Query psy13849
Match_columns 342
No_of_seqs 305 out of 2840
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13849.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13849hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3um7_A Potassium channel subfa 100.0 3.7E-45 1.3E-49 345.7 11.1 244 7-338 31-286 (309)
2 3ukm_A Potassium channel subfa 100.0 4.1E-45 1.4E-49 340.7 10.9 242 3-333 8-259 (280)
3 3ldc_A Calcium-gated potassium 99.7 3E-17 1E-21 125.9 3.5 80 7-132 2-81 (82)
4 2k1e_A Water soluble analogue 99.6 2.1E-16 7.1E-21 126.3 6.0 88 9-135 9-96 (103)
5 3eff_K Voltage-gated potassium 99.6 1.1E-16 3.7E-21 134.7 4.0 91 8-137 8-98 (139)
6 3ouf_A Potassium channel prote 99.6 1.5E-16 5.3E-21 125.8 4.0 81 7-133 6-86 (97)
7 2q67_A Potassium channel prote 99.6 1.6E-16 5.5E-21 129.3 3.5 79 9-133 25-103 (114)
8 3ldc_A Calcium-gated potassium 99.6 2.4E-16 8.3E-21 120.8 2.7 72 233-336 11-82 (82)
9 3ouf_A Potassium channel prote 99.6 7.5E-16 2.5E-20 121.8 3.3 75 230-336 12-86 (97)
10 2ih3_C Voltage-gated potassium 99.5 2.7E-15 9.3E-20 123.5 5.3 85 12-135 33-117 (122)
11 2q67_A Potassium channel prote 99.5 2.2E-15 7.5E-20 122.6 4.0 75 230-336 29-103 (114)
12 3vou_A ION transport 2 domain 99.5 1.7E-15 5.7E-20 128.8 3.0 77 9-131 28-104 (148)
13 2a9h_A Voltage-gated potassium 99.5 2.1E-15 7E-20 129.2 2.9 86 10-134 54-139 (155)
14 2k1e_A Water soluble analogue 99.5 4.3E-15 1.5E-19 118.6 3.9 76 231-338 14-96 (103)
15 4h33_A LMO2059 protein; bilaye 99.5 2.5E-15 8.5E-20 126.2 0.5 57 77-133 41-97 (137)
16 3eff_K Voltage-gated potassium 99.5 8.2E-15 2.8E-19 123.1 2.6 78 226-335 9-93 (139)
17 3vou_A ION transport 2 domain 99.5 1.4E-14 4.9E-19 123.0 3.6 73 228-332 30-102 (148)
18 4h33_A LMO2059 protein; bilaye 99.4 2.4E-14 8.3E-19 120.1 3.1 69 237-337 30-98 (137)
19 2ih3_C Voltage-gated potassium 99.4 2.8E-14 9.5E-19 117.4 3.2 76 232-339 36-118 (122)
20 2a9h_A Voltage-gated potassium 99.4 4.4E-14 1.5E-18 120.9 3.5 76 232-339 59-141 (155)
21 3pjs_K KCSA, voltage-gated pot 99.4 1.1E-15 3.7E-20 132.4 -8.1 85 12-135 39-123 (166)
22 3pjs_K KCSA, voltage-gated pot 99.3 6.8E-14 2.3E-18 121.1 -2.6 70 232-333 42-118 (166)
23 3um7_A Potassium channel subfa 99.3 3E-13 1E-17 127.7 1.2 77 12-134 203-285 (309)
24 1orq_C Potassium channel; volt 99.3 9.5E-13 3.2E-17 118.5 4.1 85 11-134 136-220 (223)
25 3ukm_A Potassium channel subfa 99.3 1E-12 3.4E-17 122.4 3.7 78 11-133 178-262 (280)
26 1lnq_A MTHK channels, potassiu 99.1 4.7E-13 1.6E-17 127.6 -6.5 77 12-134 24-100 (336)
27 1orq_C Potassium channel; volt 99.1 1.7E-11 5.8E-16 110.3 4.1 74 232-337 140-220 (223)
28 1lnq_A MTHK channels, potassiu 99.1 2.7E-12 9.4E-17 122.3 -5.1 67 234-332 29-95 (336)
29 4gx0_A TRKA domain protein; me 99.0 9.7E-11 3.3E-15 119.1 5.3 89 4-132 15-105 (565)
30 1xl4_A Inward rectifier potass 99.0 6.3E-11 2.2E-15 111.7 3.3 59 76-134 79-137 (301)
31 3beh_A MLL3241 protein; transm 99.0 1.1E-10 3.8E-15 111.9 3.4 87 10-135 131-217 (355)
32 2qks_A KIR3.1-prokaryotic KIR 98.9 2.9E-10 1E-14 108.0 3.5 59 76-134 75-133 (321)
33 1p7b_A Integral membrane chann 98.9 1.7E-10 5.8E-15 110.1 1.8 59 76-134 93-151 (333)
34 3beh_A MLL3241 protein; transm 98.9 4.2E-10 1.5E-14 107.8 3.9 74 232-337 136-216 (355)
35 4gx0_A TRKA domain protein; me 98.9 4.1E-10 1.4E-14 114.5 3.5 63 236-330 31-99 (565)
36 1xl4_A Inward rectifier potass 98.9 7.8E-10 2.7E-14 104.3 3.9 57 249-337 81-137 (301)
37 1p7b_A Integral membrane chann 98.8 2E-09 6.7E-14 102.8 5.2 72 235-338 74-152 (333)
38 2qks_A KIR3.1-prokaryotic KIR 98.7 4.9E-09 1.7E-13 99.6 4.7 58 248-337 76-133 (321)
39 2r9r_B Paddle chimera voltage 98.7 6.7E-09 2.3E-13 104.8 3.5 60 77-136 373-432 (514)
40 2r9r_B Paddle chimera voltage 98.5 3.9E-08 1.3E-12 99.2 2.8 68 237-337 356-430 (514)
41 3sya_A G protein-activated inw 98.3 2.8E-07 9.6E-12 87.9 4.7 57 78-134 90-148 (340)
42 3spc_A Inward-rectifier K+ cha 98.2 6.3E-07 2.2E-11 85.6 4.1 54 79-132 94-149 (343)
43 3sya_A G protein-activated inw 98.1 2.2E-06 7.4E-11 81.7 4.8 57 249-337 90-148 (340)
44 3spc_A Inward-rectifier K+ cha 97.9 5.1E-06 1.7E-10 79.3 3.6 58 249-338 93-152 (343)
45 3rvy_A ION transport protein; 97.2 0.0001 3.5E-09 68.1 1.6 57 79-135 180-242 (285)
46 3rvy_A ION transport protein; 97.0 0.00027 9.1E-09 65.3 3.0 63 249-339 179-243 (285)
47 4dxw_A Navrh, ION transport pr 70.1 2.7 9.3E-05 36.6 3.2 62 250-338 165-226 (229)
48 3kg2_A Glutamate receptor 2; I 66.7 1.7 5.9E-05 45.0 1.2 56 77-133 561-616 (823)
49 3kg2_A Glutamate receptor 2; I 62.7 4.9 0.00017 41.5 3.8 53 251-336 564-616 (823)
50 4dxw_A Navrh, ION transport pr 49.3 4.7 0.00016 35.1 0.8 40 79-118 165-208 (229)
51 3pjz_A Potassium uptake protei 37.0 20 0.00069 35.4 3.3 38 80-117 307-346 (494)
52 2lx0_A Membrane fusion protein 25.5 1E+02 0.0035 17.8 4.4 24 8-31 8-31 (32)
No 1
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=100.00 E-value=3.7e-45 Score=345.66 Aligned_cols=244 Identities=30% Similarity=0.524 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHh-----CC------CCC
Q psy13849 7 RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRK-YNISQIDYHMLEIVVIEN-----KP------HKA 74 (342)
Q Consensus 7 r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~-~n~~~~~~~~l~~~~~~~-----~~------~~~ 74 (342)
..+.|++++++|+++||++|+.||+|+|.++++.+++.+++++++ .|++++|++++++.+.++ ++ +..
T Consensus 31 ~~l~Ll~~~~~YL~~GA~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~~~v~~A~~~Gv~~~~~~~~~~~ 110 (309)
T 3um7_A 31 TLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVADALGGGADPETQSTSQSS 110 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHHHHHHHHHHTTCCCSSCCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCCccccccCCCC
Confidence 356788899999999999999999999999988888888876655 479999999888776543 22 223
Q ss_pred CCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhhhccccccccch
Q psy13849 75 GPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEA 154 (342)
Q Consensus 75 ~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 154 (342)
+++|++.+|+||+.+|+|||||||++|.|+.||+||++|+++|||+++++++.+++.+.+..++..++.++...+++...
T Consensus 111 ~~~w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~~~~~~i~~le~~~~~~~~~~ 190 (309)
T 3um7_A 111 HSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPP 190 (309)
T ss_dssp --CCSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTTTC--C
T ss_pred CCCCChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhccccch
Confidence 46799999999999999999999999999999999999999999999999999999887765544444332221111000
Q ss_pred hhHHHHHhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCcccccccccccccchhhhhHHHHHhhHHHHH
Q psy13849 155 TEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFI 234 (342)
Q Consensus 155 ~~~~l~l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~e~~~~~~~~l~l~~~~~~~~ 234 (342)
... .....++.+.+..++
T Consensus 191 ~~~--------------------------------------------------------------~~~~~~l~~~~~~~~ 208 (309)
T 3um7_A 191 ELV--------------------------------------------------------------RVLSAMLFLLIGCLL 208 (309)
T ss_dssp CHH--------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred hHH--------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 000 000111122222345
Q ss_pred HHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHH
Q psy13849 235 ITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSL 314 (342)
Q Consensus 235 ~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~ 314 (342)
++++|+.+|+..|+|+|+||+||+++|+|||||||++|.++.+. .+|. |+++++
T Consensus 209 ~l~~ga~~~~~~E~~~~~da~y~~~vTltTvGyGd~~p~t~~g~--~~~~------------------------y~~~~~ 262 (309)
T 3um7_A 209 FVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQ--DSPA------------------------YQPLVW 262 (309)
T ss_dssp HTHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCSSCCTTCCTTC--CCST------------------------HHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHhheeccccCCCCCCCcccc--ccch------------------------HHHHHH
Confidence 56789999999999999999999999999999999999987662 2344 499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q psy13849 315 VFILFGLAVVAASINLLVLRFMTI 338 (342)
Q Consensus 315 ~~~~~g~~~~~~~~~~~~~~~~~~ 338 (342)
+|+++|+++++++++.+++.+...
T Consensus 263 ~~il~Gl~~~a~~~~~i~~~~~~~ 286 (309)
T 3um7_A 263 FWILLGLAYFASVLTTIGNWLRVV 286 (309)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988765444
No 2
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=340.71 Aligned_cols=242 Identities=27% Similarity=0.510 Sum_probs=184.8
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC--------CC
Q psy13849 3 RQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRK-YNISQIDYHMLEIVVIENKP--------HK 73 (342)
Q Consensus 3 ~~~~r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~-~n~~~~~~~~l~~~~~~~~~--------~~ 73 (342)
|++.++..|++++++|+++||++|+.||+|+|.++++.+++.++++.++ .|++++|++++.+.+.++.. ..
T Consensus 8 r~~~~l~lLil~~~~Yl~~GA~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~ 87 (280)
T 3ukm_A 8 NSATMFGFLVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQAS 87 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCC
Confidence 5678899999999999999999999999999999999998888888776 58999999998887665421 13
Q ss_pred CCCCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHHHHHHhhhccccccccc
Q psy13849 74 AGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAE 153 (342)
Q Consensus 74 ~~~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~ 153 (342)
..++|++.||+||+.+|+|||||||++|.|+.||+||++|+++|||+++++++.+++++..... ++..+..+.
T Consensus 88 ~~~~w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~~~~---~~~~~~~~~---- 160 (280)
T 3ukm_A 88 GNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITVHVT---RRPVLYFHI---- 160 (280)
T ss_dssp --CCSSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---STTTTTC------
T ss_pred CCCCCChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH----
Confidence 5678999999999999999999999999999999999999999999999999999876654321 110000000
Q ss_pred hhhHHHHHhhhHHHHHhhhhcchhcccccCCCccCcceeEEEeeeccccCcccccccccccccchhhhhHHHHHhhHHHH
Q psy13849 154 ATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSF 233 (342)
Q Consensus 154 ~~~~~l~l~~~~l~~i~~~~ga~if~~~E~Wsf~ds~YF~~itlTTIGyGD~vP~~~~l~~e~~~~~~~~l~l~~~~~~~ 233 (342)
.|... ..+.......+....+.+
T Consensus 161 -----------------------------~~~~~----------------------------~~~~~~~~~~~l~~~~~~ 183 (280)
T 3ukm_A 161 -----------------------------RWGFS----------------------------KQVVAIVHAVLLGFVTVS 183 (280)
T ss_dssp ---------------------------------C----------------------------CHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------HhcCC----------------------------hhHHHHHHHHHHHHHHHH
Confidence 00000 000001111222223344
Q ss_pred HHHhhhhhhhhccc-CCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHH
Q psy13849 234 IITTTGAAVFSKYE-GWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVAL 312 (342)
Q Consensus 234 ~~~~~ga~~~~~~e-~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~ 312 (342)
+++++|+.+|+..| +|+++||+|||++|+|||||||++|.++.+. +++ +.|+++
T Consensus 184 ~~~~~ga~~~~~~E~~~s~~da~y~~~iTltTvGyGD~~p~t~~~~--~~~-----------------------~l~r~~ 238 (280)
T 3ukm_A 184 CFFFIPAAVFSVLEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQ--KFR-----------------------ELYKIG 238 (280)
T ss_dssp HHTHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCCCCSCCSSCSSSC--TTH-----------------------HHHHHH
T ss_pred HHHhHHHHHHHHHhcCCchhhhhhheeeeeecccCCCCCCCCCccc--ccc-----------------------hhHHHH
Confidence 55678999999999 9999999999999999999999999987651 111 235999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy13849 313 SLVFILFGLAVVAASINLLVL 333 (342)
Q Consensus 313 ~~~~~~~g~~~~~~~~~~~~~ 333 (342)
+++|+++|++++++.++.+.+
T Consensus 239 ~~~~il~Gl~~~~~~~~~i~~ 259 (280)
T 3ukm_A 239 ITCYLLLGLIAMLVVLETFCE 259 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998643
No 3
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.66 E-value=3e-17 Score=125.91 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchhee
Q psy13849 7 RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYF 86 (342)
Q Consensus 7 r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f 86 (342)
|...++++++.+++.|+.+|+.+| +|++.||+||
T Consensus 2 ~~~~~~~l~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~yf 35 (82)
T 3ldc_A 2 PATRILLLVLAVIIYGTAGFHFIE----------------------------------------------GESWTVSLYW 35 (82)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------------CCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh----------------------------------------------cCCHHHHHHH
Confidence 345566777888999999999999 8999999999
Q ss_pred eeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 87 STVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 87 ~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
+.+|+|||||||+.|.|+.||+++++++++|++++.+.++.+++.+
T Consensus 36 ~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 36 TFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp HHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998887654
No 4
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.63 E-value=2.1e-16 Score=126.34 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeee
Q psy13849 9 LSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFST 88 (342)
Q Consensus 9 ~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~ 88 (342)
+..++.+++++++|+.+|+.+|+.. ++++.|++.+|+||+.
T Consensus 9 l~~~~~~~~~~~~~a~~~~~~E~~~---------------------------------------~~~~~~~~~~a~y~~~ 49 (103)
T 2k1e_A 9 QKAEEELQKVLEEASKKAVEAERGA---------------------------------------PGAALISYPDAIWWSV 49 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------TTCCCCCGGGTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCC---------------------------------------CCcccccHHHHHHHHH
Confidence 3456677888899999999999542 2334689999999999
Q ss_pred eeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHH
Q psy13849 89 VVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKF 135 (342)
Q Consensus 89 ~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~ 135 (342)
+|+|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+.
T Consensus 50 ~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 50 ETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp GGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred HHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888776543
No 5
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.63 E-value=1.1e-16 Score=134.68 Aligned_cols=91 Identities=16% Similarity=0.220 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheee
Q psy13849 8 TLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFS 87 (342)
Q Consensus 8 ~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~ 87 (342)
.+..++++++++++||++|+.+|++. ++...|++.+|+||+
T Consensus 8 ~~~~~~~~~~~~~~~a~~~~~~e~~~---------------------------------------~~~~~~~~~~a~yf~ 48 (139)
T 3eff_K 8 AGAATVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWS 48 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSC---------------------------------------TTCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---------------------------------------CCcccCCHHHHHHHH
Confidence 34556678889999999999999542 233469999999999
Q ss_pred eeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHHH
Q psy13849 88 TVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFAS 137 (342)
Q Consensus 88 ~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~~ 137 (342)
++|+|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+..+
T Consensus 49 ~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~~~~ 98 (139)
T 3eff_K 49 VETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGREQ 98 (139)
T ss_dssp HHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHH
T ss_pred heeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999877755443
No 6
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.62 E-value=1.5e-16 Score=125.76 Aligned_cols=81 Identities=30% Similarity=0.492 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchhee
Q psy13849 7 RTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYF 86 (342)
Q Consensus 7 r~~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f 86 (342)
+...++++++.+++.|+..|+..| +|++.||+||
T Consensus 6 ~~~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~yf 39 (97)
T 3ouf_A 6 EFQVLFVLTILTLISGTIFYSTVE----------------------------------------------GLRPIDALYF 39 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHS----------------------------------------------CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHH
Confidence 344556667788899999999888 8999999999
Q ss_pred eeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 87 STVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 87 ~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
+.+|+|||||||++|.|+.||+++++++++|++++.+.++.+++.++
T Consensus 40 ~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 40 SVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999887664
No 7
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.61 E-value=1.6e-16 Score=129.34 Aligned_cols=79 Identities=29% Similarity=0.473 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeee
Q psy13849 9 LSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFST 88 (342)
Q Consensus 9 ~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~ 88 (342)
..++++++.+++.|+++|+..| +|++.||+||+.
T Consensus 25 ~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~y~~~ 58 (114)
T 2q67_A 25 QVLFVLTILTLISGTIFYSTVE----------------------------------------------GLRPIDALYFSV 58 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS----------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHH
Confidence 4455667788899999999888 799999999999
Q ss_pred eeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 89 VVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 89 ~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
+|+|||||||++|.|+.||+++++++++|++++...++.+++.+.
T Consensus 59 ~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 59 VTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp HHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999988887663
No 8
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=99.59 E-value=2.4e-16 Score=120.79 Aligned_cols=72 Identities=28% Similarity=0.499 Sum_probs=65.5
Q ss_pred HHHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHH
Q psy13849 233 FIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVAL 312 (342)
Q Consensus 233 ~~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~ 312 (342)
+.++..|+.+|+..|+|++.||+||+++|+|||||||.+|.++.+ |++
T Consensus 11 ~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~~--------------------------------r~~ 58 (82)
T 3ldc_A 11 LAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHTPLG--------------------------------MYF 58 (82)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH--------------------------------HHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcccCCCCCCCCCccH--------------------------------HHH
Confidence 345668999999999999999999999999999999999987766 899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy13849 313 SLVFILFGLAVVAASINLLVLRFM 336 (342)
Q Consensus 313 ~~~~~~~g~~~~~~~~~~~~~~~~ 336 (342)
+.+++++|+++.+++++.+.+.++
T Consensus 59 ~~~~~~~G~~~~~~~~~~i~~~l~ 82 (82)
T 3ldc_A 59 TCTLIVLGIGTFAVAVERLLEFLI 82 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999987753
No 9
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=99.57 E-value=7.5e-16 Score=121.82 Aligned_cols=75 Identities=27% Similarity=0.568 Sum_probs=66.9
Q ss_pred HHHHHHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcch
Q psy13849 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGY 309 (342)
Q Consensus 230 ~~~~~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 309 (342)
+++++++..|+.+|+..|+|++.||+||+++|+|||||||++|.++.+
T Consensus 12 ~~~~~~~~~g~~~~~~~e~~~~~~a~yf~~~T~tTvGyGdi~P~t~~g-------------------------------- 59 (97)
T 3ouf_A 12 VLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFG-------------------------------- 59 (97)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH--------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH--------------------------------
Confidence 344455678999999999999999999999999999999999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13849 310 VALSLVFILFGLAVVAASINLLVLRFM 336 (342)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ 336 (342)
++++++++++|+++.+++++.+++++.
T Consensus 60 r~~~~~~~~~G~~~~~~~i~~i~~~~~ 86 (97)
T 3ouf_A 60 KIFTILYIFIGIGLVFGFIHKLAVNVQ 86 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999987654
No 10
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.55 E-value=2.7e-15 Score=123.47 Aligned_cols=85 Identities=15% Similarity=0.219 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeeeE
Q psy13849 12 VVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVL 91 (342)
Q Consensus 12 ~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~~ 91 (342)
+..+++.+++||.+|+.+|++. +++..|++.||+||+.+|+
T Consensus 33 ~~~~~~~~~~~a~~~~~~E~~~---------------------------------------~~~~~~~~~~a~y~~~~T~ 73 (122)
T 2ih3_C 33 TVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWACETA 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS---------------------------------------TTCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhheeeecC---------------------------------------CCCccCccccchhheeeee
Confidence 3455667788999999999542 2334699999999999999
Q ss_pred EeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHH
Q psy13849 92 AMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKF 135 (342)
Q Consensus 92 tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~ 135 (342)
|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+.
T Consensus 74 tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~~ 117 (122)
T 2ih3_C 74 TTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGR 117 (122)
T ss_dssp TTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888766543
No 11
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=99.54 E-value=2.2e-15 Score=122.60 Aligned_cols=75 Identities=25% Similarity=0.524 Sum_probs=66.8
Q ss_pred HHHHHHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcch
Q psy13849 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGY 309 (342)
Q Consensus 230 ~~~~~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 309 (342)
.++++++..|+.+|+..|+|++.||+||+++|+|||||||++|.++.+
T Consensus 29 ~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~T~tTvGyGdi~P~t~~g-------------------------------- 76 (114)
T 2q67_A 29 VLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGAGNFSPQTDFG-------------------------------- 76 (114)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHTSCCCSSCCCCSHHH--------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhcceeCCCCccCCHhH--------------------------------
Confidence 344455678999999999999999999999999999999999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13849 310 VALSLVFILFGLAVVAASINLLVLRFM 336 (342)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ 336 (342)
++++++++++|+++++++++.+.+.+.
T Consensus 77 r~~~~~~~~~G~~~~~~~~~~l~~~~~ 103 (114)
T 2q67_A 77 KIFTILYIFIGIGLVFGFIHKLAVNVQ 103 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999887763
No 12
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.54 E-value=1.7e-15 Score=128.76 Aligned_cols=77 Identities=31% Similarity=0.483 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeee
Q psy13849 9 LSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFST 88 (342)
Q Consensus 9 ~~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~ 88 (342)
..++++++++++.|+++|...| +|++.||+||+.
T Consensus 28 ~~~~~~~~~~~~~g~~~~~~~e----------------------------------------------~~~~~~a~y~~~ 61 (148)
T 3vou_A 28 QVLFVLTFLTLTSGTIFYSTVE----------------------------------------------GLRPLDALYFSV 61 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS----------------------------------------------CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHH
Confidence 4456777888899999999888 799999999999
Q ss_pred eeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHH
Q psy13849 89 VVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGER 131 (342)
Q Consensus 89 ~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~ 131 (342)
+|+|||||||++|.|+.||+++++++++|++++.+.++.++..
T Consensus 62 ~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~ 104 (148)
T 3vou_A 62 VTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVN 104 (148)
T ss_dssp HHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999888763
No 13
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.53 E-value=2.1e-15 Score=129.23 Aligned_cols=86 Identities=19% Similarity=0.313 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeee
Q psy13849 10 SLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTV 89 (342)
Q Consensus 10 ~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~ 89 (342)
.+++.+++++++||.+|+.+|++. ++...+++.+|+||+++
T Consensus 54 ~~~~~~~~~i~~~a~~~~~~E~~~---------------------------------------~~~~~~s~~~a~y~s~v 94 (155)
T 2a9h_A 54 AATVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAALISYPDALWWSVE 94 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTS---------------------------------------SCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhccC---------------------------------------CCCccCcccceeheeee
Confidence 445556778899999999999542 12346799999999999
Q ss_pred eEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 90 VLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 90 ~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
|+|||||||++|.|+.||+++++++++|+.++++.++.+++.+.+
T Consensus 95 TltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 95 TATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred eeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998888766643
No 14
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=99.52 E-value=4.3e-15 Score=118.61 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=66.3
Q ss_pred HHHHHHhhhhhhhhcccCC-------CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhccccccc
Q psy13849 231 LSFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHAL 303 (342)
Q Consensus 231 ~~~~~~~~ga~~~~~~e~~-------~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~ 303 (342)
.+++++++++.+++..|+| +|.||+||+++|+|||||||++|.+..+
T Consensus 14 ~~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g-------------------------- 67 (103)
T 2k1e_A 14 ELQKVLEEASKKAVEAERGAPGAALISYPDAIWWSVETATTVGYGDRYPVTEEG-------------------------- 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSC--------------------------
T ss_pred HHHHHHHHHHHhhhhhccCCCCcccccHHHHHHHHHHHHhcccCCCCCCCChhH--------------------------
Confidence 3444566789999999987 9999999999999999999999988766
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13849 304 EQKPGYVALSLVFILFGLAVVAASINLLVLRFMTI 338 (342)
Q Consensus 304 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 338 (342)
++++++++++|+++++++++.+...+.+.
T Consensus 68 ------r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 96 (103)
T 2k1e_A 68 ------RKVAEQVMKAGIEVFALVTAALATDFVRR 96 (103)
T ss_dssp ------THHHHHHHHHHHHHHHHTHHHHHTTGGGH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988766544
No 15
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.49 E-value=2.5e-15 Score=126.19 Aligned_cols=57 Identities=19% Similarity=0.377 Sum_probs=54.2
Q ss_pred CCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
.|++.||+||+++|+|||||||++|.|+.||+++++++++|++++.+.++.+++.+.
T Consensus 41 ~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~ 97 (137)
T 4h33_A 41 INNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFR 97 (137)
T ss_dssp CCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred CCCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999998887664
No 16
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=99.48 E-value=8.2e-15 Score=123.10 Aligned_cols=78 Identities=21% Similarity=0.280 Sum_probs=66.6
Q ss_pred HHhhHHHHHHHhhhhhhhhcccC-------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcc
Q psy13849 226 FATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298 (342)
Q Consensus 226 l~~~~~~~~~~~~ga~~~~~~e~-------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~ 298 (342)
+...+++++++.+++.+++..|+ |+|.||+||+++|+|||||||++|.+..+
T Consensus 9 ~~~~~~~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~--------------------- 67 (139)
T 3eff_K 9 GAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG--------------------- 67 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSCTTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHH---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHheeeecccCCCCcCCCcCH---------------------
Confidence 33344455566789999999997 99999999999999999999999988776
Q ss_pred cccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13849 299 NDHALEQKPGYVALSLVFILFGLAVVAASINLLVLRF 335 (342)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 335 (342)
++++++++++|+++++++++.+...+
T Consensus 68 -----------r~~~~~~~~~G~~~~~~~~~~i~~~~ 93 (139)
T 3eff_K 68 -----------RLVAVVVMVAGITSFGLVTAALATWF 93 (139)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999876544
No 17
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=99.47 E-value=1.4e-14 Score=122.99 Aligned_cols=73 Identities=29% Similarity=0.543 Sum_probs=63.5
Q ss_pred hhHHHHHHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCc
Q psy13849 228 TGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKP 307 (342)
Q Consensus 228 ~~~~~~~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~ 307 (342)
..+++++++..|+.+|...|+|+|.||+||+++|+|||||||++|.+..+
T Consensus 30 ~~~~~~~~~~~g~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~------------------------------ 79 (148)
T 3vou_A 30 LFVLTFLTLTSGTIFYSTVEGLRPLDALYFSVVTLTTVGDGNFSPQTDFG------------------------------ 79 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHTTCCCSSCCCCSHHH------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHccCCCCCCCCCccH------------------------------
Confidence 33444555678999999999999999999999999999999999988766
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q psy13849 308 GYVALSLVFILFGLAVVAASINLLV 332 (342)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~~~~~~ 332 (342)
++++++++++|+++++++++.+.
T Consensus 80 --r~~~~~~~~~g~~~~~~~~~~~~ 102 (148)
T 3vou_A 80 --KVFTILYIFIGIGLVFGFIHKLA 102 (148)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999888764
No 18
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=99.44 E-value=2.4e-14 Score=120.10 Aligned_cols=69 Identities=28% Similarity=0.420 Sum_probs=58.9
Q ss_pred hhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHH
Q psy13849 237 TTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVF 316 (342)
Q Consensus 237 ~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~ 316 (342)
..++..+...|.|+|.||+||+++|+|||||||++|.+..+ +++++++
T Consensus 30 ~~~~~~~~e~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g--------------------------------r~~~~~~ 77 (137)
T 4h33_A 30 IPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIVPVTPIG--------------------------------RILASIM 77 (137)
T ss_dssp THHHHHHHCSSCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH--------------------------------HHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcccCCCCCCCCHhH--------------------------------HHHHHHH
Confidence 33455555556799999999999999999999999998877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q psy13849 317 ILFGLAVVAASINLLVLRFMT 337 (342)
Q Consensus 317 ~~~g~~~~~~~~~~~~~~~~~ 337 (342)
+++|+++++++++.++..+.+
T Consensus 78 ~~~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 78 MLFGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp HHHHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998765543
No 19
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=99.44 E-value=2.8e-14 Score=117.41 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=66.7
Q ss_pred HHHHHhhhhhhhhcccC-------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 232 SFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 232 ~~~~~~~ga~~~~~~e~-------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
+.+++.+++.+++..|+ |++.||+||+++|+|||||||++|.++.+
T Consensus 36 ~~~~~~~~a~~~~~~E~~~~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~g--------------------------- 88 (122)
T 2ih3_C 36 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETATTVAYGDLYPVTLWG--------------------------- 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTSTTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------------------------
T ss_pred HHHHHHHHHHhhheeeecCCCCccCccccchhheeeeeeeeecCCCCCCCccH---------------------------
Confidence 33445678888888887 99999999999999999999999998776
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVLRFMTII 339 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 339 (342)
++++++++++|++++++.++.+...+.+..
T Consensus 89 -----r~~~~~~~~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 89 -----RLVAVVVMVAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988776654
No 20
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=99.43 E-value=4.4e-14 Score=120.91 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=67.4
Q ss_pred HHHHHhhhhhhhhcccCC-------CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 232 SFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 232 ~~~~~~~ga~~~~~~e~~-------~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
+++++++++.+++..|+| ++.||+||+++|+|||||||++|.+..+
T Consensus 59 ~~~~i~~~a~~~~~~E~~~~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~g--------------------------- 111 (155)
T 2a9h_A 59 LVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETATTVGYGDLYPVTLWG--------------------------- 111 (155)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHhccCCCCccCcccceeheeeeeeecccCCCCCCCChhH---------------------------
Confidence 344556789999999988 8999999999999999999999998776
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVLRFMTII 339 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 339 (342)
++++++++++|+++++++++.+...+.+..
T Consensus 112 -----r~~~~~~~l~Gv~~~a~~~~~i~~~~~~~~ 141 (155)
T 2a9h_A 112 -----RCVAVVVMVAGITSYGLVFAAVATWFVGRE 141 (155)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999988876654
No 21
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.40 E-value=1.1e-15 Score=132.43 Aligned_cols=85 Identities=18% Similarity=0.252 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeeeE
Q psy13849 12 VVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVL 91 (342)
Q Consensus 12 ~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~~ 91 (342)
++++++++++||++|+.+|.+. +....|++.+|+||+++|+
T Consensus 39 ~~~~~~~~~~~a~~~~~~e~~~---------------------------------------~~~~~~~~~~a~yf~~~T~ 79 (166)
T 3pjs_K 39 TVLLVIVLLAGSYLAVLAERGA---------------------------------------PGAQLITYPRALWWSVETA 79 (166)
T ss_dssp SSSSTTTTTTTSSSSSSTTSSS---------------------------------------TTCCCCSTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCC---------------------------------------CCcccCCHHHHHHHHHHHh
Confidence 3445667778888888888542 2334699999999999999
Q ss_pred EeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHH
Q psy13849 92 AMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKF 135 (342)
Q Consensus 92 tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~ 135 (342)
|||||||++|.|+.||+++++++++|++++.+.++.+++.+.+.
T Consensus 80 tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~ 123 (166)
T 3pjs_K 80 TTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQ 123 (166)
T ss_dssp SCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSS
T ss_pred ccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888766543
No 22
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=99.31 E-value=6.8e-14 Score=121.09 Aligned_cols=70 Identities=19% Similarity=0.274 Sum_probs=61.5
Q ss_pred HHHHHhhhhhhhhcccC-------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 232 SFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 232 ~~~~~~~ga~~~~~~e~-------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
+++++++++.+++..|+ |+|.||+||+++|+|||||||++|.+..+
T Consensus 42 ~~~~~~~~a~~~~~~e~~~~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~--------------------------- 94 (166)
T 3pjs_K 42 LVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG--------------------------- 94 (166)
T ss_dssp STTTTTTTSSSSSSTTSSSTTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTT---------------------------
T ss_pred HHHHHHHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHhccccCCCCCCCCHhH---------------------------
Confidence 34456678999999998 99999999999999999999999998776
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVL 333 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 333 (342)
++++++++++|+++++++++.+..
T Consensus 95 -----r~~~~~~~l~G~~~~~~~~~~i~~ 118 (166)
T 3pjs_K 95 -----RLVAVVVMVAGITSFGLVTAALAT 118 (166)
T ss_dssp -----TTTTHHHHHHHHHHHHHHHTTSSS
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999987643
No 23
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=99.30 E-value=3e-13 Score=127.66 Aligned_cols=77 Identities=21% Similarity=0.411 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeeeE
Q psy13849 12 VVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVL 91 (342)
Q Consensus 12 ~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~~ 91 (342)
++..++|+++|+.+|+.+| +|++.||+||+++|+
T Consensus 203 ~~~~~~~l~~ga~~~~~~E----------------------------------------------~~~~~da~y~~~vTl 236 (309)
T 3um7_A 203 LIGCLLFVLTPTFVFCYME----------------------------------------------DWSKLEAIYFVIVTL 236 (309)
T ss_dssp HHHHHHHTHHHHHHHHHHH----------------------------------------------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----------------------------------------------CCCHHHHHHHHHhhe
Confidence 3446688899999999999 899999999999999
Q ss_pred EeecccCCCCCcccchh------hhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 92 AMIGYGHSTPMTIGGKA------FCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 92 tTiGyG~~~P~T~~gr~------~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
|||||||++|.|..||. ++++|+++|+.++.+.++.+++.+..
T Consensus 237 tTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 237 TTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp TTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred eccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999985 99999999999999999888876543
No 24
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.30 E-value=9.5e-13 Score=118.50 Aligned_cols=85 Identities=21% Similarity=0.309 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeee
Q psy13849 11 LVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVV 90 (342)
Q Consensus 11 l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~ 90 (342)
++..++.++.+||.+++..|++. +++..|++.+|+||+.+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~~e~~~---------------------------------------~~~~~~~~~~s~y~~~~t 176 (223)
T 1orq_C 136 LFGAVMLTVLYGAFAIYIVEYPD---------------------------------------PNSSIKSVFDALWWAVVT 176 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSSS---------------------------------------TTCSCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC---------------------------------------cCCCcCcchhHHHhHHhH
Confidence 45556667778999999999532 123368999999999999
Q ss_pred EEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 91 LAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 91 ~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
+||+||||++|.|+.||++++++++.|+.++.+.++.+++.+.+
T Consensus 177 ~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 177 ATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888876653
No 25
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=99.29 E-value=1e-12 Score=122.38 Aligned_cols=78 Identities=29% Similarity=0.458 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeee
Q psy13849 11 LVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVV 90 (342)
Q Consensus 11 l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~ 90 (342)
++.+.++++++|+.+|+.+| ++|++.||+||+++|
T Consensus 178 ~~~~~~~~~~~ga~~~~~~E---------------------------------------------~~~s~~da~y~~~iT 212 (280)
T 3ukm_A 178 GFVTVSCFFFIPAAVFSVLE---------------------------------------------DDWNFLESFYFCFIS 212 (280)
T ss_dssp HHHHHHHHTHHHHHHHHHHS---------------------------------------------SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHh---------------------------------------------cCCchhhhhhheeee
Confidence 35567788899999999998 169999999999999
Q ss_pred EEeecccCCCCCccc-------chhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 91 LAMIGYGHSTPMTIG-------GKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 91 ~tTiGyG~~~P~T~~-------gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
+|||||||++|.|+. ||+++++|+++|+.++++.++.+.+.+.
T Consensus 213 ltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~ 262 (280)
T 3ukm_A 213 LSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE 262 (280)
T ss_dssp HTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred eecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999996 5999999999999999999998887553
No 26
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.14 E-value=4.7e-13 Score=127.63 Aligned_cols=77 Identities=25% Similarity=0.390 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeeeeE
Q psy13849 12 VVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVL 91 (342)
Q Consensus 12 ~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~~~ 91 (342)
++++++++++|+++|+.+| +|+|.+|+||+++|+
T Consensus 24 ~~~~~~~~~~~~~~~~~~e----------------------------------------------~~~~~~a~y~~~~t~ 57 (336)
T 1lnq_A 24 LLLVLAVIIYGTAGFHFIE----------------------------------------------GESWTVSLYWTFVTI 57 (336)
T ss_dssp TTTTTTSHHHHTTTTTTSS----------------------------------------------SCCSSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh----------------------------------------------CCCHHHHHHHHHHHh
Confidence 3445667888999998888 899999999999999
Q ss_pred EeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 92 AMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 92 tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
|||||||+.|.|+.||+++++++++|++++.+.++.+.+.+.+
T Consensus 58 tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 100 (336)
T 1lnq_A 58 ATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN 100 (336)
T ss_dssp TTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred hcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998888776644
No 27
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=99.14 E-value=1.7e-11 Score=110.27 Aligned_cols=74 Identities=24% Similarity=0.353 Sum_probs=64.8
Q ss_pred HHHHHhhhhhhhhcccC-------CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 232 SFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 232 ~~~~~~~ga~~~~~~e~-------~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
+++++.+++.+++..|+ |+|.||+||+++|+|||||||.+|.+..+
T Consensus 140 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~--------------------------- 192 (223)
T 1orq_C 140 VMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVVPATPIG--------------------------- 192 (223)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHH---------------------------
T ss_pred HHHHHHHHHHHHHHHHhCCcCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhH---------------------------
Confidence 33445567888888997 99999999999999999999999988766
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVLRFMT 337 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (342)
++++.+++++|+++.++.++.+...+.+
T Consensus 193 -----~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 193 -----KVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998877654
No 28
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=99.06 E-value=2.7e-12 Score=122.27 Aligned_cols=67 Identities=30% Similarity=0.549 Sum_probs=54.0
Q ss_pred HHHhhhhhhhhcccCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHH
Q psy13849 234 IITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALS 313 (342)
Q Consensus 234 ~~~~~ga~~~~~~e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~ 313 (342)
+++++|+++|+..|+|+|.||+||+++|+|||||||++|.+..+ ++++
T Consensus 29 ~~~~~~~~~~~~~e~~~~~~a~y~~~~t~tTvGyGd~~p~t~~~--------------------------------r~~~ 76 (336)
T 1lnq_A 29 AVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLG--------------------------------MYFT 76 (336)
T ss_dssp TSHHHHTTTTTTSSSCCSSTTHHHHHHHHTTCCCSSCCCCCSSH--------------------------------HHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcccCCCCCCCCcCH--------------------------------HHHH
Confidence 34567999999999999999999999999999999999987766 5566
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy13849 314 LVFILFGLAVVAASINLLV 332 (342)
Q Consensus 314 ~~~~~~g~~~~~~~~~~~~ 332 (342)
++++++|+++++++++.+.
T Consensus 77 ~~~~~~g~~~~~~~~~~~~ 95 (336)
T 1lnq_A 77 VTLIVLGIGTFAVAVERLL 95 (336)
T ss_dssp THHHHTTSTTTTTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666543
No 29
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=99.05 E-value=9.7e-11 Score=119.15 Aligned_cols=89 Identities=21% Similarity=0.351 Sum_probs=70.6
Q ss_pred cchhHH-HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccc
Q psy13849 4 QNVRTL-SLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAG 82 (342)
Q Consensus 4 ~~~r~~-~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~ 82 (342)
++++.+ ..++++++.+++++.+|+.++...| +..|+|.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e----------------------------------------~~~~~~~~ 54 (565)
T 4gx0_A 15 QNLKVLLLYCAFLLVMLLAYASIFRYLMWHLE----------------------------------------GRAYSFMA 54 (565)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------CCCCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----------------------------------------CCCCchhh
Confidence 344444 4456667777889999988762111 12599999
Q ss_pred hheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhH-HHHHH
Q psy13849 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQS-IGERL 132 (342)
Q Consensus 83 a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~-~g~~l 132 (342)
|+||+++|+|||||||+.|.|+.||+++++++++|++++.+.++. +.+.+
T Consensus 55 ~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 105 (565)
T 4gx0_A 55 GIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMF 105 (565)
T ss_dssp HHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred hhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888776 44433
No 30
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=99.04 E-value=6.3e-11 Score=111.72 Aligned_cols=59 Identities=27% Similarity=0.364 Sum_probs=53.4
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
..|++.+|+||+++|+|||||||+.|.|+.||+++++.+++|+.+.++.++.+...+.+
T Consensus 79 ~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~ 137 (301)
T 1xl4_A 79 RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 137 (301)
T ss_dssp CTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999999999999999888776665543
No 31
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=99.00 E-value=1.1e-10 Score=111.92 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCccchheeeee
Q psy13849 10 SLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTV 89 (342)
Q Consensus 10 ~l~~~~i~yl~~Ga~iF~~lE~~~e~~~~~~~~~~~~~l~~~~n~~~~~~~~l~~~~~~~~~~~~~~~W~~~~a~~f~~~ 89 (342)
.++.++++.+.++|.+++.+|++.+.+ .-.++.+|+||+++
T Consensus 131 ~~~~~~~~~~~~~a~~~~~~e~~~~~~---------------------------------------~f~~~~~s~y~~~~ 171 (355)
T 3beh_A 131 GVTTLFGVVLFAVALAAYVIERDIQPE---------------------------------------KFGSIPQAMWWAVV 171 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHH---------------------------------------HHSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCc---------------------------------------ccccHHHHHHHHHh
Confidence 344555666778999999999643110 02378999999999
Q ss_pred eEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHH
Q psy13849 90 VLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKF 135 (342)
Q Consensus 90 ~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~ 135 (342)
|+||+||||+.|.|+.||+++++++++|+.++.+.++.+++.+.+.
T Consensus 172 t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 172 TLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp HHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred heeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998888766543
No 32
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.94 E-value=2.9e-10 Score=108.04 Aligned_cols=59 Identities=25% Similarity=0.349 Sum_probs=53.5
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
.+|++.+|+||+++|+|||||||+.|.|..||+++++.+++|+.++++.++.+...+.+
T Consensus 75 ~~~s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~ 133 (321)
T 2qks_A 75 FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ 133 (321)
T ss_dssp SSTTHHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcchhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999888777665543
No 33
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.94 E-value=1.7e-10 Score=110.12 Aligned_cols=59 Identities=29% Similarity=0.411 Sum_probs=53.6
Q ss_pred CCCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 76 PQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 76 ~~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
..+++.+|+||+++|+|||||||++|.|+.||+++++.+++|+.++++.++.+...+.+
T Consensus 93 ~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~ 151 (333)
T 1p7b_A 93 SPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 151 (333)
T ss_dssp SSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999988877666554
No 34
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=98.92 E-value=4.2e-10 Score=107.84 Aligned_cols=74 Identities=19% Similarity=0.215 Sum_probs=62.7
Q ss_pred HHHHHhhhhhhhhcccCC-------CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccc
Q psy13849 232 SFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALE 304 (342)
Q Consensus 232 ~~~~~~~ga~~~~~~e~~-------~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~ 304 (342)
.++++.++|.+++..|+| +|.||+||+++|+||+||||.+|.+..+
T Consensus 136 ~~~~~~~~a~~~~~~e~~~~~~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~--------------------------- 188 (355)
T 3beh_A 136 FGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAG--------------------------- 188 (355)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHH---------------------------
T ss_pred HHHHHHHHHHHHHHhhcCCCCcccccHHHHHHHHHhheeecCCCCCCCCChhH---------------------------
Confidence 344456788888888986 8999999999999999999999988766
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13849 305 QKPGYVALSLVFILFGLAVVAASINLLVLRFMT 337 (342)
Q Consensus 305 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (342)
++++.+++++|++++++.++.+...+.+
T Consensus 189 -----~~~~~~~~~~g~~~~~~~~~~i~~~~~~ 216 (355)
T 3beh_A 189 -----RVLAGAVMMSGIGIFGLWAGILATGFYQ 216 (355)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999888766543
No 35
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=98.91 E-value=4.1e-10 Score=114.50 Aligned_cols=63 Identities=21% Similarity=0.441 Sum_probs=51.6
Q ss_pred Hhhhhhhhhc----ccC--CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcch
Q psy13849 236 TTTGAAVFSK----YEG--WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGY 309 (342)
Q Consensus 236 ~~~ga~~~~~----~e~--~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 309 (342)
+++++.+|+. .|+ |+|+||+||+++|+|||||||++|.+..+
T Consensus 31 ~~~~~~~~~~~~~~~e~~~~~~~~~~y~~~~t~tTvGygd~~p~~~~~-------------------------------- 78 (565)
T 4gx0_A 31 LLAYASIFRYLMWHLEGRAYSFMAGIYWTITVMTTLGFGDITFESDAG-------------------------------- 78 (565)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHTTCCCCSSCCCSHHH--------------------------------
T ss_pred HHHHHHHHHHHHHhhcCCCCchhhhhheeeeeeeeecCCCcCCCCccH--------------------------------
Confidence 3445554444 676 99999999999999999999999988766
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy13849 310 VALSLVFILFGLAVVAASINL 330 (342)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~ 330 (342)
++++++++++|++++++.++.
T Consensus 79 ~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 79 YLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp HHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 778888888888888887776
No 36
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=98.88 E-value=7.8e-10 Score=104.26 Aligned_cols=57 Identities=26% Similarity=0.467 Sum_probs=52.2
Q ss_pred CCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHH
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASI 328 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 328 (342)
+++.||+||+++|+|||||||++|.+..+ ++++++.+++|+.++|..+
T Consensus 81 ~s~~~a~yfs~vT~tTvGYGDi~P~t~~g--------------------------------r~~~~~~~l~G~~~~a~~~ 128 (301)
T 1xl4_A 81 GSFTDAFFFSVQTMATIGYGKLIPIGPLA--------------------------------NTLVTLEALCGMLGLAVAA 128 (301)
T ss_dssp TCHHHHHHHHHHHHTTCCCSSSCCCHHHH--------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhheeccCCCCCcCCCHHH--------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999987766 8899999999999999999
Q ss_pred HHHHHHHhh
Q psy13849 329 NLLVLRFMT 337 (342)
Q Consensus 329 ~~~~~~~~~ 337 (342)
..+..++..
T Consensus 129 g~v~~~~~~ 137 (301)
T 1xl4_A 129 SLIYARFTR 137 (301)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 998877754
No 37
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=98.84 E-value=2e-09 Score=102.77 Aligned_cols=72 Identities=24% Similarity=0.333 Sum_probs=58.7
Q ss_pred HHhhhhhhhhcc-------cCCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCc
Q psy13849 235 ITTTGAAVFSKY-------EGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKP 307 (342)
Q Consensus 235 ~~~~ga~~~~~~-------e~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~ 307 (342)
++++++++|... +.++|.||+||+++|+|||||||++|.+..+
T Consensus 74 ~~l~fally~~e~~~~~~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~g------------------------------ 123 (333)
T 1p7b_A 74 NNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYA------------------------------ 123 (333)
T ss_dssp HHHHHHTTTSSSSSCCCCSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHH------------------------------
T ss_pred HHHHHHHHHHHhcccccCCCCCcHHHhHhhhheeeeecCCCCCcCCCHHH------------------------------
Confidence 344556665432 1368999999999999999999999987766
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13849 308 GYVALSLVFILFGLAVVAASINLLVLRFMTI 338 (342)
Q Consensus 308 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 338 (342)
++++++.+++|+.++++++..+..++...
T Consensus 124 --r~~~~~~~l~G~~~~a~~ig~i~~~~~~~ 152 (333)
T 1p7b_A 124 --HAIATLEIFVGMSGIALSTGLVFARFARP 152 (333)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999988877543
No 38
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=98.74 E-value=4.9e-09 Score=99.58 Aligned_cols=58 Identities=17% Similarity=0.329 Sum_probs=52.5
Q ss_pred CCCccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHH
Q psy13849 248 GWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAAS 327 (342)
Q Consensus 248 ~~~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 327 (342)
+|+|.||+||+++|+|||||||+.|.+..+ ++++++.+++|++++|+.
T Consensus 76 ~~s~~~a~y~s~vT~tTVGYGDi~P~t~~g--------------------------------r~~~~~~~l~G~~~~a~~ 123 (321)
T 2qks_A 76 PAGFGGAFFFSVETLATVGYGDMHPQTVYA--------------------------------HWIATLEIFVGMSSIALA 123 (321)
T ss_dssp STTHHHHHHHHHHHHTTCCCCSSCBCSHHH--------------------------------HHHHHHHHHHHHHHHHHH
T ss_pred CcchhheeeeeeEEeccccCCCcCcccHHH--------------------------------HHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999988776 889999999999999999
Q ss_pred HHHHHHHHhh
Q psy13849 328 INLLVLRFMT 337 (342)
Q Consensus 328 ~~~~~~~~~~ 337 (342)
+..+..++..
T Consensus 124 ~g~i~~~~~~ 133 (321)
T 2qks_A 124 TGCAFIKMSQ 133 (321)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHH
Confidence 9998877654
No 39
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.68 E-value=6.7e-09 Score=104.77 Aligned_cols=60 Identities=28% Similarity=0.434 Sum_probs=54.1
Q ss_pred CCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHhHHH
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFA 136 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~~~ 136 (342)
-.++.+|+||+++|+||+||||+.|.|..||+++++++++|+.++.+.++.+.+.++...
T Consensus 373 F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~~~ 432 (514)
T 2r9r_B 373 FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNYFY 432 (514)
T ss_dssp CSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred ccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999999999999998888877665443
No 40
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=98.48 E-value=3.9e-08 Score=99.15 Aligned_cols=68 Identities=25% Similarity=0.393 Sum_probs=54.8
Q ss_pred hhhhhhhhcccCC-------CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcch
Q psy13849 237 TTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGY 309 (342)
Q Consensus 237 ~~ga~~~~~~e~~-------~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~ 309 (342)
+.|++++ ..|++ ++.||+||+++|+|||||||+.|.+..+
T Consensus 356 if~~~~~-~~e~~~~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~g-------------------------------- 402 (514)
T 2r9r_B 356 LFSSAVY-FAEADERDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGG-------------------------------- 402 (514)
T ss_dssp HHHHHHH-HHHTTCTTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHH--------------------------------
T ss_pred HHHhhhh-eeeccCCCccccchhhhhheeeeEEEecccCCCCCCCcch--------------------------------
Confidence 3455444 44653 8999999999999999999999987765
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13849 310 VALSLVFILFGLAVVAASINLLVLRFMT 337 (342)
Q Consensus 310 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 337 (342)
++++++++++|++++++.++.+...|..
T Consensus 403 r~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 403 KIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788899999999999988888766543
No 41
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.34 E-value=2.8e-07 Score=87.87 Aligned_cols=57 Identities=21% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCccchheeeeeeEEeecccCCCCC--cccchhhhhHHHhhhhhhhhhhhhHHHHHHhH
Q psy13849 78 WKFAGAFYFSTVVLAMIGYGHSTPM--TIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134 (342)
Q Consensus 78 W~~~~a~~f~~~~~tTiGyG~~~P~--T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~~ 134 (342)
=++.+|+||+++|+|||||||+.|. |+.||+++.+-+++|+.+.++..+.+...+++
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr 148 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ 148 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3789999999999999999999996 78999999999999999988887666544443
No 42
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=98.21 E-value=6.3e-07 Score=85.56 Aligned_cols=54 Identities=24% Similarity=0.336 Sum_probs=47.1
Q ss_pred CccchheeeeeeEEeecccCCCC--CcccchhhhhHHHhhhhhhhhhhhhHHHHHH
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTP--MTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P--~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l 132 (342)
++.+|+||++.|+|||||||+.| .|+.|+++..+-+++|+.+.++..+.+..++
T Consensus 94 sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~ 149 (343)
T 3spc_A 94 GFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKM 149 (343)
T ss_dssp SHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999986 5999999999999999998888766554443
No 43
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=98.08 E-value=2.2e-06 Score=81.74 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=49.1
Q ss_pred CCccceeeEEeecceeeeccccccccc--ccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHH
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVALQN--DHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAA 326 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~~~--~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 326 (342)
-++.||+||+++|+|||||||..|.++ .+ +++..+-+++|+.+.|.
T Consensus 90 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g--------------------------------~~l~~~~~l~G~~l~a~ 137 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIGYGYRVITDKCPEG--------------------------------IILLLIQSVLGSIVNAF 137 (340)
T ss_dssp CSTTHHHHHHHHHHSCCCCSSSCBCTTCHHH--------------------------------HHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHhhhheeeeeecCCCccCcCcCHHH--------------------------------HHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999732 23 78899999999999999
Q ss_pred HHHHHHHHHhh
Q psy13849 327 SINLLVLRFMT 337 (342)
Q Consensus 327 ~~~~~~~~~~~ 337 (342)
...++..++..
T Consensus 138 ~~giv~ak~sr 148 (340)
T 3sya_A 138 MVGCMFVKISQ 148 (340)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhH
Confidence 99998877654
No 44
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=97.90 E-value=5.1e-06 Score=79.29 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=49.1
Q ss_pred CCccceeeEEeecceeeeccccccc--ccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHH
Q psy13849 249 WSYFDSFYYCFVTLTTIGFGDYVAL--QNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAA 326 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~GD~~p~--~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 326 (342)
-++.||+||+++|+|||||||..|. +..+ +++..+=.+.|+.+.|.
T Consensus 93 ~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~--------------------------------~~l~~~~~l~G~~l~a~ 140 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIGYGFRCVTEECPLA--------------------------------VFMVVVQSIVGCIIDSF 140 (343)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSSEECSSCHHH--------------------------------HHHHHHHHHHHHHHHHH
T ss_pred CCHHHHhheeeeeeEeecCCCccCCCCCHHH--------------------------------HHHHHHHHHHHHHHHHH
Confidence 3789999999999999999999985 3333 77889999999999999
Q ss_pred HHHHHHHHHhhh
Q psy13849 327 SINLLVLRFMTI 338 (342)
Q Consensus 327 ~~~~~~~~~~~~ 338 (342)
...++..++...
T Consensus 141 ~~giv~ak~srp 152 (343)
T 3spc_A 141 MIGAIMAKMARP 152 (343)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHHHHhhH
Confidence 999988777543
No 45
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.16 E-value=0.0001 Score=68.13 Aligned_cols=57 Identities=11% Similarity=0.074 Sum_probs=46.1
Q ss_pred CccchheeeeeeEEeeccc-CCC-CCcccc----hhhhhHHHhhhhhhhhhhhhHHHHHHhHH
Q psy13849 79 KFAGAFYFSTVVLAMIGYG-HST-PMTIGG----KAFCMAYAMVGIPLGLVMFQSIGERLNKF 135 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG-~~~-P~T~~g----r~~~~~y~~~Gi~~~~~~~~~~g~~l~~~ 135 (342)
|+++|+|+++.++||.||| |+. |.|..| +.|.++.++.|+.+..++++.+.+.+++.
T Consensus 180 s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~ 242 (285)
T 3rvy_A 180 TLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAIL 242 (285)
T ss_dssp SHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999 996 998866 77778888888888888877777665543
No 46
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=97.02 E-value=0.00027 Score=65.30 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=49.1
Q ss_pred CCccceeeEEeecceeeecc-ccc-ccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHH
Q psy13849 249 WSYFDSFYYCFVTLTTIGFG-DYV-ALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAA 326 (342)
Q Consensus 249 ~~~~~a~y~~~itltTvG~G-D~~-p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 326 (342)
-|+.||+||+++++||+||| |.. |.+..++ -..+.+.++.++.|+.++++
T Consensus 179 ~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~----------------------------~~~~~f~~~~~i~~~~~lnl 230 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLESWSMGIVRPLMEVYP----------------------------YAWVFFIPFIFVVTFVMINL 230 (285)
T ss_dssp SSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCT----------------------------TTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCC----------------------------hHHhhHHHHHHHHHHHHHHH
Confidence 36889999999999999999 997 8766431 11377888899999999999
Q ss_pred HHHHHHHHHhhhc
Q psy13849 327 SINLLVLRFMTII 339 (342)
Q Consensus 327 ~~~~~~~~~~~~~ 339 (342)
....+.+.|.+..
T Consensus 231 ~~aii~~~f~~~~ 243 (285)
T 3rvy_A 231 VVAICVDAMAILN 243 (285)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHH
Confidence 9999988776543
No 47
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=70.14 E-value=2.7 Score=36.65 Aligned_cols=62 Identities=15% Similarity=0.079 Sum_probs=44.8
Q ss_pred CccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHH
Q psy13849 250 SYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASIN 329 (342)
Q Consensus 250 ~~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 329 (342)
|+.+|+++.+.++|+.|++|......++ +|. ....+..+.++.+..++.+.+.
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~----~~~-----------------------~~~~f~~~~~i~~~i~lNlfia 217 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEI----YWW-----------------------SWVYFFSFIIICSITILNLVIA 217 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTT----CTT-----------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHh----CCc-----------------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999986543221 111 1244556666777888999999
Q ss_pred HHHHHHhhh
Q psy13849 330 LLVLRFMTI 338 (342)
Q Consensus 330 ~~~~~~~~~ 338 (342)
++.+.|-+.
T Consensus 218 vi~~~f~~~ 226 (229)
T 4dxw_A 218 ILVDVVIQK 226 (229)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHH
Confidence 888887654
No 48
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=66.65 E-value=1.7 Score=44.96 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=43.0
Q ss_pred CCCccchheeeeeeEEeecccCCCCCcccchhhhhHHHhhhhhhhhhhhhHHHHHHh
Q psy13849 77 QWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLN 133 (342)
Q Consensus 77 ~W~~~~a~~f~~~~~tTiGyG~~~P~T~~gr~~~~~y~~~Gi~~~~~~~~~~g~~l~ 133 (342)
.+++.+++|+++.+++..| ++..|++..+|++.+++.++++.+....-+++...+.
T Consensus 561 ~~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 616 (823)
T 3kg2_A 561 EFGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLT 616 (823)
T ss_dssp HHHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567899999999999888 7889999999999999999999888877777766554
No 49
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=62.69 E-value=4.9 Score=41.49 Aligned_cols=53 Identities=15% Similarity=0.255 Sum_probs=36.5
Q ss_pred ccceeeEEeecceeeecccccccccccccccCccchhhHhHHhhhhcccccccccCcchhHHHHHHHHHHHHHHHHHHHH
Q psy13849 251 YFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLANDHALEQKPGYVALSLVFILFGLAVVAASINL 330 (342)
Q Consensus 251 ~~~a~y~~~itltTvG~GD~~p~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 330 (342)
+.+++|+++.++...| ++..|.+..+ +++..+|.++++.+.+....-
T Consensus 564 ~~~~~~~~~~~l~~~g-~~~~p~~~~~--------------------------------R~~~~~w~~~~lil~~~Yta~ 610 (823)
T 3kg2_A 564 IFNSLWFSLGAFMQQG-ADISPRSLSG--------------------------------RIVGGVWWFFTLIIISSYTAN 610 (823)
T ss_dssp HHHHHHHTTTTSCC-------CCCHHH--------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CCcCCcchhh--------------------------------hhHHHHHHHHHHHHHHHHHHH
Confidence 5578888888888887 5666654443 889999999999998888777
Q ss_pred HHHHHh
Q psy13849 331 LVLRFM 336 (342)
Q Consensus 331 ~~~~~~ 336 (342)
+...+.
T Consensus 611 L~s~Lt 616 (823)
T 3kg2_A 611 LAAFLT 616 (823)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 765554
No 50
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=49.26 E-value=4.7 Score=35.11 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=29.2
Q ss_pred CccchheeeeeeEEeecccCCCC----CcccchhhhhHHHhhhh
Q psy13849 79 KFAGAFYFSTVVLAMIGYGHSTP----MTIGGKAFCMAYAMVGI 118 (342)
Q Consensus 79 ~~~~a~~f~~~~~tTiGyG~~~P----~T~~gr~~~~~y~~~Gi 118 (342)
++.+|++....++|+-|++|+.. .++.+.++.+.|.++|-
T Consensus 165 ~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~ 208 (229)
T 4dxw_A 165 DLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICS 208 (229)
T ss_dssp SHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 68999999999999999998732 33456666666665553
No 51
>3pjz_A Potassium uptake protein TRKH; structural genomics, PSI-2, protein structure initiative, NE consortium on membrane protein structure; 3.51A {Vibrio parahaemolyticus}
Probab=37.03 E-value=20 Score=35.37 Aligned_cols=38 Identities=11% Similarity=0.250 Sum_probs=26.9
Q ss_pred ccchheeeeeeEEeecccCC--CCCcccchhhhhHHHhhh
Q psy13849 80 FAGAFYFSTVVLAMIGYGHS--TPMTIGGKAFCMAYAMVG 117 (342)
Q Consensus 80 ~~~a~~f~~~~~tTiGyG~~--~P~T~~gr~~~~~y~~~G 117 (342)
+.+|+|-+.+..||-||... ..-++..+++.++.+++|
T Consensus 307 l~~a~Fq~vS~~TttGF~t~d~~~w~~~~~~ll~~LMfIG 346 (494)
T 3pjz_A 307 FDQALFQTVSISTTAGFTTTGFADWPLFLPVLLLFSSFIG 346 (494)
T ss_dssp HHHHHHHHHHTTTTCCCCSCCCSSCCTHHHHHHHHHTTSC
T ss_pred HHHHHHheeecccCCcccccChHhCCHHHHHHHHHHHHHc
Confidence 55777888888888898744 333456777777777766
No 52
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=25.49 E-value=1e+02 Score=17.76 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc
Q psy13849 8 TLSLVVCTFTYLLVGAAVFDALES 31 (342)
Q Consensus 8 ~~~l~~~~i~yl~~Ga~iF~~lE~ 31 (342)
.+.=++.++.++.+|-++|..+..
T Consensus 8 viaglvalltflafgfwlfkylqk 31 (32)
T 2lx0_A 8 VIAGLVALLTFLAFGFWLFKYLQK 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344567788899999999988753
Done!