RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13851
(331 letters)
>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like,
Peptidase S8 family domain in Protein convertases.
Protein convertases, whose members include furins and
kexins, are members of the peptidase S8 or Subtilase
clan of proteases. They have an Asp/His/Ser catalytic
triad that is not homologous to trypsin. Kexins are
involved in the activation of peptide hormones, growth
factors, and viral proteins. Furin cleaves cell surface
vasoactive peptides and proteins involved in
cardiovascular tissue remodeling in the TGN, at cell
surface, or in endosomes but rarely in the ER. Furin
also plays a key role in blood pressure regulation
though the activation of transforming growth factor
(TGF)-beta. High specificity is seen for cleavage after
dibasic (Lys-Arg or Arg-Arg) or multiple basic residues
in protein convertases. There is also strong sequence
conservation.
Length = 297
Score = 156 bits (398), Expect = 1e-45
Identities = 50/94 (53%), Positives = 66/94 (70%), Gaps = 2/94 (2%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYG--KCTTTHSGTS 58
++TIS+++ +G A Y E SS LAS S G+ +P + TTDL G CT++H+GTS
Sbjct: 204 IYTISVSAVTANGVRASYSEVGSSVLASAPSGGSGNPEASIVTTDLGGNCNCTSSHNGTS 263
Query: 59 AAAPEAAGVFALALEANPQLTWRDIQHLTVLTSK 92
AAAP AAGV AL LEANP LTWRD+QH+ LT++
Sbjct: 264 AAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297
>gnl|CDD|201820 pfam01483, P_proprotein, Proprotein convertase P-domain. A unique
feature of the eukaryotic subtilisin-like proprotein
convertases is the presence of an additional highly
conserved sequence of approximately 150 residues (P
domain) located immediately downstream of the catalytic
domain.
Length = 87
Score = 105 bits (264), Expect = 1e-28
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 217 VEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEY 276
+EHVQ + + T RG + + LTSP GTRS++L++R D+ R GF W FM+ H WGE
Sbjct: 1 LEHVQVSVNITHTRRGDLRITLTSPSGTRSVLLNRRPRDDS-RSGFVNWTFMSVHHWGEN 59
Query: 277 PQGTWLLEV 285
GTW LEV
Sbjct: 60 AVGTWTLEV 68
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 77.8 bits (192), Expect = 2e-16
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 6/92 (6%)
Query: 4 ISINSAINDGQNAHYDESCSSTL---ASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
I++ + +G A + + G ++ DL +HSGTS A
Sbjct: 166 ITVGAVTENGTIADFSNYGGPVDGIKPDIVAPGGNILSS-GPGGDLG--GYDSHSGTSMA 222
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSK 92
AP AG AL L ANP LT ++ L V T+
Sbjct: 223 APLVAGAAALLLSANPSLTPETLRALLVTTAT 254
>gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53
families. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) family include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53, it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium;
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 241
Score = 53.0 bits (127), Expect = 4e-08
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 6/74 (8%)
Query: 23 SSTLASTFSNGAKDP------NTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANP 76
T AS SNG +++ G T SGTS AAP AGV AL L ANP
Sbjct: 168 DGTPASPSSNGGAGVDIAAPGGDILSSPTTGGGGYATLSGTSMAAPIVAGVAALLLSANP 227
Query: 77 QLTWRDIQHLTVLT 90
LT ++ + T
Sbjct: 228 DLTPAQVKAALLST 241
>gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain
in Subtilisin-like proteins. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 259
Score = 50.3 bits (121), Expect = 3e-07
Identities = 31/94 (32%), Positives = 36/94 (38%), Gaps = 17/94 (18%)
Query: 7 NSAINDGQNAHYDESCSS----TLASTFSNGAKDP--NTGVATTDLY-----------GK 49
N N+ + Y S ++A+T SN A N G T DL G
Sbjct: 157 NDGTNNDKTPTYPASYDLDNIISVAATDSNDALASFSNYGKKTVDLAAPGVDILSTSPGG 216
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
SGTS A P AG AL L NP LT I
Sbjct: 217 GYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQI 250
>gnl|CDD|227271 COG4935, COG4935, Regulatory P domain of the subtilisin-like
proprotein convertases and other proteases
[Posttranslational modification, protein turnover,
chaperones].
Length = 177
Score = 45.6 bits (108), Expect = 6e-06
Identities = 19/72 (26%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 215 SYVEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRD-GFTKWPFMTTHTW 273
++++ V + + RG + + L SP G + D G+ FM W
Sbjct: 35 NFIKDVTVRVDITHEYRGDLRITLISPSGQGILSNLTLGRRYDDDSQGYNDQSFMLVQLW 94
Query: 274 GEYPQGTWLLEV 285
GE +G W LEV
Sbjct: 95 GERAEGNWRLEV 106
>gnl|CDD|173819 cd07494, Peptidases_S8_10, Peptidase S8 family domain,
uncharacterized subfamily 10. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 298
Score = 44.8 bits (106), Expect = 3e-05
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 55 SGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86
SGTSAAAP+ AGV AL L+ANP L+ + L
Sbjct: 246 SGTSAAAPQVAGVCALMLQANPGLSPERARSL 277
>gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family.
Members of the peptidase S53 (sedolisin) family include
endopeptidases and exopeptidases. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of Asn in subtilisin. The stability of
these enzymes may be enhanced by calcium, some members
have been shown to bind up to 4 ions via binding sites
with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values. Characterized sedolisins include Kumamolisin,
an extracellular calcium-dependent thermostable
endopeptidase from Bacillus. The enzyme is synthesized
with a 188 amino acid N-terminal preprotein region which
is cleaved after the extraction into the extracellular
space with low pH. One kumamolysin paralog,
kumamolisin-As, is believed to be a collagenase. TPP1 is
a serine protease that functions as a tripeptidyl
exopeptidase as well as an endopeptidase. Less is known
about PSCP from Pseudomonas which is thought to be an
aspartic proteinase.
Length = 275
Score = 44.2 bits (105), Expect = 4e-05
Identities = 23/37 (62%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 55 SGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTS 91
GTSAAAP AAGV AL L ANP LT DI L S
Sbjct: 214 FGTSAAAPHAAGVAALVLSANPGLTPADI--RDALRS 248
>gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain,
uncharacterized subfamily 13. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 285
Score = 43.1 bits (102), Expect = 1e-04
Identities = 21/49 (42%), Positives = 23/49 (46%)
Query: 31 SNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLT 79
NG P++ TT G GTS AAP AGV AL NP LT
Sbjct: 226 VNGDGYPDSNTGTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLT 274
>gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain,
uncharacterized subfamily 15. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 242
Score = 42.7 bits (101), Expect = 1e-04
Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 23 SSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRD 82
+ +T G + G YG + SGTS A+P AAGV AL L ANP LT +
Sbjct: 182 GVGIWTT---GTGRGSAGDYPGGGYG----SFSGTSFASPVAAGVAALILSANPNLTPAE 234
Query: 83 I 83
+
Sbjct: 235 V 235
>gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family
domain in Vpr-like proteins. The maturation of the
peptide antibiotic (lantibiotic) subtilin in Bacillus
subtilis ATCC 6633 includes posttranslational
modifications of the propeptide and proteolytic cleavage
of the leader peptide. Vpr was identified as one of the
proteases, along with WprA, that are capable of
processing subtilin. Asp, Ser, His triadPeptidases S8
or Subtilases are a serine endo- and exo-peptidase clan.
They have an Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of subtilases may be enhanced by
calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity. Some
members of this clan contain disulfide bonds. These
enzymes can be intra- and extracellular, some function
at extreme temperatures and pH values.
Length = 295
Score = 40.4 bits (95), Expect = 8e-04
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 8 SAINDGQNAHYDESCSSTLASTFSNGAKDPN------------TGVATTDLYGKCTTTHS 55
SAI G + D + + T+ + S G + ++T G S
Sbjct: 174 SAITVGASTVADVAEADTVGPSSSRGPPTSDSAIKPDIVAPGVDIMSTAPGSGTGYARMS 233
Query: 56 GTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSK 92
GTS AAP AG AL +A+P + I+ + T+K
Sbjct: 234 GTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAK 270
>gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain,
uncharacterized subfamily 1. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 264
Score = 39.9 bits (94), Expect = 0.001
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 55 SGTSAAAPEAAGVFALALEANPQLTWRDI 83
SGTS A P +G AL L+ANP LT ++
Sbjct: 227 SGTSMATPHVSGAIALLLQANPILTPDEV 255
>gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family
domain in Subtilisin proteins. This group is composed
of many different subtilisins: Pro-TK-subtilisin,
subtilisin Carlsberg, serine protease Pb92 subtilisin,
and BPN subtilisins just to name a few.
Pro-TK-subtilisin is a serine protease from the
hyperthermophilic archaeon Thermococcus kodakaraensis
and consists of a signal peptide, a propeptide, and a
mature domain. TK-subtilisin is matured from
pro-TK-subtilisin upon autoprocessing and degradation of
the propeptide. Unlike other subtilisins though, the
folding of the unprocessed form of pro-TK-subtilisin is
induced by Ca2+ binding which is almost completed prior
to autoprocessing. Ca2+ is required for activity unlike
the bacterial subtilisins. The propeptide is not
required for folding of the mature domain unlike the
bacterial subtilases because of the stability produced
from Ca2+ binding. Subtilisin Carlsberg is extremely
similar in structure to subtilisin BPN'/Novo thought it
has a 30% difference in amino acid sequence. The
substrate binding regions are also similar and 2
possible Ca2+ binding sites have been identified
recently. Subtilisin Carlsberg possesses the highest
commercial importance as a proteolytic additive for
detergents. Serine protease Pb92, the serine protease
from the alkalophilic Bacillus strain PB92, also
contains two calcium ions and the overall folding of
the polypeptide chain closely resembles that of the
subtilisins. Members of the peptidases S8 and S35 clan
include endopeptidases, exopeptidases and also a
tripeptidyl-peptidase. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The S53
family contains a catalytic triad Glu/Asp/Ser. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 229
Score = 39.4 bits (93), Expect = 0.001
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQH 85
P + +T SGTS A P AGV AL P+LT ++
Sbjct: 177 PGVDILSTYPNNDYAYL-SGTSMATPHVAGVAALVWSKRPELTNAQVRQ 224
>gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like,
Peptidase S8 family domain in Autotransporter serine
proteases. Autotransporter serine proteases belong to
Peptidase S8 or Subtilase family. Subtilases, or
subtilisin-like serine proteases, have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure (an example of convergent evolution).
Autotransporters are a superfamily of outer
membrane/secreted proteins of gram-negative bacteria.
The presence of these subtilisin-like domains in these
autotransporters are may enable them to be
auto-catalytic and may also serve to allow them to act
as a maturation protease cleaving other outer membrane
proteins at the cell surface.
Length = 267
Score = 39.6 bits (93), Expect = 0.001
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 33 GAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTS 91
G +T + YG SGTS AAP +G AL + P LT ++ T+LT+
Sbjct: 212 GENIYSTDPDGGNGYG----RVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQ-TLLTT 265
>gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine
protease mycosin. Members of this family are
subtilisin-related serine proteases, found strictly in
the Actinobacteria and associated with type VII
secretion operons. The designation mycosin is used for
members from Mycobacterium [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair].
Length = 350
Score = 38.8 bits (91), Expect = 0.003
Identities = 17/58 (29%), Positives = 23/58 (39%)
Query: 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRN 94
P + + G T SGTS AAP +G AL P LT ++ T+
Sbjct: 205 PGENIVSLSPGGDGLATTSGTSFAAPFVSGTAALVRSRFPDLTAAQVRRRIEATADHP 262
>gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family
domain in BacillopeptidaseF-like proteins. Bacillus
subtilis produces and secretes proteases and other types
of exoenzymes at the end of the exponential phase of
growth. The ones that make up this group is known as
bacillopeptidase F, encoded by bpr, a serine protease
with high esterolytic activity which is inhibited by
PMSF. Like other members of the peptidases S8 family
these have a Asp/His/Ser catalytic triad similar to that
found in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. The stability of these enzymes may be enhanced
by calcium, some members have been shown to bind up to 4
ions via binding sites with different affinity.
Length = 264
Score = 37.7 bits (88), Expect = 0.005
Identities = 16/24 (66%), Positives = 16/24 (66%)
Query: 55 SGTSAAAPEAAGVFALALEANPQL 78
SGTS AAP AGV AL ANP L
Sbjct: 225 SGTSMAAPHVAGVAALLWSANPSL 248
>gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family
domain in ProteinaseK-like proteins. The peptidase S8
or Subtilase clan of proteases have a Asp/His/Ser
catalytic triad that is not homologous to trypsin. This
CD contains several members of this clan including:
PCSK9 (Proprotein convertase subtilisin/kexin type 9),
Proteinase_K, Proteinase_T, and other subtilisin-like
serine proteases. PCSK9 posttranslationally regulates
hepatic low-density lipoprotein receptors (LDLRs) by
binding to LDLRs on the cell surface, leading to their
degradation. The binding site of PCSK9 has been
localized to the epidermal growth factor-like repeat A
(EGF-A) domain of the LDLR. Characterized Proteinases K
are secreted endopeptidases with a high degree of
sequence conservation. Proteinases K are not
substrate-specific and function in a wide variety of
species in different pathways. It can hydrolyze keratin
and other proteins with subtilisin-like specificity. The
number of calcium-binding motifs found in these differ.
Proteinase T is a novel proteinase from the fungus
Tritirachium album Limber. The amino acid sequence of
proteinase T as deduced from the nucleotide sequence is
about 56% identical to that of proteinase K.
Length = 255
Score = 37.5 bits (88), Expect = 0.006
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
T T SGTS AAP AG+ A L P L+
Sbjct: 212 ATATLSGTSMAAPHVAGLAAYLLSLGPDLS 241
>gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in
Streptococcal C5a peptidases. Streptococcal C5a
peptidase (SCP), is a highly specific protease and
adhesin/invasin. The subtilisin-like protease domain is
located at the N-terminus and contains a
protease-associated domain inserted into a loop. There
are three fibronectin type III (Fn) domains at the
C-terminus. SCP binds to integrins with the help of
Arg-Gly-Asp motifs which are thought to stabilize
conformational changes required for substrate binding.
Peptidases S8 or Subtilases are a serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 346
Score = 36.1 bits (84), Expect = 0.017
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 55 SGTSAAAPEAAGVFALALEA----NPQLTWRDIQHLT 87
SGTS A+P AG AL + P+L+ ++ L
Sbjct: 272 SGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLV 308
>gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain,
uncharacterized subfamily 12. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 297
Score = 35.8 bits (83), Expect = 0.022
Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 30 FSNGAKDPNT-------GVATTD-LYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWR 81
FS A N GV G + SGTS A P AGV AL EA P+ R
Sbjct: 202 FSAVANFSNGEVDIAAPGVDIVSAAPGGGYRSMSGTSMATPHVAGVAALWAEALPKAGGR 261
Query: 82 DI 83
+
Sbjct: 262 AL 263
>gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family
domain in Subtilisin_Novo-like proteins. Subtilisins
are a group of alkaline proteinases originating from
different strains of Bacillus subtilis. Novo is one of
the strains that produced enzymes belonging to this
group. The enzymes obtained from the Novo and BPN'
strains are identical. The Carlsburg and Novo
subtilisins are thought to have arisen from a common
ancestral protein. They have similar peptidase and
esterase activities, pH profiles, catalyze
transesterification reactions, and are both inhibited by
diispropyl fluorophosphate, though they differ in 85
positions in the amino acid sequence. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser with an additional acidic residue Asp in the
oxyanion hole, similar to that of subtilisin.. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values.
Length = 291
Score = 35.8 bits (83), Expect = 0.023
Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 6 INSAINDGQNAHYDESCSSTLASTFSN-GAKD-----PNTGVATT---DLYGKCTTTHSG 56
N+ I G ++ E+ L + FSN G K+ P + +T + Y T SG
Sbjct: 203 ANNFITVGASSKKYEN---NLVANFSNYGKKNVDVFAPGERIYSTTPDNEY----ETDSG 255
Query: 57 TSAAAPEAAGVFALALEANPQLTWRDIQHL 86
TS AAP +GV AL P LT ++++ +
Sbjct: 256 TSMAAPVVSGVAALIWSYYPNLTAKEVKQI 285
>gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain,
uncharacterized subfamily 6. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 254
Score = 35.6 bits (82), Expect = 0.026
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 52 TTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTS 91
T SGTS AAP AGV AL A+P L+ I+ LT
Sbjct: 214 TRLSGTSMAAPHVAGVAALLAAAHPDLSPEQIK--DALTE 251
>gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain,
uncharacterized subfamily 5. gap in seq This family is
a member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 312
Score = 35.7 bits (83), Expect = 0.026
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 55 SGTSAAAPEAAGVFALALEA-NPQLTWRDIQHLTVLTSK 92
SGTS A P AG AL ++A + +L+ +++ L T+K
Sbjct: 228 SGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAK 266
>gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational
modification, protein turnover, chaperones].
Length = 508
Score = 35.3 bits (80), Expect = 0.036
Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 2 WTISINSAINDGQN-AHYDESCSSTLASTFSNGAK-DPNTGVATTDLYGKCTTTHSGTSA 59
+ A++ A + S T + G + V T G T SGTS
Sbjct: 304 PNVIAVGALDLSDTVASFSNDGSPTGVDIAAPGVNILSLSAVNTLPGDGADYVTLSGTSM 363
Query: 60 AAPEAAGVFALALEANPQLTWRD 82
AAP +GV AL L ANP
Sbjct: 364 AAPHVSGVAALVLSANPNELTPA 386
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in
CspA-like proteins. GSP (germination-specific protease)
converts the spore peptidoglycan hydrolase (SleC)
precursor to an active enzyme during germination of
Clostridium perfringens S40 spores. Analysis of an
enzyme fraction of GSP showed that it was composed of a
gene cluster containing the processed forms of products
of cspA, cspB, and cspC which are positioned in a tandem
array just upstream of the 5' end of sleC. The amino
acid sequences deduced from the nucleotide sequences of
the csp genes showed significant similarity and showed a
high degree of homology with those of the catalytic
domain and the oxyanion binding region of
subtilisin-like serine proteases. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 455
Score = 34.9 bits (81), Expect = 0.058
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 40 GV-ATTDLYGKCTTTHSGTSAAAPEAAGVFALALEAN------PQLTWRDIQHLTVLTSK 92
GV T G TT SGTS AA AG AL L+ P L I+ + ++
Sbjct: 381 GVNILTASPGGGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGAR 440
Query: 93 RN 94
R
Sbjct: 441 RR 442
>gnl|CDD|173788 cd04056, Peptidases_S53, Peptidase domain in the S53 family.
Members of the peptidases S53 (sedolisin) family include
endopeptidases and exopeptidases sedolisin, kumamolysin,
and (PSCP) Pepstatin-insensitive Carboxyl Proteinase.
The S53 family contains a catalytic triad Glu/Asp/Ser
with an additional acidic residue Asp in the oxyanion
hole, similar to that of Asn in subtilisin. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. Some members of
this clan contain disulfide bonds. These enzymes can be
intra- and extracellular, some function at extreme
temperatures and pH values. Characterized sedolisins
include Kumamolisin, an extracellular calcium-dependent
thermostable endopeptidase from Bacillus. The enzyme is
synthesized with a 188 amino acid N-terminal preprotein
region which is cleaved after the extraction into the
extracellular space with low pH. One kumamolysin
paralog, kumamolisin-As, is believed to be a
collagenase. TPP1 is a serine protease that functions as
a tripeptidyl exopeptidase as well as an endopeptidase.
Less is known about PSCP from Pseudomonas which is
thought to be an aspartic proteinase.
Length = 361
Score = 33.8 bits (78), Expect = 0.12
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 36 DPNTGVATTDLYGKCTTTH-SGTSAAAPEAAGVFALALEAN 75
DP TG + GTSAAAP AG+ AL +A
Sbjct: 261 DPGTGYL---VVVNGQWYLVGGTSAAAPLFAGLIALINQAR 298
>gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain,
uncharacterized subfamily 4. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 239
Score = 33.0 bits (76), Expect = 0.15
Identities = 16/50 (32%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86
P V G SGTS AAP AL L+A+P L
Sbjct: 172 PGVDVWVAAPGGG-YRYVSGTSFAAPFVTAALALLLQASPLAPDDARARL 220
>gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in
Kp43 proteases. Kp43 proteases are members of the
peptidase S8 or Subtilase clan of proteases. They have
an Asp/His/Ser catalytic triad similar to that found in
trypsin-like proteases, but do not share their
three-dimensional structure (an example of convergent
evolution). Kp43 is topologically similar to kexin and
furin both of which are proprotein convertases, but
differ in amino acids sequence and the position of its
C-terminal barrel. Kp43 has 3 Ca2+ binding sites that
differ from the corresponding sites in the other known
subtilisin-like proteases. KP-43 protease is known to
be an oxidation-resistant protease when compared with
the other subtilisin-like proteases.
Length = 293
Score = 32.7 bits (75), Expect = 0.21
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 28 STFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEA 74
S + G + Y T+ SGTS A P AG AL +
Sbjct: 225 GILSARSGGGGIGDTSDSAY----TSKSGTSMATPLVAGAAALLRQY 267
>gnl|CDD|240338 PTZ00262, PTZ00262, subtilisin-like protease; Provisional.
Length = 639
Score = 33.0 bits (75), Expect = 0.24
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 9/83 (10%)
Query: 4 ISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATT---DLYGKCTTTHSGTSAA 60
I++++ I D +N Y S +S ++ + A P T + +T + Y K +GTS A
Sbjct: 506 ITVSNLIKD-KNNQYSLSPNSFYSAKYCQLAA-PGTNIYSTFPKNSYRKL----NGTSMA 559
Query: 61 APEAAGVFALALEANPQLTWRDI 83
AP A + +L L NP L++ ++
Sbjct: 560 APHVAAIASLILSINPSLSYEEV 582
>gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8
family domain in Lantiobiotic (lanthionine-containing
antibiotics) specific proteases. Lantiobiotic
(lanthionine-containing antibiotics) specific proteases
are very similar in structure to serine proteases.
Lantibiotics are ribosomally synthesised antimicrobial
agents derived from ribosomally synthesised peptides
with antimicrobial activities against Gram-positive
bacteria. The proteases that cleave the N-terminal
leader peptides from lantiobiotics include: epiP, nsuP,
mutP, and nisP. EpiP, from Staphylococcus, is thought
to cleave matured epidermin. NsuP, a dehydratase from
Streptococcus and NisP, a membrane-anchored
subtilisin-like serine protease from Lactococcus cleave
nisin. MutP is highly similar to epiP and nisP and is
thought to process the prepeptide mutacin III of S.
mutans. Members of the peptidases S8 (subtilisin and
kexin) and S53 (sedolisin) clan include endopeptidases
and exopeptidases. The S8 family has an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. Serine acts
as a nucleophile, aspartate as an electrophile, and
histidine as a base. The S53 family contains a catalytic
triad Glu/Asp/Ser with an additional acidic residue Asp
in the oxyanion hole, similar to that of subtilisin.
The serine residue here is the nucleophilic equivalent
of the serine residue in the S8 family, while glutamic
acid has the same role here as the histidine base.
However, the aspartic acid residue that acts as an
electrophile is quite different. In S53 the it follows
glutamic acid, while in S8 it precedes histidine. The
stability of these enzymes may be enhanced by calcium,
some members have been shown to bind up to 4 ions via
binding sites with different affinity. There is a great
diversity in the characteristics of their members: some
contain disulfide bonds, some are intracellular while
others are extracellular, some function at extreme
temperatures, and others at high or low pH values.
Length = 294
Score = 32.3 bits (74), Expect = 0.26
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
GTS AAP+ +G AL ++ NP
Sbjct: 253 GYAYMYGTSLAAPKVSGALALIIDKNPLKK 282
>gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain,
uncharacterized subfamily 3. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 307
Score = 31.8 bits (73), Expect = 0.41
Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 55 SGTSAAAPEAAGVFALALEANPQLTW 80
SGTS A+P AGV AL A+P W
Sbjct: 270 SGTSMASPHVAGVAALLKSAHP--DW 293
>gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain
in Thermitase-like proteins. Thermitase is a
non-specific, trypsin-related serine protease with a
very high specific activity. It contains a subtilisin
like domain. The tertiary structure of thermitase is
similar to that of subtilisin BPN'. It contains a
Asp/His/Ser catalytic triad. Members of the peptidases
S8 (subtilisin and kexin) and S53 (sedolisin) clan
include endopeptidases and exopeptidases. The S8 family
has an Asp/His/Ser catalytic triad similar to that found
in trypsin-like proteases, but do not share their
three-dimensional structure and are not homologous to
trypsin. Serine acts as a nucleophile, aspartate as an
electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic
acid residue that acts as an electrophile is quite
different. In S53 the it follows glutamic acid, while
in S8 it precedes histidine. The stability of these
enzymes may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 260
Score = 31.8 bits (73), Expect = 0.42
Identities = 12/23 (52%), Positives = 12/23 (52%)
Query: 55 SGTSAAAPEAAGVFALALEANPQ 77
SGTS A P AGV AL P
Sbjct: 221 SGTSMATPHVAGVAALLYSQGPL 243
>gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain,
uncharacterized subfamily 9. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 261
Score = 31.1 bits (71), Expect = 0.73
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 24/103 (23%)
Query: 6 INSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYG----------------K 49
+NSA N+G + + S GA D N A+ G
Sbjct: 151 VNSAGNEGSTQWKGIGAPADAENVLSVGAVDANGNKASFSSIGPTADGRLKPDVMALGTG 210
Query: 50 CTTTH--------SGTSAAAPEAAGVFALALEANPQLTWRDIQ 84
+ +GTS + P AG+ A +A+P T I+
Sbjct: 211 IYVINGDGNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIK 253
>gnl|CDD|173817 cd07492, Peptidases_S8_8, Peptidase S8 family domain,
uncharacterized subfamily 8. This family is a member of
the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 222
Score = 29.6 bits (67), Expect = 1.7
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 51 TTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86
T SG S AAP G+ AL L P + D++ L
Sbjct: 181 YLTVSGNSFAAPHVTGMVALLLSEKPDIDANDLKRL 216
>gnl|CDD|234891 PRK01033, PRK01033, imidazole glycerol phosphate synthase subunit
HisF; Provisional.
Length = 258
Score = 29.9 bits (68), Expect = 1.8
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 4 ISINSAINDGQNAHYDESCSSTLASTFSNGAKDP---NTGVATTDLYGKCTTTHSGTSAA 60
I +NS DG YD L +F N K P G + D + G AA
Sbjct: 169 ILLNSIDRDGTMKGYD----LELLKSFRNALKIPLIALGGAGSLD-DIVEAILNLGADAA 223
Query: 61 APEAAGVF 68
A A +F
Sbjct: 224 A--AGSLF 229
>gnl|CDD|227010 COG4664, FcbT3, TRAP-type mannitol/chloroaromatic compound
transport system, large permease component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 447
Score = 30.0 bits (68), Expect = 2.0
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 57 TSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFC 98
T A A G LAL AN +L W+ ++ T+K S+
Sbjct: 258 TEGGAVGAVGALLLAL-ANGRLNWQMVKQALDATAKLTSMVL 298
>gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family
domain in Fervidolysin. Fervidolysin found in
Fervidobacterium pennivorans is an extracellular
subtilisin-like keratinase. It is contains a signal
peptide, a propeptide, and a catalytic region. The
tertiary structure of fervidolysin is similar to that of
subtilisin. It contains a Asp/His/Ser catalytic triad
and is a member of the peptidase S8 (subtilisin and
kexin) family. The catalytic triad is similar to that
found in trypsin-like proteases, but it does not share
their three-dimensional structure and are not homologous
to trypsin. Serine acts as a nucleophile, aspartate as
an electrophile, and histidine as a base. The S53 family
contains a catalytic triad Glu/Asp/Ser with an
additional acidic residue Asp in the oxyanion hole,
similar to that of subtilisin. The serine residue here
is the nucleophilic equivalent of the serine residue in
the S8 family, while glutamic acid has the same role
here as the histidine base. However, the aspartic acid
residue that acts as an electrophile is quite different.
In S53, it follows glutamic acid, while in S8 it
precedes histidine. The stability of these enzymes may
be enhanced by calcium; some members have been shown to
bind up to 4 ions via binding sites with different
affinity. There is a great diversity in the
characteristics of their members: some contain disulfide
bonds, some are intracellular while others are
extracellular, some function at extreme temperatures,
and others at high or low pH values.
Length = 273
Score = 29.4 bits (66), Expect = 2.5
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 55 SGTSAAAPEAAGVFALALEANPQ 77
SGTS AAP +GV AL L P
Sbjct: 237 SGTSMAAPHVSGVAALVLSKFPD 259
>gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain,
uncharacterized subfamily 14. This family is a member
of the Peptidases S8 or Subtilases serine endo- and
exo-peptidase clan. They have an Asp/His/Ser catalytic
triad similar to that found in trypsin-like proteases,
but do not share their three-dimensional structure and
are not homologous to trypsin. The stability of
subtilases may be enhanced by calcium, some members have
been shown to bind up to 4 ions via binding sites with
different affinity. Some members of this clan contain
disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 311
Score = 29.4 bits (66), Expect = 2.5
Identities = 18/47 (38%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 28 STFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEA 74
S GA D N DL+G GTS A P AG AL + A
Sbjct: 252 VLDSGGALDGN---EAFDLFG-------GTSMATPMTAGSAALVISA 288
>gnl|CDD|227943 COG5656, SXM1, Importin, protein involved in nuclear import
[Posttranslational modification, protein turnover,
chaperones].
Length = 970
Score = 29.8 bits (67), Expect = 2.6
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 10/83 (12%)
Query: 234 VELFLTSPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVSP--YILA 291
+++FL SP TR+ + + +N P + WG +P+ LL S ++
Sbjct: 94 LDVFLYSPEVTRTALNAILVNI-----FSEDKP---SDLWGLFPKAANLLRSSEANHVYT 145
Query: 292 GLPMLFIINLTITWALTARRVLL 314
GL L + W +V +
Sbjct: 146 GLLCLEELFKAYRWKYNDEQVDI 168
>gnl|CDD|221510 pfam12288, CsoS2_M, Carboxysome shell peptide mid-region. This
domain family is found in bacteria and eukaryotes, and
is approximately 430 amino acids in length. This family
is annotated frequently as a carboxysome shell peptide,
however there is little publication to confirm this.
Length = 424
Score = 28.6 bits (64), Expect = 5.0
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 9/59 (15%)
Query: 47 YGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI-QHLTVLTSKRNSLFCCSTRGS 104
+GK T TSAA+ +A + NP L+ R++ Q + L SK + + +
Sbjct: 17 HGKSATGKQSTSAAS--------VARQGNPDLSSRELAQRVRELRSKSGATGKKRSGVT 67
>gnl|CDD|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase. This enzyme
catalyzes the final step in the breakdown of tyrosine or
phenylalanine to fumarate and acetoacetate [Energy
metabolism, Amino acids and amines].
Length = 415
Score = 28.3 bits (63), Expect = 5.8
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 152 NHLFGFGVLDAGAMVALAKQWKTVPARYHCEAGSV 186
H G++ G AL WK +P YH A S+
Sbjct: 131 QHATNVGIMFRGKENALLPNWKHLPVGYHGRASSI 165
>gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family
domain in Subtilisin-like proteins. This family is a
member of the Peptidases S8 or Subtilases serine endo-
and exo-peptidase clan. They have an Asp/His/Ser
catalytic triad similar to that found in trypsin-like
proteases, but do not share their three-dimensional
structure and are not homologous to trypsin. The
stability of subtilases may be enhanced by calcium, some
members have been shown to bind up to 4 ions via binding
sites with different affinity. Some members of this clan
contain disulfide bonds. These enzymes can be intra- and
extracellular, some function at extreme temperatures and
pH values.
Length = 291
Score = 28.0 bits (63), Expect = 7.7
Identities = 17/43 (39%), Positives = 18/43 (41%), Gaps = 9/43 (20%)
Query: 32 NGAKDPNTGVATTDLYGKCT---------TTHSGTSAAAPEAA 65
N A DP+ A DL T T GTS AAP AA
Sbjct: 222 NLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGGTSFAAPLAA 264
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.131 0.412
Gapped
Lambda K H
0.267 0.0653 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,235,098
Number of extensions: 1493047
Number of successful extensions: 1181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1176
Number of HSP's successfully gapped: 46
Length of query: 331
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 234
Effective length of database: 6,635,264
Effective search space: 1552651776
Effective search space used: 1552651776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)