Query psy13849
Match_columns 342
No_of_seqs 305 out of 2840
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 22:00:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13849.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13849hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4404|consensus 100.0 1E-60 2.2E-65 441.1 22.7 251 1-340 2-252 (350)
2 KOG1418|consensus 100.0 2E-32 4.3E-37 268.9 13.1 262 2-333 13-301 (433)
3 PF07885 Ion_trans_2: Ion chan 99.5 2E-14 4.2E-19 110.2 2.7 58 76-133 21-78 (79)
4 PF07885 Ion_trans_2: Ion chan 99.4 6.6E-14 1.4E-18 107.3 3.3 70 235-336 6-78 (79)
5 KOG3713|consensus 99.2 2.8E-11 6.1E-16 119.1 8.8 97 12-143 345-441 (477)
6 KOG1419|consensus 99.0 6.2E-10 1.3E-14 110.5 5.4 57 78-134 268-324 (654)
7 PRK10537 voltage-gated potassi 98.9 2.6E-09 5.7E-14 105.4 9.2 55 76-130 165-219 (393)
8 KOG4404|consensus 98.9 3.5E-09 7.5E-14 99.4 7.8 66 77-142 184-257 (350)
9 KOG1545|consensus 98.8 2.4E-09 5.3E-14 101.6 2.1 56 78-133 392-447 (507)
10 PLN03192 Voltage-dependent pot 98.7 4.1E-09 8.9E-14 113.5 3.2 55 80-134 251-305 (823)
11 PRK10537 voltage-gated potassi 98.7 1.6E-08 3.5E-13 99.8 6.1 56 235-298 147-208 (393)
12 KOG3713|consensus 98.7 2.8E-08 6.1E-13 98.2 6.3 59 249-339 376-434 (477)
13 KOG1420|consensus 98.6 3.6E-08 7.8E-13 98.4 4.6 96 5-133 247-342 (1103)
14 KOG1418|consensus 98.5 8.7E-08 1.9E-12 94.1 4.1 59 247-337 112-170 (433)
15 KOG3684|consensus 98.4 2E-07 4.3E-12 91.3 3.8 87 8-132 254-340 (489)
16 KOG1419|consensus 98.4 2.7E-07 5.8E-12 92.1 4.0 68 231-330 239-317 (654)
17 KOG4390|consensus 98.2 5.7E-07 1.2E-11 86.4 2.8 53 77-129 354-406 (632)
18 PLN03192 Voltage-dependent pot 98.2 8.4E-07 1.8E-11 95.7 3.1 54 251-336 251-304 (823)
19 KOG1545|consensus 98.1 2.8E-06 6.1E-11 81.1 3.9 29 249-277 392-420 (507)
20 KOG1420|consensus 97.9 1.3E-05 2.8E-10 80.6 5.2 61 236-328 261-334 (1103)
21 KOG0498|consensus 97.8 1.2E-05 2.5E-10 84.5 2.1 58 80-137 295-352 (727)
22 KOG0501|consensus 97.4 0.0001 2.2E-09 74.5 3.5 54 79-132 423-476 (971)
23 KOG4390|consensus 97.2 2.7E-05 5.9E-10 75.1 -3.0 45 233-277 333-383 (632)
24 KOG0498|consensus 97.2 0.00014 3E-09 76.6 1.6 55 251-337 295-349 (727)
25 PF01007 IRK: Inward rectifier 96.6 0.0013 2.8E-08 63.9 2.6 51 79-129 84-136 (336)
26 KOG3684|consensus 96.5 0.0017 3.6E-08 64.3 2.9 71 233-335 262-340 (489)
27 KOG3193|consensus 96.3 0.0093 2E-07 60.2 6.5 29 249-277 216-244 (1087)
28 KOG3193|consensus 96.0 0.023 5.1E-07 57.4 7.9 46 74-119 212-257 (1087)
29 PF01007 IRK: Inward rectifier 95.8 0.0098 2.1E-07 57.8 4.1 56 250-337 84-141 (336)
30 KOG0501|consensus 95.4 0.013 2.9E-07 59.6 3.5 54 250-335 423-476 (971)
31 KOG3827|consensus 95.1 0.089 1.9E-06 51.3 8.1 49 79-127 112-162 (400)
32 PF00520 Ion_trans: Ion transp 88.9 0.11 2.5E-06 44.7 -0.2 46 79-124 145-196 (200)
33 KOG0500|consensus 88.0 0.39 8.5E-06 48.4 2.8 54 80-134 184-237 (536)
34 TIGR00933 2a38 potassium uptak 87.4 0.37 8.1E-06 47.7 2.3 35 77-111 13-50 (390)
35 PF00520 Ion_trans: Ion transp 85.9 0.79 1.7E-05 39.4 3.3 25 249-273 144-168 (200)
36 TIGR00933 2a38 potassium uptak 83.8 0.57 1.2E-05 46.5 1.6 42 77-118 229-272 (390)
37 PF00060 Lig_chan: Ligand-gate 75.8 0.64 1.4E-05 38.7 -0.8 56 77-133 42-97 (148)
38 KOG3827|consensus 70.9 18 0.00038 35.8 7.5 26 250-275 112-137 (400)
39 PRK05482 potassium-transportin 63.5 4.3 9.3E-05 42.1 1.9 38 80-117 329-368 (559)
40 KOG0499|consensus 58.2 4.9 0.00011 41.7 1.2 53 79-132 403-455 (815)
41 PRK10750 potassium transporter 51.4 42 0.00092 34.4 6.7 39 79-117 304-344 (483)
42 PRK10750 potassium transporter 49.3 16 0.00034 37.5 3.2 49 246-297 202-250 (483)
43 PF11337 DUF3139: Protein of u 48.3 1.2E+02 0.0026 23.1 8.3 13 50-62 45-57 (85)
44 KOG0500|consensus 40.9 15 0.00033 37.4 1.5 26 251-277 184-209 (536)
45 COG5353 Uncharacterized protei 40.8 43 0.00093 28.7 4.0 42 1-42 1-43 (161)
46 KOG4440|consensus 40.5 9.8 0.00021 39.8 0.2 58 75-132 609-666 (993)
47 PTZ00444 hypothetical protein; 39.5 1.7E+02 0.0036 26.0 7.6 62 7-68 5-80 (184)
48 PHA02669 hypothetical protein; 37.4 65 0.0014 28.1 4.6 26 13-38 9-34 (210)
49 KOG0499|consensus 37.3 26 0.00057 36.6 2.6 28 247-275 400-427 (815)
50 KOG3676|consensus 35.9 45 0.00097 36.0 4.1 64 250-339 586-651 (782)
51 COG3462 Predicted membrane pro 33.6 1.9E+02 0.004 23.6 6.3 45 22-66 65-115 (117)
52 PF00060 Lig_chan: Ligand-gate 33.5 48 0.001 27.1 3.3 52 250-334 44-95 (148)
53 KOG1052|consensus 23.4 82 0.0018 33.2 3.7 56 76-132 378-433 (656)
No 1
>KOG4404|consensus
Probab=100.00 E-value=1e-60 Score=441.11 Aligned_cols=251 Identities=62% Similarity=1.020 Sum_probs=229.7
Q ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Q psy13849 1 MRRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKF 80 (342)
Q Consensus 1 ~k~~~~r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~ 80 (342)
||++|.|.+.|+++.+.|+++||++|.+||.++|.++++.+++.+++++++||+|++|++++|+++.+++|++.+++|+|
T Consensus 2 m~~qnvR~l~Livct~tYLLvGAaVFdaLEse~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~~s~ph~ag~qWkF 81 (350)
T KOG4404|consen 2 MKRQNVRTLLLIVCTFTYLLVGAAVFDALESENEARERERLERRLANLKRKYNLSEEDYRELERVILKSEPHKAGPQWKF 81 (350)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCcccccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhhhccccccccchhhHHHH
Q psy13849 81 AGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLM 160 (342)
Q Consensus 81 ~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (342)
.+||||+.|++||||||+.+|.|++||+|||+|+++|||+.+++++++|++++.+..+++++.|+...+++.+.+..+++
T Consensus 82 ~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~~~r~~~~~r~~~~S~~~l~ 161 (350)
T KOG4404|consen 82 AGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILRRCRRRLGRRRWDVSVYNLV 161 (350)
T ss_pred CcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988776665555555543
Q ss_pred HhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCcccccccccccccchhhhhHHHHHhhHHHHHHHhhhh
Q psy13849 161 FATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGA 240 (342)
Q Consensus 161 l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~e~~~~~~~~l~l~~~~~~~~~~~~ga 240 (342)
++ .....+++++.||
T Consensus 162 ~i-----------------------------------------------------------------~~~~~~~~i~~ga 176 (350)
T KOG4404|consen 162 LI-----------------------------------------------------------------LFTACILLICCGA 176 (350)
T ss_pred HH-----------------------------------------------------------------HHHHHHHHHHhhH
Confidence 33 2233345567899
Q ss_pred hhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHH
Q psy13849 241 AVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFG 320 (342)
Q Consensus 241 ~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g 320 (342)
.+|+..|+|||+||+||||||+|||||||+|+.|+++.++++|.| +.++++||++|
T Consensus 177 a~fs~~E~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplY------------------------v~~sf~fIL~G 232 (350)
T KOG4404|consen 177 AMFSSVEGWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLY------------------------VFFSFVFILLG 232 (350)
T ss_pred HHhhcccCcchhhhhheeeeeeeeccccchhhhcchhhhhCCCce------------------------ehHhHHHHHHH
Confidence 999999999999999999999999999999999987766666665 99999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcc
Q psy13849 321 LAVVAASINLLVLRFMTIIS 340 (342)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~ 340 (342)
+++++.++|++..|||+...
T Consensus 233 l~vi~a~~NllvLrf~t~~~ 252 (350)
T KOG4404|consen 233 LCVIYALLNLLVLRFMTMNA 252 (350)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999998763
No 2
>KOG1418|consensus
Probab=99.98 E-value=2e-32 Score=268.90 Aligned_cols=262 Identities=30% Similarity=0.440 Sum_probs=169.4
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHhccchHHHh-HHHHHHHHHHHH-HH-cCCCH--------HHHHH-----HHHH
Q psy13849 2 RRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRR-WELLQSFRDEML-RK-YNISQ--------IDYHM-----LEIV 65 (342)
Q Consensus 2 k~~~~r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~-~~~~~~~~~~l~-~~-~n~~~--------~~~~~-----l~~~ 65 (342)
++...+|+.++...+.|.+.||.+|+.+|.++|.+. +......+.+.. +. .++.+ .+.+. .+..
T Consensus 13 ~~~~~~~~~l~~~~~~y~~~ga~~f~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T KOG1418|consen 13 LRFGIRHVLLLLLVLLYLVLGAFIFQALERPKELELKQRELGLLLSNFILRIWRCIDELVLEEESRTKAHKQKASVLLAL 92 (433)
T ss_pred hhhhcchhhHHHHHHHHHhhHHHHHHHhcchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345678888988899999999999999999999877 333222222111 11 01111 11100 0000
Q ss_pred ---HHH------hCCCCCCCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHH
Q psy13849 66 ---VIE------NKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFA 136 (342)
Q Consensus 66 ---~~~------~~~~~~~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~ 136 (342)
... ...+.....|+|++|+||+.|++|||||||++|.|.+||++|++|+++|||+++++++++|+.+.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~W~f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~~~ 172 (433)
T KOG1418|consen 93 LLGVANSALSLEGDESPDTQQWSFSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLADSL 172 (433)
T ss_pred hhhcchhhcccccccCCCCcceecchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 000 11234567899999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHh--hhccccccccchhhHHHHHhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCccccccccccc
Q psy13849 137 SIVIRR--AKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRC 214 (342)
Q Consensus 137 ~~~~~~--~~~~~~~~~~~~~~~~l~l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~ 214 (342)
....++ .+......+...... .........+++...+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~-------------------------- 211 (433)
T KOG1418|consen 173 RKLYRRRHVELQRDRIRSNLRRS---------------IGLRNRSVELGIELLD-------------------------- 211 (433)
T ss_pred HHHHHHhhhhhhhhhhhhhhhcc---------------ccchhcccccchhhcc--------------------------
Confidence 777654 110000000000000 0000000000111000
Q ss_pred ccchhhhhHHHHHhhHHHHHHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhh
Q psy13849 215 EHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFIL 294 (342)
Q Consensus 215 e~~~~~~~~l~l~~~~~~~~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~ 294 (342)
+ ...++.. ...++++++..|+.++..+|+|+|++|+||+++|+|||||||++|.+......
T Consensus 212 ---~-~~~~~~~-~~~~~~~~~~~~~~~~~~~e~w~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~-------------- 272 (433)
T KOG1418|consen 212 ---E-LRFILLL-LLGISLVYLSPGSLLFSLQEQWSFIEAFYFSFISLTTIGFGDIVPRTLLGRFR-------------- 272 (433)
T ss_pred ---C-cceehhh-hheeeEEEecccceeeeceeceeeEeeeeEEEEEeeeecCCccccCCCcceee--------------
Confidence 0 0112222 22233445678999999999999999999999999999999999987654110
Q ss_pred hhcccccccccCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13849 295 FGLANDHALEQKPGYVALSLVFILFGLAVVAASINLLVL 333 (342)
Q Consensus 295 ~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 333 (342)
++..+.....+++++|++.++++.+...+
T Consensus 273 ----------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 301 (433)
T KOG1418|consen 273 ----------REELVDPLASVWILSGLALLALVLLGPDR 301 (433)
T ss_pred ----------ccccccchhHHHHHhhhhHHHHHhhcccc
Confidence 12224678899999999999999855433
No 3
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.47 E-value=2e-14 Score=110.22 Aligned_cols=58 Identities=33% Similarity=0.698 Sum_probs=51.5
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
++|++.||+||+.+++|||||||+.|.|+.||+++++++++|++++.+.++.+++.+.
T Consensus 21 ~~~~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 21 EKWSFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp STTSHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3899999999999999999999999999999999999999999999999988877654
No 4
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []. ; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....
Probab=99.43 E-value=6.6e-14 Score=107.29 Aligned_cols=70 Identities=30% Similarity=0.641 Sum_probs=58.4
Q ss_pred HHhhhhhhhhc---ccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhH
Q psy13849 235 ITTTGAAVFSK---YEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVA 311 (342)
Q Consensus 235 ~~~~ga~~~~~---~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~ 311 (342)
++..|+..+.. .|+|++.||+||+++|+|||||||++|.++.+ |+
T Consensus 6 ~l~~~~~~~~~~~~~~~~~~~da~yfs~~t~tTvGyGDi~p~t~~g--------------------------------r~ 53 (79)
T PF07885_consen 6 VLAFGAIFFYISEGSEKWSFIDALYFSFVTITTVGYGDIVPQTPAG--------------------------------RI 53 (79)
T ss_dssp HHHHHHHHHHHTTSSSTTSHHHHHHHHHHHHTT---SSSSTSSHHH--------------------------------HH
T ss_pred eeHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcccCCCccCCccch--------------------------------HH
Confidence 34456666666 68999999999999999999999999987665 89
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13849 312 LSLVFILFGLAVVAASINLLVLRFM 336 (342)
Q Consensus 312 ~~~~~~~~g~~~~~~~~~~~~~~~~ 336 (342)
++++++++|+.+.++.++.+.+.++
T Consensus 54 ~~~~~~~~G~~~~~~~~~~~~~~l~ 78 (79)
T PF07885_consen 54 FTIIYMLIGIFLFALFLSVLASVLT 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988765
No 5
>KOG3713|consensus
Probab=99.22 E-value=2.8e-11 Score=119.08 Aligned_cols=97 Identities=20% Similarity=0.338 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeeeE
Q psy13849 12 VVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVL 91 (342)
Q Consensus 12 ~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~~ 91 (342)
+.++++|+..|-++|..+..-.|+++ +..+-=|.+-++|||++||
T Consensus 345 lglLllfL~~GI~iFStlvY~~Ek~~-----------------------------------~~~~FtSIPa~~WWaiVTM 389 (477)
T KOG3713|consen 345 LGLLLLFLAVGIVIFSTLVYFAEKDE-----------------------------------PDTKFTSIPAGFWWAVVTM 389 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcC-----------------------------------CCCCCccccchhheeeEEE
Confidence 34667788889888888875544432 1222447899999999999
Q ss_pred EeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhh
Q psy13849 92 AMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRA 143 (342)
Q Consensus 92 tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~ 143 (342)
|||||||++|+|..||++...-++.||-+.++.+..+-+.+.+..+....+.
T Consensus 390 TTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~y~~~k~~~ 441 (477)
T KOG3713|consen 390 TTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMYYSELKARE 441 (477)
T ss_pred eeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988888777666665544443
No 6
>KOG1419|consensus
Probab=98.96 E-value=6.2e-10 Score=110.47 Aligned_cols=57 Identities=25% Similarity=0.497 Sum_probs=52.6
Q ss_pred CCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 78 W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
=+|+||+||..+|+|||||||.+|+|..||++...++++||.++++..+.+|.-+.-
T Consensus 268 ~TyADALWWG~ITltTIGYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfAL 324 (654)
T KOG1419|consen 268 PTYADALWWGVITLTTIGYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFAL 324 (654)
T ss_pred hhHHHHHHhhheeEEeeccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhh
Confidence 379999999999999999999999999999999999999999999988888866543
No 7
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.94 E-value=2.6e-09 Score=105.43 Aligned_cols=55 Identities=27% Similarity=0.526 Sum_probs=50.5
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHH
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGE 130 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~ 130 (342)
..|++.+|+||+++|+||+||||+.|.|+.||+|+++++++|++++.+.++.+..
T Consensus 165 ~~~s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~ 219 (393)
T PRK10537 165 PIESLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFG 219 (393)
T ss_pred CCCCHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999998887776543
No 8
>KOG4404|consensus
Probab=98.90 E-value=3.5e-09 Score=99.37 Aligned_cols=66 Identities=17% Similarity=0.399 Sum_probs=51.4
Q ss_pred CCCccchheeeeeeEEeecccCCCCCc--------ccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMT--------IGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRR 142 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T--------~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~ 142 (342)
+|+|.||+||+++|+||||+||.++.- +.-+.+.++|+++|+.++...++.+.-++.....+..||
T Consensus 184 ~Wsyfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~t~~~~~~rr 257 (350)
T KOG4404|consen 184 GWSYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFMTMNAEDERR 257 (350)
T ss_pred CcchhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 999999999999999999999998754 356889999999999988777766554433333333333
No 9
>KOG1545|consensus
Probab=98.77 E-value=2.4e-09 Score=101.60 Aligned_cols=56 Identities=27% Similarity=0.488 Sum_probs=47.7
Q ss_pred CCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 78 W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
-+..||+||+.+|+|||||||++|.|..||+...+.++.|+-..++....+-.-++
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFn 447 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFN 447 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEeccc
Confidence 46899999999999999999999999999999999999998776666555444343
No 10
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.75 E-value=4.1e-09 Score=113.50 Aligned_cols=55 Identities=16% Similarity=0.384 Sum_probs=51.5
Q ss_pred ccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 80 ~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
|..|+||+++|+|||||||++|.|+.+|+|+++++++|+.+++++++++++.+.+
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E~i~~i~~ml~g~~~~a~~ig~i~~li~~ 305 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIEMIFIIFYMLFNLGLTAYLIGNMTNLVVE 305 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999876643
No 11
>PRK10537 voltage-gated potassium channel; Provisional
Probab=98.72 E-value=1.6e-08 Score=99.83 Aligned_cols=56 Identities=21% Similarity=0.407 Sum_probs=43.2
Q ss_pred HHhhhhhhhhcccC------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcc
Q psy13849 235 ITTTGAAVFSKYEG------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298 (342)
Q Consensus 235 ~~~~ga~~~~~~e~------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~ 298 (342)
++..|+.+++..|+ |++.||+||+++|+||+||||.+|.+..+ |+++.++|++|++
T Consensus 147 l~~~~~~g~~~~~~~f~~~~~s~~dA~y~svvt~tTvGyGdi~p~t~~g--------rl~~i~~ii~Gi~ 208 (393)
T PRK10537 147 LLFYSTFGALYLGDGFSPPIESLSTAFYFSIVTMSTVGYGDIVPVSESA--------RLFTISVIILGIT 208 (393)
T ss_pred HHHHHHHHHHHHccccCcCCCCHHHHHHhhheeeecccCCCCCCCCHHH--------HHHHHHHHHHHHH
Confidence 34456665555553 89999999999999999999999998877 5666666666665
No 12
>KOG3713|consensus
Probab=98.67 E-value=2.8e-08 Score=98.15 Aligned_cols=59 Identities=31% Similarity=0.465 Sum_probs=53.6
Q ss_pred CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHH
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASI 328 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (342)
-|..-++||+.+|+|||||||++|.|..| +++++.-++.|+.++|+-+
T Consensus 376 tSIPa~~WWaiVTMTTVGYGDm~P~T~~G--------------------------------klvas~cil~GVLvlAlPI 423 (477)
T KOG3713|consen 376 TSIPAGFWWAVVTMTTVGYGDMVPVTVLG--------------------------------KLVASLCILCGVLVLALPI 423 (477)
T ss_pred ccccchhheeeEEEeeecccCccccccch--------------------------------HHHHHHHHHHhHHHhhcch
Confidence 35778899999999999999999999988 8899999999999999999
Q ss_pred HHHHHHHhhhc
Q psy13849 329 NLLVLRFMTII 339 (342)
Q Consensus 329 ~~~~~~~~~~~ 339 (342)
.++.++|+.-.
T Consensus 424 tiIv~nF~~~y 434 (477)
T KOG3713|consen 424 TIIVNNFSMYY 434 (477)
T ss_pred HhHhhhHHHHH
Confidence 99999987643
No 13
>KOG1420|consensus
Probab=98.60 E-value=3.6e-08 Score=98.39 Aligned_cols=96 Identities=20% Similarity=0.338 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchh
Q psy13849 5 NVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAF 84 (342)
Q Consensus 5 ~~r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~ 84 (342)
++|...|+.+++..++.||.+.+.+|...+- |+ ......+-++++++
T Consensus 247 sirl~qlvsifisvwltaag~ihllensgdp-----------------------~~----------~f~n~hrltyw~cv 293 (1103)
T KOG1420|consen 247 SIRLVQLVSIFISVWLTAAGFIHLLENSGDP-----------------------WE----------NFQNNHRLTYWECV 293 (1103)
T ss_pred hhhHHHHHHHHHHHHHhhcceeehhhcCCCh-----------------------hH----------hccCcccchhhhee
Confidence 4677788888888899999999999832110 00 01222356899999
Q ss_pred eeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 85 YFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 85 ~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
||-++|++||||||+..+|..||+|.++|++.|+..++..+..+.+.+.
T Consensus 294 yfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielig 342 (1103)
T KOG1420|consen 294 YFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIG 342 (1103)
T ss_pred eeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHc
Confidence 9999999999999999999999999999999999998888777766554
No 14
>KOG1418|consensus
Probab=98.49 E-value=8.7e-08 Score=94.08 Aligned_cols=59 Identities=15% Similarity=0.429 Sum_probs=53.4
Q ss_pred cCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHH
Q psy13849 247 EGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAA 326 (342)
Q Consensus 247 e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 326 (342)
+.|++.+|+|||++++||||||+++|.+..| ++++++|.++|+.++.+
T Consensus 112 ~~W~f~~al~fs~tv~TTIGYG~i~P~T~~G--------------------------------r~~~i~YaliGIPl~li 159 (433)
T KOG1418|consen 112 QQWSFSSALLFSITVITTIGYGNIAPRTDAG--------------------------------RLFTILYALVGIPLMLL 159 (433)
T ss_pred cceecchhHhhhhheeeeccCCcccCCcCcc--------------------------------hhHHHHHHHHhhHHHHH
Confidence 4599999999999999999999999999887 89999999999999999
Q ss_pred HHHHHHHHHhh
Q psy13849 327 SINLLVLRFMT 337 (342)
Q Consensus 327 ~~~~~~~~~~~ 337 (342)
+++-+++.+..
T Consensus 160 ~l~~~g~~l~~ 170 (433)
T KOG1418|consen 160 ILADIGKFLAD 170 (433)
T ss_pred HHHHHHHHHHH
Confidence 99888776644
No 15
>KOG3684|consensus
Probab=98.40 E-value=2e-07 Score=91.30 Aligned_cols=87 Identities=17% Similarity=0.359 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheee
Q psy13849 8 TLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFS 87 (342)
Q Consensus 8 ~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~ 87 (342)
...|.++.+.++++-+|++...|+.++.+.. .=++.+++|+.
T Consensus 254 g~vL~vftl~~Wii~sW~~~~cER~~~~~~~--------------------------------------~~~~~nsmWli 295 (489)
T KOG3684|consen 254 GTVLLVFTLSLWIIASWMLRQCERYHDSQDV--------------------------------------TINYLNSMWLI 295 (489)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcchhh--------------------------------------HHHHHhhHHHH
Confidence 4578888999999999999999977654331 12578999999
Q ss_pred eeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 88 TVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 88 ~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
.+|..+|||||++|.|..||..|++-+++|-....++++.+...+
T Consensus 296 ~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 296 AITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred HHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887655
No 16
>KOG1419|consensus
Probab=98.37 E-value=2.7e-07 Score=92.07 Aligned_cols=68 Identities=25% Similarity=0.395 Sum_probs=52.0
Q ss_pred HHHHHHhhhhhhhhcccC-----------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhccc
Q psy13849 231 LSFIITTTGAAVFSKYEG-----------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLAN 299 (342)
Q Consensus 231 ~~~~~~~~ga~~~~~~e~-----------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~ 299 (342)
+.++.+++.+.+.+..|. -||-||+||..||+|||||||.+|++..+
T Consensus 239 IGFL~LIfsSflVYLaEKd~~~e~~n~~F~TyADALWWG~ITltTIGYGDk~P~TWlG---------------------- 296 (654)
T KOG1419|consen 239 IGFLVLIFSSFLVYLAEKDAQGEGTNDEFPTYADALWWGVITLTTIGYGDKTPQTWLG---------------------- 296 (654)
T ss_pred HHHHHHHHHHHHHHHhhcccccccccccchhHHHHHHhhheeEEeeccCCcCcccchh----------------------
Confidence 344444556666666664 37999999999999999999999999887
Q ss_pred ccccccCcchhHHHHHHHHHHHHHHHHHHHH
Q psy13849 300 DHALEQKPGYVALSLVFILFGLAVVAASINL 330 (342)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (342)
+++++.+-++|+.+.|.--..
T Consensus 297 ----------r~laa~fsligiSFFALPAGI 317 (654)
T KOG1419|consen 297 ----------RLLAACFSLIGISFFALPAGI 317 (654)
T ss_pred ----------HHHHHHHHHHHHHHHhccccc
Confidence 677777777787777654443
No 17
>KOG4390|consensus
Probab=98.23 E-value=5.7e-07 Score=86.40 Aligned_cols=53 Identities=26% Similarity=0.468 Sum_probs=46.2
Q ss_pred CCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHH
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIG 129 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g 129 (342)
.=+.+.|+||+++|+||.||||++|+|.+||+|..+..+.|+-+.++....+-
T Consensus 354 FTsIPaaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIV 406 (632)
T KOG4390|consen 354 FTSIPAAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIV 406 (632)
T ss_pred cccCcHhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEE
Confidence 34688999999999999999999999999999999999999887766554443
No 18
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=98.18 E-value=8.4e-07 Score=95.73 Aligned_cols=54 Identities=26% Similarity=0.549 Sum_probs=44.4
Q ss_pred ccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHHH
Q psy13849 251 YFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINL 330 (342)
Q Consensus 251 ~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (342)
|..|+||+++|+|||||||+.|.+..+ ++++++++++|+++.|++++.
T Consensus 251 Yi~slYwai~TmtTVGYGDi~p~t~~E--------------------------------~i~~i~~ml~g~~~~a~~ig~ 298 (823)
T PLN03192 251 YISAIYWSITTMTTVGYGDLHAVNTIE--------------------------------MIFIIFYMLFNLGLTAYLIGN 298 (823)
T ss_pred HHHHHHHHHHHHhhccCCCcCCCccch--------------------------------HHHHHHHHHHHHHHHHHHHHH
Confidence 555899999999999999999988766 778888888888888888777
Q ss_pred HHHHHh
Q psy13849 331 LVLRFM 336 (342)
Q Consensus 331 ~~~~~~ 336 (342)
++.-+.
T Consensus 299 i~~li~ 304 (823)
T PLN03192 299 MTNLVV 304 (823)
T ss_pred HHHHHH
Confidence 765443
No 19
>KOG1545|consensus
Probab=98.08 E-value=2.8e-06 Score=81.08 Aligned_cols=29 Identities=38% Similarity=0.662 Sum_probs=27.3
Q ss_pred CCccceeeEEeecceeeeccccccccccc
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVALQNDH 277 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~~~~~ 277 (342)
-+..||+||+++|+|||||||++|.+..|
T Consensus 392 ~SIPdaFWwavVTMTTVGYGDm~P~TvgG 420 (507)
T KOG1545|consen 392 SSIPDAFWWAVVTMTTVGYGDMVPVTVGG 420 (507)
T ss_pred CcCcccceEEEEEEEeeccccceecccCc
Confidence 46899999999999999999999999887
No 20
>KOG1420|consensus
Probab=97.91 E-value=1.3e-05 Score=80.59 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=50.3
Q ss_pred HhhhhhhhhcccC-------------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccc
Q psy13849 236 TTTGAAVFSKYEG-------------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHA 302 (342)
Q Consensus 236 ~~~ga~~~~~~e~-------------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~ 302 (342)
++.+|.+.+..|+ .+|.|+.||..+|++||||||..-.+.-|
T Consensus 261 wltaag~ihllensgdp~~~f~n~hrltyw~cvyfl~vtmstvgygdvyc~t~lg------------------------- 315 (1103)
T KOG1420|consen 261 WLTAAGFIHLLENSGDPWENFQNNHRLTYWECVYFLMVTMSTVGYGDVYCKTTLG------------------------- 315 (1103)
T ss_pred HHhhcceeehhhcCCChhHhccCcccchhhheeeeeEEEeeeccccceeehhhhh-------------------------
Confidence 4456777777774 37999999999999999999999887766
Q ss_pred cccCcchhHHHHHHHHHHHHHHHHHH
Q psy13849 303 LEQKPGYVALSLVFILFGLAVVAASI 328 (342)
Q Consensus 303 ~~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (342)
+.+..++++.|+|+.|..+
T Consensus 316 -------rlfmvffil~glamfasyv 334 (1103)
T KOG1420|consen 316 -------RLFMVFFILGGLAMFASYV 334 (1103)
T ss_pred -------HHHHHHHHHHHHHHHHhhh
Confidence 7888888899988877654
No 21
>KOG0498|consensus
Probab=97.75 E-value=1.2e-05 Score=84.46 Aligned_cols=58 Identities=22% Similarity=0.430 Sum_probs=53.5
Q ss_pred ccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHH
Q psy13849 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFAS 137 (342)
Q Consensus 80 ~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~ 137 (342)
|.-|+||+++++||+|||+.+|.+..-++|+|+++++|..+++++++++...+.+...
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~ts 352 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTS 352 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhH
Confidence 7889999999999999999999999999999999999999999999999877765443
No 22
>KOG0501|consensus
Probab=97.43 E-value=0.0001 Score=74.50 Aligned_cols=54 Identities=20% Similarity=0.483 Sum_probs=48.0
Q ss_pred CccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
-|.+|+||+++.+||||+||++|.|+..|+|.+..+++|--+.+.+++.+...+
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~ 476 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTII 476 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 489999999999999999999999999999999999999888777776665444
No 23
>KOG4390|consensus
Probab=97.22 E-value=2.7e-05 Score=75.08 Aligned_cols=45 Identities=31% Similarity=0.481 Sum_probs=34.8
Q ss_pred HHHHhhhhhhhhcccC------CCccceeeEEeecceeeeccccccccccc
Q psy13849 233 FIITTTGAAVFSKYEG------WSYFDSFYYCFVTLTTIGFGDYVALQNDH 277 (342)
Q Consensus 233 ~~~~~~ga~~~~~~e~------~~~~~a~y~~~itltTvG~GD~~p~~~~~ 277 (342)
+.++++.+++|+.-.+ -+..-|||++++|+||.||||+||.+-+|
T Consensus 333 MAIIIFATvMfYAEKg~~at~FTsIPaaFWYTIVTmTTLGYGDMVp~TIaG 383 (632)
T KOG4390|consen 333 MAIIIFATVMFYAEKGSSATKFTSIPAAFWYTIVTMTTLGYGDMVPSTIAG 383 (632)
T ss_pred HHHHHHHHHHHhhhccccccccccCcHhHhhheeeeeeccccccchHHHHH
Confidence 3444456666665444 35778999999999999999999999887
No 24
>KOG0498|consensus
Probab=97.19 E-value=0.00014 Score=76.56 Aligned_cols=55 Identities=27% Similarity=0.450 Sum_probs=48.2
Q ss_pred ccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHHH
Q psy13849 251 YFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINL 330 (342)
Q Consensus 251 ~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (342)
|.-|+||++.||||+||||..|.+..+ ++|+++++++|+.+.|++|.-
T Consensus 295 Y~~aLyw~l~tLstvG~g~~~s~~~~E--------------------------------~iFsi~~mi~GllL~A~lIGN 342 (727)
T KOG0498|consen 295 YVYALYWGLSTLSTVGYGLVHANNMGE--------------------------------KIFSIFIMLFGLLLFAYLIGN 342 (727)
T ss_pred HHHHHHHHhhHhhhccCCccCCCCcHH--------------------------------HHHHHHHHHHhHHHHHHHHhh
Confidence 677999999999999999999877655 899999999999999999988
Q ss_pred HHHHHhh
Q psy13849 331 LVLRFMT 337 (342)
Q Consensus 331 ~~~~~~~ 337 (342)
|+...-.
T Consensus 343 mt~~iqs 349 (727)
T KOG0498|consen 343 MTALLQS 349 (727)
T ss_pred HHHhHHH
Confidence 8765543
No 25
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=96.58 E-value=0.0013 Score=63.88 Aligned_cols=51 Identities=29% Similarity=0.385 Sum_probs=40.3
Q ss_pred CccchheeeeeeEEeecccC--CCCCcccchhhhhHHHhhhhhhhhhhhhHHH
Q psy13849 79 KFAGAFYFSTVVLAMIGYGH--STPMTIGGKAFCMAYAMVGIPLGLVMFQSIG 129 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~--~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g 129 (342)
+|.+|++|++-|.||||||. +.|..+.+-++..+=+++|+-+.+++.+.+-
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvf 136 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYAIFLVTIQSLVGLLLDAFMTGLVF 136 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999 6788899999999999999888777655443
No 26
>KOG3684|consensus
Probab=96.52 E-value=0.0017 Score=64.27 Aligned_cols=71 Identities=15% Similarity=0.301 Sum_probs=57.5
Q ss_pred HHHHhhhhhhhhcccC--------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 233 FIITTTGAAVFSKYEG--------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 233 ~~~~~~ga~~~~~~e~--------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
+.++++.+.++...|. -+|.++.|+..+|.-+|||||++|+|.-|
T Consensus 262 l~~Wii~sW~~~~cER~~~~~~~~~~~~nsmWli~iTFlsiGYGDiVP~TycG--------------------------- 314 (489)
T KOG3684|consen 262 LSLWIIASWMLRQCERYHDSQDVTINYLNSMWLIAITFLSIGYGDIVPNTYCG--------------------------- 314 (489)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHhhHHHHHHHHhhcccCcccCCcccc---------------------------
Confidence 3445566777766662 35999999999999999999999999988
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVLRF 335 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 335 (342)
+.+++.--++|....|+.+.++.|..
T Consensus 315 -----r~v~l~tGivGa~~sallvAvisRKL 340 (489)
T KOG3684|consen 315 -----RGVALLTGIVGAGCSSLLVAVIARKL 340 (489)
T ss_pred -----chHHHHhhhhhhhHHHHHHHHHHHHH
Confidence 77888888889888888888887654
No 27
>KOG3193|consensus
Probab=96.27 E-value=0.0093 Score=60.22 Aligned_cols=29 Identities=34% Similarity=0.700 Sum_probs=26.1
Q ss_pred CCccceeeEEeecceeeeccccccccccc
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVALQNDH 277 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~~~~~ 277 (342)
.+.+.++||..+|.+||||||.+|.-.+.
T Consensus 216 i~lf~s~y~v~vtfstvgygd~~pd~w~s 244 (1087)
T KOG3193|consen 216 IDLFTSFYFVMVTFSTVGYGDWYPDYWAS 244 (1087)
T ss_pred eeeeeeEEEEEEEEeeccccccccccchh
Confidence 68999999999999999999999975544
No 28
>KOG3193|consensus
Probab=96.01 E-value=0.023 Score=57.44 Aligned_cols=46 Identities=22% Similarity=0.408 Sum_probs=37.8
Q ss_pred CCCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhh
Q psy13849 74 AGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIP 119 (342)
Q Consensus 74 ~~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~ 119 (342)
.+.+-+...++||.++|.+||||||-.|.-.+.++..++.+.+.+.
T Consensus 212 ~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~ 257 (1087)
T KOG3193|consen 212 RGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALG 257 (1087)
T ss_pred cCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHh
Confidence 4456789999999999999999999999999998877665554433
No 29
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....
Probab=95.78 E-value=0.0098 Score=57.80 Aligned_cols=56 Identities=29% Similarity=0.370 Sum_probs=41.3
Q ss_pred CccceeeEEeecceeeeccccccc--ccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHH
Q psy13849 250 SYFDSFYYCFVTLTTIGFGDYVAL--QNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAAS 327 (342)
Q Consensus 250 ~~~~a~y~~~itltTvG~GD~~p~--~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 327 (342)
++.+|++|++.|+||||||...|. ...+ .++..+=.++|+.+.|.+
T Consensus 84 ~f~~aF~FSveT~tTIGYG~~~~~~~c~~a--------------------------------~~l~~~q~~~g~l~~a~~ 131 (336)
T PF01007_consen 84 SFTSAFLFSVETQTTIGYGSRYPTPECPYA--------------------------------IFLVTIQSLVGLLLDAFM 131 (336)
T ss_dssp THHHHHHHHHHHHTT---SSSEB-CSHHHH--------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred chhhheeEEEEEEEEeccCCcccCCCcchh--------------------------------HHHHHHHHHHHHHHHHHH
Confidence 799999999999999999985433 2222 456677888999999999
Q ss_pred HHHHHHHHhh
Q psy13849 328 INLLVLRFMT 337 (342)
Q Consensus 328 ~~~~~~~~~~ 337 (342)
..++-.|+-.
T Consensus 132 ~Glvfar~sr 141 (336)
T PF01007_consen 132 TGLVFARFSR 141 (336)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhcC
Confidence 9998877754
No 30
>KOG0501|consensus
Probab=95.38 E-value=0.013 Score=59.61 Aligned_cols=54 Identities=19% Similarity=0.477 Sum_probs=41.7
Q ss_pred CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHH
Q psy13849 250 SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASIN 329 (342)
Q Consensus 250 ~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 329 (342)
-|..++||+..++||||||.+.|.++.. ++|...-+++|-.+-|.+|.
T Consensus 423 ~YissLYfTMt~mttvGFGNiA~~TD~E--------------------------------KiF~v~mMii~aLLYAtIFG 470 (971)
T KOG0501|consen 423 AYISSLYFTMTCMTTVGFGNIAPNTDNE--------------------------------KIFGVCMMIIGALLYATIFG 470 (971)
T ss_pred eehhhhhhhhhhhhcccccccCCCccHH--------------------------------HHHHHHHHHHHHHHHHHHHh
Confidence 3788999999999999999999998876 66666666666666666666
Q ss_pred HHHHHH
Q psy13849 330 LLVLRF 335 (342)
Q Consensus 330 ~~~~~~ 335 (342)
-++.-+
T Consensus 471 ~vTTI~ 476 (971)
T KOG0501|consen 471 HVTTII 476 (971)
T ss_pred hHHHHH
Confidence 554433
No 31
>KOG3827|consensus
Probab=95.14 E-value=0.089 Score=51.29 Aligned_cols=49 Identities=22% Similarity=0.368 Sum_probs=35.6
Q ss_pred CccchheeeeeeEEeecccCCCCCc--ccchhhhhHHHhhhhhhhhhhhhH
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTPMT--IGGKAFCMAYAMVGIPLGLVMFQS 127 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P~T--~~gr~~~~~y~~~Gi~~~~~~~~~ 127 (342)
+|.+||.|++-|-||||||.-.+.. +.+-+..++=++.|.-+-+.+++.
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~ 162 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEECPEAIFLLVLQSILGVIINAFMVGA 162 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999887765 445555555566666555554433
No 32
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=88.92 E-value=0.11 Score=44.71 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=36.1
Q ss_pred CccchheeeeeeEEeecccCCCCC-----cccchhhhhHHHhhhh-hhhhhh
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTPM-----TIGGKAFCMAYAMVGI-PLGLVM 124 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P~-----T~~gr~~~~~y~~~Gi-~~~~~~ 124 (342)
++..|+|+...++||.|+||..|. +..+.++.+.|.+++. -+..++
T Consensus 145 ~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nll 196 (200)
T PF00520_consen 145 SFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLL 196 (200)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHH
Confidence 689999999999999999999998 7788888866665554 333333
No 33
>KOG0500|consensus
Probab=87.97 E-value=0.39 Score=48.35 Aligned_cols=54 Identities=22% Similarity=0.477 Sum_probs=48.2
Q ss_pred ccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 80 ~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
|.-|+||+.-|+|||| --..|.|...-.|.++=.++|+-+++.+++++|+.+..
T Consensus 184 Y~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGsmVtn 237 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGSMVTN 237 (536)
T ss_pred HHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhHHHHh
Confidence 3469999999999999 56689999999999999999999999999999987654
No 34
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=87.36 E-value=0.37 Score=47.73 Aligned_cols=35 Identities=14% Similarity=0.193 Sum_probs=24.1
Q ss_pred CCCccchheeeeeeEEeecccCCCC---Ccccchhhhh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTP---MTIGGKAFCM 111 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P---~T~~gr~~~~ 111 (342)
.-++.||+|-++.-+||-|.--+.| .++.+++.-.
T Consensus 13 ~~s~~dA~FeavSa~ttTGltv~~~~~~~~~~~~~~r~ 50 (390)
T TIGR00933 13 PLSFIDALFTATSAVTTTGLTVLDTLESLPKAGLFLRS 50 (390)
T ss_pred CCCHHHHHHhhHhhcccCCCeEccChhhcCHhHHHHHH
Confidence 4689999999999999999543322 3445555433
No 35
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=85.88 E-value=0.79 Score=39.35 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=22.9
Q ss_pred CCccceeeEEeecceeeeccccccc
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVAL 273 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~ 273 (342)
-++..|+|+.+.++++.|+||..|.
T Consensus 144 ~~~~~s~~~~~~~~t~~~~~~~~~~ 168 (200)
T PF00520_consen 144 DSFGESLYWLFQTMTGEGWGDVMPS 168 (200)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCHHH
T ss_pred ccccccccccccccccCCccccccc
Confidence 3689999999999999999999986
No 36
>TIGR00933 2a38 potassium uptake protein, TrkH family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system.
Probab=83.82 E-value=0.57 Score=46.45 Aligned_cols=42 Identities=10% Similarity=0.175 Sum_probs=32.8
Q ss_pred CCCccchheeeeeeEEeecccCC--CCCcccchhhhhHHHhhhh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHS--TPMTIGGKAFCMAYAMVGI 118 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~--~P~T~~gr~~~~~y~~~Gi 118 (342)
.....++.++..++.+|-||... .--++.++++.++.+++|=
T Consensus 229 ~~~~~~~~f~~~s~~~T~Gfst~d~~~~~~~~~lll~~lMfIGg 272 (390)
T TIGR00933 229 FGALLLSAFFQSSTLRTAGFSTIDFAALPTATLVLLLLLMFIGG 272 (390)
T ss_pred HHHHHHHHHHHHhhccCCCccccChhhcCHHHHHHHHHHHHHcC
Confidence 34678899999999999998743 4445678888888888773
No 37
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=75.81 E-value=0.64 Score=38.70 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=40.1
Q ss_pred CCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
.+++.++++++..+++. +-++..|++..+|++.+.+.++.+-+....-+++...+.
T Consensus 42 ~~~~~~~~~~~~~~~~~-q~~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt 97 (148)
T PF00060_consen 42 RFSLSNSFWYTFGTLLQ-QGSSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLT 97 (148)
T ss_dssp HHHHHHHHHHCCCCCHH-HHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhcc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45678889999888777 677899999999999999999998887777666665543
No 38
>KOG3827|consensus
Probab=70.90 E-value=18 Score=35.77 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.4
Q ss_pred CccceeeEEeecceeeeccccccccc
Q psy13849 250 SYFDSFYYCFVTLTTIGFGDYVALQN 275 (342)
Q Consensus 250 ~~~~a~y~~~itltTvG~GD~~p~~~ 275 (342)
++.-||=|++-|.+|||||--.+..+
T Consensus 112 sf~sAFLFSiETQtTIGYG~R~vTee 137 (400)
T KOG3827|consen 112 SFTSAFLFSIETQTTIGYGFRYVTEE 137 (400)
T ss_pred chhhhheeeeeeeeeeeccccccCcc
Confidence 67889999999999999998877543
No 39
>PRK05482 potassium-transporting ATPase subunit A; Provisional
Probab=63.47 E-value=4.3 Score=42.07 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=28.8
Q ss_pred ccchheeeeeeEEeec-ccCCC-CCcccchhhhhHHHhhh
Q psy13849 80 FAGAFYFSTVVLAMIG-YGHST-PMTIGGKAFCMAYAMVG 117 (342)
Q Consensus 80 ~~~a~~f~~~~~tTiG-yG~~~-P~T~~gr~~~~~y~~~G 117 (342)
..+|+|-+.|+-||-| +-.+. ..|+.|.++.++.+++|
T Consensus 329 ~~salF~svTtrtTaG~fNsm~dsltp~~~lv~m~lMfIG 368 (559)
T PRK05482 329 AASALFAVVTTAASTGAVNAMHDSLTPLGGLVPLLNMQLG 368 (559)
T ss_pred HHHHHHHHHHhhhhcchHHHHHHhhccHHHHHHHHHHHhC
Confidence 4678888888887888 44443 34678899999999997
No 40
>KOG0499|consensus
Probab=58.17 E-value=4.9 Score=41.74 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=45.6
Q ss_pred CccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
.|.-++||+.-|.+||| |+..|+|..--+|..+=-+.|+-++.++++.+-+.+
T Consensus 403 ~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf~~~~w~mGVFvFslliGQmRDvi 455 (815)
T KOG0499|consen 403 EYIRCYYFAVKTLITIG-GLPEPQTLFEIVFQLLNWFMGVFVFSLLIGQMRDVI 455 (815)
T ss_pred ceeeehhhHHHHHHHhc-CCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999 999999988888887777889999988887765544
No 41
>PRK10750 potassium transporter; Provisional
Probab=51.41 E-value=42 Score=34.38 Aligned_cols=39 Identities=13% Similarity=0.243 Sum_probs=26.6
Q ss_pred CccchheeeeeeEEeecccCC--CCCcccchhhhhHHHhhh
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHS--TPMTIGGKAFCMAYAMVG 117 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~--~P~T~~gr~~~~~y~~~G 117 (342)
.+.+|+|-+.+.+||-||... .--++..+.+.++.+++|
T Consensus 304 ~l~~s~Fq~vS~~tTtGF~t~d~~~w~~~~~~ll~~lMfIG 344 (483)
T PRK10750 304 TLNQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIG 344 (483)
T ss_pred HHHHHHHeeeecccCCCCCCCChhhccHHHHHHHHHHHHHc
Confidence 356777888888899998854 222344677777777666
No 42
>PRK10750 potassium transporter; Provisional
Probab=49.28 E-value=16 Score=37.48 Aligned_cols=49 Identities=20% Similarity=0.346 Sum_probs=30.5
Q ss_pred ccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhc
Q psy13849 246 YEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGL 297 (342)
Q Consensus 246 ~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~ 297 (342)
..+-+.+||+.-++.+++|=||- |..+.-.+.++|.......+.|++|-
T Consensus 202 ~~Gm~~fdAi~ha~saisTgGFs---~~~~si~~~~~~~i~~v~~~~milgg 250 (483)
T PRK10750 202 FAGMDAFDAIGHSFSTIAIGGFS---THDASIGYFDSPTINTIIAIFLLISG 250 (483)
T ss_pred HcCCcHHHHHHHHHHHHhccCcC---CCccccccccCHHHHHHHHHHHHHHH
Confidence 34788999999999888888875 33332334456654444444444443
No 43
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=48.33 E-value=1.2e+02 Score=23.07 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=6.8
Q ss_pred HHcCCCHHHHHHH
Q psy13849 50 RKYNISQIDYHML 62 (342)
Q Consensus 50 ~~~n~~~~~~~~l 62 (342)
+..+..++|....
T Consensus 45 ~e~gy~e~~I~~i 57 (85)
T PF11337_consen 45 QEQGYKESDIKSI 57 (85)
T ss_pred HHcCCcHHHhhhh
Confidence 4455666665443
No 44
>KOG0500|consensus
Probab=40.93 E-value=15 Score=37.38 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=19.5
Q ss_pred ccceeeEEeecceeeeccccccccccc
Q psy13849 251 YFDSFYYCFVTLTTIGFGDYVALQNDH 277 (342)
Q Consensus 251 ~~~a~y~~~itltTvG~GD~~p~~~~~ 277 (342)
|.-++|||--|+||+|-- +.|.++.+
T Consensus 184 Y~~S~YWStLTlTTiGe~-P~P~t~~e 209 (536)
T KOG0500|consen 184 YLYSLYWSTLTLTTIGEQ-PPPVTSSE 209 (536)
T ss_pred HHHHHHHHhhhhhhccCC-CCCCcCch
Confidence 556899999999999854 45655544
No 45
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.82 E-value=43 Score=28.74 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=26.3
Q ss_pred CCccchhHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHH
Q psy13849 1 MRRQNVRTLSL-VVCTFTYLLVGAAVFDALESNTERRRWELLQ 42 (342)
Q Consensus 1 ~k~~~~r~~~l-~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~ 42 (342)
||++....+.. .++++..++.++..|+..+.|.+..+.+..+
T Consensus 1 ~Rkk~~~~i~ii~viflai~~s~~~~~~~s~~P~~~~~~qA~~ 43 (161)
T COG5353 1 MRKKHLIIIIIILVIFLAIILSIALFFWKSMKPYHEAEEQAID 43 (161)
T ss_pred CCceEeeeehhHHHHHHHHHHHHHHHHhHhcCccchhHHHHHH
Confidence 55544333333 3445556667899999999998765554433
No 46
>KOG4440|consensus
Probab=40.46 E-value=9.8 Score=39.81 Aligned_cols=58 Identities=21% Similarity=0.290 Sum_probs=49.8
Q ss_pred CCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 75 GPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 75 ~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
++.-++.+|+||+.-++..-|-|+-+|++-..|++.|+|+-+.+...+..-++++..+
T Consensus 609 e~alnlssAmWF~WGVLLNSGigEgtPRSfSARvLGmVWaGFaMIiVASYTANLAAFL 666 (993)
T KOG4440|consen 609 EDALNLSSAMWFSWGVLLNSGIGEGTPRSFSARVLGMVWAGFAMIIVASYTANLAAFL 666 (993)
T ss_pred hhhcchhhhHHHHhHhhhccccCCCCCcchhHHHHHHHHhhhheeeehhhhhhhhhhe
Confidence 4567899999999999999999999999999999999999888777766666666544
No 47
>PTZ00444 hypothetical protein; Provisional
Probab=39.53 E-value=1.7e+02 Score=25.99 Aligned_cols=62 Identities=16% Similarity=0.229 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHH--------------HcCCCHHHHHHHHHHHHH
Q psy13849 7 RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLR--------------KYNISQIDYHMLEIVVIE 68 (342)
Q Consensus 7 r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~--------------~~n~~~~~~~~l~~~~~~ 68 (342)
.++.++++++.|+-.+|.++-+--...-..+-..++..-++++. -..+++++++.+.+.+.+
T Consensus 5 ~~~~~~~l~~~~~~~~a~l~p~~~k~~~~~q~~iikDia~e~k~~~e~lPt~~~v~~~~~~id~e~~~kl~~~i~~ 80 (184)
T PTZ00444 5 SLLFLLLLVFSYINFSACLLPWTKKRKAENQMGLIKDIAKELKLASETLPTPEQVSAKIHRIDKEVIKKLDKDIIK 80 (184)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46778888899999999998765543333332333333333322 235677778877766543
No 48
>PHA02669 hypothetical protein; Provisional
Probab=37.42 E-value=65 Score=28.05 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHhccchHHHhH
Q psy13849 13 VCTFTYLLVGAAVFDALESNTERRRW 38 (342)
Q Consensus 13 ~~~i~yl~~Ga~iF~~lE~~~e~~~~ 38 (342)
+++.++.+.||+++-++|-.-..++.
T Consensus 9 iIvavi~LTgAaiYlLiEiGLAaERa 34 (210)
T PHA02669 9 IIVAVIYLTGAAIYLLIEIGLAAERA 34 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445557799999999966554443
No 49
>KOG0499|consensus
Probab=37.31 E-value=26 Score=36.61 Aligned_cols=28 Identities=36% Similarity=0.532 Sum_probs=21.9
Q ss_pred cCCCccceeeEEeecceeeeccccccccc
Q psy13849 247 EGWSYFDSFYYCFVTLTTIGFGDYVALQN 275 (342)
Q Consensus 247 e~~~~~~a~y~~~itltTvG~GD~~p~~~ 275 (342)
||-.|.-++||+.-|++||| |..-|.+.
T Consensus 400 ~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~ 427 (815)
T KOG0499|consen 400 EGNEYIRCYYFAVKTLITIG-GLPEPQTL 427 (815)
T ss_pred CCCceeeehhhHHHHHHHhc-CCCCcchH
Confidence 34579999999999999999 55556543
No 50
>KOG3676|consensus
Probab=35.87 E-value=45 Score=35.96 Aligned_cols=64 Identities=28% Similarity=0.409 Sum_probs=40.8
Q ss_pred CccceeeEEeecc--eeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHH
Q psy13849 250 SYFDSFYYCFVTL--TTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAAS 327 (342)
Q Consensus 250 ~~~~a~y~~~itl--tTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 327 (342)
+..|++...+.|+ .|||+||..-.++.. |+.+. +.++..+-+++-+-++-|+
T Consensus 586 ~~~ds~~~~~l~lf~ftig~~dl~~~~~~~-------~~~~~-------------------kilfv~y~ilv~ILllNML 639 (782)
T KOG3676|consen 586 NPYDSFSTFLLTLFEFTIGMGDLEACENTD-------YPVLF-------------------KILFVAYMILVTILLLNML 639 (782)
T ss_pred ChhhHHHHHHHHHHHHhhhhhhhhhccccc-------chHHH-------------------HHHHHHHHHHHHHHHHHHH
Confidence 3456655556666 689999987654432 32222 2455555566777788888
Q ss_pred HHHHHHHHhhhc
Q psy13849 328 INLLVLRFMTII 339 (342)
Q Consensus 328 ~~~~~~~~~~~~ 339 (342)
+-+|++..-++.
T Consensus 640 IAMMg~Ty~~Va 651 (782)
T KOG3676|consen 640 IAMMGNTYETVA 651 (782)
T ss_pred HHHhhhHHHHHH
Confidence 888888776654
No 51
>COG3462 Predicted membrane protein [Function unknown]
Probab=33.58 E-value=1.9e+02 Score=23.57 Aligned_cols=45 Identities=13% Similarity=0.130 Sum_probs=25.6
Q ss_pred HHHHHHHhccchHH--HhH-HHHHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy13849 22 GAAVFDALESNTER--RRW-ELLQSFRDEMLRKY---NISQIDYHMLEIVV 66 (342)
Q Consensus 22 Ga~iF~~lE~~~e~--~~~-~~~~~~~~~l~~~~---n~~~~~~~~l~~~~ 66 (342)
=-++|..+++.+.. ..+ +..+...+.+++.| .+||||+++..+.+
T Consensus 65 vvfm~~~~g~~r~~~~~d~~e~~sRA~eIlkER~AkGEItEEEY~r~~~~i 115 (117)
T COG3462 65 VVFMFYILGAVRRGSDDDDAERGSRAEEILKERYAKGEITEEEYRRIIRTI 115 (117)
T ss_pred HHHHHHHHHHhcccchhcccccccHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 34566666643322 222 33344556667766 58999998765543
No 52
>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory. There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....
Probab=33.47 E-value=48 Score=27.14 Aligned_cols=52 Identities=25% Similarity=0.211 Sum_probs=30.1
Q ss_pred CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHH
Q psy13849 250 SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASIN 329 (342)
Q Consensus 250 ~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 329 (342)
+..+++++++.++.. +-++..|.+..+ +++.++|.++.+.+.+....
T Consensus 44 ~~~~~~~~~~~~~~~-q~~~~~~~s~s~--------------------------------Ril~~~w~l~~lil~~~Yta 90 (148)
T PF00060_consen 44 SLSNSFWYTFGTLLQ-QGSSIRPRSWSG--------------------------------RILLAFWWLFSLILIASYTA 90 (148)
T ss_dssp HHHHHHHHCCCCCHH-HHH------HHH--------------------------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhcc-ccccccccchHH--------------------------------HHHHHHHHHHHHHHHHHHHH
Confidence 356667776666555 445556654443 78888888888887777655
Q ss_pred HHHHH
Q psy13849 330 LLVLR 334 (342)
Q Consensus 330 ~~~~~ 334 (342)
-+...
T Consensus 91 ~L~s~ 95 (148)
T PF00060_consen 91 NLTSF 95 (148)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 53
>KOG1052|consensus
Probab=23.40 E-value=82 Score=33.23 Aligned_cols=56 Identities=11% Similarity=0.131 Sum_probs=44.9
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
..|+..+++|+++.++..-|-+ ..|++..+|++...|.++++-+....-+++...+
T Consensus 378 ~~~~~~~~~~~~~~~~~~q~~~-~~p~~~~~Rll~~~w~~~~lil~ssYTa~L~a~L 433 (656)
T KOG1052|consen 378 SLFSLLNCLWLTVGSLLQQGSD-EIPRSLSTRLLLGAWWLFVLILISSYTANLTAFL 433 (656)
T ss_pred eEeecccchhhhhHHHhccCCC-ccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888889988888877755 9999999999999999999876666555665444
Done!