BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1385
(69 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPD|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPD|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 67
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 3 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38
>pdb|2VPB|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 65
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 2 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 37
>pdb|2DX8|A Chain A, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
pdb|2DX8|B Chain B, Crystal Structure Analysis Of The Phd Domain Of The
Transcription Coactivator Pygophus
Length = 67
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 3 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38
>pdb|2YYR|A Chain A, Structural Analysis Of Phd Domain Of Pygopus Complexed
With Trimethylated Histone H3 Peptide
pdb|2YYR|B Chain B, Structural Analysis Of Phd Domain Of Pygopus Complexed
With Trimethylated Histone H3 Peptide
Length = 67
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 3 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 38
>pdb|2VPE|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPE|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-bcl9
Wnt Signaling Complex
pdb|2VPG|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
pdb|2VPG|C Chain C, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 63
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 37 APPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
A +YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 2 AMAVYPCGICTNEVNDDQDAILCEASCQKWFHR 34
>pdb|2VP7|A Chain A, Decoding Of Methylated Histone H3 Tail By The Pygo-Bcl9
Wnt Signaling Complex
Length = 71
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C ++HR
Sbjct: 3 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKFFHR 38
>pdb|2XB1|A Chain A, Crystal Structure Of The Human Pygo2 Phd Finger In
Complex With The B9l Hd1 Domain
pdb|2XB1|C Chain C, Crystal Structure Of The Human Pygo2 Phd Finger In
Complex With The B9l Hd1 Domain
Length = 105
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 40 IYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+YPCG C EV+D+ AILCE+ C W+HR
Sbjct: 3 VYPCGACRSEVNDDQDAILCEASCQKWFHR 32
>pdb|1FPS|A Chain A, Crystal Structure Of Recombinant Farnesyl Diphosphate
Synthase At 2.6 Angstroms Resolution
Length = 348
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 35 PNAPPIYPCGICHKEVHDNDQAILCESGCNF 65
P A +Y GI KE H+N +AIL E G F
Sbjct: 204 PVAAAMYMVGIDSKEEHENAKAILLEMGEYF 234
>pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 35 PNAPPIYPCGICHKEVHDNDQAILCESGCNF 65
P A +Y GI KE H+N +AIL E G F
Sbjct: 223 PVAAAMYMVGIDSKEEHENAKAILLEMGEYF 253
>pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBW|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
pdb|1UBY|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase
Length = 367
Score = 28.9 bits (63), Expect = 0.84, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 35 PNAPPIYPCGICHKEVHDNDQAILCESGCNF 65
P A +Y GI KE H+N +AIL E G F
Sbjct: 223 PVAAAMYMVGIDSKEEHENAKAILLEMGEYF 253
>pdb|2JOD|A Chain A, Pac1-Rshort N-Terminal Ec Domain Pacap(6-38) Complex
Length = 106
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 12 KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAIL 58
K +C KI N+ M FN +P P ++ C K H + ++
Sbjct: 13 KEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLV 59
>pdb|2VA8|A Chain A, Dna Repair Helicase Hel308
pdb|2VA8|B Chain B, Dna Repair Helicase Hel308
Length = 715
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 6 PGFPNTKPMPVCAGKIYPENQAMVFN 31
P N +P+P+ G IYPE + +N
Sbjct: 199 PVATNWRPVPLIEGVIYPERKKKEYN 224
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 12 KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILC 59
K +C KI N+ M FN +P P ++ C K H + ++
Sbjct: 379 KEQAMCLEKIQRANELMGFNDSSPGCPGMWDNITCWKPAHVGEMVLVS 426
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.142 0.511
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,771,809
Number of Sequences: 62578
Number of extensions: 99592
Number of successful extensions: 215
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 18
length of query: 69
length of database: 14,973,337
effective HSP length: 39
effective length of query: 30
effective length of database: 12,532,795
effective search space: 375983850
effective search space used: 375983850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)