVIEN------KPH 72
GA VF ++E E + L+ + L ++ Q++ + ++ N
Sbjct: 27 GAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQA 86
Query: 73 KAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
W F A +F++ VL+ GYGH+ P++ GGKAFC+ Y+++GIP L+ ++ +R+
Sbjct: 87 SGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146
Query: 133 NKFASIVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTT----GAAVFSKYE-GWSYF 187
V RR + ++ + LL F+ + AAVFS E W++
Sbjct: 147 TVH---VTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFL 203
Query: 188 DSFYYCFVTLTTIGFGDYVALQG 210
+SFY+CF++L+TIG GDYV +G
Sbjct: 204 ESFYFCFISLSTIGLGDYVPGEG 226
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/34 (58%), Positives = 27/34 (79%), Gaps = 1/34 (2%)
Query: 240 AAVFSKYEG-WSYFDSFYYCFVTLTTIGFGDYVA 272
AAVFS E W++ +SFY+CF++L+TIG GDYV
Sbjct: 190 AAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVP 223
>pdb|3UM7|A Chain A, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|3UM7|B Chain B, Crystal Structure Of The Human Two Pore Domain K+ Ion
Channel Traak (K2p4.1)
pdb|4I9W|A Chain A, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
pdb|4I9W|B Chain B, Human Two Pore Domain K+ Channel Traak (k2p4.1) - Fab
Complex Structure
Length = 309
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 98/203 (48%), Gaps = 19/203 (9%)
Query: 22 GAAVFDALESNTERRRWELLQSFRDEMLRKYN-ISQIDYHMLEIVVIENKPHKAGPQ--- 77
GA VF ALE E++ L R++ LR + +S + +L V + A P+
Sbjct: 46 GALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQS 105
Query: 78 --------WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIG 129
W AF+FS ++ IGYG+ T G+ FC+ YA+VGIPL ++ +G
Sbjct: 106 TSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVG 165
Query: 130 ERLNKFASIVIRRAKGLLRCEHAEATEINLMFA-----TGLLSFIITTTGAAVFSKYEGW 184
+RL I + + H + ++ A G L F++T T VF E W
Sbjct: 166 DRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLTPT--FVFCYMEDW 223
Query: 185 SYFDSFYYCFVTLTTIGFGDYVA 207
S ++ Y+ VTLTT+GFGDYVA
Sbjct: 224 SKLEAIYFVIVTLTTVGFGDYVA 246
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 40/70 (57%), Gaps = 4/70 (5%)
Query: 229 GLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVAL 288
G L F++T T VF E WS ++ Y+ VTLTT+GFGDYVA + + P Y L
Sbjct: 205 GCLLFVLTPT--FVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPR--QDSPAYQPL 260
Query: 289 SLVFILFGLA 298
+IL GLA
Sbjct: 261 VWFWILLGLA 270
>pdb|3TET|A Chain A, Crystal Structure Of Nak2k Channel Y66f Mutant
pdb|3TET|B Chain B, Crystal Structure Of Nak2k Channel Y66f Mutant
Length = 97
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+GFGD+ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDF-SPQTD 57
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+GFGD+
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGFGDF 52
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G+G +P T GK F + Y +GI L
Sbjct: 36 ALYFSVVTLTTVGFGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3OUF|A Chain A, Structure Of A K+ Selective Nak Mutant
pdb|3OUF|B Chain B, Structure Of A K+ Selective Nak Mutant
Length = 97
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+GD+ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDF-SPQTD 57
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+GD+
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDF 52
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +GYG +P T GK F + Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T4D|A Chain A, Crystal Structure Of Nak2k Channel Y55f Mutant
pdb|3T4D|B Chain B, Crystal Structure Of Nak2k Channel Y55f Mutant
Length = 97
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ ++ VTLTT+G+GD+ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDF-SPQTD 57
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ ++ VTLTT+G+GD+
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALFFSVVTLTTVGYGDF 52
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A +FS V L +GYG +P T GK F + Y +GI L
Sbjct: 36 ALFFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T1C|A Chain A, Crystal Structure Of Nak Channel D66y Mutant
pdb|3T1C|B Chain B, Crystal Structure Of Nak Channel D66y Mutant
Length = 97
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +GYG+ +P T GK F + Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGNFSPQTDFGKIFTILYIFIGIGL 73
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+G++ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNF-SPQTD 57
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+G++
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGNF 52
>pdb|3VOU|A Chain A, The Crystal Structure Of Nak-Navsulp Chimera Channel
pdb|3VOU|B Chain B, The Crystal Structure Of Nak-Navsulp Chimera Channel
Length = 148
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 137 SIVIRRAKGLLRCEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFV 195
S ++ + L C A + E ++F +L+F+ T+G +S EG D+ Y+ V
Sbjct: 6 SFILTLKRMLKACLRAWKDKEFQVLF---VLTFLTLTSGTIFYSTVEGLRPLDALYFSVV 62
Query: 196 TLTTIGFGDY 205
TLTT+G G++
Sbjct: 63 TLTTVGDGNF 72
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
+L+F+ T+G +S EG D+ Y+ VTLTT+G G++ + Q D
Sbjct: 32 VLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNF-SPQTD 77
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 56 ALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGL 93
>pdb|3TCU|A Chain A, Crystal Structure Of Nak2k Channel D68e Mutant
pdb|3TCU|B Chain B, Crystal Structure Of Nak2k Channel D68e Mutant
Length = 97
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+G++ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEF-SPQTD 57
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +GYG +P T GK F + Y +GI L
Sbjct: 36 ALYFSVVTLTTVGYGEFSPQTDFGKIFTILYIFIGIGL 73
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G+G++
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGYGEF 52
>pdb|3T4Z|A Chain A, Crystal Structure Of Nak2k Channel Y55w Mutant
pdb|3T4Z|B Chain B, Crystal Structure Of Nak2k Channel Y55w Mutant
Length = 97
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ ++ VTLTT+G+GD+ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDF-SPQTD 57
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ ++ VTLTT+G+GD+
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALWFSVVTLTTVGYGDF 52
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A +FS V L +GYG +P T GK F + Y +GI L
Sbjct: 36 ALWFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3T2M|A Chain A, Crystal Structure Of Nak Channel N68d Mutant
pdb|3T2M|B Chain B, Crystal Structure Of Nak Channel N68d Mutant
Length = 97
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQND 276
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G GD+ + Q D
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDF-SPQTD 57
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G GD+
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGDF 52
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G +P T GK F + Y +GI L
Sbjct: 36 ALYFSVVTLTTVGDGDFSPQTDFGKIFTILYIFIGIGL 73
>pdb|3RBZ|A Chain A, Mthk Channel, Ca2+-Bound
pdb|3RBZ|B Chain B, Mthk Channel, Ca2+-Bound
pdb|3RBZ|C Chain C, Mthk Channel, Ca2+-Bound
pdb|3RBZ|D Chain D, Mthk Channel, Ca2+-Bound
Length = 340
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 144 KGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFG 203
K L R AT I L+ +L+ II G A F EG S+ S Y+ FVT+ T+G+G
Sbjct: 10 KHLPRVLKVPATRILLL----VLAVIIY--GTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 204 DY 205
DY
Sbjct: 64 DY 65
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 65
>pdb|1LNQ|A Chain A, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|B Chain B, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|C Chain C, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|D Chain D, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|E Chain E, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|F Chain F, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|G Chain G, Crystal Structure Of Mthk At 3.3 A
pdb|1LNQ|H Chain H, Crystal Structure Of Mthk At 3.3 A
Length = 336
Score = 36.6 bits (83), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 144 KGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFG 203
K L R AT I L+ +L+ II G A F EG S+ S Y+ FVT+ T+G+G
Sbjct: 10 KHLPRVLKVPATRILLL----VLAVIIY--GTAGFHFIEGESWTVSLYWTFVTIATVGYG 63
Query: 204 DY 205
DY
Sbjct: 64 DY 65
Score = 36.6 bits (83), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 25 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 65
>pdb|2Q67|A Chain A, Crystal Structure Of Nak Channel D66a Mutant
pdb|2Q67|B Chain B, Crystal Structure Of Nak Channel D66a Mutant
Length = 114
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 206 VALQGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 263
+ L+ +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLT
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLT 62
Query: 264 TIGFGDYVALQND 276
T+G G++ + Q D
Sbjct: 63 TVGAGNF-SPQTD 74
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 144 KGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
K +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 9 KRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 202 FGDY 205
G++
Sbjct: 66 AGNF 69
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q69|A Chain A, Crystal Structure Of Nak Channel D66n Mutant
pdb|2Q69|B Chain B, Crystal Structure Of Nak Channel D66n Mutant
Length = 114
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 206 VALQGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 263
+ L+ +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLT
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLT 62
Query: 264 TIGFGDYVALQND 276
T+G G++ + Q D
Sbjct: 63 TVGNGNF-SPQTD 74
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 144 KGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
K +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 9 KRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 202 FGDY 205
G++
Sbjct: 66 NGNF 69
Score = 34.7 bits (78), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 53 ALYFSVVTLTTVGNGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q6A|A Chain A, Crystal Structure Of Nak Channel D66e Mutant
pdb|2Q6A|B Chain B, Crystal Structure Of Nak Channel D66e Mutant
Length = 114
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 206 VALQGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 263
+ L+ +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLT
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLT 62
Query: 264 TIGFGDYVALQND 276
T+G G++ + Q D
Sbjct: 63 TVGEGNF-SPQTD 74
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 144 KGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
K +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 9 KRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 202 FGDY 205
G++
Sbjct: 66 EGNF 69
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 53 ALYFSVVTLTTVGEGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|2Q68|A Chain A, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
pdb|2Q68|B Chain B, Crystal Structure Of Nak Channel D66a, S70e Double Mutants
Length = 114
Score = 35.4 bits (80), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 206 VALQGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 263
+ L+ +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLT
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLT 62
Query: 264 TIGFGDY 270
T+G G++
Sbjct: 63 TVGAGNF 69
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 144 KGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
K +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 9 KRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 202 FGDY 205
G++
Sbjct: 66 AGNF 69
Score = 33.5 bits (75), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ P T GK F + Y +GI L
Sbjct: 53 ALYFSVVTLTTVGAGNFEPQTDFGKIFTILYIFIGIGL 90
>pdb|4HYO|A Chain A, Crystal Structure Of Mthk Pore
pdb|4HYO|B Chain B, Crystal Structure Of Mthk Pore
pdb|4HYO|C Chain C, Crystal Structure Of Mthk Pore
pdb|4HYO|D Chain D, Crystal Structure Of Mthk Pore
pdb|4HYO|E Chain E, Crystal Structure Of Mthk Pore
pdb|4HYO|F Chain F, Crystal Structure Of Mthk Pore
pdb|4HYO|G Chain G, Crystal Structure Of Mthk Pore
pdb|4HYO|H Chain H, Crystal Structure Of Mthk Pore
pdb|4HZ3|D Chain D, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|C Chain C, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|A Chain A, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|B Chain B, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|E Chain E, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|F Chain F, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|G Chain G, Mthk Pore Crystallized In Presence Of Tbsb
pdb|4HZ3|H Chain H, Mthk Pore Crystallized In Presence Of Tbsb
Length = 91
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 146 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
L R AT I L+ +L+ II G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 2 LPRVLKVPATRILLL----VLAVIIY--GTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 55
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 211 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
L R AT I L+ +L+ II G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 2 LPRVLKVPATRILLL----VLAVIIY--GTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 55
>pdb|2AHY|A Chain A, Na+ Complex Of The Nak Channel
pdb|2AHY|B Chain B, Na+ Complex Of The Nak Channel
pdb|2AHZ|A Chain A, K+ Complex Of The Nak Channel
pdb|2AHZ|B Chain B, K+ Complex Of The Nak Channel
Length = 110
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 206 VALQGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 263
+ L+ +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLT
Sbjct: 6 LTLKRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLT 62
Query: 264 TIGFGDYVALQND 276
T+G G++ + Q D
Sbjct: 63 TVGDGNF-SPQTD 74
Score = 34.7 bits (78), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 144 KGLLR-CEHA-EATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
K +LR C A + E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 9 KRMLRACLRAWKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 65
Query: 202 FGDY 205
G++
Sbjct: 66 DGNF 69
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 53 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 90
>pdb|3R65|A Chain A, Mthk Channel Pore E92q Mutant
Length = 82
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
>pdb|3LDC|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+
pdb|3LDE|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 100 Mm Na+
Length = 82
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
>pdb|3LDD|A Chain A, High Resolution Open Mthk Pore Structure Crystallized In
100 Mm K+ And Further Soaked In 99 Mm Na+1 MM K+
Length = 82
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDY 48
>pdb|3E83|A Chain A, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E83|B Chain B, Crystal Structure Of The The Open Nak Channel Pore
pdb|3E86|A Chain A, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E86|B Chain B, High Resolution Crystal Structure Of The Open Nak Channel
Pore
pdb|3E89|A Chain A, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E89|B Chain B, Crystal Structure Of The The Open Nak Channel-Low Na+
Complex
pdb|3E8B|A Chain A, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8B|B Chain B, Crystal Structure Of The The Open Nak Channel- Rb+ Complex
pdb|3E8F|A Chain A, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8F|B Chain B, Crystal Structure Of The The Open Nak Channel- K+BA2+
pdb|3E8G|A Chain A, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8G|B Chain B, Crystal Structure Of The The Open Nak Channel-Na+CA2+
COMPLEX
pdb|3E8H|A Chain A, Crystal Structure Of The The Open Nak Channel-K+ Complex
pdb|3E8H|B Chain B, Crystal Structure Of The The Open Nak Channel-K+ Complex
Length = 96
Score = 33.5 bits (75), Expect = 0.16, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPL 120
A YFS V L +G G+ +P T GK F + Y +GI L
Sbjct: 35 ALYFSVVTLTTVGDGNFSPQTDFGKIFTILYIFIGIGL 72
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 156 EINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
E ++F +L+ I +G +S EG D+ Y+ VTLTT+G G++
Sbjct: 5 EFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF 51
Score = 32.7 bits (73), Expect = 0.34, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 221 EINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
E ++F +L+ I +G +S EG D+ Y+ VTLTT+G G++
Sbjct: 5 EFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVGDGNF 51
>pdb|3K06|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K06|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
K+ Complex
pdb|3K08|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
pdb|3K08|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Ntpp,
Na+ Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 266
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLV 123
A YFS V L +G P T GK F + Y +GI GLV
Sbjct: 36 ALYFSVVTLTTVG-NTPPPQTDFGKIFTILYIFIGI--GLV 73
>pdb|3K0D|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0D|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
K+ Complex
pdb|3K0G|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
pdb|3K0G|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Etpp,
Na+ Complex
Length = 96
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 266
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
>pdb|3LNM|B Chain B, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
pdb|3LNM|D Chain D, F233w Mutant Of The Kv2.1 Paddle-Kv1.2 Chimera Channel
Length = 514
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
AF+++ V + +GYG P TIGGK A+ G+
Sbjct: 377 PDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 DSFYYCFVTLTTIGFGDYVA 207
D+F++ V++TT+G+GD V
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 253 DSFYYCFVTLTTIGFGDYVA 272
D+F++ V++TT+G+GD V
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
>pdb|3LUT|B Chain B, A Structural Model For The Full-Length Shaker Potassium
Channel Kv1.2
Length = 499
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
AF+++ V + +GYG P TIGGK A+ G+
Sbjct: 362 PDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 399
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 DSFYYCFVTLTTIGFGDYVA 207
D+F++ V++TT+G+GD V
Sbjct: 363 DAFWWAVVSMTTVGYGDMVP 382
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 253 DSFYYCFVTLTTIGFGDYVA 272
D+F++ V++TT+G+GD V
Sbjct: 363 DAFWWAVVSMTTVGYGDMVP 382
>pdb|2A79|B Chain B, Mammalian Shaker Kv1.2 Potassium Channel- Beta Subunit
Complex
Length = 499
Score = 32.3 bits (72), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
AF+++ V + +GYG P TIGGK A+ G+
Sbjct: 362 PDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 399
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 DSFYYCFVTLTTIGFGDYVA 207
D+F++ V++TT+G+GD V
Sbjct: 363 DAFWWAVVSMTTVGYGDMVP 382
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 253 DSFYYCFVTLTTIGFGDYVA 272
D+F++ V++TT+G+GD V
Sbjct: 363 DAFWWAVVSMTTVGYGDMVP 382
>pdb|2R9R|B Chain B, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
pdb|2R9R|H Chain H, Shaker Family Voltage Dependent Potassium Channel
(Kv1.2-Kv2.1 Paddle Chimera Channel) In Association With
Beta Subunit
Length = 514
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
AF+++ V + +GYG P TIGGK A+ G+
Sbjct: 377 PDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGV 414
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 188 DSFYYCFVTLTTIGFGDYVA 207
D+F++ V++TT+G+GD V
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 253 DSFYYCFVTLTTIGFGDYVA 272
D+F++ V++TT+G+GD V
Sbjct: 378 DAFWWAVVSMTTVGYGDMVP 397
>pdb|1P7B|A Chain A, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|1P7B|B Chain B, Crystal Structure Of An Inward Rectifier Potassium Channel
pdb|2WLL|B Chain B, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
F GAF+FS LA +GYG P T+ A VG+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|2WLL|A Chain A, Potassium Channel From Burkholderia Pseudomallei
Length = 333
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%)
Query: 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
F GAF+FS LA +GYG P T+ A VG+
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGM 135
>pdb|3OUS|A Chain A, Mthk Channel Pore T59a Mutant
Length = 82
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
LL + G A F EG S+ S Y+ FVT+ +G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDY 48
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 270
LL + G A F EG S+ S Y+ FVT+ +G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIAAVGYGDY 48
>pdb|2QKS|A Chain A, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
pdb|2QKS|B Chain B, Crystal Structure Of A Kir3.1-Prokaryotic Kir Channel
Chimera
Length = 321
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 80 FAGAFYFSTVVLAMIGYGHSTPMTI 104
F GAF+FS LA +GYG P T+
Sbjct: 79 FGGAFFFSVETLATVGYGDMHPQTV 103
>pdb|4H33|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Module In A Closed State In Lipid Membranes, Tetragonal
Crystal Form
pdb|4H37|A Chain A, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
pdb|4H37|B Chain B, Crystal Structure Of A Voltage-gated K+ Channel Pore
Domain In A Closed State In Lipid Membranes
Length = 137
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 233 FIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVF 292
+I VF + E +Y D+ ++ VT TT+G+GD V + P L+ +
Sbjct: 26 LVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPV--------TPIGRILASIM 77
Query: 293 ILFGLA 298
+LFG+A
Sbjct: 78 MLFGIA 83
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 168 FIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLR 213
+I VF + E +Y D+ ++ VT TT+G+GD V + + R
Sbjct: 26 LVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIGR 71
>pdb|3K03|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K03|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
K+ Complex
pdb|3K04|A Chain A, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
pdb|3K04|B Chain B, Crystal Structure Of Cng Mimicking Nak Mutant, Nak-Dtpp,
Na+ Complex
Length = 96
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 152 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 201
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
Score = 31.6 bits (70), Expect = 0.74, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 217 AEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIG 266
A+ E ++F +L+ I +G +S EG D+ Y+ VTLTT+G
Sbjct: 2 AKDKEFQVLFVLTILTLI---SGTIFYSTVEGLRPIDALYFSVVTLTTVG 48
>pdb|2A0L|A Chain A, Crystal Structure Of Kvap-33h1 Fv Complex
pdb|2A0L|B Chain B, Crystal Structure Of Kvap-33h1 Fv Complex
Length = 241
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 185 SYFDSFYYCFVTLTTIGFGDYV 206
S FD+ ++ VT TT+G+GD V
Sbjct: 177 SVFDALWWAVVTATTVGYGDVV 198
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 250 SYFDSFYYCFVTLTTIGFGDYV 271
S FD+ ++ VT TT+G+GD V
Sbjct: 177 SVFDALWWAVVTATTVGYGDVV 198
>pdb|1ORQ|C Chain C, X-Ray Structure Of A Voltage-Dependent Potassium Channel
In Complex With An Fab
Length = 223
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 185 SYFDSFYYCFVTLTTIGFGDYV 206
S FD+ ++ VT TT+G+GD V
Sbjct: 165 SVFDALWWAVVTATTVGYGDVV 186
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 250 SYFDSFYYCFVTLTTIGFGDYV 271
S FD+ ++ VT TT+G+GD V
Sbjct: 165 SVFDALWWAVVTATTVGYGDVV 186
>pdb|1XL4|A Chain A, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL4|B Chain B, Intermediate Gating Structure 1 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|A Chain A, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|1XL6|B Chain B, Intermediate Gating Structure 2 Of The Inwardly Rectifying
K+ Channel Kirbac3.1
pdb|2WLH|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLI|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLJ|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|A Chain A, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLK|B Chain B, Structure Of The Atp-Sensitive Inward Rectifier Potassium
Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLM|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLO|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 66 VIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMF 125
VIEN + G F AF+FS +A IGYG P+ A+ G+ LGL +
Sbjct: 74 VIENA--RPG---SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LGLAVA 127
Query: 126 QSI 128
S+
Sbjct: 128 ASL 130
>pdb|2WLI|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 66 VIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMF 125
VIEN + G F AF+FS +A IGYG P+ A+ G+ LGL +
Sbjct: 74 VIENA--RPG---SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LGLAVA 127
Query: 126 QSI 128
S+
Sbjct: 128 ASL 130
>pdb|2X6A|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 66 VIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMF 125
VIEN + G F AF+FS +A IGYG P+ A+ G+ LGL +
Sbjct: 74 VIENA--RPG---SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LGLAVA 127
Query: 126 QSI 128
S+
Sbjct: 128 ASL 130
>pdb|2WLN|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|B Chain B, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|C Chain C, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|D Chain D, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|E Chain E, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|F Chain F, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|G Chain G, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2WLN|H Chain H, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 66 VIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMF 125
VIEN + G F AF+FS +A IGYG P+ A+ G+ LGL +
Sbjct: 74 VIENA--RPG---SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LGLAVA 127
Query: 126 QSI 128
S+
Sbjct: 128 ASL 130
>pdb|2X6B|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
pdb|2X6C|A Chain A, Potassium Channel From Magnetospirillum Magnetotacticum
Length = 301
Score = 28.9 bits (63), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 66 VIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMF 125
VIEN + G F AF+FS +A IGYG P+ A+ G+ LGL +
Sbjct: 74 VIENA--RPG---SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGM-LGLAVA 127
Query: 126 QSI 128
S+
Sbjct: 128 ASL 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.328 0.141 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,088,695
Number of Sequences: 62578
Number of extensions: 344666
Number of successful extensions: 1062
Number of sequences better than 100.0: 43
Number of HSP's better than 100.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 935
Number of HSP's gapped (non-prelim): 127
length of query: 342
length of database: 14,973,337
effective HSP length: 100
effective length of query: 242
effective length of database: 8,715,537
effective search space: 2109159954
effective search space used: 2109159954
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)