BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1385
         (69 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9V9W8|PYGO_DROME Protein pygopus OS=Drosophila melanogaster GN=pygo PE=1 SV=1
          Length = 815

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/58 (74%), Positives = 51/58 (87%)

Query: 12  KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           KPM +  GK+YP  Q MVFNPQNPNAPPIYPCG+CHKEV+DND+A+ CESGCNF++HR
Sbjct: 719 KPMTMGGGKMYPPGQPMVFNPQNPNAPPIYPCGMCHKEVNDNDEAVFCESGCNFFFHR 776


>sp|Q9Y3Y4|PYGO1_HUMAN Pygopus homolog 1 OS=Homo sapiens GN=PYGO1 PE=1 SV=2
          Length = 419

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 39  PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 339 PVYPCGICTNEVNDDQDAILCEASCQKWFHR 369


>sp|Q9D0P5|PYGO1_MOUSE Pygopus homolog 1 OS=Mus musculus GN=Pygo1 PE=1 SV=1
          Length = 417

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 19/31 (61%), Positives = 24/31 (77%)

Query: 39  PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           P+YPCGIC  EV+D+  AILCE+ C  W+HR
Sbjct: 337 PVYPCGICTNEVNDDQDAILCEASCQKWFHR 367


>sp|Q9BRQ0|PYGO2_HUMAN Pygopus homolog 2 OS=Homo sapiens GN=PYGO2 PE=1 SV=2
          Length = 406

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 40  IYPCGICHKEVHDNDQAILCESGCNFWYHR 69
           +YPCG C  EV+D+  AILCE+ C  W+HR
Sbjct: 327 VYPCGACRSEVNDDQDAILCEASCQKWFHR 356


>sp|Q0CJV3|VPS27_ASPTN Vacuolar protein sorting-associated protein 27 OS=Aspergillus
           terreus (strain NIH 2624 / FGSC A1156) GN=vps27 PE=3
           SV=1
          Length = 556

 Score = 29.6 bits (65), Expect = 6.1,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 12/49 (24%)

Query: 3   PGGPGFPNTKP-MPVCA-----------GKIYPENQAMVFNPQNPNAPP 39
           P GPG+PN  P MP  A           G    EN     NPQ P A P
Sbjct: 456 PSGPGYPNVYPSMPPTAEGKAGAENFYYGNSVVENPLTASNPQYPQAAP 504


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.142    0.511 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,164,346
Number of Sequences: 539616
Number of extensions: 1265660
Number of successful extensions: 3279
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3268
Number of HSP's gapped (non-prelim): 18
length of query: 69
length of database: 191,569,459
effective HSP length: 41
effective length of query: 28
effective length of database: 169,445,203
effective search space: 4744465684
effective search space used: 4744465684
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)