RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1385
         (69 letters)



>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 64

 Score = 27.7 bits (61), Expect = 0.040
 Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 1/26 (3%)

Query: 43 CGICHKEVHDNDQAILCESGCNFWYH 68
          CG C +    ++  I C+  C  W+H
Sbjct: 9  CGACGESYAADEFWICCD-LCEMWFH 33


>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 88

 Score = 27.9 bits (61), Expect = 0.050
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 43 CGICHKEVHDNDQAILCESGCNFWYH 68
          C +C +    +   ++    C+  YH
Sbjct: 19 CVVCRQMTVASGNQLVECQECHNLYH 44


>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 72

 Score = 25.0 bits (54), Expect = 0.47
 Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 45 ICHKEVHDNDQAILCESGCNFWYH 68
           C  +  D ++ + C+ GC  W+H
Sbjct: 20 KCGTKDDDGERMLACD-GCGVWHH 42


>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress
          (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 78

 Score = 22.8 bits (48), Expect = 3.2
 Identities = 4/24 (16%), Positives = 9/24 (37%)

Query: 45 ICHKEVHDNDQAILCESGCNFWYH 68
          +C   +  +      +  C+ W H
Sbjct: 20 VCGNSLETDSMIQCEDPRCHVWQH 43


>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 89

 Score = 23.0 bits (49), Expect = 3.4
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 23 PENQAMVFNPQNPNAPPIYPCGICHKEVHDN 53
            N  M    +   A  ++PC +C +  HD 
Sbjct: 12 VVNDEMCDVCEVWTAESLFPCRVCTRVFHDG 42


>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
          factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
          Length = 51

 Score = 22.2 bits (47), Expect = 3.4
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 2/26 (7%)

Query: 43 CGICHKEVHDNDQAILCESGCNFWYH 68
          C +C K     D  ++    CN  +H
Sbjct: 3  CKVCRK--KGEDDKLILCDECNKAFH 26


>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 22.0 bits (46), Expect = 4.6
 Identities = 5/27 (18%), Positives = 7/27 (25%)

Query: 43 CGICHKEVHDNDQAILCESGCNFWYHR 69
          C  C    + N    L  + C      
Sbjct: 6  CPRCKTTKYRNPSLKLMVNVCGHTLCE 32


>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
          Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 76

 Score = 22.0 bits (46), Expect = 5.5
 Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)

Query: 45 ICHKEVHDNDQAILCESGCNFWYH 68
          IC +  H+N   I C+  C  W+H
Sbjct: 20 ICRQ-PHNNRFMICCD-RCEEWFH 41


>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
          [TaxId: 10090]}
          Length = 79

 Score = 22.3 bits (47), Expect = 5.7
 Identities = 7/26 (26%), Positives = 11/26 (42%), Gaps = 1/26 (3%)

Query: 43 CGICHKEVHDNDQAILCESGCNFWYH 68
            +C +  + N   I C   C  W+H
Sbjct: 14 YCLCRQPYNVNHFMIECGL-CQDWFH 38


>d1gsoa1 b.84.2.1 (A:328-426) Glycinamide ribonucleotide
          synthetase (GAR-syn), C-domain {Escherichia coli
          [TaxId: 562]}
          Length = 99

 Score = 22.2 bits (47), Expect = 6.9
 Identities = 7/47 (14%), Positives = 12/47 (25%)

Query: 16 VCAGKIYPENQAMVFNPQNPNAPPIYPCGICHKEVHDNDQAILCESG 62
          V A   YP +              +    + H      D   +  +G
Sbjct: 8  VMAAGGYPGDYRTGDVIHGLPLEEVAGGKVFHAGTKLADDEQVVTNG 54


>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia
          coli [TaxId: 562]}
          Length = 268

 Score = 21.8 bits (45), Expect = 9.4
 Identities = 5/25 (20%), Positives = 11/25 (44%)

Query: 41 YPCGICHKEVHDNDQAILCESGCNF 65
          + C +CH+ +     + +C     F
Sbjct: 2  FSCPLCHQPLSREKNSYICPQRHQF 26


>d2z3ga1 c.97.1.1 (A:2-124) Blasticidin-S deaminase {Aspergillus
           terreus [TaxId: 33178]}
          Length = 123

 Score = 21.8 bits (46), Expect = 9.9
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 34  NPNAPPIYPCGICH---KEVHDNDQAILCESG 62
           N N   + PCG C     ++H   +AI+ +S 
Sbjct: 78  NENRGILSPCGRCRQVLLDLHPGIKAIVKDSD 109


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.142    0.511 

Gapped
Lambda     K      H
   0.267   0.0582    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 301,420
Number of extensions: 11546
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 27
Length of query: 69
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 32
Effective length of database: 1,899,586
Effective search space: 60786752
Effective search space used: 60786752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)