Query psy13852
Match_columns 78
No_of_seqs 108 out of 280
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 22:04:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13852.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13852hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3526|consensus 100.0 7.5E-29 1.6E-33 198.1 5.7 71 8-78 229-299 (629)
2 KOG3525|consensus 99.7 1.5E-18 3.2E-23 136.7 2.6 76 2-78 88-170 (431)
3 cd04059 Peptidases_S8_Protein_ 98.8 2.3E-08 5E-13 72.1 7.1 70 7-77 104-173 (297)
4 cd07496 Peptidases_S8_13 Pepti 97.7 9.5E-05 2E-09 53.7 5.5 64 8-77 92-166 (285)
5 cd07474 Peptidases_S8_subtilis 97.6 5.5E-05 1.2E-09 54.5 3.4 67 6-77 81-149 (295)
6 cd07483 Peptidases_S8_Subtilis 97.6 8.8E-05 1.9E-09 54.7 4.2 65 8-77 106-171 (291)
7 cd07481 Peptidases_S8_Bacillop 97.6 0.00019 4E-09 51.7 5.5 48 8-55 72-132 (264)
8 cd07497 Peptidases_S8_14 Pepti 97.5 0.00014 3E-09 55.0 4.8 55 8-62 86-151 (311)
9 cd04848 Peptidases_S8_Autotran 97.5 0.00017 3.8E-09 50.1 4.6 71 7-77 65-146 (267)
10 cd07493 Peptidases_S8_9 Peptid 97.5 0.00015 3.1E-09 52.0 4.3 70 7-77 65-147 (261)
11 cd07490 Peptidases_S8_6 Peptid 97.4 0.00013 2.9E-09 51.4 3.2 62 8-72 63-125 (254)
12 cd07487 Peptidases_S8_1 Peptid 97.4 0.00023 4.9E-09 50.1 4.2 68 7-77 65-138 (264)
13 cd07494 Peptidases_S8_10 Pepti 97.4 0.00035 7.6E-09 52.2 4.9 69 6-77 70-145 (298)
14 cd07473 Peptidases_S8_Subtilis 97.3 0.00033 7.2E-09 49.5 4.3 62 8-77 84-148 (259)
15 cd04843 Peptidases_S8_11 Pepti 97.3 0.00075 1.6E-08 50.0 6.1 75 2-77 59-142 (277)
16 cd07482 Peptidases_S8_Lantibio 96.9 0.0015 3.3E-08 46.7 4.4 50 8-57 70-121 (294)
17 cd07480 Peptidases_S8_12 Pepti 96.9 0.0013 2.8E-08 48.2 3.8 51 8-58 66-118 (297)
18 cd07476 Peptidases_S8_thiazoli 96.9 0.0017 3.6E-08 47.8 4.2 67 8-77 69-138 (267)
19 cd07485 Peptidases_S8_Fervidol 96.8 0.002 4.3E-08 46.5 4.3 70 3-76 83-154 (273)
20 cd07498 Peptidases_S8_15 Pepti 96.8 0.0021 4.6E-08 45.1 4.2 65 8-75 61-127 (242)
21 cd07475 Peptidases_S8_C5a_Pept 96.7 0.0024 5.2E-08 47.3 4.0 69 6-77 104-176 (346)
22 cd07492 Peptidases_S8_8 Peptid 96.6 0.0046 1E-07 43.1 4.7 64 9-77 56-121 (222)
23 cd04077 Peptidases_S8_PCSK9_Pr 96.5 0.0053 1.2E-07 43.6 4.7 63 7-77 77-146 (255)
24 cd05561 Peptidases_S8_4 Peptid 96.4 0.0057 1.2E-07 44.0 4.3 62 8-77 54-120 (239)
25 cd07484 Peptidases_S8_Thermita 96.4 0.0053 1.2E-07 43.6 4.0 61 8-77 89-153 (260)
26 cd07489 Peptidases_S8_5 Peptid 96.2 0.0039 8.4E-08 45.8 2.8 48 7-54 87-136 (312)
27 cd07491 Peptidases_S8_7 Peptid 96.1 0.0071 1.5E-07 44.1 3.7 69 8-77 60-136 (247)
28 cd07479 Peptidases_S8_SKI-1_li 96.1 0.0097 2.1E-07 43.2 4.3 47 8-54 63-111 (255)
29 cd07477 Peptidases_S8_Subtilis 96.1 0.0099 2.1E-07 41.1 4.1 63 7-77 59-124 (229)
30 cd00306 Peptidases_S8_S53 Pept 95.5 0.036 7.7E-07 37.0 4.9 64 8-76 64-130 (241)
31 PTZ00262 subtilisin-like prote 95.5 0.024 5.2E-07 47.8 4.7 63 8-77 399-463 (639)
32 cd04842 Peptidases_S8_Kp43_pro 95.4 0.032 7E-07 40.0 4.7 49 6-56 76-129 (293)
33 cd04852 Peptidases_S8_3 Peptid 95.4 0.028 6.1E-07 41.3 4.5 48 7-54 136-185 (307)
34 PF00082 Peptidase_S8: Subtila 95.3 0.0074 1.6E-07 42.6 1.1 47 8-54 68-116 (282)
35 cd04056 Peptidases_S53 Peptida 94.6 0.043 9.4E-07 41.9 3.6 70 4-77 80-153 (361)
36 cd05562 Peptidases_S53_like Pe 91.5 0.28 6.1E-06 36.3 3.8 41 8-52 59-100 (275)
37 cd04857 Peptidases_S8_Tripepti 89.9 0.26 5.6E-06 39.4 2.5 42 8-52 206-254 (412)
38 cd04847 Peptidases_S8_Subtilis 85.5 0.64 1.4E-05 33.8 2.1 49 7-55 58-115 (291)
39 PF03497 Anthrax_toxA: Anthrax 77.4 0.45 9.8E-06 34.7 -1.1 36 16-53 33-68 (179)
40 PF11688 DUF3285: Protein of u 63.8 7.5 0.00016 22.8 2.2 19 60-78 2-20 (45)
41 cd07478 Peptidases_S8_CspA-lik 54.0 17 0.00038 29.0 3.4 46 8-53 99-161 (455)
42 COG1013 PorB Pyruvate:ferredox 53.1 4 8.7E-05 31.2 -0.2 42 2-49 161-205 (294)
43 smart00162 SAPA Saposin/surfac 52.8 6 0.00013 21.8 0.5 7 47-53 4-10 (34)
44 PF10396 TrmE_N: GTP-binding p 52.0 7.7 0.00017 26.2 1.0 18 56-73 96-113 (114)
45 PF12609 DUF3774: Wound-induce 42.5 12 0.00026 23.6 0.8 8 45-52 72-79 (79)
46 TIGR02176 pyruv_ox_red pyruvat 40.0 6.3 0.00014 35.4 -1.1 43 1-49 1022-1068(1165)
47 PF14443 DBC1: DBC1 39.0 35 0.00075 23.7 2.6 28 45-72 21-49 (126)
48 cd03377 TPP_PFOR_PNO Thiamine 38.6 5.4 0.00012 31.9 -1.6 44 1-49 222-268 (365)
49 PF02199 SapA: Saposin A-type 38.5 15 0.00032 19.9 0.6 7 47-53 4-10 (34)
50 KOG4458|consensus 37.9 11 0.00024 24.1 0.0 43 3-47 27-77 (78)
51 PF15566 Imm18: Immunity prote 37.6 3.9 8.5E-05 24.5 -1.9 14 39-52 19-32 (52)
52 cd07488 Peptidases_S8_2 Peptid 35.0 24 0.00052 25.9 1.4 47 3-53 46-96 (247)
53 PLN00165 hypothetical protein; 33.3 22 0.00048 23.3 0.9 9 45-53 80-88 (88)
54 KOG3052|consensus 33.2 18 0.00039 28.5 0.6 40 20-66 118-157 (311)
55 PF09016 Pas_Saposin: Pas fact 32.9 4.6 0.0001 26.0 -2.3 31 34-66 31-61 (76)
56 PF02812 ELFV_dehydrog_N: Glu/ 31.0 48 0.001 22.5 2.3 32 5-39 25-56 (131)
57 PRK01908 electron transport co 29.6 36 0.00078 24.7 1.6 75 2-76 99-183 (205)
58 COG4659 RnfG Predicted NADH:ub 29.5 55 0.0012 24.4 2.6 23 2-24 101-123 (195)
59 TIGR00450 mnmE_trmE_thdF tRNA 28.3 28 0.0006 27.8 0.9 18 56-73 93-110 (442)
60 PF00835 SNAP-25: SNAP-25 fami 27.7 20 0.00043 21.6 0.0 16 44-59 14-30 (61)
61 PF06327 DUF1053: Domain of Un 27.6 26 0.00057 22.0 0.5 8 46-53 3-10 (101)
62 TIGR01947 rnfG electron transp 27.0 82 0.0018 22.2 3.0 75 2-76 95-179 (186)
63 COG0538 Icd Isocitrate dehydro 26.0 68 0.0015 26.3 2.7 27 52-78 181-212 (407)
64 PF02675 AdoMet_dc: S-adenosyl 25.1 33 0.00071 22.0 0.6 10 40-49 69-78 (106)
65 PF11860 DUF3380: Protein of u 24.5 22 0.00047 25.6 -0.3 11 42-52 83-93 (175)
66 PLN02229 alpha-galactosidase 24.4 43 0.00092 27.3 1.3 10 45-54 211-221 (427)
67 COG1404 AprE Subtilisin-like s 21.8 2.9E+02 0.0063 20.2 5.1 67 7-77 204-275 (508)
68 PF13086 AAA_11: AAA domain; P 21.4 31 0.00067 22.8 -0.0 13 46-58 19-31 (236)
69 KOG2366|consensus 21.2 51 0.0011 27.1 1.2 15 42-56 188-203 (414)
70 KOG3980|consensus 20.5 58 0.0012 26.4 1.3 50 2-57 183-234 (361)
71 PRK05291 trmE tRNA modificatio 20.1 42 0.0009 26.7 0.5 18 56-73 101-118 (449)
72 COG0001 HemL Glutamate-1-semia 20.1 92 0.002 25.6 2.4 33 40-77 53-85 (432)
No 1
>KOG3526|consensus
Probab=99.95 E-value=7.5e-29 Score=198.13 Aligned_cols=71 Identities=79% Similarity=1.136 Sum_probs=69.6
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcCC
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~GR 78 (78)
.||||++||+||||||+|++||++||+++++.++.|||||+||||.|||||||||..+|.+||..||++||
T Consensus 229 vgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegr 299 (629)
T KOG3526|consen 229 VGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 299 (629)
T ss_pred eeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhccc
Confidence 35999999999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG3525|consensus
Probab=99.72 E-value=1.5e-18 Score=136.73 Aligned_cols=76 Identities=41% Similarity=0.646 Sum_probs=70.8
Q ss_pred ceeeeec-------ccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHH
Q psy13852 2 ATITMQH-------ELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGV 74 (78)
Q Consensus 2 ~~i~m~~-------gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv 74 (78)
+++++.| |++|+++++|+|||++ .++|.+|+.++.|.++++|||||||||.|||+|+++|..|.++|+++++
T Consensus 88 ~~~a~~~~~~~C~vg~~~~~~~~g~~~l~~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~ 166 (431)
T KOG3525|consen 88 GCVAARANNLTCGVGVAYNATIGGIRMLAG-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGR 166 (431)
T ss_pred cccccccCCCcCCCCcccCccccceeeeee-ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccc
Confidence 3455555 6999999999999999 5999999999999999999999999999999999999999999999999
Q ss_pred hcCC
Q psy13852 75 NEHQ 78 (78)
Q Consensus 75 ~~GR 78 (78)
..||
T Consensus 167 ~~g~ 170 (431)
T KOG3525|consen 167 GCGR 170 (431)
T ss_pred cccc
Confidence 9887
No 3
>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases. Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.
Probab=98.79 E-value=2.3e-08 Score=72.13 Aligned_cols=70 Identities=50% Similarity=0.791 Sum_probs=63.8
Q ss_pred ecccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.+||||+|+|..+|+++. ..++..++.++.+..+.++|.++|||+......+++|..+..+|+++.++++
T Consensus 104 ~~GvAp~a~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~ 173 (297)
T cd04059 104 GVGVAPGAKLGGIRMLDG-DVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNG 173 (297)
T ss_pred cccccccceEeEEEecCC-ccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhC
Confidence 368999999999999999 4889999999999999999999999998888888999999999999988754
No 4
>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.69 E-value=9.5e-05 Score=53.72 Aligned_cols=64 Identities=16% Similarity=-0.022 Sum_probs=43.9
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCC-----------CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-----------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-----------~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~ 76 (78)
.||||+|+|-.+|+++...-+...-++++.|. .+.++|.++|||..... ....++|+.....+
T Consensus 92 ~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~ 165 (285)
T cd07496 92 AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC------SATMQNAINDVRAR 165 (285)
T ss_pred eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC------CHHHHHHHHHHHHC
Confidence 48999999999999975212333334454433 46789999999975432 34566777777776
Q ss_pred C
Q psy13852 77 H 77 (78)
Q Consensus 77 G 77 (78)
|
T Consensus 166 G 166 (285)
T cd07496 166 G 166 (285)
T ss_pred C
Confidence 6
No 5
>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.62 E-value=5.5e-05 Score=54.45 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=45.4
Q ss_pred eecccccCCCcceeeeeCC-CCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 6 MQHELLQISHDGRIRMLDQ-PYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 6 m~~gvAy~a~i~GIRmL~g-~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
...|||++++|-.+|+++. ...+...-..++.+. .+.++|+++|||..... +.....+++++..++|
T Consensus 81 ~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-----~~~~~~~~~~~~~~~g 149 (295)
T cd07474 81 TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-----PDDPDAIAINNAVKAG 149 (295)
T ss_pred ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-----CCCHHHHHHHHHHhcC
Confidence 3469999999999999962 123333333444443 24899999999986543 4455667777777665
No 6
>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins. Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat
Probab=97.59 E-value=8.8e-05 Score=54.71 Aligned_cols=65 Identities=14% Similarity=0.019 Sum_probs=46.5
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.||||+++|..+|+++....++...+.|+.|.. +.++|.++|||..- .......++|++...++|
T Consensus 106 ~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~-----~~~~~~~~~ai~~a~~~g 171 (291)
T cd07483 106 DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF-----SPNKEWVDDAIKYAESKG 171 (291)
T ss_pred EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC-----CCccHHHHHHHHHHHhCC
Confidence 479999999999999642355666677787764 47999999999532 112345667777776665
No 7
>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins. Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.
Probab=97.57 E-value=0.00019 Score=51.66 Aligned_cols=48 Identities=17% Similarity=0.102 Sum_probs=33.6
Q ss_pred cccccCCCcceeeeeCCCC--CChHHHhhhhcCC-----------CCcceeEeCCCCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPY--MTDLIEANSMGHE-----------PNLIDIYSASWGPTDD 55 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~--vtd~~EA~Als~~-----------~~~idIYS~SWGP~Dd 55 (78)
.||||+++|-.+|+++... ..++.++..+... .+.+||.++|||....
T Consensus 72 ~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~ 132 (264)
T cd07481 72 IGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG 132 (264)
T ss_pred eEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC
Confidence 6799999999999998632 2234444333221 2568999999998665
No 8
>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.55 E-value=0.00014 Score=54.99 Aligned_cols=55 Identities=18% Similarity=0.072 Sum_probs=35.3
Q ss_pred cccccCCCcceeeeeCCCCCC--hHH--------HhhhhcCC-CCcceeEeCCCCCCCCCccccCc
Q psy13852 8 HELLQISHDGRIRMLDQPYMT--DLI--------EANSMGHE-PNLIDIYSASWGPTDDGKTVDGP 62 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vt--d~~--------EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP 62 (78)
.||||+|||.++|+|+..... ... .+.++.|. .+.+||.|+|||......+...|
T Consensus 86 ~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~ 151 (311)
T cd07497 86 RGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP 151 (311)
T ss_pred eeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence 589999999999999521122 111 12333443 46899999999986654433333
No 9
>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.
Probab=97.51 E-value=0.00017 Score=50.10 Aligned_cols=71 Identities=20% Similarity=0.171 Sum_probs=45.5
Q ss_pred ecccccCCCcceeeeeCCC--CCChHHHhhhhcCC-CCcceeEeCCCCCCCCCcccc--------CchHHHHHHHHHHHh
Q psy13852 7 QHELLQISHDGRIRMLDQP--YMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD--------GPRNATMRAIVRGVN 75 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~--------gP~~l~~~Al~~Gv~ 75 (78)
.+|+|++++|-.+|+++.+ ..++.....++.+. .+.+||++.|||+.+.....+ .......+++.....
T Consensus 65 ~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (267)
T cd04848 65 MHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAAN 144 (267)
T ss_pred cccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhh
Confidence 4599999999999999773 12233333444433 357999999999988665433 233444455555555
Q ss_pred cC
Q psy13852 76 EH 77 (78)
Q Consensus 76 ~G 77 (78)
+|
T Consensus 145 ~g 146 (267)
T cd04848 145 AG 146 (267)
T ss_pred CC
Confidence 44
No 10
>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.51 E-value=0.00015 Score=52.02 Aligned_cols=70 Identities=19% Similarity=0.056 Sum_probs=46.9
Q ss_pred ecccccCCCcceeeeeCCCCCChHHH----hhhhcCC-CCcceeEeCCCCCCCCCcc--------ccCchHHHHHHHHHH
Q psy13852 7 QHELLQISHDGRIRMLDQPYMTDLIE----ANSMGHE-PNLIDIYSASWGPTDDGKT--------VDGPRNATMRAIVRG 73 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~~vtd~~E----A~Als~~-~~~idIYS~SWGP~DdG~t--------~~gP~~l~~~Al~~G 73 (78)
.+||||+|++-.+|+.+.. .....+ +.++.|. .+.++|+++|||....... ++++.....+|+++.
T Consensus 65 ~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a 143 (261)
T cd07493 65 MVGTAPNASYYLARTEDVA-SETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIA 143 (261)
T ss_pred EEEeCCCCEEEEEEecccC-CcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHH
Confidence 3689999999999987652 322222 3445543 3579999999997654322 445555566778777
Q ss_pred HhcC
Q psy13852 74 VNEH 77 (78)
Q Consensus 74 v~~G 77 (78)
.++|
T Consensus 144 ~~~g 147 (261)
T cd07493 144 ASKG 147 (261)
T ss_pred HhCC
Confidence 7765
No 11
>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.44 E-value=0.00013 Score=51.43 Aligned_cols=62 Identities=16% Similarity=0.024 Sum_probs=40.3
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHH
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVR 72 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~ 72 (78)
.||||+++|-.+|+++....+...-..++.|.. +.+||+++|||..+.. ..|-....+++.+
T Consensus 63 ~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~ 125 (254)
T cd07490 63 IGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSN 125 (254)
T ss_pred EEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHH
Confidence 589999999999999863122222234444432 6799999999987754 3343334444444
No 12
>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.41 E-value=0.00023 Score=50.14 Aligned_cols=68 Identities=16% Similarity=0.101 Sum_probs=43.7
Q ss_pred ecccccCCCcceeeeeCCC---CCChHHHhhhhcCCC---CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 7 QHELLQISHDGRIRMLDQP---YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~---~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
..||||+++|--+|+++.. ..+++.+|.....+. ..++|+++|||..... ........+++.+..++|
T Consensus 65 ~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~---~~~~~~~~~~~~~~~~~g 138 (264)
T cd07487 65 YKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP---SYGEDPLCQAVERLWDAG 138 (264)
T ss_pred eEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCC---CCCCCHHHHHHHHHHhCC
Confidence 5789999999999999863 123444443333332 2799999999987653 222233455666665554
No 13
>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.36 E-value=0.00035 Score=52.19 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=45.7
Q ss_pred eecccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCc------cccCchHHHHHHHHHHHhcC
Q psy13852 6 MQHELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGK------TVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 6 m~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~------t~~gP~~l~~~Al~~Gv~~G 77 (78)
...|||++++|-.+|+++. ...++.+| |.|. .+..||.|+|||...+.. .+........+|+++.+++|
T Consensus 70 ~i~GvAP~a~i~~vkv~~~-~~~~~~~a--i~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~G 145 (298)
T cd07494 70 NLFAIAPGAQFIGVKLGGP-DLVNSVGA--FKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARG 145 (298)
T ss_pred ceeEeCCCCeEEEEEccCC-CcHHHHHH--HHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCC
Confidence 3579999999999999987 45555544 3333 268999999999743221 12222334556777776665
No 14
>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.34 E-value=0.00033 Score=49.52 Aligned_cols=62 Identities=19% Similarity=0.184 Sum_probs=43.3
Q ss_pred cccccCCCcceeeeeCCCC---CChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQPY---MTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.||||+|+|-.+|+++... ..++.++-..-.. +.++|.++|||.... .....+++.+...+|
T Consensus 84 ~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~vin~S~G~~~~-------~~~~~~~~~~~~~~g 148 (259)
T cd07473 84 AGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVD-MGAKIINNSWGGGGP-------SQALRDAIARAIDAG 148 (259)
T ss_pred EEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHH-CCCeEEEeCCCCCCC-------CHHHHHHHHHHHhCC
Confidence 6899999999999998832 2344444333233 689999999998654 344566777766654
No 15
>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=97.31 E-value=0.00075 Score=50.01 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=46.9
Q ss_pred ceeeee------cccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCcccc--CchHHHHHHHHH
Q psy13852 2 ATITMQ------HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD--GPRNATMRAIVR 72 (78)
Q Consensus 2 ~~i~m~------~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~--gP~~l~~~Al~~ 72 (78)
|+|+.+ .||||+++|..+|+++...+.+.++ .|+.|. ...+.+.|.|||..++..... .+.....+|+.+
T Consensus 59 GiIaa~~n~~G~~GvAp~a~l~~i~v~~~~~~~~ai~-~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~ 137 (277)
T cd04843 59 GIIVAKDNGIGVTGIAHGAQAAVVSSTRVSNTADAIL-DAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRT 137 (277)
T ss_pred eeeeeecCCCceeeeccCCEEEEEEecCCCCHHHHHH-HHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHH
Confidence 567765 4899999999999996212333333 334442 345778899999987665432 122233457766
Q ss_pred HHhcC
Q psy13852 73 GVNEH 77 (78)
Q Consensus 73 Gv~~G 77 (78)
...+|
T Consensus 138 a~~~G 142 (277)
T cd04843 138 ATDLG 142 (277)
T ss_pred HHhCC
Confidence 65555
No 16
>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases. Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h
Probab=96.93 E-value=0.0015 Score=46.70 Aligned_cols=50 Identities=8% Similarity=-0.156 Sum_probs=34.1
Q ss_pred cccccCCCcceeeeeCCCCC-ChHHHhhhhcCC-CCcceeEeCCCCCCCCCc
Q psy13852 8 HELLQISHDGRIRMLDQPYM-TDLIEANSMGHE-PNLIDIYSASWGPTDDGK 57 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~v-td~~EA~Als~~-~~~idIYS~SWGP~DdG~ 57 (78)
+||||+|+|-.+|+++.... +...-..++.+. .+.++|.++|||......
T Consensus 70 ~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~ 121 (294)
T cd07482 70 KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG 121 (294)
T ss_pred ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence 58999999999999987311 222223444443 246999999999755443
No 17
>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.87 E-value=0.0013 Score=48.23 Aligned_cols=51 Identities=16% Similarity=-0.092 Sum_probs=36.5
Q ss_pred cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCcc
Q psy13852 8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKT 58 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t 58 (78)
.||||+|+|-.+|++.+. ...+..-++++.|.. +.++|+++|||...+|..
T Consensus 66 ~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~ 118 (297)
T cd07480 66 YGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV 118 (297)
T ss_pred cccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence 589999999999998652 122333345555543 467999999999887763
No 18
>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases. Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).
Probab=96.85 E-value=0.0017 Score=47.77 Aligned_cols=67 Identities=10% Similarity=0.037 Sum_probs=46.2
Q ss_pred cccccCCCcceeeeeCCC--CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.||||+++|--+|++... ..+....+.++.|.. +.+||.++|||+...- ..+.....+|+++..++|
T Consensus 69 ~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~g 138 (267)
T cd07476 69 EGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQT---GEADPILANAVAMCQQNN 138 (267)
T ss_pred eeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCC
Confidence 489999999999998652 122345556777665 4699999999975421 123456677887776665
No 19
>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin. Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev
Probab=96.81 E-value=0.002 Score=46.55 Aligned_cols=70 Identities=19% Similarity=0.086 Sum_probs=47.8
Q ss_pred eeeeecccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852 3 TITMQHELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76 (78)
Q Consensus 3 ~i~m~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~ 76 (78)
-|++.+|||+++++--+|+++.. ..++.....++.|.. +.++|.++|||...... - ....++|+...+++
T Consensus 83 ~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~---~-~~~~~~a~~~~~~~ 154 (273)
T cd07485 83 GIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGI---Y-SPLLKDAFDYFIEN 154 (273)
T ss_pred ccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccc---c-CHHHHHHHHHHHHh
Confidence 36677889999999999999852 244555566666653 47999999999755311 1 23455666666555
No 20
>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.79 E-value=0.0021 Score=45.11 Aligned_cols=65 Identities=22% Similarity=0.133 Sum_probs=41.8
Q ss_pred cccccCCCcceeeeeCCCC-CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHh
Q psy13852 8 HELLQISHDGRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVN 75 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~ 75 (78)
.||||+++|-.+|+++... .+...-+.++.|.. +.++|.++|||..+... .......+++.+..+
T Consensus 61 ~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~---~~~~~~~~~~~~~~~ 127 (242)
T cd07498 61 AGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE---SISSAIDNAATYGRN 127 (242)
T ss_pred EeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc---hHHHHHHHHHHHHhh
Confidence 4899999999999998731 13334445555543 57999999999865432 112233345555544
No 21
>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases. Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr
Probab=96.68 E-value=0.0024 Score=47.28 Aligned_cols=69 Identities=13% Similarity=0.018 Sum_probs=45.4
Q ss_pred eecccccCCCcceeeeeCC---CCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 6 MQHELLQISHDGRIRMLDQ---PYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 6 m~~gvAy~a~i~GIRmL~g---~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
..+||||+|+|-.+|+++. ...++..-..++.+. .+.++|.++|||...+.. .+..+..+|+++...+|
T Consensus 104 ~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~g 176 (346)
T cd07475 104 GIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAG 176 (346)
T ss_pred ceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCC
Confidence 4579999999999999973 123333333344333 247899999999865432 44455667777766655
No 22
>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.59 E-value=0.0046 Score=43.07 Aligned_cols=64 Identities=14% Similarity=0.090 Sum_probs=43.1
Q ss_pred ccccCCCcceeeeeCCCC-CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 9 ELLQISHDGRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 9 gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
+.+++++|..+|+++... .+...-..++.|.. +.+||+++|||...+. +....++++.+..++|
T Consensus 56 ~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a~~~g 121 (222)
T cd07492 56 KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-----DFPLLKELLEYAYKAG 121 (222)
T ss_pred ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-----cCHHHHHHHHHHHHCC
Confidence 467899999999998731 23333445666664 6899999999986653 3344556666655543
No 23
>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins. The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti
Probab=96.51 E-value=0.0053 Score=43.61 Aligned_cols=63 Identities=16% Similarity=0.008 Sum_probs=41.6
Q ss_pred ecccccCCCcceeeeeCCC-CCChHHHhhhhcCCCC------cceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 7 QHELLQISHDGRIRMLDQP-YMTDLIEANSMGHEPN------LIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~~------~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
..||||+++|-.+|+++.. ..+......++.|..+ .++|.++|||-.. .....+++.+..++|
T Consensus 77 ~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--------~~~~~~~~~~~~~~g 146 (255)
T cd04077 77 TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--------STALDAAVAAAVNAG 146 (255)
T ss_pred ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence 3689999999999999873 2333444455555433 4799999999532 334445666655544
No 24
>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.39 E-value=0.0057 Score=43.96 Aligned_cols=62 Identities=10% Similarity=0.013 Sum_probs=41.9
Q ss_pred cccccCCCcceeeeeCCC----CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQP----YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~----~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.|||++++|-.+|+++.. ..+...-++++.|.. +.++|.++|||-+++ ....+|+++..++|
T Consensus 54 ~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~--------~~l~~ai~~a~~~g 120 (239)
T cd05561 54 PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN--------ALLAAAVAAAAARG 120 (239)
T ss_pred cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--------HHHHHHHHHHHHCC
Confidence 489999999999999852 123333346666653 589999999984332 34456666666554
No 25
>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins. Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid
Probab=96.38 E-value=0.0053 Score=43.62 Aligned_cols=61 Identities=15% Similarity=0.084 Sum_probs=41.2
Q ss_pred cccccCCCcceeeeeCCCC---CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQPY---MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.|+|++++|-.+|+++... ..++.+ ++.+.. +.++|.+.|||... +..+..++++...++|
T Consensus 89 ~Giap~a~l~~~~v~~~~~~~~~~~~~~--ai~~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~g 153 (260)
T cd07484 89 AGVAPKAKIMPVKVLDANGSGSLADIAN--GIRYAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKG 153 (260)
T ss_pred EeECCCCEEEEEEEECCCCCcCHHHHHH--HHHHHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCC
Confidence 5899999999999998631 233333 344432 46899999999865 3445566666655554
No 26
>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5. gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.23 E-value=0.0039 Score=45.84 Aligned_cols=48 Identities=15% Similarity=0.074 Sum_probs=33.5
Q ss_pred ecccccCCCcceeeeeCCC-CCChHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852 7 QHELLQISHDGRIRMLDQP-YMTDLIEANSMGHE-PNLIDIYSASWGPTD 54 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~-~~~idIYS~SWGP~D 54 (78)
.+||||+|+|-.+|+++.. ..+...-+.++.+. .+.++|.++|||...
T Consensus 87 ~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~ 136 (312)
T cd07489 87 FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS 136 (312)
T ss_pred eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence 3589999999999999732 22333334455444 357999999999643
No 27
>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=96.13 E-value=0.0071 Score=44.08 Aligned_cols=69 Identities=20% Similarity=0.221 Sum_probs=46.2
Q ss_pred cccccCCCcceeeeeCCCC-------CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQPY-------MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~-------vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.|||++++|-.+|+++... .+...-+.|+.|.. +.+||.++|||....- ....-....++|+.+..++|
T Consensus 60 ~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~-~~~~~~~~l~~ai~~A~~~G 136 (247)
T cd07491 60 CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE-DNDNDINELENAIKEALDRG 136 (247)
T ss_pred HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc-ccccchHHHHHHHHHHHhCC
Confidence 3799999999999998621 23334467777764 5899999999964321 11222445566777776665
No 28
>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins. SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem
Probab=96.11 E-value=0.0097 Score=43.21 Aligned_cols=47 Identities=13% Similarity=0.058 Sum_probs=34.3
Q ss_pred cccccCCCcceeeeeCCCCCC-hHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPYMT-DLIEANSMGHE-PNLIDIYSASWGPTD 54 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vt-d~~EA~Als~~-~~~idIYS~SWGP~D 54 (78)
.||||+++|-.+|+++..... ...-..++.|. .+.+||.++|||..+
T Consensus 63 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~ 111 (255)
T cd07479 63 LGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD 111 (255)
T ss_pred eeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC
Confidence 589999999999999763221 12234566665 358999999999654
No 29
>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins. This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug
Probab=96.10 E-value=0.0099 Score=41.07 Aligned_cols=63 Identities=21% Similarity=0.182 Sum_probs=40.6
Q ss_pred ecccccCCCcceeeeeCCCC---CChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 7 QHELLQISHDGRIRMLDQPY---MTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.+||||+++|-.+|+++... ..++.++-..-.+ +.++|.++|||..+.. ....+++....++|
T Consensus 59 ~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~-~~~~Vin~S~g~~~~~-------~~~~~~~~~a~~~g 124 (229)
T cd07477 59 VVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIE-NGMDIINMSLGGPSDS-------PALREAIKKAYAAG 124 (229)
T ss_pred cEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH-CCCCEEEECCccCCCC-------HHHHHHHHHHHHCC
Confidence 46899999999999998631 1234433322223 4699999999975432 33455666655554
No 30
>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav
Probab=95.54 E-value=0.036 Score=37.03 Aligned_cols=64 Identities=16% Similarity=0.053 Sum_probs=42.5
Q ss_pred cccccCCCcceeeeeCCCC-CChHHHhhhhcCC--CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852 8 HELLQISHDGRIRMLDQPY-MTDLIEANSMGHE--PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~--~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~ 76 (78)
.|+|++++|.-+|+++... .....-..++.+. .+.++|.++|||..... +.....+++.+..++
T Consensus 64 ~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-----~~~~~~~~~~~~~~~ 130 (241)
T cd00306 64 VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-----PSSALSEAIDYALAK 130 (241)
T ss_pred EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHh
Confidence 4789999999999998731 1333334555554 47899999999986544 344445555554443
No 31
>PTZ00262 subtilisin-like protease; Provisional
Probab=95.46 E-value=0.024 Score=47.81 Aligned_cols=63 Identities=6% Similarity=-0.197 Sum_probs=42.7
Q ss_pred cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
.||||+|+|-.+|+|+.. .-+...-+.|+.|.- +.++|.++|||-.. ......+|+.+..++|
T Consensus 399 ~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~-------~s~~l~~AV~~A~~kG 463 (639)
T PTZ00262 399 VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE-------YSGIFNESVKYLEEKG 463 (639)
T ss_pred eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC-------ccHHHHHHHHHHHHCC
Confidence 589999999999999852 122233345666652 57899999998432 2334567777776665
No 32
>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases. Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases
Probab=95.45 E-value=0.032 Score=39.98 Aligned_cols=49 Identities=16% Similarity=0.045 Sum_probs=33.8
Q ss_pred eecccccCCCcceeeeeCCCC----CChHHHhhhhcCCC-CcceeEeCCCCCCCCC
Q psy13852 6 MQHELLQISHDGRIRMLDQPY----MTDLIEANSMGHEP-NLIDIYSASWGPTDDG 56 (78)
Q Consensus 6 m~~gvAy~a~i~GIRmL~g~~----vtd~~EA~Als~~~-~~idIYS~SWGP~DdG 56 (78)
..+||||+++|-.+|+++... ..+.. .++.+.. +.++|.++|||.....
T Consensus 76 ~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Vin~S~G~~~~~ 129 (293)
T cd04842 76 LYKGVAPKAKLYFQDIGDTSGNLSSPPDLN--KLFSPMYDAGARISSNSWGSPVNN 129 (293)
T ss_pred ccccccccCeEEEEEeeccCccccCCccHH--HHHHHHHHhCCEEEeccCCCCCcc
Confidence 468999999999999998731 12233 3333332 3489999999986543
No 33
>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=95.43 E-value=0.028 Score=41.31 Aligned_cols=48 Identities=8% Similarity=-0.072 Sum_probs=33.2
Q ss_pred ecccccCCCcceeeeeCC-CCCChHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852 7 QHELLQISHDGRIRMLDQ-PYMTDLIEANSMGHE-PNLIDIYSASWGPTD 54 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g-~~vtd~~EA~Als~~-~~~idIYS~SWGP~D 54 (78)
.+||||+++|-.+|+++. ...+...-..++.|. .+.++|.+.|||...
T Consensus 136 ~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 185 (307)
T cd04852 136 ASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGS 185 (307)
T ss_pred EEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 469999999999999986 122222222444443 257899999999754
No 34
>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification. ; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....
Probab=95.32 E-value=0.0074 Score=42.61 Aligned_cols=47 Identities=11% Similarity=0.087 Sum_probs=34.2
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCC--CCcceeEeCCCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE--PNLIDIYSASWGPTD 54 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~--~~~idIYS~SWGP~D 54 (78)
.|||++++|-.+|+++....+...-..++.+. .+.++|++.|||+.+
T Consensus 68 ~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~ 116 (282)
T PF00082_consen 68 NGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNS 116 (282)
T ss_dssp TCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEE
T ss_pred ccccccccccccccccccccccccccchhhhhhhccCCccccccccccc
Confidence 78999999999999887322222233455554 367899999999954
No 35
>cd04056 Peptidases_S53 Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-
Probab=94.58 E-value=0.043 Score=41.94 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=45.0
Q ss_pred eeeecccccCCCcceeeeeCCCCCChHHHh--hhhcCCCCcceeEeCCCCCCCCCccccCch--HHHHHHHHHHHhcC
Q psy13852 4 ITMQHELLQISHDGRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDGKTVDGPR--NATMRAIVRGVNEH 77 (78)
Q Consensus 4 i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA--~Als~~~~~idIYS~SWGP~DdG~t~~gP~--~l~~~Al~~Gv~~G 77 (78)
|-+.||||++++|--++..+. ..++...+ .++....+..+|-|+|||-...-. .+. ....+++++...+|
T Consensus 80 v~~~~gvAP~a~i~~~~~~~~-~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~---~~~~~~~~~~~~~~a~~~G 153 (361)
T cd04056 80 VEYAGAIAPGANITLYFAPGT-VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSL---PPAYAQRVCNLFAQAAAQG 153 (361)
T ss_pred HHHHHhccCCCeEEEEEECCc-CccHHHHHHHHHHHcCCCCCCEEEccCCcccccc---CHHHHHHHHHHHHHHHhCC
Confidence 346799999999999999876 23444433 334444468999999999654321 122 22335666666655
No 36
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=91.54 E-value=0.28 Score=36.34 Aligned_cols=41 Identities=12% Similarity=-0.022 Sum_probs=30.4
Q ss_pred cccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGP 52 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP 52 (78)
.|||++++|--.|...+ ..++. .++.|. .+.++|-+.|||-
T Consensus 59 ~GvAP~a~l~~~~~~~~--~~~i~--~ai~~a~~~g~~Vin~S~g~ 100 (275)
T cd05562 59 HDIAPGAELAFHTAGGG--ELDFA--AAIRALAAAGADIIVDDIGY 100 (275)
T ss_pred hccCCCCEEEEEecCCC--HHHHH--HHHHHHHHcCCCEEEecccc
Confidence 59999999998887654 44554 445554 2589999999984
No 37
>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II. Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.
Probab=89.86 E-value=0.26 Score=39.44 Aligned_cols=42 Identities=17% Similarity=0.184 Sum_probs=29.8
Q ss_pred cccccCCCcceeeeeCCCCCC------hHHHhhhhcCCC-CcceeEeCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPYMT------DLIEANSMGHEP-NLIDIYSASWGP 52 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~vt------d~~EA~Als~~~-~~idIYS~SWGP 52 (78)
.||||+|+|-.+|+++.. .. ++.+ ++.+.. ..+||.++|||-
T Consensus 206 ~GVAP~A~I~svkv~d~~-~gs~~t~~~l~~--ai~~ai~~gadVIN~SlG~ 254 (412)
T cd04857 206 NGVAPGAQIVSIKIGDTR-LGSMETGTALVR--AMIAAIETKCDLINMSYGE 254 (412)
T ss_pred EEecCCCeEEEEEeccCC-CCCccchHHHHH--HHHHHHHcCCCEEEecCCc
Confidence 589999999999998762 21 2333 333332 479999999994
No 38
>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=85.49 E-value=0.64 Score=33.82 Aligned_cols=49 Identities=12% Similarity=0.125 Sum_probs=32.0
Q ss_pred ecccccCCCcceeeeeCCC-----CCC--hHHHhh--hhcCCCCcceeEeCCCCCCCC
Q psy13852 7 QHELLQISHDGRIRMLDQP-----YMT--DLIEAN--SMGHEPNLIDIYSASWGPTDD 55 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~-----~vt--d~~EA~--Als~~~~~idIYS~SWGP~Dd 55 (78)
..|||++++|-.+|+|+.. ..+ ++.+|- ++..+.+.++|.+.|||-...
T Consensus 58 ~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~ 115 (291)
T cd04847 58 NGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLP 115 (291)
T ss_pred CCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCC
Confidence 3579999999999999872 011 233231 222223446999999997654
No 39
>PF03497 Anthrax_toxA: Anthrax toxin LF subunit; InterPro: IPR005165 Anthrax toxin is a plasmid-encoded toxin complex produced by the Gram-positive, spore-forming bacteria, Bacillus anthracis. The toxin consists of three non-toxic proteins: the protective antigen (PA), the lethal factor (LF) and the edema factor (EF) []. These component proteins self-assemble at the surface of host cell receptors, yielding a series of toxic complexes that can produce shock-like symptoms and death. Anthrax toxin is one of a large group of Bacillus and Clostridium exotoxins referred to as binary toxins, forming independent enzymatic (A moiety) and binding (B moiety) components. The LF and EF proteins are the enzymes (A moiety) that act on cytosolic substrates, while PA is a multi-functional protein (B moiety) that binds to cell surface receptors, mediates the assembly and internalisation of the complexes, and delivers them to the host cell endosome []. Once PA is attached to the host receptor [], it must then be cleaved by a host cell surface (furin family) protease before it is able to bind EF and LF. The cleavage of the N terminus of PA enables the C-terminal fragment to self-associate into a ring-shaped heptameric complex (prepore) that can bind LF or EF competitively. The PA-LF/EF complex is then internalised by endocytosis, and delivered to the endosome, where PA forms a pore in the endosomal membrane in order to translocate LF and EF to the cytosol. LF is a Zn-dependent metalloprotease that cleaves and inactivates mitogen-activated protein (MAP) kinases, kills macrophages, and causes death of the host by inhibiting cell proliferation [, ]. EF is a calcium-and calmodulin-dependent adenylyl cyclase that can cause edema (fluid-filled swelling) when associated with PA. EF is not toxic by itself, and is required for the survival of germinated Bacillus spores within macrophages at the early stages of infection. EF dramatically elevates the level of host intracellular cAMP, a ubiquitous messenger that integrates many processes of the cell; increases in cAMP can interfere with host intracellular signalling []. This entry represents a central domain in the edema factor adenylyl cyclase protein of anthrax toxin, as well as in adenylyl cylcases from other bacterial toxins.; GO: 0008294 calcium- and calmodulin-responsive adenylate cyclase activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2COL_A 1YRT_A 1YRU_A 1ZOT_A 1S26_C 1XFY_F 1XFX_C 1Y0V_A 1SK6_C 1XFW_C ....
Probab=77.41 E-value=0.45 Score=34.69 Aligned_cols=36 Identities=28% Similarity=0.366 Sum_probs=21.1
Q ss_pred cceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCC
Q psy13852 16 DGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPT 53 (78)
Q Consensus 16 i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~ 53 (78)
|=|||-.+. ..|+++|.-. .-+--+|.=-||+|||.
T Consensus 33 iI~iRpV~~-~st~LI~~G~-~tKgl~vkgKSsdWGP~ 68 (179)
T PF03497_consen 33 IIGIRPVNK-LSTSLIESGY-ATKGLHVKGKSSDWGPQ 68 (179)
T ss_dssp EEEEE---H-HHHHHHHCT--EE--TT--S--BSSCCC
T ss_pred EEEEEeCCc-chHHHHhcCC-CCCCcccccccCCCCCc
Confidence 458898888 6889998776 66667889999999995
No 40
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=63.78 E-value=7.5 Score=22.78 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=15.9
Q ss_pred cCchHHHHHHHHHHHhcCC
Q psy13852 60 DGPRNATMRAIVRGVNEHQ 78 (78)
Q Consensus 60 ~gP~~l~~~Al~~Gv~~GR 78 (78)
+.|...++.|++|-|+||+
T Consensus 2 ~p~pSyvKLAMRNMVRKg~ 20 (45)
T PF11688_consen 2 EPPPSYVKLAMRNMVRKGG 20 (45)
T ss_pred CCCchHHHHHHHHHHHccC
Confidence 3466779999999999996
No 41
>cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins. GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure
Probab=53.97 E-value=17 Score=28.96 Aligned_cols=46 Identities=13% Similarity=0.005 Sum_probs=29.3
Q ss_pred cccccCCCcceeeeeCCCC-------------CChHHHhhhhcCC----CCcceeEeCCCCCC
Q psy13852 8 HELLQISHDGRIRMLDQPY-------------MTDLIEANSMGHE----PNLIDIYSASWGPT 53 (78)
Q Consensus 8 ~gvAy~a~i~GIRmL~g~~-------------vtd~~EA~Als~~----~~~idIYS~SWGP~ 53 (78)
.||||+|+|-.+|++.... .+|+.+|-.+-.+ .+.-+|-+-|||-.
T Consensus 99 ~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~p~VInlSlG~~ 161 (455)
T cd07478 99 KGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTN 161 (455)
T ss_pred cccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCCCeEEEEccCcC
Confidence 5899999999999998731 2244444322111 12346888888853
No 42
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=53.13 E-value=4 Score=31.23 Aligned_cols=42 Identities=19% Similarity=0.230 Sum_probs=29.5
Q ss_pred ceeeeecccccCCCcceeeeeCCCCCChHHHh--hh-hcCCCCcceeEeCC
Q psy13852 2 ATITMQHELLQISHDGRIRMLDQPYMTDLIEA--NS-MGHEPNLIDIYSAS 49 (78)
Q Consensus 2 ~~i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA--~A-ls~~~~~idIYS~S 49 (78)
+.|||.||+.|=|++ ..+ +..+..+. .| -.+.+-.||+||.+
T Consensus 161 ~~la~a~G~~yVAr~-----~~~-~~~~l~~~i~kA~~~~Gps~I~v~sPC 205 (294)
T COG1013 161 GLLAMAAGATYVARA-----SVG-DPKDLTEKIKKAAEHKGPSFIDVLSPC 205 (294)
T ss_pred HHHHHHCCCCeEEEe-----ccc-CHHHHHHHHHHHHhccCCeEEEEecCC
Confidence 578999999998854 445 34555544 33 34468899999986
No 43
>smart00162 SAPA Saposin/surfactant protein-B A-type DOMAIN. Present as four and three degenerate copies, respectively, in prosaposin and surfactant protein B. Single copies in acid sphingomyelinase, NK-lysin amoebapores and granulysin. Putative phospholipid membrane binding domains.
Probab=52.82 E-value=6 Score=21.81 Aligned_cols=7 Identities=43% Similarity=1.507 Sum_probs=5.8
Q ss_pred eCCCCCC
Q psy13852 47 SASWGPT 53 (78)
Q Consensus 47 S~SWGP~ 53 (78)
-|+|||+
T Consensus 4 ~CtwGPs 10 (34)
T smart00162 4 RCTWGPS 10 (34)
T ss_pred cccCCCh
Confidence 5899995
No 44
>PF10396 TrmE_N: GTP-binding protein TrmE N-terminus; InterPro: IPR018948 This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein []. ; PDB: 1XZQ_B 1XZP_A 3GEE_A 3GEI_B 3GEH_A.
Probab=52.01 E-value=7.7 Score=26.18 Aligned_cols=18 Identities=33% Similarity=0.547 Sum_probs=13.0
Q ss_pred CccccCchHHHHHHHHHH
Q psy13852 56 GKTVDGPRNATMRAIVRG 73 (78)
Q Consensus 56 G~t~~gP~~l~~~Al~~G 73 (78)
|..+..|++.|++||.||
T Consensus 96 G~R~A~pGEFT~RAflNG 113 (114)
T PF10396_consen 96 GARLAEPGEFTRRAFLNG 113 (114)
T ss_dssp T-EE--TTHHHHHHHHTT
T ss_pred CceEcCCchhhHHHHhcC
Confidence 556788999999999986
No 45
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=42.54 E-value=12 Score=23.63 Aligned_cols=8 Identities=50% Similarity=1.572 Sum_probs=7.1
Q ss_pred eEeCCCCC
Q psy13852 45 IYSASWGP 52 (78)
Q Consensus 45 IYS~SWGP 52 (78)
.|-.+|||
T Consensus 72 MyLSCWGP 79 (79)
T PF12609_consen 72 MYLSCWGP 79 (79)
T ss_pred EEEeccCc
Confidence 68899998
No 46
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=39.98 E-value=6.3 Score=35.38 Aligned_cols=43 Identities=14% Similarity=0.312 Sum_probs=29.1
Q ss_pred CceeeeecccccCCCcc-eeeeeCCCCCChHHHh--hhhcCC-CCcceeEeCC
Q psy13852 1 MATITMQHELLQISHDG-RIRMLDQPYMTDLIEA--NSMGHE-PNLIDIYSAS 49 (78)
Q Consensus 1 ~~~i~m~~gvAy~a~i~-GIRmL~g~~vtd~~EA--~Als~~-~~~idIYS~S 49 (78)
++.|||.||..|=|+++ |-. ..++.++ .|+.|+ +-.|++||.+
T Consensus 1022 ~~~~a~~~g~~yvA~~~~~~~------~~~~~~~~~~A~~~~G~s~i~~~~pC 1068 (1165)
T TIGR02176 1022 LGMMAMTYGYVYVAQVSMGAN------MQQTLKAFREAEAYDGPSIVIAYSPC 1068 (1165)
T ss_pred HHHHHHHCCCCEEEEEecccC------HHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 45799999999988765 322 2333333 345555 7899999985
No 47
>PF14443 DBC1: DBC1
Probab=38.96 E-value=35 Score=23.72 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=21.2
Q ss_pred eEeCCCCCCCCC-ccccCchHHHHHHHHH
Q psy13852 45 IYSASWGPTDDG-KTVDGPRNATMRAIVR 72 (78)
Q Consensus 45 IYS~SWGP~DdG-~t~~gP~~l~~~Al~~ 72 (78)
-..-.|.|+-|| .-...|..|.+-|++.
T Consensus 21 aiGG~WspsLDG~DP~~dp~~LI~TAiR~ 49 (126)
T PF14443_consen 21 AIGGPWSPSLDGGDPSSDPSVLIRTAIRT 49 (126)
T ss_pred ecCCcCCcccCCCCCCCCcHHHHHHHHHH
Confidence 345789999555 5566699999998864
No 48
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=38.57 E-value=5.4 Score=31.87 Aligned_cols=44 Identities=18% Similarity=0.203 Sum_probs=30.0
Q ss_pred CceeeeecccccCCCcceeeeeCCCCCChHHHh--hhhcCC-CCcceeEeCC
Q psy13852 1 MATITMQHELLQISHDGRIRMLDQPYMTDLIEA--NSMGHE-PNLIDIYSAS 49 (78)
Q Consensus 1 ~~~i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA--~Als~~-~~~idIYS~S 49 (78)
++.|+|.||+.|=|+++=- . ...++.++ .|+.|+ +-.|+|||.+
T Consensus 222 ~~~ia~a~g~~YVA~~s~~----~-~~~~~~~~i~eA~~~~Gps~I~v~sPC 268 (365)
T cd03377 222 LGMIAMSYGNVYVAQIALG----A-NDNQTLKAFREAEAYDGPSLIIAYSPC 268 (365)
T ss_pred HHHHHHHcCCCEEEEEecc----c-CHHHHHHHHHHHhcCCCCEEEEEEccC
Confidence 4679999999999976421 1 23454444 355565 7799999975
No 49
>PF02199 SapA: Saposin A-type domain; InterPro: IPR003119 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ]. The saposin A-type domain may play a role in targeting, as propeptides containing the saposin A-type domain of the C terminus of prosaposin and of the N-terminal part of pulmonary surfactant-associated protein B are involved in the transport to the lysosome and to secretory granules (lamellar bodies, which are lysosomal-like organelles), respectively [].
Probab=38.55 E-value=15 Score=19.95 Aligned_cols=7 Identities=43% Similarity=1.526 Sum_probs=5.6
Q ss_pred eCCCCCC
Q psy13852 47 SASWGPT 53 (78)
Q Consensus 47 S~SWGP~ 53 (78)
-|+|||+
T Consensus 4 ~C~~GP~ 10 (34)
T PF02199_consen 4 QCTWGPS 10 (34)
T ss_pred ccCCCCC
Confidence 4899995
No 50
>KOG4458|consensus
Probab=37.91 E-value=11 Score=24.12 Aligned_cols=43 Identities=19% Similarity=0.088 Sum_probs=25.5
Q ss_pred eeeeecccccCCCcceeeeeCCCCCChHHHhhh------hc--CCCCcceeEe
Q psy13852 3 TITMQHELLQISHDGRIRMLDQPYMTDLIEANS------MG--HEPNLIDIYS 47 (78)
Q Consensus 3 ~i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA~A------ls--~~~~~idIYS 47 (78)
|.|.|||+-|+||--|-==+..| .+.+|--| .+ +++-.+.|||
T Consensus 27 e~a~qhgi~feakyvgsldiprp--~srieivaamrrir~~f~~kn~k~e~~s 77 (78)
T KOG4458|consen 27 EDAFQHGICFEAKYVGSLDIPRP--GSRIEIVAAMRRIRVEFFAKNIKIEIVS 77 (78)
T ss_pred hhhhhccceEeeeeeeeecCCCC--CCeeehhHhhhhheeeeeeccceEEEee
Confidence 56889999999998775333332 34443322 33 3344566666
No 51
>PF15566 Imm18: Immunity protein 18
Probab=37.65 E-value=3.9 Score=24.53 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=12.5
Q ss_pred CCCcceeEeCCCCC
Q psy13852 39 EPNLIDIYSASWGP 52 (78)
Q Consensus 39 ~~~~idIYS~SWGP 52 (78)
.+++++..|.+||=
T Consensus 19 ~~~H~Hlmtp~WgG 32 (52)
T PF15566_consen 19 PFDHEHLMTPDWGG 32 (52)
T ss_pred CCCCceeccccccc
Confidence 67899999999984
No 52
>cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.
Probab=34.95 E-value=24 Score=25.86 Aligned_cols=47 Identities=15% Similarity=0.092 Sum_probs=26.2
Q ss_pred eeeeecccccCCCcceeeee----CCCCCChHHHhhhhcCCCCcceeEeCCCCCC
Q psy13852 3 TITMQHELLQISHDGRIRML----DQPYMTDLIEANSMGHEPNLIDIYSASWGPT 53 (78)
Q Consensus 3 ~i~m~~gvAy~a~i~GIRmL----~g~~vtd~~EA~Als~~~~~idIYS~SWGP~ 53 (78)
.|+=+.++++++++--.++. ++ ....++++. .....++|.+.|||-.
T Consensus 46 iiag~~~~~p~a~~~~~~~~~~~~~~-~~~~i~~~~---~~~~gv~VINmS~G~~ 96 (247)
T cd07488 46 IMGGRDGGLPAVNLYSSAFGIKSNNG-QWQECLEAQ---QNGNNVKIINHSYGEG 96 (247)
T ss_pred HHHhccCCCCccceehhhhCCCCCCc-cHHHHHHHH---HhcCCceEEEeCCccC
Confidence 45555667777775432332 23 223333332 2346799999999954
No 53
>PLN00165 hypothetical protein; Provisional
Probab=33.33 E-value=22 Score=23.29 Aligned_cols=9 Identities=44% Similarity=1.416 Sum_probs=7.3
Q ss_pred eEeCCCCCC
Q psy13852 45 IYSASWGPT 53 (78)
Q Consensus 45 IYS~SWGP~ 53 (78)
.|-.+|||.
T Consensus 80 MyLSCWGPN 88 (88)
T PLN00165 80 MYLSCWGPN 88 (88)
T ss_pred eEecccCCC
Confidence 688889994
No 54
>KOG3052|consensus
Probab=33.16 E-value=18 Score=28.46 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=29.0
Q ss_pred eeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHH
Q psy13852 20 RMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNAT 66 (78)
Q Consensus 20 RmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~ 66 (78)
|-|-| ..-...||.++-=.-...| ||.|.|..+..|+.|+
T Consensus 118 R~lVg-v~~Te~EaKa~A~eiev~D------gpdd~G~~~~RPGkLs 157 (311)
T KOG3052|consen 118 RHLVG-VCYTEEEAKAMAAEIEVVD------GPDDEGEMFTRPGKLS 157 (311)
T ss_pred Hhhhh-hhccHHHHHHhhhheeecc------CCCCCCCcccCCcccc
Confidence 44555 3445667777665555555 9999999999999984
No 55
>PF09016 Pas_Saposin: Pas factor saposin fold; InterPro: IPR015106 Members of this entry adopt a compact structure comprising five alpha helices. Charged and polar residues are exposed mostly on the surface, while most of the hydrophobic residues are buried inside the hydrophobic core of the helical bundle. The precise function of this domain is unknown, but it is has been shown to induce secretion of periplasmic proteins, especially collagenase []. ; PDB: 2B8I_A.
Probab=32.92 E-value=4.6 Score=25.96 Aligned_cols=31 Identities=19% Similarity=0.534 Sum_probs=19.2
Q ss_pred hhhcCCCCcceeEeCCCCCCCCCccccCchHHH
Q psy13852 34 NSMGHEPNLIDIYSASWGPTDDGKTVDGPRNAT 66 (78)
Q Consensus 34 ~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~ 66 (78)
..|+|.. ..-.|||-.||.-.|| ++.+..+.
T Consensus 31 LdLpFdK-QlaLYs~~LGPaSsGk-Le~~~~i~ 61 (76)
T PF09016_consen 31 LDLPFDK-QLALYSCALGPASSGK-LENSQDIN 61 (76)
T ss_dssp H---HHH-HHHHHHHTHHHHHTTS---SHHHHH
T ss_pred cCCcHHH-HHHHHHHhcCccccCC-ccChhhHH
Confidence 3345543 3457999999999997 88877653
No 56
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=30.97 E-value=48 Score=22.50 Aligned_cols=32 Identities=22% Similarity=0.204 Sum_probs=21.4
Q ss_pred eeecccccCCCcceeeeeCCCCCChHHHhhhhcCC
Q psy13852 5 TMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHE 39 (78)
Q Consensus 5 ~m~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~ 39 (78)
..||..+-..-.+|||+... + +..|+.+|+..
T Consensus 25 ~v~h~~~~GPa~GGiR~~~~--~-s~~ev~~LA~~ 56 (131)
T PF02812_consen 25 RVQHSTARGPAKGGIRMHPY--V-SEEEVLRLARG 56 (131)
T ss_dssp EEEEE-SSSSEEEEEEEETT--S-SHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCeEEecC--C-CHHHHHHHHHH
Confidence 34666777778899999987 3 44477766543
No 57
>PRK01908 electron transport complex protein RnfG; Validated
Probab=29.63 E-value=36 Score=24.67 Aligned_cols=75 Identities=21% Similarity=0.206 Sum_probs=44.1
Q ss_pred ceeeeecccccCCCcceeeeeCCC---CCChHHHh--hhh--cCCCCcc-eeEeCCCCCCCCCccccCch--HHHHHHHH
Q psy13852 2 ATITMQHELLQISHDGRIRMLDQP---YMTDLIEA--NSM--GHEPNLI-DIYSASWGPTDDGKTVDGPR--NATMRAIV 71 (78)
Q Consensus 2 ~~i~m~~gvAy~a~i~GIRmL~g~---~vtd~~EA--~Al--s~~~~~i-dIYS~SWGP~DdG~t~~gP~--~l~~~Al~ 71 (78)
|.|.+..|+..+-+|.|||+|+.. -+.+..|. ..+ .|.-+.+ +=--..|....+|..+|+-. .+|-+|+.
T Consensus 99 G~I~v~Vgi~~dg~I~gi~vl~h~ETpGLG~~i~~~~~~f~~qf~Gksl~~~~~~~~~v~k~g~~vDaISGATITS~aV~ 178 (205)
T PRK01908 99 GAIQLLVGADFNGTVLGVRVLEHHETPGLGDKIELRISDWITHFSGKKISGENDKHWAVKKDGGDFDQFTGATITPRAVV 178 (205)
T ss_pred ceEEEEEEEcCCCeEEEEEEeecCCCcccchhhhhccHHHHHHhCCCccccccccceeeccCCCCCCeEeeceeeHHHHH
Confidence 567788888888999999999763 13333322 111 2222211 00012577766665566655 44667888
Q ss_pred HHHhc
Q psy13852 72 RGVNE 76 (78)
Q Consensus 72 ~Gv~~ 76 (78)
++|++
T Consensus 179 ~aV~~ 183 (205)
T PRK01908 179 NAVKR 183 (205)
T ss_pred HHHHH
Confidence 88765
No 58
>COG4659 RnfG Predicted NADH:ubiquinone oxidoreductase, subunit RnfG [Energy production and conversion]
Probab=29.46 E-value=55 Score=24.37 Aligned_cols=23 Identities=9% Similarity=0.057 Sum_probs=21.1
Q ss_pred ceeeeecccccCCCcceeeeeCC
Q psy13852 2 ATITMQHELLQISHDGRIRMLDQ 24 (78)
Q Consensus 2 ~~i~m~~gvAy~a~i~GIRmL~g 24 (78)
|.|-+-.|+.++.+|-|+|.++-
T Consensus 101 G~I~llvGi~~~G~vlGvRVi~h 123 (195)
T COG4659 101 GAIQLLVGIDFDGTVLGVRVIEH 123 (195)
T ss_pred ceEEEEEEEcCCCeEEEEEEEec
Confidence 67899999999999999999976
No 59
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=28.31 E-value=28 Score=27.81 Aligned_cols=18 Identities=33% Similarity=0.556 Sum_probs=15.2
Q ss_pred CccccCchHHHHHHHHHH
Q psy13852 56 GKTVDGPRNATMRAIVRG 73 (78)
Q Consensus 56 G~t~~gP~~l~~~Al~~G 73 (78)
|.....|++.|++||.||
T Consensus 93 g~R~A~pGEFT~RAflNG 110 (442)
T TIGR00450 93 GARLAQPGEFTQRAFLNG 110 (442)
T ss_pred CCeEcCCchhhHHHHhcC
Confidence 456788999999999987
No 60
>PF00835 SNAP-25: SNAP-25 family; InterPro: IPR000928 SNAP-25 (synaptosome-associated protein 25 kDa) proteins are components of SNARE complexes, which are proposed to account for the specificity of membrane fusion and to directly execute fusion by forming a tight complex (the SNARE or core complex) that brings the synaptic vesicle and plasma membranes together. The SNAREs constitute a large family of proteins that are characterised by 60-residue sequences known as SNARE motifs (IPR000727 from INTERPRO), which have a high propensity to form coiled coils and often precede carboxy-terminal transmembrane regions. The synaptic core complex is formed by four SNARE motifs (two from SNAP25 and one each from synaptobrevin and syntaxin 1) that are unstructured in isolation but form a parallel four-helix bundle on assembly. The crystal structure of the core complex revealed that the helix bundle is highly twisted and contains several salt bridges on the surface, as well as layers of interior hydrophobic residues. However, a polar layer in the centre of the complex is formed by three glutamines (two from SNAP25 and one from syntaxin 1) and one arginine (from synaptobrevin) []. Members of the SNAP-25 family contain a cluster of cysteine residues that can be palmitoylated for membrane attachment [].; PDB: 3RL0_H 3RK2_D 3RK3_D 1KIL_D 1SFC_L 3HD7_H 3IPD_H 1L4A_D.
Probab=27.73 E-value=20 Score=21.61 Aligned_cols=16 Identities=56% Similarity=1.257 Sum_probs=0.0
Q ss_pred eeEeCCCCCCCC-Cccc
Q psy13852 44 DIYSASWGPTDD-GKTV 59 (78)
Q Consensus 44 dIYS~SWGP~Dd-G~t~ 59 (78)
.=|-..|++.+| |+.+
T Consensus 14 ~~yk~tw~~n~d~g~Vv 30 (61)
T PF00835_consen 14 KAYKQTWGPNDDDGKVV 30 (61)
T ss_dssp -----------------
T ss_pred chhhhccCCCcccCccc
Confidence 357889999999 7655
No 61
>PF06327 DUF1053: Domain of Unknown Function (DUF1053); InterPro: IPR009398 Cyclic AMP (cAMP) is a ubiquitous signalling molecule which mediates many cellular processes by activating cAMP-dependent kinases and also inducing protein-protein interactions. This molecule is produced by the adenylate cyclase (AC) enzyme, using ATP as its substrate. Mammalian adenylate cyclase has nine closely related membrane-bound isoforms (AC1-9) showing significant sequence homology and sharing the same overall structure: two hydrophobic transmembrane domains, and two cytoplasmic domains that are responsible for the catalytic activity. These isoforms differ in both their tissue specificity and their regulation. Regulatory factors known to influence one or more of these isoforms include G proteins, protein kinases, calcium and calmodulin. For more information see [, ]. This entry represents a region of unknown function found in many of these isoforms. It is part of the N-terminal cytoplasmic domain but its presence is not necessary for catalytic activity []. ; GO: 0004016 adenylate cyclase activity, 0009190 cyclic nucleotide biosynthetic process, 0016021 integral to membrane
Probab=27.63 E-value=26 Score=22.01 Aligned_cols=8 Identities=50% Similarity=1.203 Sum_probs=6.5
Q ss_pred EeCCCCCC
Q psy13852 46 YSASWGPT 53 (78)
Q Consensus 46 YS~SWGP~ 53 (78)
|..||||.
T Consensus 3 ~l~~W~ae 10 (101)
T PF06327_consen 3 YLESWGAE 10 (101)
T ss_pred CCCCcCCc
Confidence 77899984
No 62
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=26.98 E-value=82 Score=22.19 Aligned_cols=75 Identities=20% Similarity=0.186 Sum_probs=41.0
Q ss_pred ceeeeecccccCCCcceeeeeCCCC---CChHHH--hhhhcCCCCcceeEe---CCCCCCCCCccccCch--HHHHHHHH
Q psy13852 2 ATITMQHELLQISHDGRIRMLDQPY---MTDLIE--ANSMGHEPNLIDIYS---ASWGPTDDGKTVDGPR--NATMRAIV 71 (78)
Q Consensus 2 ~~i~m~~gvAy~a~i~GIRmL~g~~---vtd~~E--A~Als~~~~~idIYS---~SWGP~DdG~t~~gP~--~l~~~Al~ 71 (78)
|.|.+.-++..+-+|.||++++..+ +.+..+ -..+.-+++.-.+.- -.|.-..++..+|+-. .+|-+|+.
T Consensus 95 G~I~~~v~i~~dg~I~gv~v~~~~ETpGlG~~i~~~~~~f~~qf~gk~~~~~~~~~~~~~k~~~~iDaISGATiTS~av~ 174 (186)
T TIGR01947 95 GPIQLLVGIDKDGTILGVRVLSHKETPGLGDKIELRISEWIEGFAGKSLADPDDDHWAVKKDGGQFDQFTGATITPRAVV 174 (186)
T ss_pred CceEEEEEEcCCCeEEEEEEeecCCCcccccccccccHhHHhhCCCCccCCCcccceeeccCCCccceEeeccccHHHHH
Confidence 4567777777788999999998732 222222 111111111111110 2454444454566665 45668888
Q ss_pred HHHhc
Q psy13852 72 RGVNE 76 (78)
Q Consensus 72 ~Gv~~ 76 (78)
++|+.
T Consensus 175 ~av~~ 179 (186)
T TIGR01947 175 NAVKR 179 (186)
T ss_pred HHHHH
Confidence 88864
No 63
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=26.01 E-value=68 Score=26.34 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=21.7
Q ss_pred CCCCCccc-----cCchHHHHHHHHHHHhcCC
Q psy13852 52 PTDDGKTV-----DGPRNATMRAIVRGVNEHQ 78 (78)
Q Consensus 52 P~DdG~t~-----~gP~~l~~~Al~~Gv~~GR 78 (78)
|.|.|-.+ +|-..|++.||+.+++++|
T Consensus 181 pe~~GIgikp~s~~~s~Rlvr~ai~yAi~~~r 212 (407)
T COG0538 181 PEDSGIGIKPISKEGSIRLVRAAIEYAIENKR 212 (407)
T ss_pred CCCCceEEEecCchhhHHHHHHHHHHHHHcCC
Confidence 67777333 6777899999999999986
No 64
>PF02675 AdoMet_dc: S-adenosylmethionine decarboxylase ; InterPro: IPR003826 Polyamines such as spermidine and spermine are essential for cellular growth under most conditions, being implicated in a large number of cellular processes including DNA, RNA and protein synthesis. S-adenosylmethionine decarboxylase (AdoMetDC) plays an essential regulatory role in the polyamine biosynthetic pathway by generating the n-propylamine residue required for the synthesis of spermidine and spermine from putrescein [, ]. Unlike many amino acid decarboxylases AdoMetDC uses a covalently bound pyruvate residue as a cofactor rather than the more common pyridoxal 5'-phosphate. These proteins can be divided into two main groups which show little sequence similarity either to each other, or to other pyruvoyl-dependent amino acid decarboxylases: class I enzymes found in bacteria and archaea, and class II enzymes found in eukaryotes. In both groups the active enzyme is generated by the post-translational autocatalytic cleavage of a precursor protein. This cleavage generates the pyruvate precursor from an internal serine residue and results in the formation of two non-identical subunits termed alpha and beta which form the active enzyme. Members of this family are related to the amino terminus of Escherichia coli S-adenosylmethionine decarboxylase.; GO: 0004014 adenosylmethionine decarboxylase activity, 0008295 spermidine biosynthetic process; PDB: 1VR7_A 3IWC_D 3IWD_D 3IWB_C 1TMI_A 1TLU_A 2III_A.
Probab=25.11 E-value=33 Score=21.96 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=8.1
Q ss_pred CCcceeEeCC
Q psy13852 40 PNLIDIYSAS 49 (78)
Q Consensus 40 ~~~idIYS~S 49 (78)
+=.+|||||+
T Consensus 69 ~~avDiftC~ 78 (106)
T PF02675_consen 69 YAAVDIFTCG 78 (106)
T ss_dssp EEEEEEEEES
T ss_pred eEEEEEEEcC
Confidence 4479999996
No 65
>PF11860 DUF3380: Protein of unknown function (DUF3380); InterPro: IPR024408 Proteins in this entry including lysozyme from Enterobacteria phage PRD1 [, ].
Probab=24.48 E-value=22 Score=25.60 Aligned_cols=11 Identities=45% Similarity=0.652 Sum_probs=8.4
Q ss_pred cceeEeCCCCC
Q psy13852 42 LIDIYSASWGP 52 (78)
Q Consensus 42 ~idIYS~SWGP 52 (78)
..=+.|||||-
T Consensus 83 ~AAl~SaSWG~ 93 (175)
T PF11860_consen 83 EAALESASWGL 93 (175)
T ss_pred HHHHHHhhhhH
Confidence 44578999984
No 66
>PLN02229 alpha-galactosidase
Probab=24.37 E-value=43 Score=27.34 Aligned_cols=10 Identities=50% Similarity=1.179 Sum_probs=7.8
Q ss_pred eEe-CCCCCCC
Q psy13852 45 IYS-ASWGPTD 54 (78)
Q Consensus 45 IYS-~SWGP~D 54 (78)
+|| |+||+.+
T Consensus 211 ~~SlC~WG~~~ 221 (427)
T PLN02229 211 FYSLCEWGVDD 221 (427)
T ss_pred EEEecCCCCCC
Confidence 577 9999854
No 67
>COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.79 E-value=2.9e+02 Score=20.18 Aligned_cols=67 Identities=16% Similarity=0.051 Sum_probs=42.7
Q ss_pred ecccccCCCcceeeeeCCC--CCChHHHhhhhcCCCCc---ceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 7 QHELLQISHDGRIRMLDQP--YMTDLIEANSMGHEPNL---IDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 7 ~~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~~~~---idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
..|+|+++++..++.|+.. .-+-...+..+.+.-+. .++..-|+|.. .-+.+......|+......|
T Consensus 204 ~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~----~~~~~~~~~~~a~~~~~~~g 275 (508)
T COG1404 204 VAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS----LSDSASPALGDALAAAANAG 275 (508)
T ss_pred cccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC----ccccccHHHHHHHHHHHHcC
Confidence 3479999999999999841 12222225666666543 78888898875 23344555666666665554
No 68
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=21.37 E-value=31 Score=22.82 Aligned_cols=13 Identities=38% Similarity=0.560 Sum_probs=9.6
Q ss_pred EeCCCCCCCCCcc
Q psy13852 46 YSASWGPTDDGKT 58 (78)
Q Consensus 46 YS~SWGP~DdG~t 58 (78)
.+.=|||+..|||
T Consensus 19 ~~~i~GpPGTGKT 31 (236)
T PF13086_consen 19 ITLIQGPPGTGKT 31 (236)
T ss_dssp -EEEE-STTSSHH
T ss_pred CEEEECCCCCChH
Confidence 5566999999998
No 69
>KOG2366|consensus
Probab=21.19 E-value=51 Score=27.10 Aligned_cols=15 Identities=33% Similarity=0.499 Sum_probs=10.7
Q ss_pred cceeEe-CCCCCCCCC
Q psy13852 42 LIDIYS-ASWGPTDDG 56 (78)
Q Consensus 42 ~idIYS-~SWGP~DdG 56 (78)
.==+|| |||+-.+-+
T Consensus 188 rpi~ySlC~W~~~~~~ 203 (414)
T KOG2366|consen 188 RPIFYSLCSWPAYHPG 203 (414)
T ss_pred CceEEEeccCcccccC
Confidence 445899 999865544
No 70
>KOG3980|consensus
Probab=20.51 E-value=58 Score=26.36 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=34.2
Q ss_pred ceeeeecccccCCCcceeeeeCCCCCChHHHhhh--hcCCCCcceeEeCCCCCCCCCc
Q psy13852 2 ATITMQHELLQISHDGRIRMLDQPYMTDLIEANS--MGHEPNLIDIYSASWGPTDDGK 57 (78)
Q Consensus 2 ~~i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA~A--ls~~~~~idIYS~SWGP~DdG~ 57 (78)
|-|.-++|+||.++|+. -+ ..+.+|+.- |.-.--.+.||..=|-+.|.|+
T Consensus 183 g~I~kIrG~ays~rVsP--~~----A~rm~d~Ak~~l~~~i~dv~i~~d~~~g~~sg~ 234 (361)
T KOG3980|consen 183 GKIKKIRGVAYSTRVSP--SL----ANRMVDAAKRVLHKFIPDVYIYTDVRKGVDSGF 234 (361)
T ss_pred ccEEEEEeEEEEcccCh--HH----HHHHHHHHHHHHhhhCCceEEEEeeecccccCC
Confidence 45677899999999887 22 345555533 4433346788988888888764
No 71
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=20.14 E-value=42 Score=26.68 Aligned_cols=18 Identities=33% Similarity=0.553 Sum_probs=14.3
Q ss_pred CccccCchHHHHHHHHHH
Q psy13852 56 GKTVDGPRNATMRAIVRG 73 (78)
Q Consensus 56 G~t~~gP~~l~~~Al~~G 73 (78)
|-...-|++.|++||.||
T Consensus 101 g~r~A~pGEFt~RAflng 118 (449)
T PRK05291 101 GARLAEPGEFTKRAFLNG 118 (449)
T ss_pred CCEEccCccchHHHHhcC
Confidence 345578899999999887
No 72
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=20.11 E-value=92 Score=25.61 Aligned_cols=33 Identities=27% Similarity=0.516 Sum_probs=21.5
Q ss_pred CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852 40 PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH 77 (78)
Q Consensus 40 ~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G 77 (78)
+.+|| |.+||||.=-|.. ++-..+|++..+++|
T Consensus 53 n~YID-y~~~~Gp~ilGH~----~p~V~~Av~~~l~~G 85 (432)
T COG0001 53 NEYID-YVLGWGPLILGHA----HPAVVEAVQEQLERG 85 (432)
T ss_pred CEeee-hhccCcccccCCC----CHHHHHHHHHHHHhc
Confidence 34666 8999999776652 233666666666555
Done!