Query psy13851
Match_columns 331
No_of_seqs 207 out of 1718
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 22:03:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 4E-61 8.6E-66 461.0 14.5 287 1-329 328-624 (629)
2 KOG3525|consensus 100.0 3.2E-34 7E-39 286.6 12.9 229 1-289 200-428 (431)
3 PF01483 P_proprotein: Proprot 99.9 6.7E-24 1.5E-28 167.9 9.7 86 217-309 1-87 (87)
4 COG4935 Regulatory P domain of 99.8 3.6E-20 7.9E-25 163.0 12.6 119 185-316 10-131 (177)
5 cd04059 Peptidases_S8_Protein_ 99.7 1.1E-16 2.5E-21 151.4 9.5 91 2-92 205-297 (297)
6 cd05562 Peptidases_S53_like Pe 99.7 2.3E-16 4.9E-21 149.8 9.3 91 2-93 147-252 (275)
7 cd07489 Peptidases_S8_5 Peptid 99.6 2.1E-15 4.6E-20 144.4 8.2 95 37-174 209-305 (312)
8 cd05561 Peptidases_S8_4 Peptid 99.6 4.2E-15 9E-20 138.0 8.2 83 2-93 144-226 (239)
9 PTZ00262 subtilisin-like prote 99.6 1.9E-14 4E-19 149.3 11.3 83 3-93 505-592 (639)
10 PF00082 Peptidase_S8: Subtila 99.5 1.2E-14 2.6E-19 135.5 8.1 84 3-93 165-257 (282)
11 cd07481 Peptidases_S8_Bacillop 99.5 2.7E-14 5.8E-19 133.8 8.3 83 2-92 174-264 (264)
12 cd04077 Peptidases_S8_PCSK9_Pr 99.5 3.3E-14 7.1E-19 132.1 8.1 85 2-93 170-255 (255)
13 cd04843 Peptidases_S8_11 Pepti 99.5 4.6E-14 1E-18 134.2 8.5 84 2-92 178-277 (277)
14 cd07479 Peptidases_S8_SKI-1_li 99.5 3.7E-14 7.9E-19 133.0 7.4 90 2-93 153-252 (255)
15 cd07474 Peptidases_S8_subtilis 99.5 4.8E-14 1E-18 133.2 7.3 57 37-93 214-271 (295)
16 cd07483 Peptidases_S8_Subtilis 99.5 7.8E-14 1.7E-18 133.0 8.2 82 3-92 206-291 (291)
17 cd07498 Peptidases_S8_15 Pepti 99.5 7.3E-14 1.6E-18 128.5 7.3 82 2-90 153-242 (242)
18 cd07475 Peptidases_S8_C5a_Pept 99.5 1.2E-13 2.6E-18 133.7 8.6 80 2-89 215-310 (346)
19 cd07493 Peptidases_S8_9 Peptid 99.5 1.2E-13 2.6E-18 129.0 8.1 83 2-92 173-261 (261)
20 cd07484 Peptidases_S8_Thermita 99.4 3.2E-13 6.8E-18 125.7 7.9 83 2-93 176-258 (260)
21 cd07485 Peptidases_S8_Fervidol 99.4 4.4E-13 9.5E-18 126.1 7.4 83 2-90 185-273 (273)
22 cd07477 Peptidases_S8_Subtilis 99.4 6.7E-13 1.5E-17 120.6 8.3 81 2-90 149-229 (229)
23 cd07496 Peptidases_S8_13 Pepti 99.4 3.5E-13 7.7E-18 127.5 6.4 82 2-90 190-285 (285)
24 cd07476 Peptidases_S8_thiazoli 99.4 6.3E-13 1.4E-17 125.7 7.5 85 2-94 161-252 (267)
25 cd07487 Peptidases_S8_1 Peptid 99.4 1E-12 2.3E-17 121.7 7.9 84 2-92 163-264 (264)
26 cd07490 Peptidases_S8_6 Peptid 99.4 1.3E-12 2.8E-17 120.9 7.4 90 2-92 151-254 (254)
27 cd04848 Peptidases_S8_Autotran 99.3 1.4E-12 3E-17 120.1 7.0 84 2-92 178-267 (267)
28 cd07473 Peptidases_S8_Subtilis 99.3 2.2E-12 4.8E-17 119.7 8.4 83 2-92 176-259 (259)
29 cd07492 Peptidases_S8_8 Peptid 99.3 3.3E-12 7.2E-17 116.3 8.2 88 4-92 123-222 (222)
30 cd07478 Peptidases_S8_CspA-lik 99.3 4.2E-12 9.1E-17 128.6 9.0 84 2-93 345-441 (455)
31 cd07482 Peptidases_S8_Lantibio 99.3 4.2E-12 9E-17 119.6 7.8 88 2-90 190-294 (294)
32 cd04847 Peptidases_S8_Subtilis 99.3 6.6E-12 1.4E-16 119.2 7.4 84 2-92 171-291 (291)
33 cd07497 Peptidases_S8_14 Pepti 99.3 8.7E-12 1.9E-16 120.6 7.8 83 2-91 193-311 (311)
34 cd07480 Peptidases_S8_12 Pepti 99.2 1.6E-11 3.5E-16 117.1 7.6 53 37-90 218-270 (297)
35 cd04842 Peptidases_S8_Kp43_pro 99.2 1.5E-11 3.3E-16 115.9 5.0 84 2-92 173-293 (293)
36 cd04857 Peptidases_S8_Tripepti 99.1 8.3E-11 1.8E-15 117.7 8.3 85 2-93 302-411 (412)
37 cd04852 Peptidases_S8_3 Peptid 99.1 1.4E-10 3E-15 111.1 6.4 90 3-92 205-307 (307)
38 cd07488 Peptidases_S8_2 Peptid 99.1 1.3E-10 2.9E-15 109.0 5.9 80 2-91 151-241 (247)
39 cd07494 Peptidases_S8_10 Pepti 99.1 3.5E-10 7.6E-15 108.7 8.3 44 50-93 241-284 (298)
40 cd00306 Peptidases_S8_S53 Pept 99.1 3.4E-10 7.4E-15 101.1 7.2 82 2-90 158-241 (241)
41 cd07491 Peptidases_S8_7 Peptid 98.9 1.4E-09 3.1E-14 101.8 5.7 66 2-74 162-229 (247)
42 KOG1153|consensus 98.5 9.7E-08 2.1E-12 95.1 4.7 84 3-93 369-462 (501)
43 KOG4266|consensus 98.0 8.5E-06 1.8E-10 84.2 5.0 90 1-93 344-444 (1033)
44 COG1404 AprE Subtilisin-like s 97.8 3.7E-05 8.1E-10 75.6 7.1 84 2-92 305-397 (508)
45 cd04056 Peptidases_S53 Peptida 97.0 0.0022 4.7E-08 63.4 8.2 26 51-76 274-299 (361)
46 KOG1114|consensus 97.0 0.0011 2.4E-08 71.7 5.7 42 52-93 491-536 (1304)
47 cd07478 Peptidases_S8_CspA-lik 84.8 4.5 9.8E-05 41.4 8.7 76 224-307 226-317 (455)
48 COG4934 Predicted protease [Po 84.7 1.5 3.2E-05 49.6 5.4 25 50-74 472-496 (1174)
49 PF09315 DUF1973: Domain of un 76.6 41 0.00088 30.3 11.0 53 227-289 36-88 (179)
50 PF01835 A2M_N: MG2 domain; I 72.6 12 0.00026 29.4 5.9 55 228-288 32-86 (99)
51 PF12975 DUF3859: Domain of un 61.9 25 0.00054 29.8 6.0 56 222-288 59-114 (125)
52 PF13940 Ldr_toxin: Toxin Ldr, 38.4 19 0.00041 23.8 1.2 14 59-72 14-27 (35)
53 PRK15019 CsdA-binding activato 31.9 35 0.00076 29.9 2.2 33 53-86 78-110 (147)
54 COG4676 Uncharacterized protei 30.9 4.6E+02 0.01 24.8 9.8 86 222-311 143-238 (268)
55 COG2166 sufE Cysteine desulfur 30.6 32 0.0007 30.1 1.8 33 53-86 73-105 (144)
56 PF11141 DUF2914: Protein of u 30.4 76 0.0016 23.8 3.6 18 272-289 37-54 (66)
57 smart00557 IG_FLMN Filamin-typ 30.4 2.3E+02 0.005 22.0 6.6 56 222-288 22-77 (93)
58 TIGR03391 FeS_syn_CsdE cystein 30.2 38 0.00082 29.3 2.1 33 53-86 73-105 (138)
59 PRK09296 cysteine desufuration 27.8 44 0.00094 28.9 2.1 33 53-86 68-100 (138)
60 PF02657 SufE: Fe-S metabolism 27.0 56 0.0012 27.6 2.6 32 54-86 60-91 (125)
61 TIGR00868 hCaCC calcium-activa 26.3 3.1E+02 0.0067 30.9 8.7 51 227-288 522-572 (863)
62 PF11903 DUF3423: Protein of u 25.3 79 0.0017 24.4 2.9 25 68-92 35-59 (72)
63 PF06366 FlhE: Flagellar prote 24.0 3.5E+02 0.0076 22.4 6.7 59 216-289 28-86 (106)
64 PF14326 DUF4384: Domain of un 21.9 2E+02 0.0044 22.0 4.7 31 222-252 9-39 (83)
No 1
>KOG3526|consensus
Probab=100.00 E-value=4e-61 Score=460.97 Aligned_cols=287 Identities=67% Similarity=1.100 Sum_probs=275.0
Q ss_pred CEEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCH
Q psy13851 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTW 80 (331)
Q Consensus 1 ~~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~ 80 (331)
|+||+|.|+-++|+.+.|.|.|+++++++||+|..+|..++.|||+.|.|+..++|||+|||-+||+.||.|++||.|||
T Consensus 328 mwtisinsaindg~nahydescsstlastfsng~rnpetgvattdlyg~ct~~hsgtsaaapeaagvfalaleanp~ltw 407 (629)
T KOG3526|consen 328 MWTISINSAINDGENAHYDESCSSTLASTFSNGGRNPETGVATTDLYGRCTRSHSGTSAAAPEAAGVFALALEANPSLTW 407 (629)
T ss_pred eEEEEeehhhcCCccccccchhhHHHHHHhhcCCcCCCcceeeeccccceecccCCccccCccccceeeeeeccCCCcch
Confidence 79999999999999999999999999999999998999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcccccCCCCcceeecCCCCccccccccceeeeeccccccccccCCCCceecccCcccccccccccc
Q psy13851 81 RDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDIQHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVL 160 (331)
Q Consensus 81 ~~v~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~~~W~~n~~G~~~s~~~GfG~v 160 (331)
||+|++ .++||++|+++|......|+.|+.|+.|+|.||||.+
T Consensus 408 rd~qhl-------------------------------------tvltskrnslfd~~~rf~w~mngvglefnhlfgfgvl 450 (629)
T KOG3526|consen 408 RDLQHL-------------------------------------TVLTSKRNSLFDGRCRFEWQMNGVGLEFNHLFGFGVL 450 (629)
T ss_pred hhhhhe-------------------------------------eeeecccchhhcccceEEEeccccceeeecccccccc
Confidence 999999 7889999999998888899999999999999999999
Q ss_pred ChHHHHHHhhcccccCCcceecccceeeeeeeCCCCeEEEEEEeecccCCCCccceeeeEEEEEEEeeccccceEEEEeC
Q psy13851 161 DAGAMVALAKQWKTVPARYHCEAGSVKQVTEIPSSRSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTS 240 (331)
Q Consensus 161 da~~av~~a~~~~~~~~~~~~~~~~~~~~~~Ip~~~~l~~~i~~~~~~~~~~~v~~iE~V~v~v~i~h~~~GdL~I~L~S 240 (331)
||.++|.+|+.|+++|++++|+.+.+.++..||..+.+-++|+.++|.|.+..++++||||..++...++||||.|.|+|
T Consensus 451 dagamv~lak~wktvppryhc~ag~i~~p~~ip~~g~l~lei~tdac~g~~~evrylehvqavis~natrrgdl~l~lts 530 (629)
T KOG3526|consen 451 DAGAMVMLAKAWKTVPPRYHCTAGLIDTPHEIPADGNLILEINTDACAGSQFEVRYLEHVQAVISFNATRRGDLTLYLTS 530 (629)
T ss_pred cHHHHHHHHHHhccCCCceeecccccCCcccccCCCcEEEEEecccccCchhhHHHHHhhheeeEeccccccceeEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEcccCCCCcccccEEEEEEEEEeeeecC------
Q psy13851 241 PMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYILAGLPMLFIINLTITWALTARRVLL------ 314 (331)
Q Consensus 241 PsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~~~~~~~~~~~tG~L~~W~L~~~g~~~------ 314 (331)
|+||+++|++.|+.|+++.+||..|+||+.+-|||+|+|+|+|+.....++.. .|+|++|+|.++|+..
T Consensus 531 pmgtksmilsrrp~dddskdgftkwpfmtthtwge~p~gtw~learf~gp~~~-----~g~lkew~lmlhgt~eapy~~i 605 (629)
T KOG3526|consen 531 PMGTKSMILSRRPKDDDSKDGFTKWPFMTTHTWGENPTGTWRLEARFQGPGAH-----AGTLKEWELMLHGTREAPYNLI 605 (629)
T ss_pred CCCceeeEeecCCCCcccccccccCceeeecccCcCCCceEEEEEeccCCccc-----ccchhheeeeeeccccCccccc
Confidence 99999999999999999999999999999999999999999999998888775 8999999999999653
Q ss_pred ----CCcchhhHHHhhhhc
Q psy13851 315 ----RDNHAMMRHLKRTHE 329 (331)
Q Consensus 315 ----~~~~~~~~~~~~~~~ 329 (331)
++.+.|...+|.+|+
T Consensus 606 ~piv~~~~skla~vkkah~ 624 (629)
T KOG3526|consen 606 EPIVGQTNSKLATVKKAHL 624 (629)
T ss_pred ccccccchhhHHHHHHHhh
Confidence 566778888888874
No 2
>KOG3525|consensus
Probab=100.00 E-value=3.2e-34 Score=286.58 Aligned_cols=229 Identities=47% Similarity=0.807 Sum_probs=200.6
Q ss_pred CEEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCH
Q psy13851 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTW 80 (331)
Q Consensus 1 ~~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~ 80 (331)
+|++++++++..|..++|++.|+..+++++++++. +...|.++++.+.|.....|||+++|+.||+++|.++++|.|++
T Consensus 200 i~t~~~~~~~~~~~~p~y~~~C~~~~~s~~s~~~~-~~~~~~~~~~~~~c~e~h~g~s~~~~~~a~~~~~~~~~~~~ls~ 278 (431)
T KOG3525|consen 200 IYTLSISCATQCGKKPQYRERCASCLASTYSSGGP-TEECIVCTDPRHSCTEGHTGTSASAPLAAGIIALALEANPCLSW 278 (431)
T ss_pred ceecccccccccCCCccccccccccccccccCCCC-cceeeeecCCCccccccCCCCcCccchhcchhhhhhccCccccc
Confidence 68999999999999999999999999999998875 56779999999889999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCcccccCCCCcceeecCCCCccccccccceeeeeccccccccccCCCCceecccCcccccccccccc
Q psy13851 81 RDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDIQHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVL 160 (331)
Q Consensus 81 ~~v~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~~~W~~n~~G~~~s~~~GfG~v 160 (331)
+++++++..++.. ....+ ..|+.|++|..|+|.||||++
T Consensus 279 ~d~~~l~~~~~~~-------------------------------------~~~~~----~~~~~n~~g~~~~h~~g~~~~ 317 (431)
T KOG3525|consen 279 RDSQHLIVLTSRP-------------------------------------KVLLK----GKWKSNGAGGLVSHLYGFGLL 317 (431)
T ss_pred cchhhhhhhhcch-------------------------------------hhccC----CCceEecCCceeeeeeccccc
Confidence 9999998777653 11222 489999999999999999999
Q ss_pred ChHHHHHHhhcccccCCcceecccceeeeeeeCCCCeEEEEEEeecccCCCCccceeeeEEEEEEEeeccccceEEEEeC
Q psy13851 161 DAGAMVALAKQWKTVPARYHCEAGSVKQVTEIPSSRSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTS 240 (331)
Q Consensus 161 da~~av~~a~~~~~~~~~~~~~~~~~~~~~~Ip~~~~l~~~i~~~~~~~~~~~v~~iE~V~v~v~i~h~~~GdL~I~L~S 240 (331)
|+.+.|.+|+.|..++.|..+........+ ++++.|. ++++|||++++.|.|+.||+|+|+|.|
T Consensus 318 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~-----------~~~~~c~-----~~~lehv~~~~~i~~~~rg~l~~~l~s 381 (431)
T KOG3525|consen 318 DAKALVSCAKTWTTVPCQHCCPKDSLLRDR-----------SDTDECK-----VKYLEHVQVRVTITHPRRGDLQLYLFS 381 (431)
T ss_pred CcchhhhhhccCccCCcccccCcchhhccc-----------cccccee-----eeeeeeEEEEEEeecccccceEEeeec
Confidence 999999999999999998766443322221 2333332 778999999999999999999999999
Q ss_pred CCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEcc
Q psy13851 241 PMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYI 289 (331)
Q Consensus 241 PsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~~ 289 (331)
|+||.|.|+.+|+.|. +.+ |.+|+||++++|||++.|+|+|.|.|..
T Consensus 382 p~g~~s~l~~~r~~d~-~~~-f~dw~f~~v~~w~e~~~g~~~l~~~~~~ 428 (431)
T KOG3525|consen 382 PSGTKSRLLAPRPRDH-SYE-FTDWNFMTVHCWGENAEGTWKLEVQDVE 428 (431)
T ss_pred CCceeecccccChhhh-ccc-ccCCcceeeeecccCcceeEEEEEeccc
Confidence 9999999999999885 456 9999999999999999999999999864
No 3
>PF01483 P_proprotein: Proprotein convertase P-domain; InterPro: IPR002884 This domain, termed the P domain is approximately 150 amino acids in length and C-terminal to a serine endopeptidase domain which belong to MEROPS peptidase family S8 (clan SB), subfamily S8B (kexin). The domain is primarily associated with the calcium-dependent serine endopeptidases, kex2/subtilisin proprotein convertases (PCs), which have been identified in all eukaryotes [] and in the gammaproteobacteria, Nostoc (cyanobacteria) and in Streptomyces avermitilis. The P domain appears necessary for folding and maintaining the endopeptidase catalytic domain and to regulate its calcium and acidic pH dependence. In addition, contained within the middle of the P domain in most PC family members is the cognate integrin binding RGD sequence [], which may be required for intracellular compartmentalization and maintenance of enzyme stability within the ER. The integrity of the RGD sequence of proprotein convertase PC1 is critical for its zymogen and C-terminal processing and for its cellular trafficking [, ]. The carboxy-terminal tail provides uniqueness to each PC family member being the least conserved region of all convertases [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1P8J_E 1OT5_B 2ID4_A 1R64_A 3HJR_A.
Probab=99.90 E-value=6.7e-24 Score=167.94 Aligned_cols=86 Identities=36% Similarity=0.663 Sum_probs=70.7
Q ss_pred eeeEEEEEEEeeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEE-cccCCCCc
Q psy13851 217 VEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSP-YILAGLPM 295 (331)
Q Consensus 217 iE~V~v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D-~~~~~~~~ 295 (331)
||+|+|.|+|+|+++|||.|+|+||+||++.|+..++.|. ...++..|+|++++|+||+++|+|+|+|.| ...++
T Consensus 1 vE~v~v~v~i~H~~~gdL~i~L~SP~Gt~~~L~~~~~~d~-~~~~~~~~~f~~~~f~Ge~~~G~W~L~v~D~~~~~~--- 76 (87)
T PF01483_consen 1 VEHVQVSVDITHPYRGDLRITLISPSGTRSTLKDRRGSDD-SGSGFLNWTFTSVAFWGESANGTWTLRVTDRNSPGD--- 76 (87)
T ss_dssp EEEEEEEEEEEESSGGGEEEEEE-TT--EEEEE-SSTTHH-HSTSEEEEEEEESTTTT-B--EEEEEEEEEBSSTTS---
T ss_pred CcEEEEEEEEEcCCcCCEEEEEECCCCCEEEEECCcCCCc-ccccccccEEEEEeecCccCCCEEEEEEEECCCCCC---
Confidence 6999999999999999999999999999999999887642 346667899999999999999999999999 77777
Q ss_pred ccccEEEEEEEEEe
Q psy13851 296 LFIINLTITWALTA 309 (331)
Q Consensus 296 ~~~tG~L~~W~L~~ 309 (331)
+|+|++|+|+|
T Consensus 77 ---~G~l~~w~L~~ 87 (87)
T PF01483_consen 77 ---TGTLNSWSLTF 87 (87)
T ss_dssp ----EEEEEEEEEE
T ss_pred ---cEEEEEEEEEC
Confidence 99999999986
No 4
>COG4935 Regulatory P domain of the subtilisin-like proprotein convertases and other proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.6e-20 Score=163.01 Aligned_cols=119 Identities=20% Similarity=0.364 Sum_probs=91.3
Q ss_pred ceeeeeeeCCCCeEEEEEEeecccCCCCccceeeeEEEEEEEeeccccceEEEEeCCCCCeeEEcc---cccCCCcCCCC
Q psy13851 185 SVKQVTEIPSSRSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTSPMGTRSMILS---KRINDNDRRDG 261 (331)
Q Consensus 185 ~~~~~~~Ip~~~~l~~~i~~~~~~~~~~~v~~iE~V~v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~---~r~~d~~~~~g 261 (331)
+.+.+..+|+.....+..++.-. +-.+|.+|+|+|+|+|++||||+|.|+||+|.. .|++ .|+.| +...+
T Consensus 10 ~~~~~~~~pd~~~~~~~~~~~v~-----~~~~ik~v~V~VdI~H~yrGDL~I~L~sP~g~~-Il~~~~~~~~~D-~~~q~ 82 (177)
T COG4935 10 FTNLNLTLPDNDLQTISSSFSVA-----DANFIKDVTVRVDITHEYRGDLRITLISPSGQG-ILSNLTLGRRYD-DDSQG 82 (177)
T ss_pred eeccccccCCCcccccEEEEEec-----CCCceeeEEEEEeccccccccEEEEEeCCCCcc-eEEeeccCCccc-cccce
Confidence 34556778876543333332211 234677999999999999999999999999843 3333 23333 35678
Q ss_pred ccccceeeccccCCCCCceEEEEEEEcccCCCCcccccEEEEEEEEEeeeecCCC
Q psy13851 262 FTKWPFMTTHTWGEYPQGTWLLEVSPYILAGLPMLFIINLTITWALTARRVLLRD 316 (331)
Q Consensus 262 ~~~~~f~s~~f~GE~~~GtWtL~V~D~~~~~~~~~~~tG~L~~W~L~~~g~~~~~ 316 (331)
|..|.||++++|||.+.|+|+|+|.|...++ +|+|++|+|.+.|...-+
T Consensus 83 ~~~~s~~l~~~~ge~~~G~W~L~V~D~~~g~------~Gtf~sW~l~l~~~~~~~ 131 (177)
T COG4935 83 YNDQSFMLVQLWGERAEGNWRLEVQDLAGGH------TGTFHSWGLKLGGESTCI 131 (177)
T ss_pred eeeeeeeeeeeccCCCCceEEEEEEecCCCc------eeEEEEeEEeeeeecccc
Confidence 8899999999999999999999999999998 999999999999866433
No 5
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=99.68 E-value=1.1e-16 Score=151.36 Aligned_cols=91 Identities=54% Similarity=0.816 Sum_probs=82.7
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCC--CCeEeecCCCCcchhhhhhHHHhhhhhCCCCC
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLY--GKCTTTHSGTSAAAPEAAGVFALALEANPQLT 79 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~--g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt 79 (331)
++|+|+|++.+|++++||+.|+.+.+++|+++...+...|++++.. +.++..++|||||||+|||++||++|++|+|+
T Consensus 205 ~vi~Vga~~~~g~~~~~s~~g~~~~~~a~g~~~~~~~~~i~~~~~~~~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt 284 (297)
T cd04059 205 YTISVSAVTANGVRASYSEVGSSVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTSAAAPLAAGVIALMLEANPNLT 284 (297)
T ss_pred ceEEEEeeCCCCCCcCCCCCCCcEEEEecCCCCCCCCCceEeCCCCCCCCcccccCCcchhhhhhHhHHHHhhccCCCCC
Confidence 6899999999999999999999999999987654456779999887 46777899999999999999999999999999
Q ss_pred HHHHHHHHHhhcc
Q psy13851 80 WRDIQHLTVLTSK 92 (331)
Q Consensus 80 ~~~v~~~L~~tA~ 92 (331)
++||+++|..||+
T Consensus 285 ~~~v~~~L~~TA~ 297 (297)
T cd04059 285 WRDVQHILALTAR 297 (297)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999985
No 6
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=99.66 E-value=2.3e-16 Score=149.82 Aligned_cols=91 Identities=31% Similarity=0.306 Sum_probs=64.4
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCC---------C-----CCCC-CCeEEeeCCCCeEeecCCCCcchhhhhh
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNG---------A-----KDPN-TGVATTDLYGKCTTTHSGTSAAAPEAAG 66 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g---------~-----~~p~-~~I~tt~~~g~~~~~~~GTS~Aap~vAG 66 (331)
.+|+|+|++.++++.+||+.+.......+++. . ..|+ ..+.++.. ++.+..++|||||||+|||
T Consensus 147 ~vitVgA~~~~~~~~~~s~~~~~~~~s~~~~~~~~~p~~~~~~~~di~Apgg~~~~~~~~-~~~~~~~sGTS~AaP~VaG 225 (275)
T cd05562 147 GAIAVGAVDYGNTPAFGSDPAPGGTPSSFDPVGIRLPTPEVRQKPDVTAPDGVNGTVDGD-GDGPPNFFGTSAAAPHAAG 225 (275)
T ss_pred CeEEEEeeccCCCcccccccccCCCcccccCCcccCcCCCCCcCCeEEcCCcccccCCCc-CCceeecccchHHHHHHHH
Confidence 48999999999998877754322111111110 0 0122 12233333 3345678999999999999
Q ss_pred HHHhhhhhCCCCCHHHHHHHHHhhccc
Q psy13851 67 VFALALEANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 67 ~~AL~l~~~P~lt~~~v~~~L~~tA~~ 93 (331)
++|||++++|+|++.+|+++|+.+|++
T Consensus 226 ~aALl~~~~p~lt~~~v~~~L~~tA~~ 252 (275)
T cd05562 226 VAALVLSANPGLTPADIRDALRSTALD 252 (275)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHhCcc
Confidence 999999999999999999999999985
No 7
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.59 E-value=2.1e-15 Score=144.41 Aligned_cols=95 Identities=23% Similarity=0.192 Sum_probs=73.9
Q ss_pred CCCCeEEeeCCCC-eEeecCCCCcchhhhhhHHHhhhhhC-CCCCHHHHHHHHHhhcccCcccccCCCCcceeecCCCCc
Q psy13851 37 PNTGVATTDLYGK-CTTTHSGTSAAAPEAAGVFALALEAN-PQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSK 114 (331)
Q Consensus 37 p~~~I~tt~~~g~-~~~~~~GTS~Aap~vAG~~AL~l~~~-P~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~~~~~~~~ 114 (331)
||..|+++.+.+. .+..++|||+|||+|||++||+++++ |.+++++|+++|..+|+...
T Consensus 209 pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~------------------- 269 (312)
T cd07489 209 PGGNILSTYPLAGGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLP------------------- 269 (312)
T ss_pred CCCCEEEeeeCCCCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcccc-------------------
Confidence 5777887766543 34678999999999999999999999 99999999999999998521
Q ss_pred cccccccceeeeeccccccccccCCCCceecccCccccccccccccChHHHHHHhhcccc
Q psy13851 115 LTWRDIQHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKT 174 (331)
Q Consensus 115 ~~~~~~~~~~~~ts~~~~~~~~~~~~~W~~n~~G~~~s~~~GfG~vda~~av~~a~~~~~ 174 (331)
..+ ..+..+. +.+++.||||++|+.+||+.+.++.+
T Consensus 270 ------------------~~~----~~~~~~~--~~~~~~~G~G~vn~~~a~~~~~~~~~ 305 (312)
T cd07489 270 ------------------WSD----GTSALPD--LAPVAQQGAGLVNAYKALYATTTLSP 305 (312)
T ss_pred ------------------ccC----CCccccC--CCCHhhcCcceeeHHHHhcCCccccc
Confidence 001 1111111 56788999999999999999877643
No 8
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.57 E-value=4.2e-15 Score=138.00 Aligned_cols=83 Identities=24% Similarity=0.159 Sum_probs=75.3
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWR 81 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~ 81 (331)
.+|+|++++.+|+...||++|+.+.+.+| |.+|+++...+.+ ..++|||||||+|||++||+++++| |++.
T Consensus 144 ~vi~V~a~~~~~~~~~~s~~g~~~di~Ap-------G~~i~~~~~~~~~-~~~sGTS~AaP~vaG~aAll~~~~p-~~~~ 214 (239)
T cd05561 144 GVIAVTAVDARGRLYREANRGAHVDFAAP-------GVDVWVAAPGGGY-RYVSGTSFAAPFVTAALALLLQASP-LAPD 214 (239)
T ss_pred CceEEEeecCCCCccccCCCCCcceEEcc-------ccceecccCCCCE-EEeCCHHHHHHHHHHHHHHHHhcCC-CCHH
Confidence 47999999999999999999999988885 6788888776665 5689999999999999999999999 9999
Q ss_pred HHHHHHHhhccc
Q psy13851 82 DIQHLTVLTSKR 93 (331)
Q Consensus 82 ~v~~~L~~tA~~ 93 (331)
||+++|..||++
T Consensus 215 ~i~~~L~~ta~~ 226 (239)
T cd05561 215 DARARLAATAKD 226 (239)
T ss_pred HHHHHHHHHhhc
Confidence 999999999985
No 9
>PTZ00262 subtilisin-like protease; Provisional
Probab=99.55 E-value=1.9e-14 Score=149.30 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=67.1
Q ss_pred EEEEEeeeCCCCC----ccCCCCC-CccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCC
Q psy13851 3 TISINSAINDGQN----AHYDESC-SSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQ 77 (331)
Q Consensus 3 tisVga~~~~G~~----a~YS~~g-~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~ 77 (331)
+|+|||++.+... +.+|+++ ..+.++| ||.+|+++.+.+.| ..++|||||||+|||++|||++++|+
T Consensus 505 VIaVGAv~~d~~~~~s~s~~Snyg~~~VDIaA-------PG~dI~St~p~g~Y-~~~SGTSmAAP~VAGvAALLlS~~P~ 576 (639)
T PTZ00262 505 VITVSNLIKDKNNQYSLSPNSFYSAKYCQLAA-------PGTNIYSTFPKNSY-RKLNGTSMAAPHVAAIASLILSINPS 576 (639)
T ss_pred EEEEeeccCCCCCcccccccccCCCCcceEEe-------CCCCeeeccCCCce-eecCCCchhHHHHHHHHHHHHhhCCC
Confidence 7999999874321 2233444 3456666 57899999887664 67999999999999999999999999
Q ss_pred CCHHHHHHHHHhhccc
Q psy13851 78 LTWRDIQHLTVLTSKR 93 (331)
Q Consensus 78 lt~~~v~~~L~~tA~~ 93 (331)
|+++||+++|+.+|.+
T Consensus 577 LT~~qV~~iL~~TA~~ 592 (639)
T PTZ00262 577 LSYEEVIRILKESIVQ 592 (639)
T ss_pred CCHHHHHHHHHHhCcc
Confidence 9999999999999975
No 10
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=99.54 E-value=1.2e-14 Score=135.50 Aligned_cols=84 Identities=30% Similarity=0.315 Sum_probs=72.0
Q ss_pred EEEEEeeeCCCCCccCCCCCCcc-------EEEeecCCCCCCCCCeEEeeCCC--CeEeecCCCCcchhhhhhHHHhhhh
Q psy13851 3 TISINSAINDGQNAHYDESCSST-------LASTFSNGAKDPNTGVATTDLYG--KCTTTHSGTSAAAPEAAGVFALALE 73 (331)
Q Consensus 3 tisVga~~~~G~~a~YS~~g~~v-------~~~a~s~g~~~p~~~I~tt~~~g--~~~~~~~GTS~Aap~vAG~~AL~l~ 73 (331)
+|+|++++.+++++.||++|... .+++| |..|.++.... .++..++|||+|||+|||++||+++
T Consensus 165 vi~Vg~~~~~~~~~~~s~~g~~~~~~~~~~di~a~-------G~~i~~~~~~~~~~~~~~~~GTS~Aap~vag~~All~~ 237 (282)
T PF00082_consen 165 VITVGAVDNNGQPASYSNYGGPSDDGRIKPDIAAP-------GGNILSAVPGSDRGSYTSFSGTSFAAPVVAGAAALLLS 237 (282)
T ss_dssp SEEEEEEETTSSBSTTSSBSTTETTCTTCEEEEEE-------CSSEEEEETTTESEEEEEEESHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccCcCCchHHHHHHHHHHHHH
Confidence 69999999999999999998765 77775 45676555443 3456789999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhhccc
Q psy13851 74 ANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 74 ~~P~lt~~~v~~~L~~tA~~ 93 (331)
++|++++++|+++|..+|++
T Consensus 238 ~~p~~~~~~i~~~l~~ta~~ 257 (282)
T PF00082_consen 238 KYPNLTPAEIKALLINTADD 257 (282)
T ss_dssp HSTTSHHHHHHHHHHHHSBE
T ss_pred HCCCCCHHHHHHHHHHhCcc
Confidence 99999999999999999985
No 11
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=99.52 E-value=2.7e-14 Score=133.75 Aligned_cols=83 Identities=27% Similarity=0.272 Sum_probs=74.4
Q ss_pred EEEEEEeeeCCCCCccCCCCCCcc------EEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhC
Q psy13851 2 WTISINSAINDGQNAHYDESCSST------LASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEAN 75 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~ 75 (331)
.+|+|+|++.+|.+..||++|+.. .+++ ||..|.++...+ ++..++|||||||+|||++|||+|++
T Consensus 174 ~vi~Vga~~~~~~~~~~S~~g~~~~~~~~~dv~A-------pG~~i~s~~~~~-~~~~~~GTS~AaP~vaG~aAll~~~~ 245 (264)
T cd07481 174 ESFAVGATDRNDVLADFSSRGPSTYGRIKPDISA-------PGVNIRSAVPGG-GYGSSSGTSMAAPHVAGVAALLWSAN 245 (264)
T ss_pred ceEEEEecCCCCCCccccCCCCCCCCCcCceEEE-------CCCCeEEecCCC-ceEeeCcHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999987 5666 467888887765 45678999999999999999999999
Q ss_pred CC--CCHHHHHHHHHhhcc
Q psy13851 76 PQ--LTWRDIQHLTVLTSK 92 (331)
Q Consensus 76 P~--lt~~~v~~~L~~tA~ 92 (331)
|+ |+++||+++|++||+
T Consensus 246 p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 246 PSLIGDVDATEAILTETAR 264 (264)
T ss_pred CCCCCCHHHHHHHHHHhcC
Confidence 99 999999999999985
No 12
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=99.51 E-value=3.3e-14 Score=132.10 Aligned_cols=85 Identities=22% Similarity=0.235 Sum_probs=75.9
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCC-CCeEeecCCCCcchhhhhhHHHhhhhhCCCCCH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTW 80 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~-g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~ 80 (331)
.+|+|+|++.++.+..||++|+.+.+.+| |..|.++... +..+..++|||||||+|||++|||++++|++++
T Consensus 170 ~vi~Vga~~~~~~~~~~S~~g~~~~i~ap-------G~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~ 242 (255)
T cd04077 170 EAITVGATDSDDARASFSNYGSCVDIFAP-------GVDILSAWIGSDTATATLSGTSMAAPHVAGLAAYLLSLGPDLSP 242 (255)
T ss_pred ceEEEeccCCCCCccCcccCCCCCcEEeC-------CCCeEecccCCCCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 58999999999999999999999998885 5677777652 335677999999999999999999999999999
Q ss_pred HHHHHHHHhhccc
Q psy13851 81 RDIQHLTVLTSKR 93 (331)
Q Consensus 81 ~~v~~~L~~tA~~ 93 (331)
+||+++|+.||++
T Consensus 243 ~~v~~~L~~tA~~ 255 (255)
T cd04077 243 AEVKARLLNLATK 255 (255)
T ss_pred HHHHHHHHhhccC
Confidence 9999999999974
No 13
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.50 E-value=4.6e-14 Score=134.17 Aligned_cols=84 Identities=24% Similarity=0.222 Sum_probs=72.0
Q ss_pred EEEEEEeeeCC-CC-CccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCC---------eEeecCCCCcchhhhhhHHHh
Q psy13851 2 WTISINSAIND-GQ-NAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGK---------CTTTHSGTSAAAPEAAGVFAL 70 (331)
Q Consensus 2 ~tisVga~~~~-G~-~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~---------~~~~~~GTS~Aap~vAG~~AL 70 (331)
++|+|+|++.+ +. ++.||++|+.+++.+| |.+|+++...+. |+..++|||||||+|||++||
T Consensus 178 ~vI~VgA~~~~~~~~~~~fSn~G~~vdi~AP-------G~~i~s~~~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAL 250 (277)
T cd04843 178 GAIMVGAGSSTTGHTRLAFSNYGSRVDVYGW-------GENVTTTGYGDLQDLGGENQDYTDSFSGTSSASPIVAGAAAS 250 (277)
T ss_pred CeEEEEeccCCCCCccccccCCCCccceEcC-------CCCeEecCCCCcccccCCCCcceeeecccchhhHHHHHHHHH
Confidence 48999999986 44 8999999999998885 678998876533 456789999999999999999
Q ss_pred hhh----h-CCCCCHHHHHHHHHhhcc
Q psy13851 71 ALE----A-NPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 71 ~l~----~-~P~lt~~~v~~~L~~tA~ 92 (331)
|++ + +|+|+++||+++|.+|++
T Consensus 251 l~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 251 IQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 975 3 599999999999999874
No 14
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=99.50 E-value=3.7e-14 Score=132.98 Aligned_cols=90 Identities=24% Similarity=0.282 Sum_probs=76.0
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCC------CCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhC
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGA------KDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEAN 75 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~------~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~ 75 (331)
.+|+|+|++.+++++.||++|...+.. |++.+ .+||.+|.++...+.| ..++|||||||+|||++|||++++
T Consensus 153 ~vi~Vga~~~~~~~~~~S~~g~~~~~~-p~~~g~~~~di~apG~~i~~~~~~~~~-~~~sGTS~AaP~VaG~aAll~s~~ 230 (255)
T cd07479 153 DVIGVGGIDFDDNIARFSSRGMTTWEL-PGGYGRVKPDIVTYGSGVYGSKLKGGC-RALSGTSVASPVVAGAVALLLSTV 230 (255)
T ss_pred CceEEeeeccCCccccccCCCCCcccc-cCCCCCcCccEEecCCCeeccccCCCe-EEeccHHHHHHHHHHHHHHHHHhC
Confidence 589999999999999999999765432 33311 1368889888877766 468999999999999999999999
Q ss_pred C----CCCHHHHHHHHHhhccc
Q psy13851 76 P----QLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 76 P----~lt~~~v~~~L~~tA~~ 93 (331)
| .|++.+|+++|..+|++
T Consensus 231 p~~~~~~~p~~vk~~L~~sA~~ 252 (255)
T cd07479 231 PEKRDLINPASMKQALIESATR 252 (255)
T ss_pred ccccCCCCHHHHHHHHHhhccc
Confidence 9 79999999999999986
No 15
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.48 E-value=4.8e-14 Score=133.19 Aligned_cols=57 Identities=33% Similarity=0.364 Sum_probs=50.0
Q ss_pred CCCCeEEeeCC-CCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHHHHhhccc
Q psy13851 37 PNTGVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 37 p~~~I~tt~~~-g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~L~~tA~~ 93 (331)
||..|.++... +..+..++|||||||+|||++|||++++|+|++++|+++|..||++
T Consensus 214 pG~~i~~~~~~~~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~ 271 (295)
T cd07474 214 PGVDIMSTAPGSGTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKP 271 (295)
T ss_pred CcCceEeeccCCCCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcc
Confidence 57778877655 2345678999999999999999999999999999999999999986
No 16
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=99.48 E-value=7.8e-14 Score=133.02 Aligned_cols=82 Identities=22% Similarity=0.253 Sum_probs=71.2
Q ss_pred EEEEEeeeCCCC---CccCCCCCC-ccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCC
Q psy13851 3 TISINSAINDGQ---NAHYDESCS-STLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQL 78 (331)
Q Consensus 3 tisVga~~~~G~---~a~YS~~g~-~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~l 78 (331)
+|+|+|++..+. .+.||++|. .+.+.+| |..|.++.+.+.+ ..++|||||||+|||++||+++++|+|
T Consensus 206 vi~Vga~~~~~~~~~~~~~Sn~G~~~vdi~AP-------G~~i~s~~~~~~~-~~~sGTS~AaP~vaG~aAl~~s~~p~l 277 (291)
T cd07483 206 FITVGASSKKYENNLVANFSNYGKKNVDVFAP-------GERIYSTTPDNEY-ETDSGTSMAAPVVSGVAALIWSYYPNL 277 (291)
T ss_pred eeEEeeccccCCcccccccCCCCCCceEEEeC-------CCCeEeccCcCCe-EeeccHHHHHHHHHHHHHHHHHHCCCC
Confidence 689999988764 688999997 5677774 7789998776654 568999999999999999999999999
Q ss_pred CHHHHHHHHHhhcc
Q psy13851 79 TWRDIQHLTVLTSK 92 (331)
Q Consensus 79 t~~~v~~~L~~tA~ 92 (331)
+++||+++|..||+
T Consensus 278 t~~~v~~~L~~ta~ 291 (291)
T cd07483 278 TAKEVKQIILESGV 291 (291)
T ss_pred CHHHHHHHHHHhCC
Confidence 99999999999984
No 17
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.47 E-value=7.3e-14 Score=128.48 Aligned_cols=82 Identities=33% Similarity=0.341 Sum_probs=69.9
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEe--------eCCCCeEeecCCCCcchhhhhhHHHhhhh
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATT--------DLYGKCTTTHSGTSAAAPEAAGVFALALE 73 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt--------~~~g~~~~~~~GTS~Aap~vAG~~AL~l~ 73 (331)
.+|+|+|++..|+++.||++|+.+.+++|+.+ +.+. +..++++..++|||||||+|||++|||++
T Consensus 153 ~vi~Vga~~~~~~~~~~s~~g~~~~~~apG~~-------~~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~All~~ 225 (242)
T cd07498 153 SVIAVAATDSNDARASYSNYGNYVDLVAPGVG-------IWTTGTGRGSAGDYPGGGYGSFSGTSFASPVAAGVAALILS 225 (242)
T ss_pred CeEEEEEeCCCCCccCcCCCCCCeEEEeCcCC-------cccCCccccccccCCCCceEeeCcHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999997543 2222 12244567789999999999999999999
Q ss_pred hCCCCCHHHHHHHHHhh
Q psy13851 74 ANPQLTWRDIQHLTVLT 90 (331)
Q Consensus 74 ~~P~lt~~~v~~~L~~t 90 (331)
++|+|+++||+++|++|
T Consensus 226 ~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 226 ANPNLTPAEVEDILTST 242 (242)
T ss_pred hCCCCCHHHHHHHHHhC
Confidence 99999999999999864
No 18
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=99.46 E-value=1.2e-13 Score=133.72 Aligned_cols=80 Identities=25% Similarity=0.258 Sum_probs=64.5
Q ss_pred EEEEEEeee------CCCCCccCCCCCCcc------EEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHH
Q psy13851 2 WTISINSAI------NDGQNAHYDESCSST------LASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFA 69 (331)
Q Consensus 2 ~tisVga~~------~~G~~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~A 69 (331)
.+|+|++++ ..+....||++|+.. .+++ ||..|+++...+. +..++|||||||+|||++|
T Consensus 215 ~~i~Vga~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdi~a-------pG~~i~s~~~~~~-~~~~~GTS~AaP~VaG~aA 286 (346)
T cd07475 215 DVLTVASANKKVPNPNGGQMSGFSSWGPTPDLDLKPDITA-------PGGNIYSTVNDNT-YGYMSGTSMASPHVAGASA 286 (346)
T ss_pred CceEEeecccccCCCCCCccCCCcCCCCCcccCcCCeEEe-------CCCCeEEecCCCc-eEeeCcHHHHHHHHHHHHH
Confidence 479999998 678889999999865 3445 4678888876654 4678999999999999999
Q ss_pred hhhhh----CCCCCHHHHHHHHHh
Q psy13851 70 LALEA----NPQLTWRDIQHLTVL 89 (331)
Q Consensus 70 L~l~~----~P~lt~~~v~~~L~~ 89 (331)
||+|+ +|.|++.+++++|+.
T Consensus 287 Ll~~~~~~~~p~l~~~~~~~~ik~ 310 (346)
T cd07475 287 LVKQRLKEKYPKLSGEELVDLVKN 310 (346)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHH
Confidence 99997 899999885554443
No 19
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.46 E-value=1.2e-13 Score=128.98 Aligned_cols=83 Identities=22% Similarity=0.270 Sum_probs=71.2
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccE------EEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhC
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTL------ASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEAN 75 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~------~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~ 75 (331)
++|+|+|++.+++++.||++|+... +++ ||..|++....+. +..++|||||||+|||++|||++++
T Consensus 173 ~vi~Vga~~~~~~~~~~S~~G~~~~~~~~pdi~a-------~G~~~~~~~~~~~-~~~~sGTS~AaP~vaG~aAll~~~~ 244 (261)
T cd07493 173 NVLSVGAVDANGNKASFSSIGPTADGRLKPDVMA-------LGTGIYVINGDGN-ITYANGTSFSCPLIAGLIACLWQAH 244 (261)
T ss_pred ceEEEEEeccCCCCCccCCcCCCCCCCcCCceEe-------cCCCeEEEcCCCc-EEeeCcHHHHHHHHHHHHHHHHHHC
Confidence 5899999999999999999998642 333 5667777655554 4678999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcc
Q psy13851 76 PQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 76 P~lt~~~v~~~L~~tA~ 92 (331)
|+|+++||+++|++||+
T Consensus 245 p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 245 PNWTNLQIKEAILKSAS 261 (261)
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 99999999999999984
No 20
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=99.42 E-value=3.2e-13 Score=125.69 Aligned_cols=83 Identities=25% Similarity=0.267 Sum_probs=74.9
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWR 81 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~ 81 (331)
++|+|++++.+|+++.||++|..+...+| |..|+++...+ ++..++|||||||+|||++||+++++| |+++
T Consensus 176 ~vi~Vga~~~~~~~~~~s~~g~~~~~~ap-------G~~i~~~~~~~-~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~ 246 (260)
T cd07484 176 GAIAVAATDQDDKRASFSNYGKWVDVSAP-------GGGILSTTPDG-DYAYMSGTSMATPHVAGVAALLYSQGP-LSAS 246 (260)
T ss_pred CeEEEEeeCCCCCcCCcCCCCCCceEEeC-------CCCcEeecCCC-CEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHH
Confidence 58999999999999999999999988885 55777776655 456789999999999999999999999 9999
Q ss_pred HHHHHHHhhccc
Q psy13851 82 DIQHLTVLTSKR 93 (331)
Q Consensus 82 ~v~~~L~~tA~~ 93 (331)
||+.+|..+|++
T Consensus 247 ~i~~~L~~tA~~ 258 (260)
T cd07484 247 EVRDALKKTADD 258 (260)
T ss_pred HHHHHHHHhCcc
Confidence 999999999986
No 21
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=99.40 E-value=4.4e-13 Score=126.15 Aligned_cols=83 Identities=25% Similarity=0.225 Sum_probs=71.2
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCC-----CCeEeecCCCCcchhhhhhHHHhhhhhCC
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLY-----GKCTTTHSGTSAAAPEAAGVFALALEANP 76 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~-----g~~~~~~~GTS~Aap~vAG~~AL~l~~~P 76 (331)
.+|+|++++.+|.++.||++|+.+.+.+|+.+ .|+++.+. ..++..++|||||||+|||++||+++++|
T Consensus 185 ~vi~V~a~~~~~~~~~~S~~g~~~~i~apG~~------~i~~~~~~~~~~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~ 258 (273)
T cd07485 185 GVIAVAALDTNDNKASFSNYGRWVDIAAPGVG------TILSTVPKLDGDGGGNYEYLSGTSMAAPHVSGVAALVLSKFP 258 (273)
T ss_pred CeEEEEeccCCCCcCccccCCCceEEEeCCCC------ccccccccccCCCCCCeEeeccHHHHHHHHHHHHHHHHHhCC
Confidence 58999999999999999999999999987431 45555443 23567789999999999999999999999
Q ss_pred C-CCHHHHHHHHHhh
Q psy13851 77 Q-LTWRDIQHLTVLT 90 (331)
Q Consensus 77 ~-lt~~~v~~~L~~t 90 (331)
+ |+++||+++|+.|
T Consensus 259 ~~~~~~~i~~~L~~T 273 (273)
T cd07485 259 DVFTPEQIRKLLEES 273 (273)
T ss_pred CCCCHHHHHHHHHhC
Confidence 9 9999999999865
No 22
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=99.40 E-value=6.7e-13 Score=120.61 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=72.6
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWR 81 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~ 81 (331)
.+|+|++++.+|++..||++|..+.+.+| |.+|.++...+.+ ..++|||+|||+|||++|||+|++|+|+++
T Consensus 149 ~vi~Vga~~~~~~~~~~s~~g~~~~~~ap-------g~~i~~~~~~~~~-~~~~GTS~Aap~vag~~All~~~~~~~~~~ 220 (229)
T cd07477 149 SVIAVGAVDSNNNRASFSSTGPEVELAAP-------GVDILSTYPNNDY-AYLSGTSMATPHVAGVAALVWSKRPELTNA 220 (229)
T ss_pred CEEEEEeecCCCCcCCccCCCCCceEEeC-------CCCeEEecCCCCE-EEEccHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 47999999999999999999999988885 5678888766554 568999999999999999999999999999
Q ss_pred HHHHHHHhh
Q psy13851 82 DIQHLTVLT 90 (331)
Q Consensus 82 ~v~~~L~~t 90 (331)
+|+.+|+.|
T Consensus 221 ~i~~~l~~t 229 (229)
T cd07477 221 QVRQALNKT 229 (229)
T ss_pred HHHHHHHhC
Confidence 999999764
No 23
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.40 E-value=3.5e-13 Score=127.51 Aligned_cols=82 Identities=32% Similarity=0.266 Sum_probs=69.0
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeC--------------CCCeEeecCCCCcchhhhhhH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDL--------------YGKCTTTHSGTSAAAPEAAGV 67 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~--------------~g~~~~~~~GTS~Aap~vAG~ 67 (331)
.+|+|+|++.+|.++.||++|+.+.+.+|+. .|.++.. ....+..++|||||||+|||+
T Consensus 190 ~vi~Vga~~~~~~~~~~S~~g~~vdi~apG~-------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~ 262 (285)
T cd07496 190 GVIAVGATDLRGQRASYSNYGPAVDVSAPGG-------DCASDVNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGV 262 (285)
T ss_pred ceEEEeccCCCCCcccccCCCCCCCEEeCCC-------CccccCCCCccccccccccCCCCCceEeeCcHHHHHHHHHHH
Confidence 5899999999999999999999999999754 2322211 123456789999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHhh
Q psy13851 68 FALALEANPQLTWRDIQHLTVLT 90 (331)
Q Consensus 68 ~AL~l~~~P~lt~~~v~~~L~~t 90 (331)
+||+++++|+|+++||+++|+.|
T Consensus 263 aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 263 AALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred HHHHHHhCCCCCHHHHHHHHHhC
Confidence 99999999999999999999764
No 24
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=99.39 E-value=6.3e-13 Score=125.66 Aligned_cols=85 Identities=20% Similarity=0.188 Sum_probs=74.4
Q ss_pred EEEEEEeeeCCCCCccCCCCCCcc---EEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCC-
Q psy13851 2 WTISINSAINDGQNAHYDESCSST---LASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQ- 77 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v---~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~- 77 (331)
++|+|+|++.+|.+..||++|+.. .+++ ||.+|+++.+.+.+ ..++|||||||+|||++|||++.+|.
T Consensus 161 ~vi~Vga~~~~~~~~~~s~~g~~~~~~~l~A-------pG~~i~~~~~~~~~-~~~sGTS~AaP~vaG~aALl~s~~~~~ 232 (267)
T cd07476 161 SVLAVGAMDDDGLPLKFSNWGADYRKKGILA-------PGENILGAALGGEV-VRRSGTSFAAAIVAGIAALLLSLQLRR 232 (267)
T ss_pred ceEEEEeecCCCCeeeecCCCCCCCCceEEe-------cCCCceeecCCCCe-EEeccHHHHHHHHHHHHHHHHHhhhhh
Confidence 589999999999999999999764 4555 47788888776654 56899999999999999999999887
Q ss_pred ---CCHHHHHHHHHhhcccC
Q psy13851 78 ---LTWRDIQHLTVLTSKRN 94 (331)
Q Consensus 78 ---lt~~~v~~~L~~tA~~~ 94 (331)
+++++|+++|..||++.
T Consensus 233 ~~~~~~~~vk~~L~~tA~~~ 252 (267)
T cd07476 233 GAPPDPLAVRRALLETATPC 252 (267)
T ss_pred CCCCCHHHHHHHHHHhCccC
Confidence 99999999999999973
No 25
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.37 E-value=1e-12 Score=121.65 Aligned_cols=84 Identities=24% Similarity=0.310 Sum_probs=70.2
Q ss_pred EEEEEEeeeCCCC----CccCCCCCCcc------EEEeecCCCCCCCCCeEEe--------eCCCCeEeecCCCCcchhh
Q psy13851 2 WTISINSAINDGQ----NAHYDESCSST------LASTFSNGAKDPNTGVATT--------DLYGKCTTTHSGTSAAAPE 63 (331)
Q Consensus 2 ~tisVga~~~~G~----~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt--------~~~g~~~~~~~GTS~Aap~ 63 (331)
++|+|+|++.++. .++||+.|+.. .+++ ||..|.+. ...++.+..++|||+|||+
T Consensus 163 ~vi~Vga~~~~~~~~~~~~~~s~~G~~~~~~~~~di~a-------pG~~i~~~~~~~~~~~~~~~~~~~~~~GTS~Aap~ 235 (264)
T cd07487 163 KVITVGAVDDNGPHDDGISYFSSRGPTGDGRIKPDVVA-------PGENIVSCRSPGGNPGAGVGSGYFEMSGTSMATPH 235 (264)
T ss_pred CceEEEeccCCCCCCccccccccCCCCCCCCcCCCEEc-------cccceEeccccccccCCCCCCceEeccccchHHHH
Confidence 6899999999998 79999999754 3444 46677774 2233456778999999999
Q ss_pred hhhHHHhhhhhCCCCCHHHHHHHHHhhcc
Q psy13851 64 AAGVFALALEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 64 vAG~~AL~l~~~P~lt~~~v~~~L~~tA~ 92 (331)
|||++|||++++|+|++++|+.+|+.||+
T Consensus 236 vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 236 VSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred HHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999985
No 26
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.35 E-value=1.3e-12 Score=120.87 Aligned_cols=90 Identities=29% Similarity=0.292 Sum_probs=70.6
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCC----------CCCCCCeEE----eeCCCCeEeecCCCCcchhhhhhH
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGA----------KDPNTGVAT----TDLYGKCTTTHSGTSAAAPEAAGV 67 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~----------~~p~~~I~t----t~~~g~~~~~~~GTS~Aap~vAG~ 67 (331)
.+|+|+|++.+|++.+|++.|.......+..+. ..||..|.+ ....+ .+..++|||||||+|||+
T Consensus 151 ~vi~Vga~~~~~~~~~~s~~g~~~~~~~~~~~~~~~~~~~~d~~apG~~i~~~~~~~~~~~-~~~~~~GTS~AaP~vaG~ 229 (254)
T cd07490 151 AALSVGAVDRDDEDAWFSSFGSSGASLVSAPDSPPDEYTKPDVAAPGVDVYSARQGANGDG-QYTRLSGTSMAAPHVAGV 229 (254)
T ss_pred ceeEEecccccCCccCccCCcccccccccCCCCCccCCcCceEEeccCCeEccccCCCCCC-CeeecccHHHHHHHHHHH
Confidence 579999999999999999988553322221111 135777777 33333 456789999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHhhcc
Q psy13851 68 FALALEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 68 ~AL~l~~~P~lt~~~v~~~L~~tA~ 92 (331)
+|||++++|+|+++||+++|+.||+
T Consensus 230 aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 230 AALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999999999999999884
No 27
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=99.35 E-value=1.4e-12 Score=120.15 Aligned_cols=84 Identities=27% Similarity=0.332 Sum_probs=70.7
Q ss_pred EEEEEEeeeCCCCCccC--CCCCCcc---EEEeecCCCCCCCCCeEEeeCC-CCeEeecCCCCcchhhhhhHHHhhhhhC
Q psy13851 2 WTISINSAINDGQNAHY--DESCSST---LASTFSNGAKDPNTGVATTDLY-GKCTTTHSGTSAAAPEAAGVFALALEAN 75 (331)
Q Consensus 2 ~tisVga~~~~G~~a~Y--S~~g~~v---~~~a~s~g~~~p~~~I~tt~~~-g~~~~~~~GTS~Aap~vAG~~AL~l~~~ 75 (331)
.+|+|+|++.++....| |++|... .+.+ ||..|.++... ...+..++|||+|||+|||++||++|++
T Consensus 178 ~vi~Vga~~~~~~~~~~~~s~~~~~~~~~~~~a-------pG~~i~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~ 250 (267)
T cd04848 178 GWIAVVAVDPNGTIASYSYSNRCGVAANWCLAA-------PGENIYSTDPDGGNGYGRVSGTSFAAPHVSGAAALLAQKF 250 (267)
T ss_pred CEEEEEEecCCCCcccccccccchhhhhheeec-------CcCceeecccCCCCcccccceeEchHHHHHHHHHHHHHHC
Confidence 37999999999999999 8888643 2333 57788888762 3345678999999999999999999999
Q ss_pred CCCCHHHHHHHHHhhcc
Q psy13851 76 PQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 76 P~lt~~~v~~~L~~tA~ 92 (331)
|.|+++||+.+|+.||+
T Consensus 251 p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 251 PWLTADQVRQTLLTTAT 267 (267)
T ss_pred CCCCHHHHHHHHHhhcC
Confidence 99999999999999985
No 28
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.35 E-value=2.2e-12 Score=119.66 Aligned_cols=83 Identities=27% Similarity=0.290 Sum_probs=72.0
Q ss_pred EEEEEEeeeCCCCCccCCCCCCc-cEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCH
Q psy13851 2 WTISINSAINDGQNAHYDESCSS-TLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTW 80 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~-v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~ 80 (331)
++|+|++++.+|.+..||++|+. +.+++ ||..++++...+ ++..++|||||||+|||++||++|++|.|++
T Consensus 176 ~vi~Vga~~~~~~~~~~s~~g~~~~~~~a-------pG~~~~~~~~~~-~~~~~~GTS~AaP~vaG~~All~~~~~~~t~ 247 (259)
T cd07473 176 NIISVAATDSNDALASFSNYGKKTVDLAA-------PGVDILSTSPGG-GYGYMSGTSMATPHVAGAAALLLSLNPNLTA 247 (259)
T ss_pred CeEEEEecCCCCCcCcccCCCCCCcEEEe-------ccCCeEeccCCC-cEEEeccHhHHHHHHHHHHHHHHHhCCCCCH
Confidence 48999999999999999999975 55665 466788766544 4567899999999999999999999999999
Q ss_pred HHHHHHHHhhcc
Q psy13851 81 RDIQHLTVLTSK 92 (331)
Q Consensus 81 ~~v~~~L~~tA~ 92 (331)
++|+++|..||+
T Consensus 248 ~~v~~~L~~tA~ 259 (259)
T cd07473 248 AQIKDAILSSAD 259 (259)
T ss_pred HHHHHHHHHhCC
Confidence 999999999884
No 29
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.33 E-value=3.3e-12 Score=116.28 Aligned_cols=88 Identities=22% Similarity=0.269 Sum_probs=63.2
Q ss_pred EEEEeeeCCCCCccCCCCCCccEEEeecCCC------------CCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhh
Q psy13851 4 ISINSAINDGQNAHYDESCSSTLASTFSNGA------------KDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALA 71 (331)
Q Consensus 4 isVga~~~~G~~a~YS~~g~~v~~~a~s~g~------------~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~ 71 (331)
|.|.|+.++|....|.....+++.+.-.... ..||.+|.++...+. +..++|||||||+|||++|||
T Consensus 123 l~V~aagN~~~~~~~Pa~~~~vi~V~~~~~~~~~~~~~~~~~~~apg~~i~~~~~~~~-~~~~~GTS~Aap~vaG~~All 201 (222)
T cd07492 123 IIVAAAPNNNDIGTPPASFPNVIGVKSDTADDPKSFWYIYVEFSADGVDIIAPAPHGR-YLTVSGNSFAAPHVTGMVALL 201 (222)
T ss_pred EEEEECCCCCCCCCCCccCCceEEEEecCCCCCcccccCCceEEeCCCCeEeecCCCC-EEEeccHHHHHHHHHHHHHHH
Confidence 4445555555544444444444444322100 026778888876654 567899999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHhhcc
Q psy13851 72 LEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 72 l~~~P~lt~~~v~~~L~~tA~ 92 (331)
++++|+|+++||+++|++||+
T Consensus 202 ~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 202 LSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999985
No 30
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=99.32 E-value=4.2e-12 Score=128.65 Aligned_cols=84 Identities=26% Similarity=0.286 Sum_probs=72.6
Q ss_pred EEEEEEeeeCCC-CCccCCCCCCc------cEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhh
Q psy13851 2 WTISINSAINDG-QNAHYDESCSS------TLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEA 74 (331)
Q Consensus 2 ~tisVga~~~~G-~~a~YS~~g~~------v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~ 74 (331)
.+|+|+|.++++ ..+.||++|+. ..++| ||..|+++.+.+.+ ..++|||||||+|||++|||+|.
T Consensus 345 ~vitVga~~~~~~~~~~~Ss~G~~~~~~~kpdi~A-------PG~~i~s~~~~~~~-~~~sGTS~Aap~vaG~aALl~~~ 416 (455)
T cd07478 345 SVITVGAYNQNNNSIAIFSGRGPTRDGRIKPDIAA-------PGVNILTASPGGGY-TTRSGTSVAAAIVAGACALLLQW 416 (455)
T ss_pred CcEEEEEEeCCCCcccCccCCCcCCCCCcCceEEe-------cCCCEEEeecCCcE-EeeCcHHHHHHHHHHHHHHHHHh
Confidence 379999999875 58999999987 56676 47889999887765 67999999999999999999985
Q ss_pred C------CCCCHHHHHHHHHhhccc
Q psy13851 75 N------PQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 75 ~------P~lt~~~v~~~L~~tA~~ 93 (331)
. |.|+..+|+.+|.++|++
T Consensus 417 ~~~~~~~p~~~~~~ik~~L~~tA~~ 441 (455)
T cd07478 417 GIVRGNDPYLYGEKIKTYLIRGARR 441 (455)
T ss_pred chhccCCCCCCHHHHHHHHHHhCcc
Confidence 4 678999999999999986
No 31
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=99.31 E-value=4.2e-12 Score=119.59 Aligned_cols=88 Identities=22% Similarity=0.191 Sum_probs=66.3
Q ss_pred EEEEEEeeeCCCCCccCCCCCCc-cEEEeecCCCCCC-----C----------CCeEEeeCCCCeEeecCCCCcchhhhh
Q psy13851 2 WTISINSAINDGQNAHYDESCSS-TLASTFSNGAKDP-----N----------TGVATTDLYGKCTTTHSGTSAAAPEAA 65 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~-v~~~a~s~g~~~p-----~----------~~I~tt~~~g~~~~~~~GTS~Aap~vA 65 (331)
++|+|||++.++.++.||+.|.. +.+++|+.....+ + ..+.+....+ .+..++|||||||+||
T Consensus 190 ~vi~Vga~~~~~~~~~~S~~g~~~~~~~apG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~GTS~AaP~Va 268 (294)
T cd07482 190 NVITVSATDNNGNLSSFSNYGNSRIDLAAPGGDFLLLDQYGKEKWVNNGLMTKEQILTTAPEG-GYAYMYGTSLAAPKVS 268 (294)
T ss_pred ceEEEEeeCCCCCcCccccCCCCcceEECCCCCcccccccCccccccccccccceeeecccCC-ceEeecchhhhhHHHH
Confidence 58999999999999999998865 4555554322100 0 0022223333 4567899999999999
Q ss_pred hHHHhhhhhCCCCCH-HHHHHHHHhh
Q psy13851 66 GVFALALEANPQLTW-RDIQHLTVLT 90 (331)
Q Consensus 66 G~~AL~l~~~P~lt~-~~v~~~L~~t 90 (331)
|++|||++++|.|++ +||+++|++|
T Consensus 269 G~aAll~~~~p~~~~~~~v~~~L~~T 294 (294)
T cd07482 269 GALALIIDKNPLKKPPDEAIRILYNT 294 (294)
T ss_pred HHHHHHHHHCCCCCcHHHHHHHHhhC
Confidence 999999999999999 9999999875
No 32
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.28 E-value=6.6e-12 Score=119.20 Aligned_cols=84 Identities=21% Similarity=0.189 Sum_probs=66.7
Q ss_pred EEEEEEeeeCCCCCccCCCCCCcc--------------------EEEeecCCCCCCCCCeEEee----------------
Q psy13851 2 WTISINSAINDGQNAHYDESCSST--------------------LASTFSNGAKDPNTGVATTD---------------- 45 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v--------------------~~~a~s~g~~~p~~~I~tt~---------------- 45 (331)
.+|+|||++.++..+.||+++... ++++| |..|.+..
T Consensus 171 ~vItVgA~~~~~~~~~~s~~~~~~~~~~~~fs~~Gp~~~~~~KPDl~ap-------G~~i~~~~~~~~~~~~~~~~~~~~ 243 (291)
T cd04847 171 NALTVGAITSDDDITDRARYSAVGPAPAGATTSSGPGSPGPIKPDVVAF-------GGNLAYDPSGNAADGDLSLLTTLS 243 (291)
T ss_pred hheeeeeeecCccCCCcccccccccccCCCccccCCCCCCCcCCcEEee-------CCceeecCCCCCccCcceeeeccc
Confidence 589999999999999998887642 23443 44454321
Q ss_pred -CCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHHHHhhcc
Q psy13851 46 -LYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 46 -~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~L~~tA~ 92 (331)
..+..+..++|||||||+|||++|||++++|++++.+|+.+|..+|+
T Consensus 244 ~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 244 SPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 11234567899999999999999999999999999999999999874
No 33
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.27 E-value=8.7e-12 Score=120.59 Aligned_cols=83 Identities=20% Similarity=0.143 Sum_probs=65.1
Q ss_pred EEEEEEeeeCC---------------CCCccCCCCCCcc------EEEeecCCCCCCCCCeEEeeCCC---------CeE
Q psy13851 2 WTISINSAIND---------------GQNAHYDESCSST------LASTFSNGAKDPNTGVATTDLYG---------KCT 51 (331)
Q Consensus 2 ~tisVga~~~~---------------G~~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt~~~g---------~~~ 51 (331)
.+|+|||+++. ++.+.||++|+.. .+++| |..|+++.+.. ..+
T Consensus 193 ~vitVgA~~~~~~~~~~~~~~~~~~~~~~~~fSs~Gp~~~g~~kPdv~Ap-------G~~i~s~~~~~~~~~~~~~~~~y 265 (311)
T cd07497 193 LAISVGAATNFDYRPFYLFGYLPGGSGDVVSWSSRGPSIAGDPKPDLAAI-------GAFAWAPGRVLDSGGALDGNEAF 265 (311)
T ss_pred CeEEEEeccCCcccchhhhccccCCCCCccccccCCCCcccCCCCceecc-------CcceEeecccCCCCcccCCCcce
Confidence 58999999753 6677889999875 45554 55566554321 134
Q ss_pred eecCCCCcchhhhhhHHHhhhhhCC------CCCHHHHHHHHHhhc
Q psy13851 52 TTHSGTSAAAPEAAGVFALALEANP------QLTWRDIQHLTVLTS 91 (331)
Q Consensus 52 ~~~~GTS~Aap~vAG~~AL~l~~~P------~lt~~~v~~~L~~tA 91 (331)
..++|||||||+|||++|||+|++| .+++.+||.+|+.||
T Consensus 266 ~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 266 DLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred eeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 6789999999999999999999876 689999999999886
No 34
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.23 E-value=1.6e-11 Score=117.09 Aligned_cols=53 Identities=34% Similarity=0.365 Sum_probs=47.2
Q ss_pred CCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHHHHhh
Q psy13851 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLT 90 (331)
Q Consensus 37 p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~L~~t 90 (331)
||..|+++...+. +..++|||||||+|||++||++|++|++++++++++|++.
T Consensus 218 pG~~i~s~~~~~~-~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~ 270 (297)
T cd07480 218 PGVDIVSAAPGGG-YRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQAR 270 (297)
T ss_pred CCCCeEeecCCCc-EEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHH
Confidence 6888998877665 4678999999999999999999999999999999999854
No 35
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=99.19 E-value=1.5e-11 Score=115.91 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=67.1
Q ss_pred EEEEEEeeeCCCC---------------CccCCCCCCcc------EEEeecCCCCCCCCCeEEee--------CCCCeEe
Q psy13851 2 WTISINSAINDGQ---------------NAHYDESCSST------LASTFSNGAKDPNTGVATTD--------LYGKCTT 52 (331)
Q Consensus 2 ~tisVga~~~~G~---------------~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt~--------~~g~~~~ 52 (331)
.+|+|+|++..+. .+.||+.|+.. .+++ ||..|.++. ....++.
T Consensus 173 ~vi~Vga~~~~~~~~~~~~~~~~~~~~~~~~~S~~G~~~~~~~~pdv~A-------pG~~i~~~~~~~~~~~~~~~~~~~ 245 (293)
T cd04842 173 NVLTVGASNNPSVSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLVA-------PGTGILSARSGGGGIGDTSDSAYT 245 (293)
T ss_pred ceEEEeeccCCCcccccccccccCCCCccccccCcCCCCCCCcCCCEEC-------CCCCeEeccCCCCCCCCCChhhee
Confidence 5899999999888 88899999865 3555 456677664 2234566
Q ss_pred ecCCCCcchhhhhhHHHhhhhhCCCCCH--------HHHHHHHHhhcc
Q psy13851 53 THSGTSAAAPEAAGVFALALEANPQLTW--------RDIQHLTVLTSK 92 (331)
Q Consensus 53 ~~~GTS~Aap~vAG~~AL~l~~~P~lt~--------~~v~~~L~~tA~ 92 (331)
.++|||||||+|||++|||+|++|++++ ..+|.+|..+|+
T Consensus 246 ~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 246 SKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred ecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 7899999999999999999998765555 599999999874
No 36
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=99.15 E-value=8.3e-11 Score=117.69 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=66.3
Q ss_pred EEEEEEeeeC--------------CCCCccCCCCCCcc------EEEeecCCCCCCCCCeEEeeCC-CCeEeecCCCCcc
Q psy13851 2 WTISINSAIN--------------DGQNAHYDESCSST------LASTFSNGAKDPNTGVATTDLY-GKCTTTHSGTSAA 60 (331)
Q Consensus 2 ~tisVga~~~--------------~G~~a~YS~~g~~v------~~~a~s~g~~~p~~~I~tt~~~-g~~~~~~~GTS~A 60 (331)
.+|+|||..+ .+.+..||++|+.. .++|| |..|.++... ...+..++|||||
T Consensus 302 ~VIsVGA~~~~~~~~~~y~~~~~~~~~~~~fSSrGP~~dG~~~pdI~AP-------G~~I~s~p~~~~~~~~~~sGTSmA 374 (412)
T cd04857 302 SVIGVGAYVSPEMMAAEYSLREKLPGNQYTWSSRGPTADGALGVSISAP-------GGAIASVPNWTLQGSQLMNGTSMS 374 (412)
T ss_pred CeEEEcceeccCccccccccccccCCccccccccCCcccCCcCceEEeC-------CCcEEEcccCCCCCeEEecccHHH
Confidence 3799998753 45677888998874 46664 5677765322 2234678999999
Q ss_pred hhhhhhHHHhhhh----hCCCCCHHHHHHHHHhhccc
Q psy13851 61 APEAAGVFALALE----ANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 61 ap~vAG~~AL~l~----~~P~lt~~~v~~~L~~tA~~ 93 (331)
+|+|||++|||++ .+|.+++.+|+.+|+.||++
T Consensus 375 aP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~ 411 (412)
T cd04857 375 SPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKK 411 (412)
T ss_pred HHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCcc
Confidence 9999999999985 47999999999999999985
No 37
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.08 E-value=1.4e-10 Score=111.10 Aligned_cols=90 Identities=26% Similarity=0.205 Sum_probs=64.2
Q ss_pred EEEEEeeeCCCCCc-cCCCCCCccEEEeecC---CCCCCCCCeEEeeCC---------CCeEeecCCCCcchhhhhhHHH
Q psy13851 3 TISINSAINDGQNA-HYDESCSSTLASTFSN---GAKDPNTGVATTDLY---------GKCTTTHSGTSAAAPEAAGVFA 69 (331)
Q Consensus 3 tisVga~~~~G~~a-~YS~~g~~v~~~a~s~---g~~~p~~~I~tt~~~---------g~~~~~~~GTS~Aap~vAG~~A 69 (331)
++.|.|+.|+|... .+....+.++++.... .-..||..|++.... ...+..++|||||||+|||++|
T Consensus 205 ilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~~~~di~apG~~i~~~~~~~~~~~~~~~~~~~~~~sGTS~AaP~vaG~aA 284 (307)
T cd04852 205 IFVAASAGNSGPGASTVPNVAPWVTTVAASTLKPDIAAPGVDILAAWTPEGADPGDARGEDFAFISGTSMASPHVAGVAA 284 (307)
T ss_pred CEEEEECCCCCCCCCcccCCCCCeEEEEeccCccceeeccCceeecccCccccccCCCCCcEEEeCcHHHHHHHHHHHHH
Confidence 46778888887322 2333344455544222 112367777766432 2335678999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHhhcc
Q psy13851 70 LALEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 70 L~l~~~P~lt~~~v~~~L~~tA~ 92 (331)
|++|++|.++++||+++|..||+
T Consensus 285 Ll~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 285 LLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred HHHHHCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999985
No 38
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.08 E-value=1.3e-10 Score=108.96 Aligned_cols=80 Identities=25% Similarity=0.268 Sum_probs=61.7
Q ss_pred EEEEEEeeeCCCCCccC---CCC--------CCccEEEeecCCCCCCCCCeEEeeCCCCeEeecCCCCcchhhhhhHHHh
Q psy13851 2 WTISINSAINDGQNAHY---DES--------CSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFAL 70 (331)
Q Consensus 2 ~tisVga~~~~G~~a~Y---S~~--------g~~v~~~a~s~g~~~p~~~I~tt~~~g~~~~~~~GTS~Aap~vAG~~AL 70 (331)
.+|+|||++..|.++.+ |++ +..+.++| ||..|.+ ..+. +..++|||||||+|||++||
T Consensus 151 nvItVGA~d~~g~~~~~s~~sn~~~~~~~~~~~~~di~A-------PG~~i~s--~~~~-~~~~sGTSmAaP~VaG~aAl 220 (247)
T cd07488 151 NSIVVGSTDRNGDRFFASDVSNAGSEINSYGRRKVLIVA-------PGSNYNL--PDGK-DDFVSGTSFSAPLVTGIIAL 220 (247)
T ss_pred CeEEEEEecCCCCcceecccccccCCCCCCCCceeEEEE-------eeeeEEC--CCCc-eeeecccchHHHHHHHHHHH
Confidence 47999999999987655 332 23455666 4677777 4444 35689999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHhhc
Q psy13851 71 ALEANPQLTWRDIQHLTVLTS 91 (331)
Q Consensus 71 ~l~~~P~lt~~~v~~~L~~tA 91 (331)
|++++|++...+.-.++.+.+
T Consensus 221 ll~~~p~~~~~~~~~~~~~~~ 241 (247)
T cd07488 221 LLEFYDRQYKKGNNNLIALRA 241 (247)
T ss_pred HHHHChhhhhCcchhHHHHHH
Confidence 999999999888777766544
No 39
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=99.07 E-value=3.5e-10 Score=108.66 Aligned_cols=44 Identities=45% Similarity=0.491 Sum_probs=41.3
Q ss_pred eEeecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHHHHhhccc
Q psy13851 50 CTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 50 ~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~L~~tA~~ 93 (331)
.+..++|||||+|||||++|||++++|.|++.+|+++|..+|++
T Consensus 241 ~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~ 284 (298)
T cd07494 241 GWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARD 284 (298)
T ss_pred CeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcc
Confidence 34678999999999999999999999999999999999999986
No 40
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=99.05 E-value=3.4e-10 Score=101.12 Aligned_cols=82 Identities=30% Similarity=0.296 Sum_probs=67.6
Q ss_pred EEEEEEeeeCCCCCc-cCCCCCCccEEEeecCCCCCCCCCeEEe-eCCCCeEeecCCCCcchhhhhhHHHhhhhhCCCCC
Q psy13851 2 WTISINSAINDGQNA-HYDESCSSTLASTFSNGAKDPNTGVATT-DLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLT 79 (331)
Q Consensus 2 ~tisVga~~~~G~~a-~YS~~g~~v~~~a~s~g~~~p~~~I~tt-~~~g~~~~~~~GTS~Aap~vAG~~AL~l~~~P~lt 79 (331)
.+|+|++++..+... .|+..+..+.+.+|.. .+... ......+..++|||+|||+|||++||+++++|+|+
T Consensus 158 ~vi~Vga~~~~~~~~~~~~~~~~~~~~~apg~-------~~~~~~~~~~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~ 230 (241)
T cd00306 158 NVIAVGAVDRDGTPASPSSNGGAGVDIAAPGG-------DILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSANPDLT 230 (241)
T ss_pred ceEEEEecCcCCCccCCcCCCCCCceEEeCcC-------CccCcccCCCCCeEeeccHHHHHHHHHHHHHHHHHHCCCCC
Confidence 579999999999998 8999999999998754 23221 12233456789999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy13851 80 WRDIQHLTVLT 90 (331)
Q Consensus 80 ~~~v~~~L~~t 90 (331)
+++++.+|..+
T Consensus 231 ~~~~~~~l~~t 241 (241)
T cd00306 231 PAQVKAALLST 241 (241)
T ss_pred HHHHHHHHhhC
Confidence 99999998753
No 41
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=98.91 E-value=1.4e-09 Score=101.81 Aligned_cols=66 Identities=26% Similarity=0.182 Sum_probs=56.3
Q ss_pred EEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeC--CCCeEeecCCCCcchhhhhhHHHhhhhh
Q psy13851 2 WTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDL--YGKCTTTHSGTSAAAPEAAGVFALALEA 74 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~--~g~~~~~~~GTS~Aap~vAG~~AL~l~~ 74 (331)
.+|+|+|++.+|+++.||+++..+.+.+| |.+|+++.. .++.+..++|||||+|+|||++||+|+.
T Consensus 162 ~Vi~VgA~~~~g~~~~~S~~g~~vd~~AP-------G~~i~s~~~~~~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 162 RIFRIGAADEDGGADAPVGDEDRVDYILP-------GENVEARDRPPLSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CeEEEEeeCCCCCCccccCCCCcceEEeC-------CCceecCCcCCCCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999988885 678888764 1334567999999999999999999973
No 42
>KOG1153|consensus
Probab=98.50 E-value=9.7e-08 Score=95.07 Aligned_cols=84 Identities=17% Similarity=0.181 Sum_probs=68.9
Q ss_pred EEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEEeeCCCC-eEeecCCCCcchhhhhhHHHhhhhhCC-----
Q psy13851 3 TISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGK-CTTTHSGTSAAAPEAAGVFALALEANP----- 76 (331)
Q Consensus 3 tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~tt~~~g~-~~~~~~GTS~Aap~vAG~~AL~l~~~P----- 76 (331)
+|+|||++-..++++|||+|.+|.+-|| |..|.+++..+. .+...+|||||+|+|||++|..+...|
T Consensus 369 aITVGAst~~D~iA~FSN~G~CVdiFAP-------Gv~IlSs~iGs~~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~ 441 (501)
T KOG1153|consen 369 AITVGASTKNDTIAFFSNWGKCVDIFAP-------GVNILSSWIGSNNATAILSGTSMASPHVAGLAAYFLSLGPLPDSS 441 (501)
T ss_pred cEEecccccccchhhhcCccceeeeecC-------chhhhhhhhcCccchheeecccccCcchhhhHHHhhhcCCCChHH
Confidence 6999999999999999999999999985 788999876542 346789999999999999999999877
Q ss_pred ----CCCHHHHHHHHHhhccc
Q psy13851 77 ----QLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 77 ----~lt~~~v~~~L~~tA~~ 93 (331)
-.++.+++..+..=..+
T Consensus 442 f~n~~~s~~~lk~~~l~~~~~ 462 (501)
T KOG1153|consen 442 FANDAGSPSELKKRLLKFKTQ 462 (501)
T ss_pred hhhccCChHHhhhhhhccccc
Confidence 33677777665544433
No 43
>KOG4266|consensus
Probab=97.95 E-value=8.5e-06 Score=84.16 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=69.5
Q ss_pred CEEEEEEeeeCCCCCccCCCCCCccEEEeecCCCCCCCCCeEE-------eeCCCCeEeecCCCCcchhhhhhHHHhhhh
Q psy13851 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVAT-------TDLYGKCTTTHSGTSAAAPEAAGVFALALE 73 (331)
Q Consensus 1 ~~tisVga~~~~G~~a~YS~~g~~v~~~a~s~g~~~p~~~I~t-------t~~~g~~~~~~~GTS~Aap~vAG~~AL~l~ 73 (331)
+.||.||.++.+...|.||+.|-.++-- |.+.+. -+++|+| .+..++|. ..+|||.|.|+|||+++|+.+
T Consensus 344 sDViGVGGIdfdD~IA~FSSRGMtTWEL-P~GYGR-mkpDiVtYG~~v~GS~v~~GCr-~LSGTSVaSPVVAGav~LLvS 420 (1033)
T KOG4266|consen 344 SDVIGVGGIDFDDHIASFSSRGMTTWEL-PHGYGR-MKPDIVTYGRDVMGSKVSTGCR-SLSGTSVASPVVAGAVCLLVS 420 (1033)
T ss_pred cceeeeccccccchhhhhccCCcceeec-CCcccc-cCCceEeeccccccCcccccch-hccCCcccchhhhceeeeEee
Confidence 4589999999999999999999876543 222111 1345554 34456784 589999999999999999987
Q ss_pred ----hCCCCCHHHHHHHHHhhccc
Q psy13851 74 ----ANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 74 ----~~P~lt~~~v~~~L~~tA~~ 93 (331)
+.--+.++.+++.|.++|.+
T Consensus 421 ~~~qk~dl~NPASmKQaLiegA~k 444 (1033)
T KOG4266|consen 421 VEAQKKDLLNPASMKQALIEGAAK 444 (1033)
T ss_pred eheehhhccCHHHHHHHHHhHHhh
Confidence 45567899999999999987
No 44
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=3.7e-05 Score=75.57 Aligned_cols=84 Identities=30% Similarity=0.266 Sum_probs=67.3
Q ss_pred EEEEEEeeeCCCCCccCCCCCCc--cEEEeecCCCCCCCCCeEE-----eeCCCC-eEeecCCCCcchhhhhhHHHhhhh
Q psy13851 2 WTISINSAINDGQNAHYDESCSS--TLASTFSNGAKDPNTGVAT-----TDLYGK-CTTTHSGTSAAAPEAAGVFALALE 73 (331)
Q Consensus 2 ~tisVga~~~~G~~a~YS~~g~~--v~~~a~s~g~~~p~~~I~t-----t~~~g~-~~~~~~GTS~Aap~vAG~~AL~l~ 73 (331)
.+|+|++++.....+.||+.|.. +...+| +..|.. +..... .+..+.||||++|+++|++||+++
T Consensus 305 ~~i~v~a~~~~~~~~~~s~~g~~~~~~~~ap-------g~~i~~~~~~~~~~~~~~~~~~~~Gts~a~p~v~g~aal~~~ 377 (508)
T COG1404 305 NVIAVGALDLSDTVASFSNDGSPTGVDIAAP-------GVNILSLSAVNTLPGDGADYVTLSGTSMAAPHVSGVAALVLS 377 (508)
T ss_pred ceEEEecCCCCCccccccccCCCCCcceeCC-------CccccccccceeeeCCccceEeeccccccccHHHHHHHHHHc
Confidence 46899999998999999999984 666665 444443 333322 367899999999999999999999
Q ss_pred hCC-CCCHHHHHHHHHhhcc
Q psy13851 74 ANP-QLTWRDIQHLTVLTSK 92 (331)
Q Consensus 74 ~~P-~lt~~~v~~~L~~tA~ 92 (331)
.+| .++..+++..+..++.
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~ 397 (508)
T COG1404 378 ANPNELTPAQVRNLIVTTAG 397 (508)
T ss_pred cCcccCCHHHHHHHHhhccc
Confidence 999 8999999999777664
No 45
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=97.03 E-value=0.0022 Score=63.36 Aligned_cols=26 Identities=46% Similarity=0.376 Sum_probs=23.1
Q ss_pred EeecCCCCcchhhhhhHHHhhhhhCC
Q psy13851 51 TTTHSGTSAAAPEAAGVFALALEANP 76 (331)
Q Consensus 51 ~~~~~GTS~Aap~vAG~~AL~l~~~P 76 (331)
.....|||+|||++||++|||.|++.
T Consensus 274 ~~~~gGTS~aaP~~Ag~~Al~n~~~~ 299 (361)
T cd04056 274 WYLVGGTSAAAPLFAGLIALINQARL 299 (361)
T ss_pred EEeeCCccHHHHHHHHHHHHHHHHhh
Confidence 34589999999999999999999765
No 46
>KOG1114|consensus
Probab=96.97 E-value=0.0011 Score=71.74 Aligned_cols=42 Identities=29% Similarity=0.320 Sum_probs=38.9
Q ss_pred eecCCCCcchhhhhhHHHhhhh----hCCCCCHHHHHHHHHhhccc
Q psy13851 52 TTHSGTSAAAPEAAGVFALALE----ANPQLTWRDIQHLTVLTSKR 93 (331)
Q Consensus 52 ~~~~GTS~Aap~vAG~~AL~l~----~~P~lt~~~v~~~L~~tA~~ 93 (331)
..|+|||||+|.++|.+|||++ .|-..|+..|+..|..||++
T Consensus 491 qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~ 536 (1304)
T KOG1114|consen 491 QLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATK 536 (1304)
T ss_pred hhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccc
Confidence 5699999999999999999997 47888999999999999997
No 47
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=84.79 E-value=4.5 Score=41.44 Aligned_cols=76 Identities=12% Similarity=0.212 Sum_probs=45.9
Q ss_pred EEEeeccccceEEEEeCCCCCeeEEcccccCCCc----------------CCCCccccceeeccccCCCCCceEEEEEEE
Q psy13851 224 ITLNATTRGAVELFLTSPMGTRSMILSKRINDND----------------RRDGFTKWPFMTTHTWGEYPQGTWLLEVSP 287 (331)
Q Consensus 224 v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~----------------~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D 287 (331)
++|=-.....++|.|+||+|..+..+..+..... ....+......... +.....|.|+|++..
T Consensus 226 ~eiW~~~~d~~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~~~~~~~g~~~i~i~-~~~~~~GiW~i~~~~ 304 (455)
T cd07478 226 LEIWGDFPDRFSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYYLPEPYTGDQLIFIR-FKNIKPGIWKIRLTG 304 (455)
T ss_pred EEEecCCCCEEEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEcCCCCCCCCeEEEEE-ccCCCccceEEEEEe
Confidence 3455567789999999999988765554332110 00111111111122 456778999999997
Q ss_pred cccCCCCcccccEEEEEEEE
Q psy13851 288 YILAGLPMLFIINLTITWAL 307 (331)
Q Consensus 288 ~~~~~~~~~~~tG~L~~W~L 307 (331)
.... .|.++-|--
T Consensus 305 ~~~~-------~g~~~~Wlp 317 (455)
T cd07478 305 VSIT-------DGRFDAWLP 317 (455)
T ss_pred ccCC-------CceEEEEec
Confidence 6553 588888854
No 48
>COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones]
Probab=84.67 E-value=1.5 Score=49.58 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.6
Q ss_pred eEeecCCCCcchhhhhhHHHhhhhh
Q psy13851 50 CTTTHSGTSAAAPEAAGVFALALEA 74 (331)
Q Consensus 50 ~~~~~~GTS~Aap~vAG~~AL~l~~ 74 (331)
......|||.|+|+.||++|||-|.
T Consensus 472 ~~~~~GGTS~AtPltAGiiAdi~q~ 496 (1174)
T COG4934 472 QTYVAGGTSLATPLTAGIIADIEQY 496 (1174)
T ss_pred EEEEecccccccchHHHHHHHHHHH
Confidence 3446789999999999999999984
No 49
>PF09315 DUF1973: Domain of unknown function (DUF1973); InterPro: IPR015394 These functionally uncharacterised domains are found in various eukaryotic calcium-dependent chloride channels.
Probab=76.58 E-value=41 Score=30.27 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=34.3
Q ss_pred eeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEcc
Q psy13851 227 NATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYI 289 (331)
Q Consensus 227 ~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~~ 289 (331)
.........|.|++|+|+...-.. .| .. ..+......|..-.|.|+++|....
T Consensus 36 ~w~~~~~p~i~L~~P~G~~~~~~~---~d--~~-----~~~~~i~ipg~ae~G~W~y~i~~~~ 88 (179)
T PF09315_consen 36 TWQNSSPPSITLTDPSGTVYTTFT---TD--SN-----SKTARIQIPGTAEVGTWTYSITNTS 88 (179)
T ss_pred EECCCCCceEEEECCCCCEEeeeE---Ec--cc-----ccEEEEECCCCcccccEEEEEecCC
Confidence 334446788999999999976411 12 11 1233344567777999999996554
No 50
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=72.61 E-value=12 Score=29.42 Aligned_cols=55 Identities=18% Similarity=0.301 Sum_probs=32.3
Q ss_pred eccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEc
Q psy13851 228 ATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPY 288 (331)
Q Consensus 228 h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~ 288 (331)
.+....+.|+|..|+|....-...... ...|.....| .+--+.+.|.|+|++.-.
T Consensus 32 ~~~~~~~~v~i~dp~g~~v~~~~~~~~---~~~G~~~~~~---~lp~~~~~G~y~i~~~~~ 86 (99)
T PF01835_consen 32 PPANSPVTVTIKDPSGNEVFRWSVNTT---NENGIFSGSF---QLPDDAPLGTYTIRVKTD 86 (99)
T ss_dssp CESSEEEEEEEEETTSEEEEEEEEEET---TCTTEEEEEE---E--SS---EEEEEEEEET
T ss_pred cccCCceEEEEECCCCCEEEEEEeeee---CCCCEEEEEE---ECCCCCCCEeEEEEEEEc
Confidence 355678999999999998653332011 2344433333 456677899999999864
No 51
>PF12975 DUF3859: Domain of unknown function (DUF3859); InterPro: IPR024331 This entry represents a functionally uncharacterised domain, which is found in bacterial proteins.; PDB: 3N6Y_B.
Probab=61.85 E-value=25 Score=29.76 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=27.5
Q ss_pred EEEEEeeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEc
Q psy13851 222 AVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPY 288 (331)
Q Consensus 222 v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~ 288 (331)
|++-+.||.. |.|..-.....-..+ ...+-.+|.|.+-.+--|...|.|+|.|..+
T Consensus 59 lt~~i~HP~i---------p~~~~g~~~~~~~~~--v~~~~~~~~~~~f~~~~e~v~G~Wr~~i~~~ 114 (125)
T PF12975_consen 59 LTVCITHPGI---------PDGDKGDTVEPWQGE--VYVGSNDWDFYTFDTPWEPVPGEWRFTIELD 114 (125)
T ss_dssp EEEEEEEEEE---------TTS-EEEEEEEEE-----TT-S-EEEEEE--SGGG---EEEEEEEEET
T ss_pred EEEEEeCCCC---------CCCCCCCEECcEEEE--ecCCCcceEEEEcCcccccCCceEEEEEEEC
Confidence 5666677643 566555544332211 1222235555555666788899999999865
No 52
>PF13940 Ldr_toxin: Toxin Ldr, type I toxin-antitoxin system
Probab=38.45 E-value=19 Score=23.81 Aligned_cols=14 Identities=43% Similarity=0.541 Sum_probs=11.4
Q ss_pred cchhhhhhHHHhhh
Q psy13851 59 AAAPEAAGVFALAL 72 (331)
Q Consensus 59 ~Aap~vAG~~AL~l 72 (331)
.|||++||+++-+.
T Consensus 14 LAAP~iagIi~s~i 27 (35)
T PF13940_consen 14 LAAPIIAGIIASLI 27 (35)
T ss_pred hHhHHHHHHHHHHH
Confidence 58999999988653
No 53
>PRK15019 CsdA-binding activator; Provisional
Probab=31.94 E-value=35 Score=29.86 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=28.1
Q ss_pred ecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHH
Q psy13851 53 THSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86 (331)
Q Consensus 53 ~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~ 86 (331)
.+.|.| =|++|-|.+||+++..-..++++|...
T Consensus 78 ~f~~dS-DA~IvkGl~alL~~~~~g~tp~eIl~~ 110 (147)
T PRK15019 78 HFFGDS-EGRIVRGLLAVLLTAVEGKTAAELQAQ 110 (147)
T ss_pred EEEeeC-ccHHHHHHHHHHHHHHcCCCHHHHHhc
Confidence 355665 689999999999999999999998764
No 54
>COG4676 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.94 E-value=4.6e+02 Score=24.77 Aligned_cols=86 Identities=21% Similarity=0.150 Sum_probs=49.1
Q ss_pred EEEEEee-ccccceEEEEeCCCCCeeEE-----cccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEcccCCCCc
Q psy13851 222 AVITLNA-TTRGAVELFLTSPMGTRSMI-----LSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYILAGLPM 295 (331)
Q Consensus 222 v~v~i~h-~~~GdL~I~L~SPsGT~s~L-----l~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~~~~~~~~ 295 (331)
+++-++. +..-||.+++++|+|.-.-- .+....|.+...||----|. -+-+..|+|.+.|.--.......
T Consensus 143 lRvvLsWD~d~tdlDlHvvtPdG~Hawygn~~lsngg~LDvDvttGyGPEifa----~paP~~G~ylvYVNY~G~~n~~g 218 (268)
T COG4676 143 LRVVLSWDTDNTDLDLHVVTPDGDHAWYGNPVLSNGGALDVDVTTGYGPEIFA----MPAPVHGTYLVYVNYYGGGNAAG 218 (268)
T ss_pred EEEEEEECCCCCceeEEEecCCCceeeecCceecCCcccCcccccCCCcceec----cCCCCCccEEEEEEeecCccccc
Confidence 3444443 56789999999999987542 22223444455555321122 35677999999998655432111
Q ss_pred cc----ccEEEEEEEEEeee
Q psy13851 296 LF----IINLTITWALTARR 311 (331)
Q Consensus 296 ~~----~tG~L~~W~L~~~g 311 (331)
.| ..=.|..-+|++--
T Consensus 219 yf~a~~~~~dltTAq~tLit 238 (268)
T COG4676 219 YFDATRSEQDLTTAQLTLIT 238 (268)
T ss_pred ccccccchhheeeEEEEEEe
Confidence 11 12345666676543
No 55
>COG2166 sufE Cysteine desulfurase SufE subunit [Posttranslational modification, protein turnover, chaperones]
Probab=30.64 E-value=32 Score=30.08 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=27.6
Q ss_pred ecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHH
Q psy13851 53 THSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86 (331)
Q Consensus 53 ~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~ 86 (331)
.|.|=| =|++|.|.+|++++.+-..|+.+|...
T Consensus 73 ~F~gdS-dA~ivrGL~aill~~~~G~t~~eI~~~ 105 (144)
T COG2166 73 HFFGDS-DARIVRGLLAILLAAYSGKTAAEILAF 105 (144)
T ss_pred EEeccc-hhHHHHHHHHHHHHHHcCCCHHHHHcC
Confidence 455554 468999999999999999999998766
No 56
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=30.38 E-value=76 Score=23.77 Aligned_cols=18 Identities=22% Similarity=0.126 Sum_probs=14.3
Q ss_pred ccCCCCCceEEEEEEEcc
Q psy13851 272 TWGEYPQGTWLLEVSPYI 289 (331)
Q Consensus 272 f~GE~~~GtWtL~V~D~~ 289 (331)
.......|.|+++|.|..
T Consensus 37 ~~~~~~~G~WrV~V~~~~ 54 (66)
T PF11141_consen 37 QNFPDQPGDWRVEVVDED 54 (66)
T ss_pred ecCCCCCcCEEEEEEcCC
Confidence 334489999999999864
No 57
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=30.36 E-value=2.3e+02 Score=22.01 Aligned_cols=56 Identities=20% Similarity=0.287 Sum_probs=29.9
Q ss_pred EEEEEeeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEc
Q psy13851 222 AVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPY 288 (331)
Q Consensus 222 v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~ 288 (331)
+.|+....--++|++.|++|+|....+. ..| ..+|.-...|. =...|.++|.|.-.
T Consensus 22 f~v~~~d~G~~~~~v~i~~p~g~~~~~~---v~d--~~dGty~v~y~------P~~~G~~~i~V~~~ 77 (93)
T smart00557 22 FTIDTRGAGGGELEVEVTGPSGKKVPVE---VKD--NGDGTYTVSYT------PTEPGDYTVTVKFG 77 (93)
T ss_pred EEEEcCCCCCCcEEEEEECCCCCeeEeE---EEe--CCCCEEEEEEE------eCCCEeEEEEEEEC
Confidence 3333333345799999999999654331 112 12231111222 33457888887744
No 58
>TIGR03391 FeS_syn_CsdE cysteine desulfurase, sulfur acceptor subunit CsdE. Members of this protein family are CsdE, formerly called YgdK. This protein, found as a paralog to SufE in Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, works together and physically interacts with CsdA (a paralog of SufS). CsdA has cysteine desulfurase activity that is enhanced by this protein (CsdE), in which Cys-61 (numbered as in E. coli) is a sulfur acceptor site. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=30.20 E-value=38 Score=29.28 Aligned_cols=33 Identities=21% Similarity=0.147 Sum_probs=28.5
Q ss_pred ecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHH
Q psy13851 53 THSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86 (331)
Q Consensus 53 ~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~ 86 (331)
.+.|.| =|++|-|++||+++.+-..++.+|...
T Consensus 73 ~f~~dS-Da~IvkGl~alL~~~~~g~tp~eI~~~ 105 (138)
T TIGR03391 73 HFYGDS-EGRIVRGLLAVLLTAVEGKTPEQLLAQ 105 (138)
T ss_pred EEEecC-ccHHHHHHHHHHHHHHcCCCHHHHHHC
Confidence 356666 689999999999999999999998765
No 59
>PRK09296 cysteine desufuration protein SufE; Provisional
Probab=27.79 E-value=44 Score=28.90 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=28.6
Q ss_pred ecCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHH
Q psy13851 53 THSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86 (331)
Q Consensus 53 ~~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~ 86 (331)
.+.|-| =|++|-|.+||+++..-..++.+|..+
T Consensus 68 ~f~~dS-Da~ivkGl~alL~~~~~g~tp~eIl~~ 100 (138)
T PRK09296 68 ELQGDS-DAAIVKGLIAVVFILYQQMTPQDIVNF 100 (138)
T ss_pred EEEEec-ccHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 355666 689999999999999999999998875
No 60
>PF02657 SufE: Fe-S metabolism associated domain; InterPro: IPR003808 This entry represents the core domain of SufE and related proteins. This domain of SufE shows strong structural similarity to IscU, and the sulfur-acceptor site in SufE coincides with the location of the cysteine residues mediating Fe-S cluster assembly in IscU. Thus, a conserved core structure is implicated in mediating the interactions of both SufE and IscU with the mutually homologous cysteine desulfurase enzymes present in their respective operons [].; PDB: 1MZG_B 1WLO_A 3G0M_A 1NI7_A.
Probab=26.97 E-value=56 Score=27.57 Aligned_cols=32 Identities=28% Similarity=0.227 Sum_probs=26.1
Q ss_pred cCCCCcchhhhhhHHHhhhhhCCCCCHHHHHHH
Q psy13851 54 HSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86 (331)
Q Consensus 54 ~~GTS~Aap~vAG~~AL~l~~~P~lt~~~v~~~ 86 (331)
+.|.|= |+++-|++||+++..-..++.+|...
T Consensus 60 f~adSd-a~ivkGl~all~~~~~g~t~~eI~~~ 91 (125)
T PF02657_consen 60 FRADSD-ARIVKGLLALLLEVLNGQTPEEILAF 91 (125)
T ss_dssp EEEEES-SHHHHHHHHHHHHHTTT-BHHHHHHS
T ss_pred EEecCc-cHHHHHHHHHHHHHHcCCCHHHHHhC
Confidence 455544 67999999999999999999998876
No 61
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=26.26 E-value=3.1e+02 Score=30.86 Aligned_cols=51 Identities=22% Similarity=0.174 Sum_probs=32.3
Q ss_pred eeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEc
Q psy13851 227 NATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPY 288 (331)
Q Consensus 227 ~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~ 288 (331)
.|.. .+.+|.|++|+|+. ... +. .+- ....-.+..-|-.-.|.|++.+...
T Consensus 522 tw~~-~~p~i~l~dP~G~~---~~~--~~---~d~--~~~~a~l~ipg~a~~G~W~y~l~~~ 572 (863)
T TIGR00868 522 TWEF-LKPEIFLQDPSGKS---TSD--FL---VDK--LNKMAYLQIPGTAKVGTWTYSLQAS 572 (863)
T ss_pred EcCC-CCceEEEECCCCCc---ccc--ce---Eee--cceEEEEEcCCCCccceeEEEEecc
Confidence 4443 37899999999996 111 11 000 1123344667877899999999765
No 62
>PF11903 DUF3423: Protein of unknown function (DUF3423); InterPro: IPR021831 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 73 to 118 amino acids in length.
Probab=25.33 E-value=79 Score=24.39 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.7
Q ss_pred HHhhhhhCCCCCHHHHHHHHHhhcc
Q psy13851 68 FALALEANPQLTWRDIQHLTVLTSK 92 (331)
Q Consensus 68 ~AL~l~~~P~lt~~~v~~~L~~tA~ 92 (331)
++.+.+.||+|+...|+.+|...+.
T Consensus 35 iGr~~E~np~l~~~~I~~~l~~~~~ 59 (72)
T PF11903_consen 35 IGRAAEDNPDLSYSFIEEMLLAAEE 59 (72)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHhhh
Confidence 5667789999999999999988775
No 63
>PF06366 FlhE: Flagellar protein FlhE; InterPro: IPR009420 This family consists of several Enterobacterial FlhE flagellar proteins. The exact function of this family is unknown [].; GO: 0019861 flagellum
Probab=24.04 E-value=3.5e+02 Score=22.40 Aligned_cols=59 Identities=17% Similarity=0.109 Sum_probs=43.3
Q ss_pred eeeeEEEEEEEeeccccceEEEEeCCCCCeeEEcccccCCCcCCCCccccceeeccccCCCCCceEEEEEEEcc
Q psy13851 216 YVEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYI 289 (331)
Q Consensus 216 ~iE~V~v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r~~d~~~~~g~~~~~f~s~~f~GE~~~GtWtL~V~D~~ 289 (331)
.|..|.-+.++..+.-..|+++|-+|. +-+.++. ..| .+..|-|+++.+..++...-..
T Consensus 28 ~it~V~WRy~l~~~~P~gL~v~LC~~~--rCv~L~g-------~sG------~T~af~G~~A~~pf~F~~~v~g 86 (106)
T PF06366_consen 28 TITRVSWRYQLLSPPPAGLQVRLCSPT--RCVALDG-------ASG------STRAFAGLPANEPFRFVFRVPG 86 (106)
T ss_pred EEEEEEEEEEECCCCCCCeEEEecCCC--ccEEccC-------CCC------cccccCCcCCCCCEEEEEEecC
Confidence 577888899999888889999999988 4444432 122 1346789999998888877544
No 64
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.94 E-value=2e+02 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.364 Sum_probs=24.5
Q ss_pred EEEEEeeccccceEEEEeCCCCCeeEEcccc
Q psy13851 222 AVITLNATTRGAVELFLTSPMGTRSMILSKR 252 (331)
Q Consensus 222 v~v~i~h~~~GdL~I~L~SPsGT~s~Ll~~r 252 (331)
|++.++....|-|.|..+.++|....|+.++
T Consensus 9 v~~~~~~~~~~Yl~l~~~~~~G~v~~L~Pn~ 39 (83)
T PF14326_consen 9 VRFRVTSNRDGYLYLFYIDADGKVTLLFPNR 39 (83)
T ss_pred EEEEEEeCCCeEEEEEEECCCCCEEEEecCc
Confidence 3455556888899999999999998887653
Done!