RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13851
(331 letters)
>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
SCOP: b.18.1.20 c.41.1.1
Length = 471
Score = 228 bits (583), Expect = 1e-71
Identities = 117/286 (40%), Positives = 157/286 (54%), Gaps = 45/286 (15%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
++T+SI+SA G Y E+CSSTLA+T+S+G ++ V TTDL KCT +H+GTSA+
Sbjct: 205 IYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIV-TTDLRQKCTESHTGTSAS 263
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAG+ AL LEAN LTWRD+QHL V TSK L
Sbjct: 264 APLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNA---------------------- 301
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPARYH 180
W NGVG + +H +G+G+LDAGAMVALA+ W TV +
Sbjct: 302 -------------------DDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTTVAPQRK 342
Query: 181 CEAGSVKQVTEIPSSRSILLKIKTNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTS 240
C + + +I + + AC GE ++ +EHVQA +TL+ RG + + L S
Sbjct: 343 CIVEILVEPKDIGKRLEV--RKAVTACLGEPNHITRLEHVQARLTLSYNRRGDLAIHLIS 400
Query: 241 PMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVS 286
PMGTRS +L+ R +D DGF W FMTTH+W E P G W+LE+
Sbjct: 401 PMGTRSTLLAARPHDYS-ADGFNDWAFMTTHSWDEDPAGEWVLEIE 445
>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
like protease, serine protease; HET: NDG; 1.90A
{Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
1r64_A* 1ot5_A*
Length = 503
Score = 220 bits (562), Expect = 3e-68
Identities = 78/287 (27%), Positives = 133/287 (46%), Gaps = 45/287 (15%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTTTHSGTSAA 60
+++I+I + + + Y E CS+ +A T+S+G + ++D+ G+C+ +H GTSAA
Sbjct: 218 IYSITIGAIDHKDLHPPYSEGCSAVMAVTYSSG---SGEYIHSSDINGRCSNSHGGTSAA 274
Query: 61 APEAAGVFALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKLTWRDI 120
AP AAGV+ L LEANP LTWRD+Q+L++L++
Sbjct: 275 APLAAGVYTLLLEANPNLTWRDVQYLSILSAVG--------------------------- 307
Query: 121 QHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLFGFGVLDAGAMVALAKQWKTVPARYH 180
+ W + +G +++H +GFG +DA ++ ++K W+ V A+
Sbjct: 308 -------------LEKNADGDWRDSAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTW 354
Query: 181 CEAGSVKQVTEIPSSRSILLKIKT-NACEGEDTQVSYVEHVQAVITLNATTRGAVELFLT 239
++ S+ L + T + +D +EHV + ++ RG + L
Sbjct: 355 FYLPTLYVSQSTNSTEETLESVITISEKSLQDANFKRIEHVTVTVDIDTEIRGTTTVDLI 414
Query: 240 SPMGTRSMILSKRINDNDRRDGFTKWPFMTTHTWGEYPQGTWLLEVS 286
SP G S + R D +GF W FM+ WGE G W ++V
Sbjct: 415 SPAGIISNLGVVRPRDVS-SEGFKDWTFMSVAHWGENGVGDWKIKVK 460
>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
sobria} PDB: 3hjr_A
Length = 600
Score = 213 bits (542), Expect = 2e-64
Identities = 63/323 (19%), Positives = 109/323 (33%), Gaps = 60/323 (18%)
Query: 1 MWTISINSAINDGQNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYG------------ 48
W + +++ DG + Y S+ S + TTDL G
Sbjct: 253 FWNLVVSALNADGVRSSYSSVGSNIFLSATGGEYGTDTPAMVTTDLPGCDMGYNRTDDPS 312
Query: 49 --------------KCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRN 94
+GTS+A P +G AL + A P L+ RD++ L ++ R
Sbjct: 313 TNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRV 372
Query: 95 SLFCCSTRGSWCVRSGLGSKLTWRDIQHLTVLTSKRNSLFDAKGRFHWTMNGVGLEFNHL 154
S+ +G + + W N G+ F+
Sbjct: 373 DAKHQPVMVSYTSSTGKVRDVKGLE---------------------GWERNAAGMWFSPT 411
Query: 155 FGFGVLDAGAMVALAKQWKTVPARYHCEAGSVKQVTEIPSSRSILLKIKTNACEGEDTQV 214
+GFG++D + LA + +P + + + +
Sbjct: 412 YGFGLIDVNKALELAANHQPLPPLVQLPWQKINVTGSAAAIADV--GNSPTSSTTRIATP 469
Query: 215 SYVEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRINDNDRRD-----------GFT 263
VE VQ +++L+ + + L SP GTRS++LS + + G
Sbjct: 470 LTVEAVQVMVSLDHQRLPDLLIELVSPAGTRSILLSPFNSLVGQSLDQQQLGFVRTKGLR 529
Query: 264 KWPFMTTHTWGEYPQGTWLLEVS 286
++ +GE QGTW LEV+
Sbjct: 530 DMRMLSNKFYGESAQGTWRLEVT 552
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 47.5 bits (114), Expect = 2e-06
Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 21/96 (21%)
Query: 8 SAINDGQNAHYDE-----SCSSTLA----------STFSN-GAK-D---PNTGVATTDLY 47
+A N G + + S +A ++FS+ GA+ + P GV +T
Sbjct: 151 AAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPT 210
Query: 48 GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
T +GTS A+P AG AL L +P L+ +
Sbjct: 211 NT-YATLNGTSMASPHVAGAAALILSKHPNLSASQV 245
>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus}
SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A
1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A
1q5p_A* 1st3_A 1c9n_A*
Length = 269
Score = 47.5 bits (114), Expect = 2e-06
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 17/92 (18%)
Query: 8 SAINDGQNA-HYDESCSSTLA----------STFSN-GAK-D---PNTGVATTDLYGKCT 51
++ N G + Y ++ +A ++FS GA D P V +T
Sbjct: 150 ASGNSGAGSISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGST-Y 208
Query: 52 TTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
+ +GTS A P AG AL + NP + I
Sbjct: 209 ASLNGTSMATPHVAGAAALVKQKNPSWSNVQI 240
>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert
beta barrel domain hydrolase; HET: PMS; 1.40A
{Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*
Length = 441
Score = 47.8 bits (114), Expect = 3e-06
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 16/92 (17%)
Query: 4 ISINSAINDGQNAH--YDESCSSTLASTFSNGAKDPNTGVATTDLYGKCTT--------- 52
I +++ G D + T+ S + D TG+A G+ TT
Sbjct: 307 IVYSNSALPGLQNPFLVDANSDITVPS----VSVDRATGLALKAKLGQSTTVSNQGNQDY 362
Query: 53 -THSGTSAAAPEAAGVFALALEANPQLTWRDI 83
++GTS A P +GV L +P+ + +
Sbjct: 363 EYYNGTSMATPHVSGVATLVWSYHPECSASQV 394
Score = 27.4 bits (61), Expect = 7.8
Identities = 5/41 (12%), Positives = 6/41 (14%)
Query: 47 YGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLT 87
T G S + L T
Sbjct: 214 GRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASAT 254
>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}
Length = 347
Score = 47.4 bits (113), Expect = 3e-06
Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 12 DGQNAHYDESCSSTLASTFSN-GAKD-----PNTGVATTDLYGKCTTTHSGTSAAAPEAA 65
+ S G P + K T T SGTS A +
Sbjct: 222 AQYRKGETPVLHGGGIT-GSRFGNNWVDIAAPGQNITFLRPDAK-TGTGSGTSEATAIVS 279
Query: 66 GVFALALEANPQLTWRDI 83
GV A NP+ T ++
Sbjct: 280 GVLAAMTSCNPRATATEL 297
>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A
{Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E*
1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E*
1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E*
1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...
Length = 281
Score = 46.4 bits (111), Expect = 5e-06
Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 8 SAINDGQNAHYDE-----SCSSTLA----------STFSN-GAK-D---PNTGVATTDLY 47
+A N+G + S +A ++FS+ G + D P + +T
Sbjct: 152 AAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPG 211
Query: 48 GKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
K ++GTS A+P AG AL L +P T +
Sbjct: 212 NK-YGAYNGTSMASPHVAGAAALILSKHPNWTNTQV 246
>4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase,
patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A
Length = 360
Score = 45.2 bits (107), Expect = 2e-05
Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 19/91 (20%)
Query: 6 INSAINDGQNA-HYDESCSSTLA----------STFSN-GAKDPNTGVA-------TTDL 46
++ N+ + TLA FSN G + G+
Sbjct: 221 VSPTGNNSNESWCLPAVLPGTLAVGAAKVDGTPCHFSNWGGNNTKEGILAPGEEILGAQP 280
Query: 47 YGKCTTTHSGTSAAAPEAAGVFALALEANPQ 77
+ +GTS AAP G+ AL + Q
Sbjct: 281 CTEEPVRLTGTSMAAPVMTGISALLMSLQVQ 311
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 45.2 bits (107), Expect = 2e-05
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 38 NTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
+G + T GT+ A P AG+ AL L+A+P T +
Sbjct: 339 ASGTSMGQPINDYYTAAPGTAMATPHVAGIAALLLQAHPSWTPDKV 384
>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like
protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP:
c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*
Length = 310
Score = 44.2 bits (105), Expect = 3e-05
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 17/82 (20%)
Query: 18 YDESCSSTLASTFSN-----GAKDPNTGVATTDLY-----------GKCTTTHSGTSAAA 61
++ + +A +S+ A D ++ T SGTS A
Sbjct: 195 VQQNGTYRVAD-YSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWYNGGYNTISGTSMAT 253
Query: 62 PEAAGVFALALEANPQLTWRDI 83
P +G+ A NP L+ +
Sbjct: 254 PHVSGLAAKIWAENPSLSNTQL 275
>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase;
1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A
2zwo_A
Length = 395
Score = 44.4 bits (105), Expect = 3e-05
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 17/91 (18%)
Query: 8 SAINDGQN-----AHYDESCS-------STLASTFSNGAKD---PNTGVATTDLYGKCTT 52
++ N+G A Y E + +AS FSN + P + +T
Sbjct: 258 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIAS-FSNRQPEVSAPGVDILSTYPDDS-YE 315
Query: 53 THSGTSAAAPEAAGVFALALEANPQLTWRDI 83
T GT+ A P +GV AL A Q + +
Sbjct: 316 TLMGTAMATPHVSGVVALIQAAYYQKYGKIL 346
>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel,
hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1
PDB: 1wme_A 1wmf_A
Length = 434
Score = 44.2 bits (104), Expect = 3e-05
Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 4/68 (5%)
Query: 28 STFSNGAKDPNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLT 87
S S+ A D + Y GTS A P AG A E + +
Sbjct: 229 SARSSLAPDSSFWANHDSKY----AYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSL 284
Query: 88 VLTSKRNS 95
+ +
Sbjct: 285 LKAALIAG 292
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 42.9 bits (102), Expect = 7e-05
Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 19/92 (20%)
Query: 8 SAINDGQNA-HYDESCSSTLA----------STFSN-GAK-D---PNTGVATTDLYGKCT 51
+A N+G + S + +A ++FSN G D P + +T +
Sbjct: 161 AAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNR-Y 219
Query: 52 TTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
SGTS A+P AG+ AL +I
Sbjct: 220 AYMSGTSMASPHVAGLAALLASQGR--NNIEI 249
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 61/357 (17%), Positives = 100/357 (28%), Gaps = 128/357 (35%)
Query: 14 QNAHYDESCSSTLASTFSNGAKDPNTGVATTDLYG--KCTTTHSGT--SAAAPEAAGVFA 69
Q AHY + G +L K T HS +A A
Sbjct: 245 QLAHYVVTAKLL--------------GFTPGELRSYLKGATGHSQGLVTAVAIAETD--- 287
Query: 70 LALEANPQLTWRD-----IQHLTVLTSKRNSLFCCSTRG--------------SWCVRSG 110
+W + +TVL F R + +
Sbjct: 288 ---------SWESFFVSVRKAITVL-------FFIGVRCYEAYPNTSLPPSILEDSLENN 331
Query: 111 LGSK---LTWRDIQHLTVLT--SKRNSLFDAKGRFHWTMNGVGLEFN---HLFGFGVLDA 162
G L+ ++ V +K NS A + + L N +L V+ +
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE-----ISL-VNGAKNL----VV-S 380
Query: 163 G---AMVALAKQWKTVPARYHCEAGSVKQVTEIP-SSR----------------SILLKI 202
G ++ L + A + Q + IP S R S LL
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLD-----Q-SRIPFSERKLKFSNRFLPVASPFHSHLLV- 433
Query: 203 KTNACEGEDTQVSYVE--HVQAVITLNATTRGAVELFLTSPMGTRS---MILSKRINDND 257
+ +D + V I + T G+ +L + S + I+ +
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS-DLRVLSGSISERIVDCIIRLPVK--- 489
Query: 258 RRDGFTKWPFMTTHTWGEYPQGTWLLEVSPYILAGLPMLFIINLTITWALTARRVLL 314
W TT + T +L+ P +GL +L N T RV++
Sbjct: 490 -------WE-TTTQF-----KATHILDFGPGGASGLGVLTHRNKDGTGV----RVIV 529
>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide,
hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP:
c.41.1.1
Length = 671
Score = 42.8 bits (100), Expect = 1e-04
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 55 SGTSAAAPEAAGVFALALEANPQLTWRDIQHL 86
GTS AAP GV A+ L+ P I+ L
Sbjct: 378 QGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKL 409
>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A
{Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A
2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A
Length = 320
Score = 42.4 bits (100), Expect = 1e-04
Identities = 20/90 (22%), Positives = 35/90 (38%), Gaps = 15/90 (16%)
Query: 8 SAINDGQNA-HYDESCSSTLA----------STFSNGAKD---PNTGVATTDLYGKCTTT 53
++ N+G + Y + +A ++FSN + P + +T T
Sbjct: 183 ASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSNRQPEVSAPGVDILSTYPDDS-YET 241
Query: 54 HSGTSAAAPEAAGVFALALEANPQLTWRDI 83
GT+ A P +GV AL A Q + +
Sbjct: 242 LMGTAMATPHVSGVVALIQAAYYQKYGKIL 271
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 41.8 bits (99), Expect = 1e-04
Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 17/85 (20%)
Query: 8 SAINDGQNA-HYDESCSSTLA----------STFSNGAKD-----PNTGVATTDLYGKCT 51
+A N G A +Y S+ +A S+FS P + + +T
Sbjct: 160 AAGNAGNTAPNYPAYYSNAIAVASTDQNDNKSSFSTYGSWVDVAAPGSSIYSTYPTST-Y 218
Query: 52 TTHSGTSAAAPEAAGVFALALEANP 76
+ SGTS A P AGV L
Sbjct: 219 ASLSGTSMATPHVAGVAGLLASQGR 243
>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation,
psychrotrophic, subtilisin-like proteinase, depentent,
hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*
Length = 284
Score = 40.3 bits (95), Expect = 4e-04
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 47 YGKCTTTHSGTSAAAPEAAGVFALALEANPQLT 79
Y T SGTS A P AGV AL L+ N LT
Sbjct: 209 YDGGYKTISGTSMATPHVAGVAALYLQENNGLT 241
>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A
{Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A
Length = 340
Score = 40.1 bits (94), Expect = 6e-04
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 27/101 (26%)
Query: 11 NDGQNA--HYDESCSSTLA----------STFSNGAKD-----PNTGVATTDLYGKCT-- 51
N+ QNA + SC++ L+ ++FSN D P + +T G
Sbjct: 206 NENQNASNTWPTSCNNVLSVGATTSRGIRASFSNYGVDVDLAAPGQDILSTVDSGTRRPV 265
Query: 52 ----TTHSGTSAAAPEAAGVFALAL----EANPQLTWRDIQ 84
+ +GTS A P +GV AL + N LT +++
Sbjct: 266 SDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELK 306
>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL
receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}
Length = 692
Score = 40.4 bits (94), Expect = 7e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
C + SGTS AA AG+ A+ L A P+LT
Sbjct: 378 CFVSQSGTSQAAAHVAGIAAMMLSAEPELT 407
>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart
disease, hypercholest low density lipoprotein receptor,
autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens}
PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B
3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A
Length = 546
Score = 40.3 bits (94), Expect = 8e-04
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
C + SGTS AA AG+ A+ L A P+LT
Sbjct: 226 CFVSQSGTSQAAAHVAGIAAMMLSAEPELT 255
>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K,
subtilase, psychrotrophic, psychrophilic, hydrolase;
1.80A {Serratia SP}
Length = 278
Score = 39.5 bits (93), Expect = 8e-04
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
T T SGTS A+P AGV AL L+ NP L+
Sbjct: 216 ATNTISGTSMASPHVAGVAALYLDENPNLS 245
>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding,
inhibitor, hydrolase-hydro inhibitor complex; HET: PMS;
1.95A {Thermus aquaticus}
Length = 276
Score = 39.5 bits (93), Expect = 9e-04
Identities = 17/30 (56%), Positives = 18/30 (60%)
Query: 50 CTTTHSGTSAAAPEAAGVFALALEANPQLT 79
T T +GTS A P AGV AL LE NP T
Sbjct: 214 ATQTLNGTSMATPHVAGVAALYLEQNPSAT 243
>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease,
intracellular proteinase regulat; HET: CSX 1PE; 1.56A
{Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*
Length = 327
Score = 38.8 bits (91), Expect = 0.002
Identities = 22/98 (22%), Positives = 33/98 (33%), Gaps = 24/98 (24%)
Query: 8 SAINDGQNAHYDESCSS-----------------TLASTFSN-GAK-D---PNTGVATTD 45
+A N+G + L+ F+N + D P G+ +T
Sbjct: 180 AAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLRLSD-FTNTNEEIDIVAPGVGIKSTY 238
Query: 46 LYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDI 83
L SGT+ AAP AG AL + R +
Sbjct: 239 LDSG-YAELSGTAMAAPHVAGALALIINLAEDAFKRSL 275
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase,
hydrolase, phosphoprotein, protease; 3.14A {Drosophila
melanogaster}
Length = 1354
Score = 37.5 bits (86), Expect = 0.006
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 30 FSNGAKDPN-----TGVATTDLYGKCTTTH-SGTSAAAPEAAGVFALALEA----NPQLT 79
+G + +A+ + + +GTS AAP AG AL + N + +
Sbjct: 428 CIDGGQGVTVCAPGGAIASVPQFTMSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYS 487
Query: 80 WRDI 83
I
Sbjct: 488 PYSI 491
>3t41_A Epidermin leader peptide processing serine protea; structural
genomics, center for structural genomics of infec
diseases, csgid; 1.95A {Staphylococcus aureus} PDB:
3qfh_A
Length = 471
Score = 37.2 bits (86), Expect = 0.007
Identities = 7/30 (23%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 55 SGTSAAAPEAAGVFALALEA-NPQLTWRDI 83
+GT+ A P+ +G AL ++ + +
Sbjct: 404 AGTALATPKVSGALALIIDKYHLEKHPDKA 433
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 36.4 bits (85), Expect = 0.008
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 26/90 (28%)
Query: 8 SAINDGQNAHYDESCSSTLAST---FSNGAKDPNTGVATTDLYGKC-------------- 50
+A N+ +A + + AS + GA D ++ YG
Sbjct: 158 AAGNNNADA-----RNYSPASEPSVCTVGASDRYDRRSSFSNYGSVLDIFGPGTDILSTW 212
Query: 51 ----TTTHSGTSAAAPEAAGVFALALEANP 76
T + SGTS A P AG+ A +
Sbjct: 213 IGGSTRSISGTSMATPHVAGLAAYLMTLGK 242
>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET:
NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*
Length = 649
Score = 37.0 bits (85), Expect = 0.009
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSK 92
T + T L SGTS AAP AAG+ A+ A+P+ + I+ + T+
Sbjct: 405 FATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTAD 460
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 35.6 bits (83), Expect = 0.013
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 26/90 (28%)
Query: 8 SAINDGQNAHYDESCSSTLAST---FSNGAKDPNTGVATTDLYGKC-------------- 50
+A ND ++A +++ AS + GA D N +T YG+
Sbjct: 159 AAGNDNRDA-----ANTSPASEPTVCTVGATDSNDVRSTFSNYGRVVDIFAPGTSITSTW 213
Query: 51 ----TTTHSGTSAAAPEAAGVFALALEANP 76
T T SGTS A P AG+ A
Sbjct: 214 IGGRTNTISGTSMATPHIAGLAAYLFGLEG 243
>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus
pyogenes} PDB: 3eif_A*
Length = 926
Score = 34.6 bits (79), Expect = 0.047
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 55 SGTSAAAPEAAGVFALALEANPQL 78
SGTS +AP AG+ L +
Sbjct: 404 SGTSMSAPLVAGIMGLLQKQYETQ 427
>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET:
DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}
Length = 621
Score = 33.9 bits (77), Expect = 0.073
Identities = 11/59 (18%), Positives = 19/59 (32%)
Query: 37 PNTGVATTDLYGKCTTTHSGTSAAAPEAAGVFALALEANPQLTWRDIQHLTVLTSKRNS 95
P+ SGTS + P G+ NP + I+ + T+ +
Sbjct: 394 PSVAPVGGIRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMN 452
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.098
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 15/34 (44%)
Query: 42 ATTDLYGKCTTTHSGTSAAAPEAAGVFALALEAN 75
A+ LY A ++A ALA++A
Sbjct: 27 ASLKLY-------------ADDSAP--ALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 4.0
Identities = 52/366 (14%), Positives = 91/366 (24%), Gaps = 106/366 (28%)
Query: 19 DESCSSTLASTFSNGAKDPNTGVAT-----TDLYGKCTTTH-----SGTSAAAPEAAGVF 68
++ + F+ K + T TD TTTH + E +
Sbjct: 251 LNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
Query: 69 ALALEANPQLTWRDIQHLTVLTSKRNSLFCCSTRGSWCVRSGLGSKL-----TWRDIQHL 123
L+ Q L N S + + TW + +H+
Sbjct: 308 LKYLDC-------RPQDLPREVLTTNPRRL----------SIIAESIRDGLATWDNWKHV 350
Query: 124 ------TVLTSKRNSLFDAKGRFHWTMNGVGLEFNHLF-GFGVLDAGAMV---ALAKQWK 173
T++ S N L A E+ +F V A + L+ W
Sbjct: 351 NCDKLTTIIESSLNVLEPA-------------EYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 174 TVPARYHCEAGSVKQVTEIPSSRSILLK-IKTNACEGEDTQVSYVEHVQAVITLNATTRG 232
V V V S++ K K + + ++ L+ +
Sbjct: 398 DVIKS------DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 233 AVELFLTSPMGTRSMILSKRINDN----------------DRRDGFTKW----PFM---- 268
+ T L D +R F F+
Sbjct: 452 HYNIPKTFDSDD----LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI 507
Query: 269 --TTHTWGEYPQGTWLLEV----SPYILAGLPML-FIINLTITWALTARRVLLRDNH--- 318
+ W L+ PYI P ++N + + L+ +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 319 ---AMM 321
A+M
Sbjct: 568 LRIALM 573
>1uwk_A Urocanate hydratase; hydrolase, urocanase, imidazolonepropionate,
histidine metabolism, lyase; HET: NAD URO; 1.19A
{Pseudomonas putida} SCOP: e.51.1.1 PDB: 1w1u_A* 1uwl_A*
2v7g_A*
Length = 557
Score = 28.2 bits (62), Expect = 5.1
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 211 DTQVSYVEHVQAVITLNATTRGAVELFLTSPMGTRSMIL-SKRINDNDRRDGFTKWPFMT 269
D V + ++ TL + V +F T R +I S + + F +
Sbjct: 66 DKIVETLTRLEDDETLLVQSGKPVGVFKTHSNAPRVLIANSNLVPHWANWEHFNELDAKG 125
Query: 270 THTWGEYPQGTWLLEVSPYILAG 292
+G+ G+W+ S I+ G
Sbjct: 126 LAMYGQMTAGSWIYIGSQGIVQG 148
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 27.9 bits (62), Expect = 5.5
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 204 TNACEGEDTQVSYVEHVQAVITLNATTRGAVELFLTSPMGTRSMILSKRI 253
TN + + Y H + + + R + L++ +
Sbjct: 394 TNLDGEKTLSLPYWPHDVVRDSPDGLVGMPGGGRVAPEEAVRDVPLTREL 443
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 27.5 bits (61), Expect = 8.6
Identities = 16/91 (17%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 200 LKIKTNACEGEDTQVSYVEHVQAVITLNATTR---GAVE---LFLTSPMGTRSMILSKRI 253
+ A G+ + + + A+ + ++ R V+ L R+ +S R+
Sbjct: 361 VNALAKALAGQKDEALFSANAAALASRRSSPRVTNEGVQKAAAALKGSDHRRATNVSARL 420
Query: 254 NDNDRRDGFTKWPFMTTHTWGEYPQGTWLLE 284
+ ++ P + T T G +PQ L
Sbjct: 421 DA--QQKKLNL-PILPTTTIGSFPQTVELRR 448
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.131 0.412
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,927,066
Number of extensions: 279576
Number of successful extensions: 477
Number of sequences better than 10.0: 1
Number of HSP's gapped: 464
Number of HSP's successfully gapped: 47
Length of query: 331
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 237
Effective length of database: 4,077,219
Effective search space: 966300903
Effective search space used: 966300903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (25.6 bits)