RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13849
(342 letters)
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK
{Archaeon Methanothermobacter thermautotrophicus [TaxId:
145262]}
Length = 80
Score = 48.2 bits (115), Expect = 3e-08
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 230 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKPGYVALS 289
LL + G A F EG S+ S Y+ FVT+ T+G+GDY P + +
Sbjct: 7 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSP--------STPLGMYFT 58
Query: 290 LVFILFGLA 298
+ I+ G+
Sbjct: 59 VTLIVLGIG 67
Score = 47.4 bits (113), Expect = 5e-08
Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 165 LLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQGLLRCEHAEATEINL 224
LL + G A F EG S+ S Y+ FVT+ T+G+GDY L T +
Sbjct: 7 LLVLAVIIYGTAGFHFIEGESWTVSLYWTFVTIATVGYGDYSPSTPLGMY----FTVTLI 62
Query: 225 MFATGLLSFIITTTGAAV 242
+ G + + +
Sbjct: 63 VLGIGTFAVAVERLLEFL 80
Score = 42.8 bits (101), Expect = 2e-06
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERL 132
+ + Y++ V +A +GYG +P T G F + ++GI V + + E L
Sbjct: 26 ESWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel
kirbac3.1 {Magnetospirillum magnetotacticum [TaxId:
188]}
Length = 116
Score = 34.6 bits (79), Expect = 0.003
Identities = 16/57 (28%), Positives = 22/57 (38%)
Query: 78 WKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLVMFQSIGERLNK 134
F AF+FS +A IGYG P+ A+ G+ V I R +
Sbjct: 59 GSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115
Score = 31.9 bits (72), Expect = 0.030
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 224 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKP 283
L T L + V S+ D+F++ T+ TIG+G + P
Sbjct: 34 LYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLI--------PIGP 85
Query: 284 GYVALSLVFILFGLA 298
L + L G+
Sbjct: 86 LANTLVTLEALCGML 100
Score = 31.5 bits (71), Expect = 0.042
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 159 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYV 206
L T L + V S+ D+F++ T+ TIG+G +
Sbjct: 34 LYLVTNALFALAYLACGDVIENARPGSFTDAFFFSVQTMATIGYGKLI 81
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel
Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}
Length = 116
Score = 34.6 bits (79), Expect = 0.004
Identities = 15/75 (20%), Positives = 29/75 (38%), Gaps = 8/75 (10%)
Query: 224 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDYVALQNDHALEQKP 283
L L ++ G A + + +F++ TL T+G+GD Q
Sbjct: 35 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMH--------PQTV 86
Query: 284 GYVALSLVFILFGLA 298
A++ + I G++
Sbjct: 87 YAHAIATLEIFVGMS 101
Score = 33.8 bits (77), Expect = 0.007
Identities = 11/47 (23%), Positives = 20/47 (42%)
Query: 159 LMFATGLLSFIITTTGAAVFSKYEGWSYFDSFYYCFVTLTTIGFGDY 205
L L ++ G A + + +F++ TL T+G+GD
Sbjct: 35 LFVVNNTLFALLYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDM 81
Score = 31.9 bits (72), Expect = 0.037
Identities = 18/71 (25%), Positives = 28/71 (39%)
Query: 64 IVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLV 123
+ + + P F GAF+FS LA +GYG P T+ A VG+ +
Sbjct: 46 LYQLGDAPIANQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIAL 105
Query: 124 MFQSIGERLNK 134
+ R +
Sbjct: 106 STGLVFARFAR 116
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 103
Score = 31.1 bits (70), Expect = 0.052
Identities = 11/69 (15%), Positives = 27/69 (39%)
Query: 64 IVVIENKPHKAGPQWKFAGAFYFSTVVLAMIGYGHSTPMTIGGKAFCMAYAMVGIPLGLV 123
+ V+ + + A ++S +GYG P+T+ G+ + + GI +
Sbjct: 25 LAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGL 84
Query: 124 MFQSIGERL 132
+ ++
Sbjct: 85 VTAALATWF 93
Score = 29.1 bits (65), Expect = 0.26
Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 11/95 (11%)
Query: 160 MFATGLLSFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVALQGLL 212
A +L I+ G+ + E +Y + ++ T TT+G+GD +
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPVTLWG 67
Query: 213 RCEHAEATEINLMFATGLLSFIITTTGAAVFSKYE 247
RC + ++ + + +
Sbjct: 68 RC----VAVVVMVAGITSFGLVTAALATWFVGREQ 98
Score = 26.8 bits (59), Expect = 1.7
Identities = 12/56 (21%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 225 MFATGLLSFIITTTGAAVFSKYEGW-------SYFDSFYYCFVTLTTIGFGDYVAL 273
A +L I+ G+ + E +Y + ++ T TT+G+GD +
Sbjct: 8 AGAATVLLVIVLLAGSYLAVLAERGAPGAQLITYPRALWWSVETATTVGYGDLYPV 63
>d3ygsp_ a.77.1.3 (P:) Procaspase 9 prodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 97
Score = 27.2 bits (60), Expect = 1.1
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 34 ERRRWELLQSFRDEMLRKYNISQIDYHMLEIVVIEN 69
+ LL+ R ++ + + Q+ +L +
Sbjct: 3 DEADRRLLRRCRLRLVEELQVDQLWDVLLSRELFRP 38
>d1xqoa_ a.96.1.6 (A:) 8-oxoguanine DNA glycosylase, AgoG
{Pyrobaculum aerophilum [TaxId: 13773]}
Length = 253
Score = 26.3 bits (58), Expect = 4.9
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 205 YVALQGLLRCEHAEATEINLMFATGLLSFIITTTGAA---VFSKY 246
Y A+ +++ H E L L+S+ +T G F KY
Sbjct: 31 YRAVCNVVK-RHGETVGSRLAMLNALISYRLTGKGEEHWEYFGKY 74
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces
coelicolor [TaxId: 1902]}
Length = 57
Score = 23.6 bits (51), Expect = 8.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 185 SYFDSFYYCFVTLTTIGF 202
+Y + ++ T TT+G+
Sbjct: 40 TYPRALWWACETATTVGY 57
Score = 23.6 bits (51), Expect = 8.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 250 SYFDSFYYCFVTLTTIGF 267
+Y + ++ T TT+G+
Sbjct: 40 TYPRALWWACETATTVGY 57
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.328 0.141 0.427
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,253,273
Number of extensions: 57621
Number of successful extensions: 172
Number of sequences better than 10.0: 1
Number of HSP's gapped: 171
Number of HSP's successfully gapped: 22
Length of query: 342
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,226,816
Effective search space: 314064896
Effective search space used: 314064896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.5 bits)