BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13851
(331 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
Length = 471
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 116/285 (40%), Positives = 159/285 (55%), Gaps = 45/285 (15%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
++T+SI+SA G Y E+CSSTLA+T+S+G ++ + TTDL KCT +H+GTSA+
Sbjct: 205 IYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQ-IVTTDLRQKCTESHTGTSAS 263
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAG+ AL LEAN LTWRD+
Sbjct: 264 APLAAGIIALTLEAN-------------------------------------KNLTWRDM 286
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPARYH 180
QHL V TSK L W NGVG + +H +G+G+LDAGAMVALA+ W TV +
Sbjct: 287 QHLVVQTSKPAHL----NADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRK 342
Query: 181 CEAGSVKQVTEIPSSRSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTS 240
C + + +I + + ++ AC GE ++ +EHVQA +TL+ RG + + L S
Sbjct: 343 CIVEILVEPKDI--GKRLEVRKAVTACLGEPNHITRLEHVQARLTLSYNRRGDLAIHLIS 400
Query: 241 PMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEV 285
PMGTRS +L+ R +D DGF W FMTTH+W E P G W+LE+
Sbjct: 401 PMGTRSTLLAARPHDY-SADGFNDWAFMTTHSWDEDPAGEWVLEI 444
>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
Length = 503
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 49/288 (17%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
+++I+I + + + Y E CS+ +A T+S+G+ + + ++D+ G+C+ +H GTSAA
Sbjct: 218 IYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEY---IHSSDINGRCSNSHGGTSAA 274
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAGV+ L LEANP LTWRD+Q+L++L++ GL
Sbjct: 275 APLAAGVYTLLLEANPNLTWRDVQYLSILSA-----------------VGL--------- 308
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPAR-- 178
++N+ D W + +G +++H +GFG +DA ++ ++K W+ V A+
Sbjct: 309 --------EKNADGD------WRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTW 354
Query: 179 YHCEAGSVKQVTEIPSSRSILLKIKTNACEG-EDTQVSYVEHVQAVITLNATTRGAVELF 237
++ V Q T S+ L + T + + +D +EHV + ++ RG +
Sbjct: 355 FYLPTLYVSQSTN--STEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 412
Query: 238 LTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEV 285
L SP G S + R D +GF W FM+ WGE G W ++V
Sbjct: 413 LISPAGIISNLGVVRPRDV-SSEGFKDWTFMSVAHWGENGVGDWKIKV 459
>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
A Peptidyl- Boronic Acid Inhibitor
Length = 477
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 49/288 (17%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
+++I+I + + + Y E CS+ +A T+S+G+ + + ++D+ G+C+ +H GTSAA
Sbjct: 209 IYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEY---IHSSDINGRCSNSHGGTSAA 265
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAGV+ L LEANP LTWRD+Q+L++L++ GL
Sbjct: 266 APLAAGVYTLLLEANPNLTWRDVQYLSILSA-----------------VGL--------- 299
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPAR-- 178
++N+ D W + +G +++H +GFG +DA ++ ++K W+ V A+
Sbjct: 300 --------EKNADGD------WRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTW 345
Query: 179 YHCEAGSVKQVTEIPSSRSILLKIKTNACEG-EDTQVSYVEHVQAVITLNATTRGAVELF 237
++ V Q T S+ L + T + + +D +EHV + ++ RG +
Sbjct: 346 FYLPTLYVSQSTN--STEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 403
Query: 238 LTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEV 285
L SP G S + R D +GF W FM+ WGE G W ++V
Sbjct: 404 LISPAGIISNLGVVRPRDV-SSEGFKDWTFMSVAHWGENGVGDWKIKV 450
>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
Inhibitor
Length = 481
Score = 126 bits (316), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 145/288 (50%), Gaps = 49/288 (17%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
+++I+I + + + Y E CS+ +A T+S+G+ + + ++D+ G+C+ +H GTSAA
Sbjct: 211 IYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSGSGEY---IHSSDINGRCSNSHGGTSAA 267
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAGV+ L LEANP LTWRD+Q+L++L++ GL
Sbjct: 268 APLAAGVYTLLLEANPNLTWRDVQYLSILSA-----------------VGL--------- 301
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPAR-- 178
++N+ D W + +G +++H +GFG +DA ++ ++K W+ V A+
Sbjct: 302 --------EKNADGD------WRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTW 347
Query: 179 YHCEAGSVKQVTEIPSSRSILLKIKTNACEG-EDTQVSYVEHVQAVITLNATTRGAVELF 237
++ V Q T S+ L + T + + +D +EHV + ++ RG +
Sbjct: 348 FYLPTLYVSQSTN--STEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVD 405
Query: 238 LTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEV 285
L SP G S + R D +GF W FM+ WGE G W ++V
Sbjct: 406 LISPAGIISNLGVVRPRDV-SSEGFKDWTFMSVAHWGENGVGDWKIKV 452
>pdb|3HJR|A Chain A, Crystal Structure Of Serine Protease Of Aeromonas Sobria
Length = 600
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 113/282 (40%), Gaps = 62/282 (21%)
Query: 32 NGAKDPNT----GVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLT 87
N DP+T G + D +GTS+A P +G AL + A P L+ RD++ L
Sbjct: 306 NRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLL 365
Query: 88 VLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDIQHLTVL---TSKRNSLFDAKGRFHWTM 144
++ R D +H V+ TS + D KG W
Sbjct: 366 ARSATR------------------------VDAKHQPVMVSYTSSTGKVRDVKGLEGWER 401
Query: 145 NGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPARYHC---------EAGSVKQVTEIPSS 195
N G+ F+ +GFG++D + LA + +P A ++ V P+S
Sbjct: 402 NAAGMWFSPTYGFGLIDVNKALELAANHQPLPPLVQLPWQKINVTGSAAAIADVGNSPTS 461
Query: 196 RSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTSPMGTRSMILS----- 250
+ +I T VE VQ +++L+ + + L SP GTRS++LS
Sbjct: 462 STT--RIATPLT---------VEAVQVMVSLDHQRLPDLLIELVSPAGTRSILLSPFNSL 510
Query: 251 --KRINDND----RRDGFTKWPFMTTHTWGEYPQGTWLLEVS 286
+ ++ R G ++ +GE QGTW LEV+
Sbjct: 511 VGQSLDQQQLGFVRTKGLRDMRMLSNKFYGESAQGTWRLEVT 552
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 49 KCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86
T T SGTS A+P AGV AL L+ NP L+ + +L
Sbjct: 215 SATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNL 252
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
T T +GTS A P AGV AL LE NP T
Sbjct: 214 ATQTLNGTSMATPHVAGVAALYLEQNPSAT 243
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 53 THSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGS 104
T SGTS A P AGV AL L+ N LT +Q +L S+ + TRG+
Sbjct: 215 TISGTSMATPHVAGVAALYLQENNGLT--PLQLTGLLNSRASENKVSDTRGT 264
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GTS A P AGV AL + NP +W ++Q L + L
Sbjct: 196 GVNVQSTYPGSTYASLNGTSMATPHVAGVAALVKQKNP--SWSNVQIRNHLKNTATGLGN 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 40 GVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
GV Y G + +GT A P AG AL + NP +W ++Q L + SL
Sbjct: 196 GVNVQSTYPGSTYASLNGTXMATPHVAGAAALVKQKNP--SWSNVQIRNHLKNTATSLGS 253
Query: 99 CSTRGSWCVRS 109
+ GS V +
Sbjct: 254 TNLYGSGLVNA 264
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.131 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,603,184
Number of Sequences: 62578
Number of extensions: 372271
Number of successful extensions: 1044
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 978
Number of HSP's gapped (non-prelim): 78
length of query: 331
length of database: 14,973,337
effective HSP length: 99
effective length of query: 232
effective length of database: 8,778,115
effective search space: 2036522680
effective search space used: 2036522680
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)