RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13849
(342 letters)
>3um7_A Potassium channel subfamily K member 4; potassium ION channel,
metal transport; 3.31A {Homo sapiens}
Length = 309
Score = 156 bits (395), Expect = 2e-45
Identities = 68/263 (25%), Positives = 112/263 (42%), Gaps = 17/263 (6%)
Query: 2 RRQNVRTLSLVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKY-NISQIDYH 60
++ L+L+ YL+ GA VF ALE E++ L R++ LR + +S +
Sbjct: 26 AMRSTTLLALLALVLLYLVSGALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELG 85
Query: 61 MLEIVVIE-----------NKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAF 109
+L V + + + W AF+FS ++ IGYG+ T G+ F
Sbjct: 86 LLIKEVADALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLF 145
Query: 110 CMAYAMVGIPLGLVMFQSIGERLNKFASIVIRRAKGLLRCEHAEAT---EINLMFATGLL 166
C+ YA+VGIPL ++ +G+RL I + + H ++ M +
Sbjct: 146 CIFYALVGIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIG 205
Query: 167 SFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE--ATEINL 224
+ T VF E WS ++ Y+ VTLTT+GFGDYVA + A +
Sbjct: 206 CLLFVLTPTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWI 265
Query: 225 MFATGLLSFIITTTGAAVFSKYE 247
+ + ++TT G +
Sbjct: 266 LLGLAYFASVLTTIGNWLRVVSR 288
Score = 69.5 bits (169), Expect = 2e-13
Identities = 47/240 (19%), Positives = 77/240 (32%), Gaps = 55/240 (22%)
Query: 108 AFCMAYAMVGIPLGLVMFQSI-----GERLNKFASIVIRRAKGLLRCEHAEATEINLMFA 162
A + Y + G LV F+++ + + + + + E + A
Sbjct: 37 ALVLLYLVSG---ALV-FRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLIKEVA 92
Query: 163 TGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRC-------- 214
L T + S + W +F++ +TTIG+G+ R
Sbjct: 93 DALGGGADPETQSTSQSSHSAWDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALV 152
Query: 215 ------------------------------------EHAEATEINLMFATGLLSFIITTT 238
++ M + + T
Sbjct: 153 GIPLFGILLAGVGDRLGSSLRHGIGHIEAIFLKWHVPPELVRVLSAMLFLLIGCLLFVLT 212
Query: 239 GAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298
VF E WS ++ Y+ VTLTT+GFGDYVA + + P Y L +IL GLA
Sbjct: 213 PTFVFCYMEDWSKLEAIYFVIVTLTTVGFGDYVAGAD--PRQDSPAYQPLVWFWILLGLA 270
Score = 35.2 bits (80), Expect = 0.022
Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 10/91 (10%)
Query: 77 QWKFAGAFYFSTVVLAMIGYGHSTPMT------IGGKAFCMAYAMVGIPLGLVMFQSIGE 130
W A YF V L +G+G + + ++G+ + +IG
Sbjct: 222 DWSKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGN 281
Query: 131 RLNKFASIVIRRAKGLLRCEHAEATEINLMF 161
L V RR + + A++ + ++F
Sbjct: 282 WLRV----VSRRTRAEMGGLTAQSNSLEVLF 308
>3ukm_A Potassium channel subfamily K member 1; membrane protein,
eukaryotic, two-pore DO potassium channel, K2P channel,
membrane; HET: UND; 3.40A {Homo sapiens}
Length = 280
Score = 146 bits (370), Expect = 5e-42
Identities = 62/250 (24%), Positives = 110/250 (44%), Gaps = 14/250 (5%)
Query: 11 LVVCTFTYLLVGAAVFDALESNTERRRWELLQSFRDEMLRKY-NISQIDYHMLEIVVIEN 69
LV+ YL+ GA VF ++E E + L+ + L ++ +S+ V+E
Sbjct: 16 LVLGYLLYLVFGAVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEA 75
Query: 70 KPH--------KAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLG 121
+ W F A +F++ VL+ GYGH+ P++ GGKAFC+ Y+++GIP
Sbjct: 76 SNYGVSVLSQASGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFT 135
Query: 122 LVMFQSIGERLNKFAS-IVIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSK 180
L+ ++ +R+ + + ++ + + AAVFS
Sbjct: 136 LLFLTAVVQRITVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSV 195
Query: 181 YE-GWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE---ATEINLMFATGLLSFIIT 236
E W++ +SFY+CF++L+TIG GDYV +G + L+ + ++
Sbjct: 196 LEDDWNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLE 255
Query: 237 TTGAAVFSKY 246
T K
Sbjct: 256 TFCELHELKK 265
Score = 67.2 bits (163), Expect = 7e-13
Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 44/163 (26%)
Query: 179 SKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLR------------------------- 213
S W + + ++ L+T G+G V L +
Sbjct: 87 SGNWNWDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146
Query: 214 -----------------CEHAEATEINLMFATGLLSFIITTTGAAVFSKYE-GWSYFDSF 255
++ + + AAVFS E W++ +SF
Sbjct: 147 TVHVTRRPVLYFHIRWGFSKQVVAIVHAVLLGFVTVSCFFFIPAAVFSVLEDDWNFLESF 206
Query: 256 YYCFVTLTTIGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298
Y+CF++L+TIG GDYV + + + + Y ++L GL
Sbjct: 207 YFCFISLSTIGLGDYVPGEGYNQ-KFRELYKIGITCYLLLGLI 248
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel;
4-helical bundle, ION channel, membrane, transport
protein; 3.20A {Bacillus weihenstephanensis}
Length = 148
Score = 55.3 bits (133), Expect = 1e-09
Identities = 20/94 (21%), Positives = 38/94 (40%), Gaps = 9/94 (9%)
Query: 205 YVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTT 264
+ L+ +L+ + L F+ T+G +S EG D+ Y+ VTLTT
Sbjct: 8 ILTLKRMLKACLRAWKDKEFQVLFVLT-FLTLTSGTIFYSTVEGLRPLDALYFSVVTLTT 66
Query: 265 IGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298
+G G++ ++++I G+
Sbjct: 67 VGDGNFSPQT--------DFGKVFTILYIFIGIG 92
Score = 55.3 bits (133), Expect = 1e-09
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 139 VIRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLT 198
I K +L+ + L F+ T+G +S EG D+ Y+ VTLT
Sbjct: 7 FILTLKRMLKACLRAWKDKEFQVLFVLT-FLTLTSGTIFYSTVEGLRPLDALYFSVVTLT 65
Query: 199 TIGFGDYV 206
T+G G++
Sbjct: 66 TVGDGNFS 73
Score = 43.8 bits (103), Expect = 1e-05
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFAS 137
+ A YFS V L +G G+ +P T GK F + Y +GI L + + +
Sbjct: 51 LRPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSI 110
Query: 138 IVIRRAK 144
+ R+ +
Sbjct: 111 LSNRKKE 117
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel,
open conformation, IO transport; 1.45A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3lde_A 3r65_A 3ous_A 3ldd_A
Length = 82
Score = 51.6 bits (124), Expect = 5e-09
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALS 289
LL + G A F EG S+ S Y+ FVT+ T+G+GDY P + +
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPHT--------PLGMYFT 59
Query: 290 LVFILFGLA 298
I+ G+
Sbjct: 60 CTLIVLGIG 68
Score = 50.8 bits (122), Expect = 9e-09
Identities = 18/44 (40%), Positives = 24/44 (54%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVAL 208
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 8 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPH 51
Score = 40.0 bits (94), Expect = 6e-05
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
+ + Y++ V +A +GYG +P T G F ++GI V + + E L
Sbjct: 27 ESWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer,
central cavity, ION metal transport, membrane protein;
2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A
2ahz_A
Length = 114
Score = 52.6 bits (126), Expect = 5e-09
Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 140 IRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTT 199
+ K +LR + L + + G +S EG D+ Y+ VTLTT
Sbjct: 5 LLTLKRMLRACLRAWKDKEFQVLFVLTILTLIS-GTIFYSTVEGLRPIDALYFSVVTLTT 63
Query: 200 IGFGDYV 206
+G G++
Sbjct: 64 VGAGNFS 70
Score = 52.6 bits (126), Expect = 5e-09
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 9/94 (9%)
Query: 205 YVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTT 264
+ L+ +LR + L + + G +S EG D+ Y+ VTLTT
Sbjct: 5 LLTLKRMLRACLRAWKDKEFQVLFVLTILTLIS-GTIFYSTVEGLRPIDALYFSVVTLTT 63
Query: 265 IGFGDYVALQNDHALEQKPGYVALSLVFILFGLA 298
+G G++ Q ++++I G+
Sbjct: 64 VGAGNFSP--------QTDFGKIFTILYIFIGIG 89
Score = 42.9 bits (101), Expect = 1e-05
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
+ A YFS V L +G G+ +P T GK F + Y +GI L + +
Sbjct: 48 LRPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNV 102
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein;
1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A
3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A
3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Length = 97
Score = 51.4 bits (123), Expect = 8e-09
Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALS 289
+L+ + +G +S EG D+ Y+ VTLTT+G+GD+ Q +
Sbjct: 12 VLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFS--------PQTDFGKIFT 63
Query: 290 LVFILFGLA 298
+++I G+
Sbjct: 64 ILYIFIGIG 72
Score = 51.4 bits (123), Expect = 9e-09
Identities = 20/82 (24%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINL 224
+L+ + +G +S EG D+ Y+ VTLTT+G+GD+ + T + +
Sbjct: 12 VLTILTLISGTIFYSTVEGLRPIDALYFSVVTLTTVGYGDFSPQTDFGKI----FTILYI 67
Query: 225 MFATGLLSFIITTTGAAVFSKY 246
GL+ I V
Sbjct: 68 FIGIGLVFGFIHKLAVNVQLPS 89
Score = 44.4 bits (105), Expect = 3e-06
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGE--RLNKF 135
+ A YFS V L +GYG +P T GK F + Y +GI L + +L
Sbjct: 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSI 90
Query: 136 ASIVIRR 142
S ++ R
Sbjct: 91 LSNLVPR 97
>1lnq_A MTHK channels, potassium channel related protein; rossman fold,
helix bundle, membrane protein; 3.30A
{Methanothermobacter thermautotrophicusorganism_taxid}
SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Length = 336
Score = 52.5 bits (126), Expect = 7e-08
Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 159 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE 218
LL + G A F EG S+ S Y+ FVT+ T+G+GDY L
Sbjct: 19 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMY---- 74
Query: 219 ATEINLMFATGLLSFIITTTGAAVFSKY 246
T ++ G + + + ++
Sbjct: 75 FTVTLIVLGIGTFAVAVERLLEFLINRE 102
Score = 49.8 bits (119), Expect = 6e-07
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 224 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVAL 273
LL + G A F EG S+ S Y+ FVT+ T+G+GDY
Sbjct: 19 PATRILLLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPS 68
Score = 40.5 bits (95), Expect = 5e-04
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
+ + Y++ V +A +GYG +P T G F + ++GI V + + E L
Sbjct: 44 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 98
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.1 bits (127), Expect = 9e-08
Identities = 61/375 (16%), Positives = 107/375 (28%), Gaps = 114/375 (30%)
Query: 40 LLQSFRDEMLRKYNISQIDYHMLEIVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGY--- 96
L F + L +I H L + + + K Y + ++A +
Sbjct: 87 CLTEFENCYLEGNDI-----HAL-AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKK 140
Query: 97 -----------GHSTPMTI-GGKAFCMAYAMVGIPLGLVMF---QSIGERLNKFASIVIR 141
G++ + I GG+ Y F + + + + +I+
Sbjct: 141 SNSALFRAVGEGNAQLVAIFGGQGNTDDY-----------FEELRDLYQTYHVLVGDLIK 189
Query: 142 RAKGLLRCEHAEATEINLMFATGL--LSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTT 199
+ L + +F GL L ++ + Y S ++
Sbjct: 190 FSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP------DKDYLLS---IPISCPL 240
Query: 200 IG---FGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDSFY 256
IG YV LL E L ATG ++T A ++ + W +SF+
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSY-LKGATGHSQGLVT---AVAIAETDSW---ESFF 293
Query: 257 YCFVT----LTTIG------FGDYV--------ALQNDHALEQKPGY------VALSLVF 292
L IG + + +L+N+ E P + V
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLSISNLTQEQVQ 350
Query: 293 ILFGLANDHALEQKPGYVALSLV-----FI-------LFGLAV----VAASINL------ 330
N H K V +SLV + L+GL + A L
Sbjct: 351 DYVNKTNSHLPAGKQ--VEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIP 408
Query: 331 -------LVLRFMTI 338
RF+ +
Sbjct: 409 FSERKLKFSNRFLPV 423
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor,
voltage dependent, ION CH shaker, membrane protein,
eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB:
3lnm_B* 3lut_B* 2a79_B*
Length = 514
Score = 42.0 bits (98), Expect = 2e-04
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 207 ALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDS----FYYCFVTL 262
LQ L + A E+ L+ + I+ ++ E S F S F++ V++
Sbjct: 328 GLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVSM 387
Query: 263 TTIGFGDYV 271
TT+G+GD V
Sbjct: 388 TTVGYGDMV 396
Score = 38.5 bits (89), Expect = 0.003
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 141 RRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYFDS----FYYCFVT 196
+ + L + A E+ L+ + I+ ++ E S F S F++ V+
Sbjct: 327 KGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQFPSIPDAFWWAVVS 386
Query: 197 LTTIGFGDYV 206
+TT+G+GD V
Sbjct: 387 MTTVGYGDMV 396
Score = 33.5 bits (76), Expect = 0.088
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCMA--YAMVGIPLGLVMFQSIGERLNKFAS 137
AF+++ V + +GYG P TIGGK + C + +P+ +++ + F
Sbjct: 379 AFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIV--------SNFNY 430
Query: 138 IVIRRAKGLLRCEHAEATE 156
R +G + ++ + T
Sbjct: 431 FYHRETEGEEQAQYLQVTS 449
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane
helices, ION conduction, immunoglobulin fold, assembly;
3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16
f.14.1.1 PDB: 2wll_B* 2wll_A*
Length = 333
Score = 40.9 bits (95), Expect = 3e-04
Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
Query: 80 FAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNKFASIV 139
F GAF+FS LA +GYG P T+ A VG+ + G +FA
Sbjct: 97 FVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALS---TGLVFARFARPR 153
Query: 140 IRRAKGLLRCEHAEATEINLMF 161
+ + LM
Sbjct: 154 AKIMFARHAIVRPFNGRMTLMV 175
Score = 33.6 bits (76), Expect = 0.083
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 5/88 (5%)
Query: 159 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE 218
L L ++ G A + + +F++ TL T+G+GD + +A
Sbjct: 70 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHP-----QTVYAH 124
Query: 219 ATEINLMFATGLLSFIITTTGAAVFSKY 246
A +F + T A F++
Sbjct: 125 AIATLEIFVGMSGIALSTGLVFARFARP 152
Score = 32.1 bits (72), Expect = 0.26
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 224 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGD 269
L L ++ G A + + +F++ TL T+G+GD
Sbjct: 70 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGD 115
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+
IONS, cell membrane, transport PROT; 3.80A {Streptomyces
lividans} PDB: 1f6g_A
Length = 166
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 146 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 198
LL H A + A +L I+ G+ + E +Y + ++ T T
Sbjct: 21 LLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETAT 80
Query: 199 TIGFGDYV 206
T+G+GD
Sbjct: 81 TVGYGDLY 88
Score = 37.6 bits (87), Expect = 0.002
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 211 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 263
LL H A + A +L I+ G+ + E +Y + ++ T T
Sbjct: 21 LLLGRHGSALQWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETAT 80
Query: 264 TIGFGDYV 271
T+G+GD
Sbjct: 81 TVGYGDLY 88
Score = 32.6 bits (74), Expect = 0.11
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 13/79 (16%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCM--AYAMVGIPLGLVMFQSIGERLNKFAS 137
A ++S +GYG P+T+ G+ M G+ + F
Sbjct: 71 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA--------TWFVG 122
Query: 138 IVIRRAKGLLRCEHAEATE 156
++ + +R A E
Sbjct: 123 QEQQQQQQFVRHSEKAAEE 141
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION
channel, inwardly rectifying channel, metal transport;
2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16
f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A*
2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A*
2x6a_A*
Length = 301
Score = 38.5 bits (89), Expect = 0.002
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 3/98 (3%)
Query: 64 IVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLV 123
+ + F AF+FS +A IGYG P+ A+ G+ V
Sbjct: 67 AYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAV 126
Query: 124 MFQSIGERLNKFASIVIRRAKGLLRCEHAEATEINLMF 161
I R + + V+ ++ ++ + T LM
Sbjct: 127 AASLIYARFTRPTAGVLFSSRMVISDFEGKPT---LMM 161
Score = 35.0 bits (80), Expect = 0.024
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 184 WSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVF 243
S+ D+F++ T+ TIG+G + A L + + A F
Sbjct: 81 GSFTDAFFFSVQTMATIGYGKLIP-----IGPLANTLVTLEALCGMLGLAVAASLIYARF 135
Query: 244 SKYEGWSYF 252
++ F
Sbjct: 136 TRPTAGVLF 144
Score = 32.7 bits (74), Expect = 0.14
Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 15/95 (15%)
Query: 177 VFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIIT 236
E + D Y+ +T++ F + L+ N +FA L
Sbjct: 24 TRLGLEKRGWLDDHYHDLLTVSWPVFITLITGLYLV---------TNALFA--LAYLAC- 71
Query: 237 TTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYV 271
V S+ D+F++ T+ TIG+G +
Sbjct: 72 ---GDVIENARPGSFTDAFFFSVQTMATIGYGKLI 103
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA;
3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Length = 355
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 207 ALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYF----DSFYYCFVTL 262
L R EA + + + A V + F + ++ VTL
Sbjct: 114 FFPVLGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTL 173
Query: 263 TTIGFGDYV 271
+T G+GD +
Sbjct: 174 STTGYGDTI 182
Score = 35.6 bits (82), Expect = 0.017
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 4/65 (6%)
Query: 146 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEGWSYF----DSFYYCFVTLTTIG 201
L R EA + + + A V + F + ++ VTL+T G
Sbjct: 118 LGRVLANEARNLIGVTTLFGVVLFAVALAAYVIERDIQPEKFGSIPQAMWWAVVTLSTTG 177
Query: 202 FGDYV 206
+GD +
Sbjct: 178 YGDTI 182
Score = 34.8 bits (80), Expect = 0.037
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 8/84 (9%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCMA--YAMVGIPLGLV---MFQSIGERLNK 134
A +++ V L+ GYG + P + G+ M + G+ G++ +Q +
Sbjct: 165 AMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVRRGDFV 224
Query: 135 FASIVIRRAKGLLRCEHAEATEIN 158
++ + A EI
Sbjct: 225 RNWQLVAAVPLFQKLGPAVLVEIV 248
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward
rectifier, potassium channel selectivity filter, metal
transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Length = 321
Score = 38.2 bits (88), Expect = 0.003
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 3/73 (4%)
Query: 64 IVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLV 123
+ ++ + P F GAF+FS LA +GYG P T+ VG+ +
Sbjct: 63 LYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIAL 122
Query: 124 MFQSIGERLNKFA 136
G K +
Sbjct: 123 A---TGCAFIKMS 132
Score = 30.8 bits (69), Expect = 0.67
Identities = 14/87 (16%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 159 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAE 218
L + G+A + + +F++ TL T+G+GD + +A
Sbjct: 52 LFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGDMHP-----QTVYAH 106
Query: 219 ATEINLMFATGLLSFIITTTGAAVFSK 245
+F + T S+
Sbjct: 107 WIATLEIFVGMSSIALATGCAFIKMSQ 133
Score = 29.7 bits (66), Expect = 1.3
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 224 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGD 269
L + G+A + + +F++ TL T+G+GD
Sbjct: 52 LFLLLNTAFATLYMLGSAPIANQFPAGFGGAFFFSVETLATVGYGD 97
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix,
cell membrane, ION transport, ionic channel, membrane,
transmembrane; 3.80A {Streptomyces lividans}
Length = 139
Score = 36.0 bits (83), Expect = 0.004
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 185 SYFDSFYYCFVTLTTIGFGDYV 206
+Y + ++ T TT+G+GD
Sbjct: 40 TYPRALWWSVETATTVGYGDLY 61
Score = 36.0 bits (83), Expect = 0.004
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 250 SYFDSFYYCFVTLTTIGFGDYV 271
+Y + ++ T TT+G+GD
Sbjct: 40 TYPRALWWSVETATTVGYGDLY 61
Score = 33.3 bits (76), Expect = 0.039
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 13/79 (16%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCM--AYAMVGIPLGLVMFQSIGERLNKFAS 137
A ++S +GYG P+T+ G+ M G+ + F
Sbjct: 44 ALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALA--------TWFVG 95
Query: 138 IVIRRAKGLLRCEHAEATE 156
R +R A E
Sbjct: 96 REQERRGHFVRHSEKAAEE 114
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA,
structure, membrane protein, metal transport; HET: PCA;
NMR {Streptomyces lividans} SCOP: f.14.1.1
Length = 155
Score = 36.3 bits (84), Expect = 0.004
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 146 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 198
LL H A A +L I+ G+ + E SY D+ ++ T T
Sbjct: 38 LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETAT 97
Query: 199 TIGFGDYV 206
T+G+GD
Sbjct: 98 TVGYGDLY 105
Score = 36.3 bits (84), Expect = 0.004
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 211 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 263
LL H A A +L I+ G+ + E SY D+ ++ T T
Sbjct: 38 LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAALISYPDALWWSVETAT 97
Query: 264 TIGFGDYV 271
T+G+GD
Sbjct: 98 TVGYGDLY 105
Score = 32.1 bits (73), Expect = 0.11
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGI 118
A ++S +GYG P+T+ G+ + + GI
Sbjct: 88 ALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGI 123
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM
protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB:
2a0l_A
Length = 223
Score = 36.8 bits (86), Expect = 0.005
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 140 IRRAKGLLRCEHAEATEINLMFATGLLSFIITTTGAAVF--------SKYEGWSYFDSFY 191
I R L A +I G + + A++ S + S FD+ +
Sbjct: 114 ISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIK--SVFDALW 171
Query: 192 YCFVTLTTIGFGDYV 206
+ VT TT+G+GD V
Sbjct: 172 WAVVTATTVGYGDVV 186
Score = 36.8 bits (86), Expect = 0.005
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 7/56 (12%)
Query: 223 NLMFATGLLSFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYV 271
+ + GA E S FD+ ++ VT TT+G+GD V
Sbjct: 131 IRFYHLFGAVMLTVLYGAFAIYIVEYPDPNSSIKSVFDALWWAVVTATTVGYGDVV 186
Score = 31.4 bits (72), Expect = 0.28
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCM--AYAMVGIPLGLV 123
A +++ V +GYG P T GK M + + + +G V
Sbjct: 169 ALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTV 214
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer,
ION transport, ionic channel, membrane, transmembrane,
transport; NMR {Escherichia coli} PDB: 2kb1_A
Length = 103
Score = 34.7 bits (80), Expect = 0.006
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 185 SYFDSFYYCFVTLTTIGFGDYV 206
SY D+ ++ T TT+G+GD
Sbjct: 40 SYPDAIWWSVETATTVGYGDRY 61
Score = 34.7 bits (80), Expect = 0.006
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 250 SYFDSFYYCFVTLTTIGFGDYV 271
SY D+ ++ T TT+G+GD
Sbjct: 40 SYPDAIWWSVETATTVGYGDRY 61
Score = 33.6 bits (77), Expect = 0.020
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCM--AYAMVGIPLGLV 123
A ++S +GYG P+T G+ M + + +
Sbjct: 44 AIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAAL 89
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid
semi-synthetic, membrane protein; HET: 1EM; 1.72A
{Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C*
1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C*
2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C*
3ifx_A* 1j95_A 2jk5_C* ...
Length = 122
Score = 35.1 bits (81), Expect = 0.007
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 146 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 198
LL H A A +L I+ G+ + E +Y + ++ T T
Sbjct: 15 LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETAT 74
Query: 199 TIGFGDYV 206
T+ +GD
Sbjct: 75 TVAYGDLY 82
Score = 35.1 bits (81), Expect = 0.007
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 7/68 (10%)
Query: 211 LLRCEHAEATEINLMFATGLLSFIITTTGAAVFSKYEG-------WSYFDSFYYCFVTLT 263
LL H A A +L I+ G+ + E +Y + ++ T T
Sbjct: 15 LLLGRHGSALHWRAAGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWACETAT 74
Query: 264 TIGFGDYV 271
T+ +GD
Sbjct: 75 TVAYGDLY 82
Score = 31.6 bits (72), Expect = 0.13
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 83 AFYFSTVVLAMIGYGHSTPMTIGGK---AFCMA--YAMVGIPLGLV 123
A +++ + YG P+T+ G+ M G+ +
Sbjct: 65 ALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAAL 110
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid,
receptor, metal transport; HET: P8P; 2.45A {Gallus
gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Length = 343
Score = 32.4 bits (73), Expect = 0.16
Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 80 FAGAFYFSTVVLAMIGYGHS--TPMTIGGKAFCMAYAMVGIPLGLVMF 125
F AF FS IGYG T + ++VG + M
Sbjct: 95 FVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMI 142
Score = 29.3 bits (65), Expect = 1.7
Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 17/95 (17%)
Query: 183 GWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAAV 242
Y + V + +L L+ L+F +
Sbjct: 28 PQRYIADMFTTCVDIRWRYMLLLFSLAFLV---------SWLLFGLIFWLIALIHGDLEN 78
Query: 243 FSKYEGW--------SYFDSFYYCFVTLTTIGFGD 269
+ + + +F + T TTIG+G
Sbjct: 79 PGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGF 113
>3sya_A G protein-activated inward rectifier potassium CH; ION channel,
potassium channel, inward rectification, sodium PIP2
binding, G protein binding; HET: PIO; 2.98A {Mus
musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Length = 340
Score = 31.6 bits (71), Expect = 0.36
Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 18/96 (18%)
Query: 182 EGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAA 241
E + Y + V L + + L F + I G
Sbjct: 25 ETYRYLTDIFTTLVDLKWRFNLLIFVMVYTV---------TWLFFGM-IWWLIAYIRGDM 74
Query: 242 VFSKYEGW--------SYFDSFYYCFVTLTTIGFGD 269
+ W + +F + T TTIG+G
Sbjct: 75 DHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGY 110
Score = 30.5 bits (68), Expect = 0.71
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 80 FAGAFYFSTVVLAMIGYGHSTP--MTIGGKAFCMAYAMVGIPLGLVMF 125
F AF FS IGYG+ G + +++G + M
Sbjct: 92 FVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMV 139
Score = 30.1 bits (67), Expect = 1.1
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 157 INLMFATGLLSFIITTTGAAVFSKYEGW--------SYFDSFYYCFVTLTTIGFGD 204
L F + I G + W + +F + T TTIG+G
Sbjct: 56 TWLFFGM-IWWLIAYIRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGY 110
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.8 bits (66), Expect = 1.8
Identities = 18/152 (11%), Positives = 42/152 (27%), Gaps = 40/152 (26%)
Query: 29 LESNTERRRWELLQSFRDEMLRKYNISQIDYHM----------------LEIVVIENKPH 72
++ + ++ L +Y S I +H+ L+ +E K
Sbjct: 450 VDHYNIPKTFDS-DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 73 KAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
W +G + + Y Y P ++ + +
Sbjct: 509 HDSTAWNASG--SILNTLQQLKFYK--------------PYICDNDPK----YERLVNAI 548
Query: 133 NKFASIVIRRAKGLLRCEHAEATEINLMFATG 164
F + + + L+ ++ + I LM
Sbjct: 549 LDF---LPKIEENLICSKYTDLLRIALMAEDE 577
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding
protein, binding protein; NMR {Enterobacteria phage P2}
PDB: 2xcj_A
Length = 99
Score = 27.6 bits (61), Expect = 2.1
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 124 MFQSIGERLNKFASIVIRRAKGLLRCEHAEATEIN 158
M +I E++ +R+++ L R + A+ T +
Sbjct: 1 MSNTISEKIVL-----MRKSEYLSRQQLADLTGVP 30
>3hdf_A Lysozyme; antimicrobial, bacteriolytic enzyme, glycosid hydrolase,
late protein; 1.70A {Enterobacteria phage P21}
Length = 140
Score = 26.5 bits (58), Expect = 8.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 174 GAAVFSKYEGWSYFDSFYYCFVTLTTIGFG 203
G + EG SY Y V + T+ G
Sbjct: 2 GPSGNDGLEGVSY--IPYKDIVGVWTVCHG 29
Score = 26.5 bits (58), Expect = 8.0
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 239 GAAVFSKYEGWSYFDSFYYCFVTLTTIGFG 268
G + EG SY Y V + T+ G
Sbjct: 2 GPSGNDGLEGVSY--IPYKDIVGVWTVCHG 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.427
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,299,962
Number of extensions: 322464
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 740
Number of HSP's successfully gapped: 71
Length of query: 342
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 248
Effective length of database: 4,077,219
Effective search space: 1011150312
Effective search space used: 1011150312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 58 (26.4 bits)