RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy13852
         (78 letters)



>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET:
           DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus}
           SCOP: b.18.1.20 c.41.1.1
          Length = 471

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++
Sbjct: 115 GGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 173

Query: 77  HQ 78
            +
Sbjct: 174 GR 175


>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT
           like protease, serine protease; HET: NDG; 1.90A
           {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB:
           1r64_A* 1ot5_A*
          Length = 503

 Score = 59.3 bits (143), Expect = 2e-12
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 14  SHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG 73
           +    IR+L    +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+G
Sbjct: 125 AKISGIRILSGD-ITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKG 183

Query: 74  VNEHQ 78
           V E +
Sbjct: 184 VTEGR 188


>2oxa_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas
           sobria} PDB: 3hjr_A
          Length = 600

 Score = 42.2 bits (98), Expect = 2e-06
 Identities = 11/80 (13%), Positives = 25/80 (31%), Gaps = 21/80 (26%)

Query: 19  IRMLD---QPYMTDLIEANSMGHEPNLIDIYSASWGPTD------------------DGK 57
             +LD   Q    D + A    +      +++ S+  +                   + +
Sbjct: 144 FNLLDDNSQQLQKDWLYALGDSNASRDNRVFNHSYRMSVVDPRSANSLDQSQLDRLFEQQ 203

Query: 58  TVDGPRNATMRAIVRGVNEH 77
           T+     A ++A   G N+ 
Sbjct: 204 TLKAQGAAYIKAAGNGFNKI 223


>2zx2_A CSL3; lectin, rhamnose, innate immunity, immune system, sugar
           binding protein; HET: RAM; 1.80A {Oncorhynchus keta}
           PDB: 2zx1_A 2zx0_A* 2zx3_A* 2zx4_A*
          Length = 195

 Score = 33.6 bits (76), Expect = 0.002
 Identities = 6/58 (10%), Positives = 17/58 (29%)

Query: 11  LQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMR 68
           L   +    +      +      + +  +   I I  A++G         G  +  ++
Sbjct: 88  LDTKYSCVQQQETISSIICEGSDSQLLCDRGEIRIQRANYGRRQHDVCSIGRPHQQLK 145



 Score = 27.4 bits (60), Expect = 0.34
 Identities = 4/14 (28%), Positives = 6/14 (42%)

Query: 43 IDIYSASWGPTDDG 56
          I I  A++G     
Sbjct: 20 IHIKRANYGRRQHD 33


>2jx9_A Latrophilin 1; lectin, beta-sandwich, disulphide, glycosylated,
          G-protein C receptor, membrane, receptor, transducer,
          transmembrane, CE adhesion; HET: NAG; NMR {Mus
          musculus} PDB: 2jxa_A*
          Length = 106

 Score = 26.4 bits (58), Expect = 0.61
 Identities = 6/14 (42%), Positives = 10/14 (71%)

Query: 43 IDIYSASWGPTDDG 56
          I + +A++G TDD 
Sbjct: 28 IMVENANYGRTDDK 41


>1lj8_A Mannitol dehydrogenase; oxidoreductase, NAD, long-chain
           dehydrogenase; HET: NAD; 1.70A {Pseudomonas fluorescens}
           SCOP: a.100.1.9 c.2.1.6 PDB: 1m2w_A*
          Length = 493

 Score = 26.5 bits (59), Expect = 0.86
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 16/79 (20%)

Query: 6   MQHELLQISHDG----RIRMLDQPYMTDLIEANSMGHEPNLIDIYSASW-----GPTDDG 56
           +  +L ++  DG        +       +    + G E     +  A+W     G  ++G
Sbjct: 367 IADQLERVCSDGSSKFPKFTVPT-----INRLIADGRETERAALVVAAWALYLKGVDENG 421

Query: 57  K--TVDGPRNATMRAIVRG 73
              T+  PR    + +V  
Sbjct: 422 VSYTIPDPRAEFCQGLVSD 440


>3sz3_A Tryptophanyl-tRNA synthetase; structural genomics, center for
           structural genomics of infec diseases, csgid, rossmann
           fold; HET: TRP; 1.50A {Vibrio cholerae o1 biovar el tor}
          Length = 341

 Score = 25.2 bits (56), Expect = 2.5
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 16/51 (31%)

Query: 14  SHDGRIRMLDQPY---------MTDLIEANSMGHEP-------NLIDIYSA 48
           +    I +L+ P           TD      + ++        NL+ +YSA
Sbjct: 208 NRKNVITLLEDPKSIIKKINKAQTDAETPPRIAYDVENKAGIANLMGLYSA 258


>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid,
           structural genomics, niaid, center for structural
           genomics infectious diseases; 1.95A {Yersinia pestis}
          Length = 346

 Score = 23.7 bits (52), Expect = 7.2
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 16/51 (31%)

Query: 14  SHDGRIRMLDQPY---------MTDLIEANSMGHEP-------NLIDIYSA 48
           + +  I +L+ P          MTD  E   + ++        NL+DI S 
Sbjct: 214 NRNNVIELLEDPKSVVKKIKRAMTDSDEPALIRYDVEKKAGVSNLLDILSG 264


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.317    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0797    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,215,150
Number of extensions: 60549
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 10
Length of query: 78
Length of database: 6,701,793
Length adjustment: 47
Effective length of query: 31
Effective length of database: 5,389,506
Effective search space: 167074686
Effective search space used: 167074686
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)