RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1385
(69 letters)
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling
pathway, WNT signaling complex, chromosomal
rearrangement, signaling protein; 1.59A {Homo sapiens}
PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Length = 65
Score = 57.0 bits (137), Expect = 3e-13
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 34 NPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+ ++ P+YPCGIC EV+D+ AILCE+ C W+HR
Sbjct: 2 HSSSDPVYPCGICTNEVNDDQDAILCEASCQKWFHR 37
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion
protein, signal transduction, transcription, metal BI
WNT proteins; 1.90A {Homo sapiens}
Length = 105
Score = 51.5 bits (122), Expect = 1e-10
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 39 PIYPCGICHKEVHDNDQAILCESGCNFWYHR 69
+YPCG C EV+D+ AILCE+ C W+HR
Sbjct: 2 LVYPCGACRSEVNDDQDAILCEASCQKWFHR 32
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 28.6 bits (64), Expect = 0.11
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 25 NQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILC 59
+ + + P P + CH ++ D D A
Sbjct: 76 SYGALMDINEPRFP--FHAAECHLQLGDLDGAESG 108
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 64
Score = 27.1 bits (60), Expect = 0.16
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 42 PCGICHKEVHDNDQAILCESGCNFWYH 68
CG C + ++ I C+ C W+H
Sbjct: 8 QCGACGESYAADEFWICCD-LCEMWFH 33
>2k16_A Transcription initiation factor TFIID subunit 3; protein,
alternative splicing, metal-binding, nucleus,
phosphoprotein, transcription regulation; NMR {Mus
musculus} PDB: 2k17_A*
Length = 75
Score = 27.1 bits (60), Expect = 0.19
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 39 PIYPCGICHKEVHDNDQAILCESGCNFWYH 68
I+ C C+K D I C+ C+ WYH
Sbjct: 17 QIWICPGCNK-PDDGSPMIGCD-DCDDWYH 44
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification,
leukemia, alternative splicing, chromatin regulator,
developmental protein; NMR {Homo sapiens} PDB: 2kgi_A*
3gl6_A*
Length = 52
Score = 26.4 bits (58), Expect = 0.25
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 42 PCGICHKEVHDNDQAILCESGCNFWYH 68
C + D + C+ GC+ W+H
Sbjct: 4 AAQNCQRPCKDKVDWVQCDGGCDEWFH 30
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 27.1 bits (60), Expect = 0.31
Identities = 5/34 (14%), Positives = 9/34 (26%), Gaps = 2/34 (5%)
Query: 26 QAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILC 59
A + + G C + +A C
Sbjct: 95 VAFALGKNDYTPV--FHTGQCQLRLKAPLKAKEC 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.3 bits (60), Expect = 0.36
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 26 QAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCN 64
+V N NP I+ G K + +N A++ E+ +
Sbjct: 1662 LDIVIN--NPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 26.1 bits (56), Expect = 0.94
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 43 CGICHKEVHDNDQA---ILCESGCNFWYH 68
C +C K D+D + C C+ W H
Sbjct: 5 CPLCDKCYDDDDYESKMMQCG-KCDRWVH 32
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 25.4 bits (55), Expect = 0.98
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 42 PCGICHKEVHDNDQAILCESGCNFWYH 68
C IC N IL CN H
Sbjct: 27 VCSICMDGESQNSNVILFCDMCNLAVH 53
>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;
manno-octulosonate, synthase, lipopolysaccharide, KDOP,
KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B}
PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A
3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A*
1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*
Length = 280
Score = 25.6 bits (57), Expect = 1.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 53 NDQAILCESGCNFWYH 68
N + ILCE G +F Y
Sbjct: 157 NGKLILCERGSSFGYD 172
>3pur_A Lysine-specific demethylase 7 homolog;
oxidoreductase-oxidoreductase inhibitor complex; HET:
2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A*
3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Length = 528
Score = 25.8 bits (55), Expect = 1.3
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 39 PIYPCGICHKEVHDNDQAILCESGCNFWYH 68
P+ H ++ Q I C+ C WYH
Sbjct: 41 PLMSKKKSHHHKKNDFQWIGCD-SCQTWYH 69
>2nwr_A 2-dehydro-3-deoxyphosphooctonate aldolase; KDO, KDO8P, KDO8PS, PEP,
A5P, transferase; HET: PEP; 1.50A {Aquifex aeolicus}
PDB: 2nws_A* 2nx1_A* 3e0i_A* 1fwn_A* 1fwt_A* 1fws_A*
1fx6_A 1fww_A 1fxq_A* 1fy6_A* 1jcx_A* 1jcy_A* 1pck_A*
1pcw_A* 1fxp_A* 2a21_A* 2a2i_A* 1pe1_A* 3e12_A* 2nx3_A*
...
Length = 267
Score = 25.6 bits (57), Expect = 1.4
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 53 NDQAILCESGCNFWYH 68
+ L E G F Y+
Sbjct: 146 AKEIYLTERGTTFGYN 161
>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics,
transferase; 1.80A {Haemophilus influenzae} SCOP:
c.1.10.4 PDB: 3e9a_A
Length = 292
Score = 25.2 bits (56), Expect = 1.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 53 NDQAILCESGCNFWYH 68
ND+ ILC+ G NF Y
Sbjct: 160 NDKIILCDRGTNFGYD 175
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A*
3und_A*
Length = 285
Score = 25.2 bits (56), Expect = 1.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 53 NDQAILCESGCNFWYH 68
ND+ +LCE G +F Y
Sbjct: 162 NDRVMLCERGSSFGYD 177
>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural
genomics, seattle structural genomics CEN infectious
disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A
Length = 288
Score = 25.2 bits (56), Expect = 1.5
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 48 KEVHDNDQAILCESGCNFWYH 68
+ D+ + CE G +F Y+
Sbjct: 160 EAGLSEDRFMACERGVSFGYN 180
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules,
epigenetic regulation, trimethylaion of lysine residue,
ligase-DNA binding protein; HET: M3L; 2.90A {Homo
sapiens}
Length = 226
Score = 25.5 bits (55), Expect = 1.5
Identities = 9/57 (15%), Positives = 18/57 (31%), Gaps = 2/57 (3%)
Query: 12 KPMPVCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH 68
PM + + C +C D D+ ++C+ C+ +H
Sbjct: 146 SPMVDNPMRRKSGPSCKHCKDDVNRLCRVCACHLCGGR-QDPDKQLMCD-ECDMAFH 200
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 24.5 bits (53), Expect = 1.6
Identities = 9/27 (33%), Positives = 9/27 (33%)
Query: 42 PCGICHKEVHDNDQAILCESGCNFWYH 68
C IC N IL CN H
Sbjct: 18 VCSICMDGESQNSNVILFCDMCNLAVH 44
>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla
melitensis, DAHP synthetase I, cytoplasm,
lipopolysaccharide biosynthesis; HET: PG4; 1.85A
{Brucella melitensis}
Length = 298
Score = 25.3 bits (56), Expect = 1.7
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 53 NDQAILCESGCNFWYH 68
N + E G +F Y+
Sbjct: 183 NPNVLATERGVSFGYN 198
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 25.1 bits (55), Expect = 2.2
Identities = 11/60 (18%), Positives = 16/60 (26%), Gaps = 3/60 (5%)
Query: 6 PGFPNTKPMPVCAGKIYPENQAMVFNPQNPNAP---PIYPCGICHKEVHDNDQAILCESG 62
P KP I E + N NP + P + ++ SG
Sbjct: 9 PIETAVKPPHRTEDNIRDEARRNRSNAVNPFSAKYVPFNAAPGSTESYSLDEIVYRSRSG 68
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural
genomics center for infectious hydrolase; 1.70A
{Mycobacterium smegmatis} PDB: 3ijf_X
Length = 150
Score = 24.4 bits (53), Expect = 3.5
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 34 NPNAPPIYPCGIC 46
P+ + PCG C
Sbjct: 99 GPDGGVLMPCGRC 111
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K
polypeptide; transcription, mRNA, multiprotein complex;
HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP:
g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L
1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L*
1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L
1y77_L* ...
Length = 70
Score = 23.7 bits (51), Expect = 3.9
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 31 NPQNPNAPPIYPCGICHKEVH-DNDQAILC-ESGCNFWY 67
Q A Y C C ++ A+ C + G
Sbjct: 19 TSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILL 57
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 24.4 bits (53), Expect = 3.9
Identities = 5/35 (14%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 25 NQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILC 59
NQ ++ + + N + + AI
Sbjct: 540 NQGLLLSTNDANV--HTAIALVYLHKKIPGLAITH 572
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone
modifications, jumonji demethylase, mental retardation,
metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo
sapiens}
Length = 447
Score = 24.2 bits (51), Expect = 4.3
Identities = 6/26 (23%), Positives = 9/26 (34%), Gaps = 1/26 (3%)
Query: 43 CGICHKEVHDNDQAILCESGCNFWYH 68
+C I C+ C W+H
Sbjct: 7 YCLCRLPYDVTRFMIECD-MCQDWFH 31
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 24.1 bits (53), Expect = 4.5
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 43 CGICHKEVH 51
CG+CH ++H
Sbjct: 57 CGVCHSDLH 65
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing,
apobec-1 related protein, hydrolase; 2.00A
{Saccharomyces cerevisiae} SCOP: c.97.1.1
Length = 142
Score = 24.0 bits (52), Expect = 4.6
Identities = 4/13 (30%), Positives = 7/13 (53%)
Query: 34 NPNAPPIYPCGIC 46
+ + PCG+C
Sbjct: 87 DSEDQCVSPCGVC 99
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 24.2 bits (52), Expect = 4.6
Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 25 NQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILC 59
++A+ P+ A G + + D A C
Sbjct: 127 SKAVKLEPELVEA--WNQLGEVYWKKGDVTSAHTC 159
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 63
Score = 23.3 bits (50), Expect = 4.6
Identities = 10/37 (27%), Positives = 11/37 (29%), Gaps = 2/37 (5%)
Query: 33 QNPNAPPIYPCGICHKEVH-DNDQAILC-ESGCNFWY 67
A IY C C + I C E G Y
Sbjct: 14 PPRPATMIYLCADCGARNTIQAKEVIRCRECGHRVMY 50
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin
biosynthesis, metal-binding, NADP, oxidoreductase,
zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 24.1 bits (53), Expect = 5.0
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 43 CGICHKEVH 51
CGICH ++H
Sbjct: 44 CGICHTDLH 52
>3r2n_A Cytidine deaminase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
tuberculosis; 2.30A {Mycobacterium leprae}
Length = 138
Score = 23.9 bits (52), Expect = 5.0
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 34 NPNAPPIYPCGIC 46
+ N + PCG C
Sbjct: 84 DGNGDSLMPCGRC 96
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export,
transcription; 2.12A {Homo sapiens}
Length = 203
Score = 23.7 bits (51), Expect = 5.1
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 19 GKIYPENQAMVFNPQNP 35
G I ++Q +V + QNP
Sbjct: 179 GYISHQHQKLVVSKQNP 195
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 23.7 bits (52), Expect = 5.1
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 43 CGICHKEVH 51
GICH ++H
Sbjct: 39 AGICHSDIH 47
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology,
NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A
{Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB:
1ps0_A* 1q1n_A
Length = 360
Score = 24.0 bits (53), Expect = 5.2
Identities = 4/9 (44%), Positives = 7/9 (77%)
Query: 43 CGICHKEVH 51
CG+C ++H
Sbjct: 43 CGVCGSDIH 51
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural
genomics, MCSG, protein structure initiative; 1.90A
{Bacillus anthracis}
Length = 142
Score = 23.8 bits (51), Expect = 5.4
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 16 VCAGKIYPENQAMVFNPQNPNAPPIYPCGIC 46
K + + ++ + PCG+C
Sbjct: 62 HKFQKKVTHSICLARENEHSELKVLSPCGVC 92
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 23.5 bits (50), Expect = 5.7
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 42 PCGICHKEVHDNDQAILCESGCNFWYH 68
C +C + + ++ C+ YH
Sbjct: 18 ACVVCRQMTVASGNQLVECQECHNLYH 44
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol,
oxidoreductase, zinc-dependent, plant DE biosynthesis,
substrate inhibition; HET: NAP; 1.65A {Populus
tremuloides} PDB: 1yqx_A*
Length = 366
Score = 23.7 bits (52), Expect = 5.7
Identities = 5/9 (55%), Positives = 8/9 (88%)
Query: 43 CGICHKEVH 51
CG+CH ++H
Sbjct: 51 CGVCHSDLH 59
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 23.7 bits (50), Expect = 5.9
Identities = 7/30 (23%), Positives = 11/30 (36%), Gaps = 3/30 (10%)
Query: 43 CGICHKEVHDNDQA--ILCE-SGCNFWYHR 69
C IC D + + C+ + C H
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHA 340
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for
infectious disease, hydrolase; 1.70A {Coccidioides
immitis}
Length = 158
Score = 23.7 bits (51), Expect = 5.9
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 34 NPNAPPIYPCGIC 46
N + PCG C
Sbjct: 103 NEGRGILSPCGRC 115
>1wem_A Death associated transcription factor 1; structural genomics, PHD
domain, death inducer- obliterator 1(DIO-1); NMR {Mus
musculus} SCOP: g.50.1.2
Length = 76
Score = 23.0 bits (49), Expect = 6.4
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 31 NPQNPNAPPIYPCGICHKEVHDNDQAILCESGCNFWYH 68
+ + P IC ++ H+N I C+ C W+H
Sbjct: 6 SGECEVYDPNALYCIC-RQPHNNRFMICCD-RCEEWFH 41
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine
metabolism, salvage, hydrolase; HET: THU; 1.99A
{Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A*
1ux1_A*
Length = 136
Score = 23.6 bits (51), Expect = 6.5
Identities = 5/13 (38%), Positives = 6/13 (46%)
Query: 35 PNAPPIYPCGICH 47
P+ PCG C
Sbjct: 78 DTPGPVSPCGACR 90
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides,
nucleotides, salvage of nucleosides and nucleotides,
structural genomics; 2.40A {Bacillus anthracis} SCOP:
c.97.1.1
Length = 141
Score = 23.5 bits (51), Expect = 6.6
Identities = 5/12 (41%), Positives = 6/12 (50%)
Query: 35 PNAPPIYPCGIC 46
P+ PCG C
Sbjct: 87 DTKRPVPPCGAC 98
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family,
zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus}
SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A
2z3i_A*
Length = 130
Score = 23.2 bits (50), Expect = 6.7
Identities = 6/13 (46%), Positives = 7/13 (53%)
Query: 34 NPNAPPIYPCGIC 46
N N + PCG C
Sbjct: 79 NENRGILSPCGRC 91
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, DNA
binding protein; NMR {Arabidopsis thaliana} SCOP:
g.50.1.2
Length = 72
Score = 22.9 bits (49), Expect = 7.0
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 45 ICHKEVHDNDQAILCESGCNFWYH 68
C + D ++ + C+ GC W+H
Sbjct: 20 KCGTKDDDGERMLACD-GCGVWHH 42
>3dmo_A Cytidine deaminase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid,
hydrolase; 1.60A {Burkholderia pseudomallei}
Length = 138
Score = 22.9 bits (49), Expect = 9.1
Identities = 7/25 (28%), Positives = 8/25 (32%)
Query: 22 YPENQAMVFNPQNPNAPPIYPCGIC 46
Y + PI PCG C
Sbjct: 75 YRPGEFAAIAVVGETHGPIAPCGAC 99
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.142 0.511
Gapped
Lambda K H
0.267 0.0556 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,128,540
Number of extensions: 50362
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 193
Number of HSP's successfully gapped: 60
Length of query: 69
Length of database: 6,701,793
Length adjustment: 39
Effective length of query: 30
Effective length of database: 5,612,874
Effective search space: 168386220
Effective search space used: 168386220
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)