BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy13852
         (78 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|B Chain B, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|C Chain C, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|D Chain D, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|E Chain E, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|F Chain F, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|G Chain G, Crystal Structure Of The Proprotein Convertase Furin
 pdb|1P8J|H Chain H, Crystal Structure Of The Proprotein Convertase Furin
          Length = 471

 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++
Sbjct: 115 GGVRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 173


>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
 pdb|1R64|B Chain B, The 2.2 A Crystal Structure Of Kex2 Protease In Complex
           With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid
           Inhibitor
          Length = 481

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 123 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 179


>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
 pdb|1OT5|B Chain B, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With
           A Peptidyl- Boronic Acid Inhibitor
          Length = 477

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 121 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 177


>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor.
 pdb|2ID4|B Chain B, The 1.9 A Structure Of Kex2 In Complex With An
           Ac-R-E-R-K-Chloromethyl Ketone Inhibitor
          Length = 503

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 130 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186


>pdb|2HZ7|A Chain A, Crystal Structure Of The Glutaminyl-Trna Synthetase From
           Deinococcus Radiodurans
          Length = 851

 Score = 32.7 bits (73), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 3   TITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVD 60
           TIT + +L ++   GR+   D P M  L     +G  P  +  ++A  G +   +TVD
Sbjct: 306 TITSKRKLRELVQAGRVSGWDDPRMPTLRAQRRLGVTPEAVRAFAAQIGVSRTNRTVD 363


>pdb|1DY2|A Chain A, Murine Collagen Alpha1(Xv), Endostatin Domain
          Length = 180

 Score = 26.2 bits (56), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 14  SHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTD 54
           S DGR  M D  +   ++   S  H   L+D Y  +W  TD
Sbjct: 98  SFDGRDVMTDPSWPQKVVWHGSNPHGVRLVDKYCEAWRTTD 138


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.133    0.396 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,390,305
Number of Sequences: 62578
Number of extensions: 83082
Number of successful extensions: 182
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 6
length of query: 78
length of database: 14,973,337
effective HSP length: 47
effective length of query: 31
effective length of database: 12,032,171
effective search space: 372997301
effective search space used: 372997301
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)